Query 031347
Match_columns 161
No_of_seqs 158 out of 1356
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 12:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11630 hypothetical protein; 99.9 2.4E-23 5.2E-28 170.3 8.6 80 78-157 1-80 (206)
2 COG0009 SUA5 Putative translat 99.9 5.5E-22 1.2E-26 164.5 9.3 77 80-156 2-78 (211)
3 TIGR00057 Sua5/YciO/YrdC/YwlC 99.9 3.5E-22 7.6E-27 162.4 7.7 73 84-156 1-73 (201)
4 PRK10634 tRNA(ANN) t(6)A37 thr 99.8 2.1E-21 4.6E-26 157.1 7.8 68 89-156 5-72 (190)
5 PF01300 Sua5_yciO_yrdC: Telom 99.8 8.1E-20 1.7E-24 145.2 7.8 58 99-156 1-58 (179)
6 TIGR00143 hypF [NiFe] hydrogen 99.6 2.6E-15 5.6E-20 142.3 11.5 67 91-158 162-228 (711)
7 COG0068 HypF Hydrogenase matur 98.7 5.8E-08 1.3E-12 92.9 9.1 67 92-159 198-264 (750)
8 KOG3051 RNA binding/translatio 98.4 1.1E-07 2.3E-12 81.8 1.5 63 92-154 17-79 (261)
9 KOG3051 RNA binding/translatio 89.0 0.053 1.1E-06 47.2 -2.1 93 50-151 16-110 (261)
10 cd07985 LPLAT_GPAT Lysophospho 79.8 5.5 0.00012 34.2 6.0 61 89-149 99-171 (235)
11 PF00316 FBPase: Fructose-1-6- 50.2 14 0.0003 33.1 2.6 59 93-156 239-319 (324)
12 cd00354 FBPase Fructose-1,6-bi 49.5 23 0.00049 31.4 3.8 63 94-156 233-312 (315)
13 PLN02262 fructose-1,6-bisphosp 48.3 23 0.00051 31.8 3.8 64 93-156 251-331 (340)
14 PRK09293 fructose-1,6-bisphosp 48.1 23 0.00051 31.5 3.7 63 94-156 241-320 (327)
15 PF10087 DUF2325: Uncharacteri 48.0 87 0.0019 22.2 6.1 49 96-153 41-90 (97)
16 PLN02542 fructose-1,6-bisphosp 46.2 24 0.00053 32.7 3.6 63 94-156 329-408 (412)
17 PLN02349 glycerol-3-phosphate 41.9 33 0.00072 32.1 3.8 57 91-149 280-351 (426)
18 TIGR03682 arCOG04112 arCOG0411 31.8 55 0.0012 28.7 3.4 30 96-126 19-49 (308)
19 PF03279 Lip_A_acyltrans: Bact 30.6 45 0.00097 27.9 2.6 22 94-115 181-202 (295)
20 KOG1253 tRNA methyltransferase 30.6 69 0.0015 30.8 4.0 41 81-121 186-226 (525)
21 PRK09348 glyQ glycyl-tRNA synt 30.1 67 0.0014 28.6 3.6 84 18-118 36-129 (283)
22 PRK15018 1-acyl-sn-glycerol-3- 28.4 68 0.0015 26.9 3.3 34 81-114 113-150 (245)
23 PF08351 DUF1726: Domain of un 27.2 39 0.00084 24.6 1.4 28 87-114 21-48 (92)
24 cd00733 GlyRS_alpha_core Class 26.8 85 0.0018 27.9 3.7 84 18-118 32-125 (279)
25 COG4074 Mth H2-forming N5,N10- 26.8 84 0.0018 28.0 3.7 63 80-142 142-237 (343)
26 PF02543 CmcH_NodU: Carbamoylt 26.4 1.2E+02 0.0026 27.1 4.6 54 93-146 253-315 (360)
27 cd07988 LPLAT_ABO13168-like Ly 26.4 93 0.002 24.2 3.5 49 80-132 70-121 (163)
28 PLN02161 beta-amylase 26.4 5.5E+02 0.012 24.9 9.2 47 90-136 115-165 (531)
29 PF14258 DUF4350: Domain of un 25.8 1.5E+02 0.0033 19.5 4.1 30 80-109 37-68 (70)
30 TIGR00091 tRNA (guanine-N(7)-) 25.6 74 0.0016 25.2 2.9 24 91-114 112-135 (194)
31 PF09837 DUF2064: Uncharacteri 25.4 72 0.0016 24.1 2.7 40 80-119 62-104 (122)
32 PRK10148 hypothetical protein; 25.0 1.2E+02 0.0025 23.5 3.8 33 90-122 95-132 (147)
33 PF08241 Methyltransf_11: Meth 24.7 36 0.00078 22.2 0.8 20 90-109 76-95 (95)
