BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031347
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0AFR6|YCIO_SHIFL Uncharacterized protein YciO OS=Shigella flexneri GN=yciO PE=3 SV=1
Length = 206
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPS------ 139
P + VE++++G V V PTD+ YA+ C ++ +A+ER+ RI+ +
Sbjct: 9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLM 68
Query: 140 --KVRKIASHIFSIFIIWRLMQK 160
+ +++++ F + +RLM+
Sbjct: 69 CRDLSELSTYSFVDNVAFRLMKN 91
>sp|P0AFR4|YCIO_ECOLI Uncharacterized protein YciO OS=Escherichia coli (strain K12)
GN=yciO PE=1 SV=1
Length = 206
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPS------ 139
P + VE++++G V V PTD+ YA+ C ++ +A+ER+ RI+ +
Sbjct: 9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLM 68
Query: 140 --KVRKIASHIFSIFIIWRLMQK 160
+ +++++ F + +RLM+
Sbjct: 69 CRDLSELSTYSFVDNVAFRLMKN 91
>sp|P0AFR5|YCIO_ECOL6 Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=yciO PE=3 SV=1
Length = 206
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPS------ 139
P + VE++++G V V PTD+ YA+ C ++ +A+ER+ RI+ +
Sbjct: 9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLM 68
Query: 140 --KVRKIASHIFSIFIIWRLMQK 160
+ +++++ F + +RLM+
Sbjct: 69 CRDLSELSTYSFVDNVAFRLMKN 91
>sp|B0TLD6|RIMN_SHEHH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella halifaxensis (strain HAW-EB4) GN=rimN PE=3
SV=1
Length = 187
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
V EL+++G V PT+ +Y + CD + AIERL IK
Sbjct: 9 VAELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIK 46
>sp|Q7MGL3|RIMN_VIBVY tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
vulnificus (strain YJ016) GN=rimN PE=3 SV=2
Length = 186
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
L+ VV+ LK+G V PT+ ++ + CD + AIERL IK
Sbjct: 4 NLQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQ 46
>sp|Q8DDD6|RIMN_VIBVU tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
vulnificus (strain CMCP6) GN=rimN PE=3 SV=1
Length = 186
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
L+ VV+ LK+G V PT+ ++ + CD + AIERL IK
Sbjct: 4 NLQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQ 46
>sp|Q3KKE2|RIMN_PSEPF tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas fluorescens (strain Pf0-1) GN=rimN PE=3
SV=1
Length = 185
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 90 DSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
+SW+++ ++ GAV PT+ ++ + CD + A++RL IKN
Sbjct: 3 NSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKN 48
>sp|Q499R4|YRDC_RAT YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus
GN=Yrdc PE=2 SV=1
Length = 280
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 82 VEADPSGADSWK--LEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 139
VEA W L V L+ GAV +PTDTLY + C +A+ + R+K S
Sbjct: 57 VEAASPERSGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGR--S 114
Query: 140 KVRKIASHIFSIFIIWRLMQ 159
+ + +A + + ++R Q
Sbjct: 115 EAKPLAVCLGRVADVYRYCQ 134
>sp|Q7VNS3|RIMN_HAEDU tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724)
GN=rimN PE=3 SV=1
Length = 184
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
L V+ELLK+ V PT++++ + C+ + AI +L ++KN
Sbjct: 3 NLLAVIELLKQNQVVAYPTESVFGLGCNPNNEEAIRQLLQLKN 45
>sp|Q48AU1|RIMN_COLP3 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
GN=rimN PE=3 SV=1
Length = 183
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
VVE K G + PT+ ++ + CD + A++RL ++K P K
Sbjct: 6 VVEAFKNGGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEK 49
>sp|Q0VC80|YRDC_BOVIN YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC
PE=2 SV=1
Length = 276
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 88 GADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASH 147
G + L V L+ GAV +PTDTLY + C A+ + R+K S+ + +A
Sbjct: 62 GGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGR--SETKPLAVC 119
Query: 148 IFSIFIIWR 156
+ + ++R
Sbjct: 120 LGRVADVYR 128
>sp|Q1H4G9|RIMN_METFK tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875) GN=rimN PE=3 SV=1
Length = 180
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 99 ELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
L+ G V PT++ + + CD +H A++RL RIK
Sbjct: 8 HFLRSGGVIAYPTESCFGLGCDPTNHRALKRLLRIKG 44
>sp|A8GYH9|RIMN_SHEPA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
GN=rimN PE=3 SV=1
Length = 187
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 99 ELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
EL+++G V PT+ +Y + CD + AI +L +IK
Sbjct: 11 ELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQ 47
>sp|Q4KKQ6|RIMN_PSEF5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=rimN PE=3 SV=1
Length = 185
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
SW+++ ++ GAV PT+ ++ + CD + A++RL IK+
Sbjct: 4 SWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKS 48
>sp|Q3IDH7|RIMN_PSEHT tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rimN PE=3 SV=1
Length = 187
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 89 ADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
+D + + L +G V + PT+ +Y + CD + A+ERL IK
Sbjct: 2 SDQSTIAAAITCLAQGEVILYPTEAVYGLGCDPDNQQAVERLLAIK 47
>sp|P45103|Y1198_HAEIN Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1198 PE=3 SV=1
Length = 207
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNV 136
P + + VE+L++G V V PTD+ YA+ C + A++R+ I+ +
Sbjct: 9 PENPQARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKL 59
>sp|Q3J7C4|RIMN_NITOC tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=rimN PE=3 SV=1
Length = 185
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
+W++ +++ G V PT+ ++ + CD +AIER+ ++K SK
Sbjct: 5 NWRVRLAARIIRGGGVIAYPTEGVFGLGCDPGRKAAIERILQLKGRSISK 54
>sp|Q3SG43|RIMN_THIDA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=rimN PE=3 SV=1
Length = 188
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 101 LKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
L+ G V PT++ Y + CD ++ +A+ RL R+K + K
Sbjct: 18 LRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGK 57
>sp|Q48QH8|RIMN_PSE14 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=rimN PE=3 SV=1
Length = 185
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
SW+++ + ++ GAV PT+ ++ + CD A+ RL IK+
Sbjct: 4 SWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKS 48
>sp|Q500S6|RIMN_PSEU2 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas syringae pv. syringae (strain B728a)
GN=rimN PE=3 SV=1
Length = 185
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
SW+++ + ++ GAV PT+ ++ + CD A+ RL IK+
Sbjct: 4 SWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKS 48
>sp|Q88B46|RIMN_PSESM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=rimN PE=3 SV=1
Length = 185
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
SW+++ + ++ GAV PT+ ++ + CD A+ RL IK
Sbjct: 4 SWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIK 47
>sp|A9KH21|RIMN_COXBN tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rimN
PE=3 SV=1
Length = 186
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 98 VELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
V+ L++G V PT+ +Y + CD +H A+ +L IK
Sbjct: 12 VKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIK 48
>sp|Q83AA2|RIMN_COXBU tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase
I) GN=rimN PE=3 SV=1
Length = 186
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 98 VELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
V+ L++G V PT+ +Y + CD +H A+ +L IK
Sbjct: 12 VKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIK 48
>sp|A9N9G8|RIMN_COXBR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain RSA 331 / Henzerling II)
GN=rimN PE=3 SV=1
Length = 186
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 98 VELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
V+ L++G V PT+ +Y + CD +H A+ +L IK
Sbjct: 12 VKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIK 48
>sp|A7MPF3|RIMN_CROS8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=rimN
PE=3 SV=1
Length = 190
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