34 cd07992 LPLAT_AAK14816-like Ly 24.3 1.2E+02 0.0026 24.0 3.9 34 81-114 77-121 (203)
35 PF09180 ProRS-C_1: Prolyl-tRN 23.3 1E+02 0.0022 21.1 2.9 18 94-111 1-18 (68)
36 COG0144 Sun tRNA and rRNA cyto 23.2 58 0.0013 28.9 2.1 38 90-131 267-304 (355)
37 COG2192 Predicted carbamoyl tr 23.2 2.7E+02 0.0058 27.1 6.5 81 60-146 340-442 (555)
38 PRK00014 ribB 3,4-dihydroxy-2- 23.1 2.5E+02 0.0054 24.2 5.8 58 92-154 19-82 (230)
39 PF14399 Transpep_BrtH: NlpC/p 22.9 93 0.002 25.9 3.1 27 90-116 74-100 (317)
40 PF00926 DHBP_synthase: 3,4-di 22.8 2.4E+02 0.0052 23.4 5.5 38 94-131 1-44 (194)
41 TIGR02208 lipid_A_msbB lipid A 22.6 81 0.0018 26.9 2.8 33 92-124 180-216 (305)
42 COG1560 HtrB Lauroyl/myristoyl 22.2 53 0.0011 29.0 1.6 44 92-135 182-234 (308)
43 smart00563 PlsC Phosphate acyl 21.5 1.2E+02 0.0026 20.5 3.0 35 82-116 51-88 (118)
44 PLN02781 Probable caffeoyl-CoA 21.3 2.2E+02 0.0047 23.5 5.0 43 81-123 147-190 (234)
45 PF04472 DUF552: Protein of un 20.7 1.5E+02 0.0032 20.3 3.3 22 91-112 9-30 (73)
46 cd01448 TST_Repeat_1 Thiosulfa 20.4 2.3E+02 0.005 20.1 4.4 25 124-148 64-88 (122)
47 TIGR00446 nop2p NOL1/NOP2/sun 20.3 78 0.0017 26.5 2.2 38 91-132 179-216 (264)
48 TIGR00506 ribB 3,4-dihydroxy-2 20.1 2.8E+02 0.0061 23.2 5.4 39 93-131 4-48 (199)
No 1
>PRK11630 hypothetical protein; Provisional
Probab=99.89 E-value=2.4e-23 Score=170.30 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=74.6
Q ss_pred ceEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHHH
Q 031347 78 GLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRL 157 (161)
Q Consensus 78 ~~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~l 157 (161)
|++++++++++++.+.+++++++|++||+|+|||||+|||+|++.|++|++|||++|+|+.+|||+++|+|+++++.|.-
T Consensus 1 m~~~~~~~~~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~lK~R~~~Kpl~ll~~~~~~~~~~~~ 80 (206)
T PRK11630 1 MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF 80 (206)
T ss_pred CCceEecCCCCCCHHHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHHHcCCCCCCCeEEEECCHHHHHHHhc
Confidence 34577889988888889999999999999999999999999999999999999999999999999999999999987753
No 2
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=5.5e-22 Score=164.49 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=72.4
Q ss_pred EEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 80 MYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 80 ~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
+++.+++.++....+++|++.|++||+|+|||||||||||++.|++|++|||++|+|+.+|||+++|+|+++++.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~~K~Rp~~kpLil~~~~~~~l~~~~ 78 (211)
T COG0009 2 QIFMIHPENPQPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDKPLILHVASLEQLKEYA 78 (211)
T ss_pred ceeecCccccchHHHHHHHHHHHcCCEEEEEccchheeecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHh
Confidence 46778888887888999999999999999999999999999999999999999999999999999999999998665
No 3
>TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.
Probab=99.86 E-value=3.5e-22 Score=162.35 Aligned_cols=73 Identities=29% Similarity=0.412 Sum_probs=69.0
Q ss_pred eCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 84 ADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 84 v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
+++++++.+.+++++++|++||||++||||+|||+|+++|++|++|||++|+|+.+|||++||+|+++++.|.
T Consensus 1 ~~~~~~~~~~i~~a~~~L~~G~ii~~PTdTvYgL~~~~~~~~av~ri~~iK~R~~~Kpl~~l~~~~~~l~~~~ 73 (201)
T TIGR00057 1 IHPENPSQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDLSEIEKYA 73 (201)
T ss_pred CCcCCCCHHHHHHHHHHHHCCCEEEEeCCCHHHhhcCCCCHHHHHHHHHHhCCCCCCCeEEEECCHHHHHHHh
Confidence 4677888888999999999999999999999999999999999999999999999999999999999998764
No 4
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=157.14 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=64.6
Q ss_pred CChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 89 ADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 89 p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
++.+.+++++++|++||||+|||||+|||+|++.|++|++|||++|+|+.+|||++||+|++++..|.
T Consensus 5 ~~~~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~ 72 (190)
T PRK10634 5 LQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYI 72 (190)
T ss_pred ccHHHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999998775
No 5
>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []. The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....
Probab=99.80 E-value=8.1e-20 Score=145.15 Aligned_cols=58 Identities=31% Similarity=0.453 Sum_probs=52.0
Q ss_pred HHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 99 ELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 99 e~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
|+|++||+|++||||+|||+|+++|++|++|||++|+|+.+|||+++|+|+++++.|.
T Consensus 1 e~Lk~G~vvi~PTdT~ygl~~~~~n~~av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~ 58 (179)
T PF01300_consen 1 EILKAGGVVIYPTDTVYGLGCDAFNPEAVERIYKIKQRPKNKPLILLVSSIEQLEEYV 58 (179)
T ss_dssp -HHHTT-EEEEEESSSEEEEEETTSHHHHHHHHHHHTSSTTS--EEEESSHHHHHHHE
T ss_pred CccccCCEEEEECCCEEEEEEecCCHHHHHHHHHhhcccCCCCEEEEECCHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999999999997654
No 6
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=99.62 E-value=2.6e-15 Score=142.30 Aligned_cols=67 Identities=24% Similarity=0.207 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHHHh
Q 031347 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLM 158 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~lm 158 (161)
.+.+++++++|++|+||++||||+|||+||++|++||+|||++|+|+ +|||+||++|++++++|..+
T Consensus 162 ~~~i~~aa~~L~~G~IVaipt~ggy~L~cda~n~~AV~rLr~~K~Rp-~KPlavmv~d~~~~~~~~~~ 228 (711)
T TIGR00143 162 DDALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKNRP-LKPFAVMSPDLESAEQHAEL 228 (711)
T ss_pred hHHHHHHHHHHhCCCEEEEEcCCcceeecCCCCHHHHHHHHHHhCCC-CCCEEEEECCHHHHHHHhcC
Confidence 46799999999999999999999999999999999999999999997 69999999999999877643
No 7
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.8e-08 Score=92.89 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=62.9
Q ss_pred hhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHHHhh
Q 031347 92 WKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLMQ 159 (161)
Q Consensus 92 ~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~lmk 159 (161)
+.+.++++.|+.|+||++..-.+|+|+||+.|+++|++|+.-|+|| .|||+||+.|++.++.|+...