+V++LK+ V PT+ ++ + CD S +A++RL +K
Sbjct: 13 IVDVLKKEQVIAYPTEAVFGVGCDPDSETAVKRLLELKQ 51
>sp|Q1QTJ8|RIMN_CHRSD tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB 13768) GN=rimN PE=3 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
++ V L+ GA+ PT+ ++ + CD +A+ RL +K +P+K
Sbjct: 7 RIADAVAALRRGALLAYPTEAVWGLGCDPDDDAALARLIALKQRDPAK 54
>sp|A4XNB6|RIMN_PSEMY tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas mendocina (strain ymp) GN=rimN PE=3 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 89 ADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
A +W+++ ++ EG V PT+ ++ + CD + A++RL +K
Sbjct: 2 ASNWQVQQAARVVCEGGVIAYPTEAVWGLGCDPWNEVAVDRLLALK 47
>sp|A8FP81|RIMN_SHESH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sediminis (strain HAW-EB3) GN=rimN PE=3
SV=1
Length = 185
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 95 EPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
+ V E++++G V PT+ +Y + CD + AI RL +K
Sbjct: 7 DEVQEIIEQGGVVAYPTEAVYGLGCDPDNDEAITRLLALK 46
>sp|Q9CLG4|RIMN_PASMU tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pasteurella multocida (strain Pm70) GN=rimN PE=3 SV=1
Length = 183
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
++ +VE LK+ V PT+ ++ + C+ S SA+++L +K
Sbjct: 2 NIQQIVEQLKQNEVVAYPTEAVFGLGCNPNSESAVQKLLVLKQ 44
>sp|Q2SQW8|RIMN_HAHCH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Hahella chejuensis (strain KCTC 2396) GN=rimN PE=3
SV=1
Length = 184
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
+W ++ V +L G V PT+ ++ + CD A+ R+ ++K
Sbjct: 3 AWFIQKAVSVLSRGGVLAYPTEAVWGLGCDPSCEDAVNRILQLK 46
>sp|Q1I2G9|RIMN_PSEE4 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas entomophila (strain L48) GN=rimN PE=3
SV=1
Length = 185
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
SW+++ +K GAV PT+ ++ + CD + A+ RL +K+
Sbjct: 4 SWRVQQAAREVKAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKS 48
>sp|Q493I0|RIMN_BLOPB tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Blochmannia pennsylvanicus (strain BPEN) GN=rimN PE=3
SV=1
Length = 194
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 101 LKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
L +G V + PT++++ + CD + +AI L +IKN
Sbjct: 22 LSQGKVIIYPTESVFGLGCDPDNKNAISTLLKIKN 56
>sp|Q65WC1|RIMN_MANSM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=rimN PE=3 SV=1
Length = 183
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIF 152
+L +VE LK+ V PT+ ++ + C+ S SA+E+L +K K + +H +
Sbjct: 2 ELAQIVERLKKNEVVAYPTEAVFGLGCNPNSKSAVEKLLILKQRPVEKGLILVAHKLDLL 61
Query: 153 I 153
+
Sbjct: 62 L 62
>sp|Q21PU1|RIMN_SACD2 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
DSM 17024) GN=rimN PE=3 SV=1
Length = 191
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
KL V L +G V PT+ ++ + CD + A+E++ R+K
Sbjct: 12 KLTQCVRTLLQGGVIAYPTEAVWGLGCDPDNDHAVEKILRLK 53
>sp|Q3BNJ9|RIMN_XANC5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
GN=rimN PE=3 SV=1
Length = 187
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 90 DSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
D+ L+ V L +G V PT+ ++ + CD + +A+ RL IK
Sbjct: 3 DTLDLDRAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVLRLLEIK 47
>sp|Q08A23|RIMN_SHEFN tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella frigidimarina (strain NCIMB 400) GN=rimN
PE=3 SV=1
Length = 188
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 93 KLEP--VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
+L+P V +++G V PT+ ++ + CD + SAIE+L +K
Sbjct: 3 QLQPSAVATTIQQGGVIAYPTEAVFGLGCDPDNDSAIEKLLVVKQ 47
>sp|Q8PG13|RIMN_XANAC tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xanthomonas axonopodis pv. citri (strain 306) GN=rimN
PE=3 SV=1
Length = 187
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 90 DSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
D+ L+ V L +G V PT+ ++ + CD + +A+ RL IK
Sbjct: 3 DTLDLDRAVAALTQGGVIAYPTEAVWGLGCDPRQRAAVMRLLEIK 47
>sp|Q31JQ7|RIMN_THICR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Thiomicrospira crunogena (strain XCL-2) GN=rimN PE=3