T Consensus 198 ~ai~~a~klL~~G~IvAIKGiGGFhLaCda~~~eaV~~LR~rk~Rp-~KPFAvM~kdl~~i~~~a~~~ 264 (750)
T COG0068 198 EAIRKAAKLLKVGKIVAIKGIGGFHLACDARNEEAVAKLRKRKNRP-LKPFAVMAKDLETIEEFAEVN 264 (750)
T ss_pred HHHHHHHHHHhhCCEEEEeecCceeeeecCCchHHHHHHHHhcCCC-CCCceeeeccHHHHHHhhccC
Confidence 3789999999999999999999999999999999999999999995 899999999999999887653
No 8
>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.1e-07 Score=81.79 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=56.2
Q ss_pred hhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHH
Q 031347 92 WKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFII 154 (161)
Q Consensus 92 ~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~ 154 (161)
..++.+.-+-+.++.|++||||+||+++...++.++.+||.+|+|+.++|+++.++++.++.+
T Consensus 17 ~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~ 79 (261)
T KOG3051|consen 17 ALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKR 79 (261)
T ss_pred hhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHH
Confidence 344555556689999999999999999999999999999999999999999999999998863
No 9
>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]
Probab=89.03 E-value=0.053 Score=47.16 Aligned_cols=93 Identities=18% Similarity=0.093 Sum_probs=74.4
Q ss_pred CceeeeeeeeccCccccccCCccccccCceEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHH
Q 031347 50 SRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIER 129 (161)
Q Consensus 50 ~~~~~~~~~~kr~~krLky~~~~f~k~~~~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVer 129 (161)
+++..++.+.++.+++++|.++.|.+.....+...++..-..+....+.+.|..+-.-+.+++++|.. ++.+
T Consensus 16 ~~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~--------~i~~ 87 (261)
T KOG3051|consen 16 PALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAI--------NIPS 87 (261)
T ss_pred hhhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhh--------cchh
Confidence 66778999999999999999999998887777777777777777778888888888888899998877 2777
Q ss_pred HHH--HhCCCCCCCcEEEeCCHHH
Q 031347 130 LRR--IKNVEPSKVRKIASHIFSI 151 (161)
Q Consensus 130 Ly~--iK~R~~~KPL~lLv~sl~~ 151 (161)
+|. +|.-=+. |+.+|....++
T Consensus 88 ~~~~L~~~l~PG-Pltlll~~~~~ 110 (261)
T KOG3051|consen 88 LYLPLASYLWPG-PLTLLLERADE 110 (261)
T ss_pred hhhHHHhhcCCC-ceEEEeecchh
Confidence 777 7765333 78877766553
No 10
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=79.80 E-value=5.5 Score=34.15 Aligned_cols=61 Identities=21% Similarity=0.144 Sum_probs=42.6
Q ss_pred CChhhHHHHHHHHhcCCE--EEEecCceE------EEEecCCCHHHHHHHHHHhCCCCCC----CcEEEeCCH
Q 031347 89 ADSWKLEPVVELLKEGAV--GVIPTDTLY------AIVCDLKSHSAIERLRRIKNVEPSK----VRKIASHIF 149 (161)
Q Consensus 89 p~~~~l~~aae~L~~GgV--VaiPTDTVY------GL~cda~n~~AVerLy~iK~R~~~K----PL~lLv~sl 149 (161)
.+...++.+.+.|++|+. .|||-=|-. -+.-.++++++++-...+=.+.... |+.+++.|+
T Consensus 99 ~~~~alk~~~~lLk~G~~~i~IfPEGtR~r~~~~g~~~p~~Fd~~~~~~~~~La~~s~~p~hi~Plai~~ydi 171 (235)
T cd07985 99 ANLATLKEMQQLLNEGGQLIWVAPSGGRDRPDANGEWYPDPFDPSAVEMMRLLAQKSRVPTHLYPMALLTYDI 171 (235)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCccCCccchHHHHHHHHHHHhcCCCceEEeeEEEeecc
Confidence 567789999999999986 578874433 1223468888888877777664332 588877653
No 11
>PF00316 FBPase: Fructose-1-6-bisphosphatase; InterPro: IPR000146 This entry represents the fructose-1,6-bisphosphatase (FBPase) class 1 family. FBPase is a critical regulatory enzyme in gluconeogenesis that catalyses the removal of 1-phosphate from fructose 1,6-bis-phosphate to form fructose 6-phosphate [, ]. It is involved in many different metabolic pathways and found in most organisms. FBPase requires metal ions for catalysis (Mg2+ and Mn2+ being preferred) and the enzyme is potently inhibited by Li+. The fold of fructose-1,6-bisphosphatase was noted to be identical to that of inositol-1-phosphatase (IMPase) []. Inositol polyphosphate 1-phosphatase (IPPase), IMPase and FBPase share a sequence motif (Asp-Pro-Ile/Leu-Asp-Gly/Ser-Thr/Ser) which has been shown to bind metal ions and participate in catalysis. This motif is also found in the distantly-related fungal, bacterial and yeast IMPase homologues. It has been suggested that these proteins define an ancient structurally conserved family involved in diverse metabolic pathways, including inositol signalling, gluconeogenesis, sulphate assimilation and possibly quinone metabolism []. This entry also includes sedoheptulose-1,7-bisphosphatase, which is a member of the FBPase class 1 family.; GO: 0042578 phosphoric ester hydrolase activity, 0005975 carbohydrate metabolic process; PDB: 2GQ1_A 2QVR_A 2Q8M_B 2OX3_A 2OWZ_A 3KC0_C 2WBB_A 1FTA_C 2VT5_F 2Y5L_F ....
Probab=50.24 E-value=14 Score=33.06 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=42.7
Q ss_pred hHHHHHHHHhcCCEEEEecCceE----------------------EEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHH
Q 031347 93 KLEPVVELLKEGAVGVIPTDTLY----------------------AIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFS 150 (161)
Q Consensus 93 ~l~~aae~L~~GgVVaiPTDTVY----------------------GL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~ 150 (161)
.+.++-+.|..|||..+|.|.-| |.+.+- -+||.+++=..-++-.++++.|.+
T Consensus 239 mVaD~HRiL~~GGif~YP~d~~~~~GKLRlLYEa~PmAflvEqAGG~As~G-----~~riLdi~p~~lHqR~pl~~GS~~ 313 (324)
T PF00316_consen 239 MVADVHRILLKGGIFLYPADKKYPNGKLRLLYEANPMAFLVEQAGGKASDG-----RERILDIVPESLHQRTPLFLGSAE 313 (324)
T ss_dssp HHHHHHHHHHHTCEEEE-SBSSBTTCSSBTTTTHHHHHHHHHHTTCEEESS-----SSBGGGS--SSTT-BE-EEEESHH
T ss_pred cchhHHHHHhhCcEEECCCCCCCCCCceeEEEeccHHHHHHHHcCCEeccC-----CcccccCCCCcccCCCCeEEcCHH
Confidence 36788899999999999999863 333332 278899998888999999999999
Q ss_pred HHHHHH
Q 031347 151 IFIIWR 156 (161)
Q Consensus 151 ~l~~~~ 156 (161)
+++++.
T Consensus 314 eV~~~~ 319 (324)
T PF00316_consen 314 EVEELE 319 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997654
No 12
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=49.47 E-value=23 Score=31.39 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCEEEEecCceEE-------EEecCC----------CHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 94 LEPVVELLKEGAVGVIPTDTLYA-------IVCDLK----------SHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 94 l~~aae~L~~GgVVaiPTDTVYG-------L~cda~----------n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
+.++-+.|..|||..+|.|+.|. .-|.|. .-++.++|..++=..-++-.++++.|.++++++.