SV=1
Length = 186
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 99 ELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK-VRKIASHIFSI 151
+L+ EG V PT+ +Y + CD + A ++L R+K K V IAS I I
Sbjct: 13 KLITEGGVLAYPTEAVYGLGCDPLNKDAFQQLLRLKQRPLEKGVILIASSIAQI 66
>sp|B1J499|RIMN_PSEPW tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas putida (strain W619) GN=rimN PE=3 SV=1
Length = 185
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
SW+++ ++ GAV PT+ ++ + CD + A+ RL +K+
Sbjct: 4 SWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKS 48
>sp|A3QJE8|RIMN_SHELP tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
GN=rimN PE=3 SV=1
Length = 185
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
+VE + +G V PT+ +Y + CD + AI++L +K
Sbjct: 9 LVETVLQGGVIAYPTEAVYGLGCDPDNDEAIQKLLDLKQ 47
>sp|Q9KT69|SYM_VIBCH Methionine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=metG PE=3 SV=2
Length = 683
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G S+ P +Y ++ +K P+++K+ EG M + A P G+D W LE
Sbjct: 620 FSGIKSAYQPEDLIGKYTVVVANLK--PRKMKFG----MSEG--MILAAGPGGSDLWLLE 671
Query: 96 P 96
P
Sbjct: 672 P 672
>sp|A5F2P8|SYM_VIBC3 Methionine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=metG PE=3 SV=2
Length = 683
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G S+ P +Y ++ +K P+++K+ EG M + A P G+D W LE
Sbjct: 620 FSGIKSAYQPEDLIGKYTVVVANLK--PRKMKFG----MSEG--MILAAGPGGSDLWLLE 671
Query: 96 P 96
P
Sbjct: 672 P 672
>sp|B1JPY8|SYM_YERPY Methionine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=metG PE=3 SV=1
Length = 675
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVIAAGPGGSDIFLLSP 664
>sp|Q8Z1W6|RIMN_SALTI tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Salmonella typhi GN=rimN PE=3 SV=1
Length = 190
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
VV+LL + V PT+ ++ + CD S +A+ RL +K
Sbjct: 13 VVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALK 50
>sp|Q9KVT5|RIMN_VIBCH tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=rimN PE=3 SV=1
Length = 188
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
L+ V+ L++G V PT+ ++ + CD + +A+ RL IK
Sbjct: 6 NLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQ 48
>sp|A5F4C5|RIMN_VIBC3 tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 /
O395) GN=rimN PE=3 SV=1
Length = 188
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
L+ V+ L++G V PT+ ++ + CD + +A+ RL IK
Sbjct: 6 NLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQ 48
>sp|A4VFI1|RIMN_PSEU5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas stutzeri (strain A1501) GN=rimN PE=3 SV=1
Length = 185
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
W+++ V +++ G V PT+ ++ + CD A+ RL +K
Sbjct: 4 DWRVQQVARVVRAGGVIAYPTEAVWGVGCDPWDEDAVLRLLALKE 48
>sp|Q5PIS8|RIMN_SALPA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)
GN=rimN PE=3 SV=1
Length = 190
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIK 134
VV+LL + V PT+ ++ + CD S +A+ RL +K
Sbjct: 13 VVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALK 50
>sp|Q6LLJ9|RIMN_PHOPR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Photobacterium profundum GN=rimN PE=3 SV=2
Length = 185
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
L+ VV L+ G V PT+ ++ + CD + A+E+L +K
Sbjct: 3 NLQQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQ 45
>sp|A6VT87|RIMN_MARMS tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Marinomonas sp. (strain MWYL1) GN=rimN PE=3 SV=1
Length = 185
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 94 LEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
+E + +++++G V PT+ ++ + CD + SA+ R+ +K+ SK
Sbjct: 7 VEELADIIRQGGVIAYPTEAVWGLGCDPFNESAVRRILTLKSRPESK 53
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,904,370
Number of Sequences: 539616
Number of extensions: 2488907
Number of successful extensions: 6638
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6560
Number of HSP's gapped (non-prelim): 88
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)