T Consensus 233 VaD~hr~L~~GGif~yP~~~~~~~gkLRllyEa~P~afi~EqAGG~as~G~~~iLdi~p~~~hqR~p~~~GS~~eV~~~~ 312 (315)
T cd00354 233 VADVHRILVRGGIFLYPADKKSPKGKLRLLYEANPMAFLVEQAGGKATDGKERILDIVPTSLHQRVPVILGSKEEVERVE 312 (315)
T ss_pred ehHhHHhhhcCeEEEccCCCCCCCCcEeeeeeccHHHHHHHHhCCeecCCCccccccCCCccccCCCeEEeCHHHHHHHH
Confidence 45567778899999999999742 111111 1123479999999999999999999999998764
No 13
>PLN02262 fructose-1,6-bisphosphatase
Probab=48.32 E-value=23 Score=31.85 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=48.3
Q ss_pred hHHHHHHHHhcCCEEEEecCceEE-------EEecCC----------CHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHH
Q 031347 93 KLEPVVELLKEGAVGVIPTDTLYA-------IVCDLK----------SHSAIERLRRIKNVEPSKVRKIASHIFSIFIIW 155 (161)
Q Consensus 93 ~l~~aae~L~~GgVVaiPTDTVYG-------L~cda~----------n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~ 155 (161)
.+.++-+.|..|||..+|.|..|. .-|.|. .-++-++|.+++=..-++-.++++.|.++++++
T Consensus 251 mVaD~hriL~~GGif~YP~d~~~~~GkLRllyEa~P~afi~EqAGG~As~G~~~iLdi~p~~lHqR~pl~~GS~~eV~~~ 330 (340)
T PLN02262 251 MVADVHRTLLYGGIFLYPADKKSPNGKLRVLYEVFPMSFLVEQAGGQAFTGKQRALDLVPTKIHERSPIFLGSYDDVEEI 330 (340)
T ss_pred chHHHHHHHhcCeEEeccCCCCCCCCcEEEEeecchHHHHHHHhCCccccCCccccccCCCccccCCCeEEeCHHHHHHH
Confidence 356677889899999999998772 111111 123457999999999999999999999999765
Q ss_pred H
Q 031347 156 R 156 (161)
Q Consensus 156 ~ 156 (161)
.
T Consensus 331 ~ 331 (340)
T PLN02262 331 K 331 (340)
T ss_pred H
Confidence 4
No 14
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=48.11 E-value=23 Score=31.47 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCEEEEecCceEE-----E--EecCC----------CHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 94 LEPVVELLKEGAVGVIPTDTLYA-----I--VCDLK----------SHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 94 l~~aae~L~~GgVVaiPTDTVYG-----L--~cda~----------n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
+.++-+.|..|||..+|.|..|- | -|.|. .-++-++|.+++=..-++-.++++.|.++++++.
T Consensus 241 VaD~hr~L~~GGif~YP~~~~~~~GkLRllyEa~P~afi~EqAGG~as~G~~~iLd~~p~~lHqr~p~~~GS~~eV~~~~ 320 (327)
T PRK09293 241 VADVHRILLKGGIFLYPADEPYPNGKLRLLYEANPMAFLVEQAGGAASDGKQRILDIEPESLHQRVPLFLGSKEEVERVE 320 (327)
T ss_pred hHHHhHHhhcCeEEEcCCCCCCCCCcEEEEeecchHHHHHHHhCCccccCCccccccCCCccccCCCeEEeCHHHHHHHH
Confidence 56778889999999999997662 1 11111 1224589999999999999999999999998653
No 15
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.99 E-value=87 Score=22.24 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=37.7
Q ss_pred HHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEe-CCHHHHH
Q 031347 96 PVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIAS-HIFSIFI 153 (161)
Q Consensus 96 ~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv-~sl~~l~ 153 (161)
..-+.|++-.+||++||.+ +.++...+.+.=++ .++|+...= .++..++
T Consensus 41 ~l~~~i~~aD~VIv~t~~v--------sH~~~~~vk~~akk-~~ip~~~~~~~~~~~l~ 90 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYV--------SHNAMWKVKKAAKK-YGIPIIYSRSRGVSSLE 90 (97)
T ss_pred HHHHhcCCCCEEEEEeCCc--------ChHHHHHHHHHHHH-cCCcEEEECCCCHHHHH
Confidence 4667899999999999988 78888888776444 478887776 6666654
No 16
>PLN02542 fructose-1,6-bisphosphatase
Probab=46.18 E-value=24 Score=32.73 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCEEEEecCceEE-----E--EecCC----------CHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 94 LEPVVELLKEGAVGVIPTDTLYA-----I--VCDLK----------SHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 94 l~~aae~L~~GgVVaiPTDTVYG-----L--~cda~----------n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
+.++-+.|-.|||..+|.|..|. | -|.|. .-++-+||..++=..-++-.++++.|.++++++.
T Consensus 329 VaDvHRiLl~GGIF~YP~d~~~~~GKLRLLYEa~PmAfivEqAGG~AsdG~~rILDi~P~~lHqR~Pl~~GS~~eV~~~~ 408 (412)
T PLN02542 329 VGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRILDIQPTEIHQRVPLYIGSVEEVEKLE 408 (412)
T ss_pred hHHHHHHhhcCeEEecCCCCCCCCCcEeEeeecchHHHHHHHhCCcccCCCccccccCCCccccCCCeEEcCHHHHHHHH
Confidence 55677788889999999998763 1 12211 1123479999999889999999999999998764
No 17
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=41.92 E-value=33 Score=32.09 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHhcCCEEEE-----------ecCceEEEEecCCCHHHHHHHHHHhCCCCCC----CcEEEeCCH
Q 031347 91 SWKLEPVVELLKEGAVGVI-----------PTDTLYAIVCDLKSHSAIERLRRIKNVEPSK----VRKIASHIF 149 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVai-----------PTDTVYGL~cda~n~~AVerLy~iK~R~~~K----PL~lLv~sl 149 (161)
-..+.+....|++||.++. |-+.- +.-+++|+++++-.+.+=++.... ||+++|.|+
T Consensus 280 ~kslk~~~~lL~~Gg~~iwIaPsGgRdR~d~~~g~--~~papFD~~svd~mR~l~~~s~~ptHfYPlAl~~yDI 351 (426)
T PLN02349 280 TRTLKEMALLLREGGQLIWIAPSGGRDRPDPLTGE--WTPAPFDPSAVDNMRRLTEKSKAPGHFYPLAMLSYDI 351 (426)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCCCCCccCCC--ccCCCCChHHHHHHHHHHHhcCCCccccchHHHhCcc
Confidence 3467788889999998776 31222 456789999999998887664333 688887764
No 18
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=31.84 E-value=55 Score=28.70 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=18.5
Q ss_pred HHHHHHhc-CCEEEEecCceEEEEecCCCHHH
Q 031347 96 PVVELLKE-GAVGVIPTDTLYAIVCDLKSHSA 126 (161)
Q Consensus 96 ~aae~L~~-GgVVaiPTDTVYGL~cda~n~~A 126 (161)
++++.|++ |-=+++=.||.||-+| ..++.|
T Consensus 19 ~ia~~l~~~~~~v~I~gD~tYGaCc-V~D~~a 49 (308)
T TIGR03682 19 EIAQKLEEKGYEVIISGEPCYGACD-LADDEA 49 (308)
T ss_pred HHHHHHHhCCceEEEEcCCceeecc-CChHHH
Confidence 44555544 4448888999999555 444444
No 19
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=30.63 E-value=45 Score=27.87 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCEEEEecCceE
Q 031347 94 LEPVVELLKEGAVGVIPTDTLY 115 (161)
Q Consensus 94 l~~aae~L~~GgVVaiPTDTVY 115 (161)
+.+++++|++|++|++-.|-.+
T Consensus 181 ~~~~~~~Lk~g~~v~~l~Dq~~ 202 (295)
T PF03279_consen 181 IRELIRALKEGGIVGLLGDQDP 202 (295)
T ss_pred HHHHHHHhccCCEEEEEECCCC
Confidence 7889999999999999999654
No 20
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=30.57 E-value=69 Score=30.78 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=34.0
Q ss_pred EEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecC
Q 031347 81 YVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDL 121 (161)
Q Consensus 81 ~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda 121 (161)
++.+||=+....-++.|++.+++||++.+-.--.+-|+.+.
T Consensus 186 vIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL~gn~ 226 (525)
T KOG1253|consen 186 VIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVLAGNA 226 (525)
T ss_pred eEecCCCCCccHHHHHHHHHhhcCCEEEEEecchHhhccCC
Confidence 68899998888999999999999999887655555666654
No 21
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=30.09 E-value=67 Score=28.58 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=51.2
Q ss_pred ccCCcchhhhhhhhccCCCCceeeecCCCCCCCceeeeeeeeccCccccccCCccccccCceEEEEeCCCCCChhhHHHH
Q 031347 18 HSHSHSHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPV 97 (161)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~krLky~~~~f~k~~~~~~~~v~p~~p~~~~l~~a 97 (161)
-+++.|| -|+..|-|-.+-+.+|.|+|--.+ +-.+|.||-.-.+ |+ .+++-.|+|.+.--++ .
T Consensus 36 T~~P~Tf-----lr~Lgpepw~vaYvqPsRRP~DGR-----YGeNPNRLq~y~Q-fQ-----VilKPsP~niQelYL~-S 98 (283)
T PRK09348 36 TFHPATF-----LRALGPEPWNAAYVQPSRRPTDGR-----YGENPNRLQHYYQ-FQ-----VILKPSPDNIQELYLG-S 98 (283)
T ss_pred cCCHHHH-----HHhcCCCccccccccCCCCCCCCC-----cCCCchhhhhhee-eE-----EEEcCCCccHHHHHHH-H
Confidence 4567777 677899999999999998776554 4567777754433 33 4666666665443222 2
Q ss_pred HHHH----hcCCEEE------EecCceEEEE
Q 031347 98 VELL----KEGAVGV------IPTDTLYAIV 118 (161)
Q Consensus 98 ae~L----~~GgVVa------iPTDTVYGL~ 118 (161)
.+.| ++..|-. -||=.-||||
T Consensus 99 L~~lGid~~~hDIRFVEDnWEsPTLGAwGlG 129 (283)
T PRK09348 99 LEALGIDPLEHDIRFVEDNWESPTLGAWGLG 129 (283)
T ss_pred HHHhCCCccccceeEeecCCCCCcccccccc
Confidence 2222 2333322 3666667665
No 22
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=28.37 E-value=68 Score=26.93 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=25.5
Q ss_pred EEEeCCCCCCh--hhHHHHHHHHhcCC--EEEEecCce
Q 031347 81 YVEADPSGADS--WKLEPVVELLKEGA--VGVIPTDTL 114 (161)
Q Consensus 81 ~~~v~p~~p~~--~~l~~aae~L~~Gg--VVaiPTDTV 114 (161)
.+.|+.+++.. ..++++.+.|+++| +++||--|-
T Consensus 113 ~i~VdR~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTR 150 (245)
T PRK15018 113 NLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTR 150 (245)
T ss_pred CeEEeCCCHHHHHHHHHHHHHHHHhCCCEEEEECCccC
Confidence 57888876543 46788889997755 689998775
No 23
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=27.24 E-value=39 Score=24.64 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=18.6
Q ss_pred CCCChhhHHHHHHHHhcCCEEEEecCce
Q 031347 87 SGADSWKLEPVVELLKEGAVGVIPTDTL 114 (161)
Q Consensus 87 ~~p~~~~l~~aae~L~~GgVVaiPTDTV 114 (161)
++-+++.+..+++.++.||++++=+...
T Consensus 21 ~g~~pnal~a~~gtv~gGGllill~p~~ 48 (92)
T PF08351_consen 21 EGFDPNALAALAGTVRGGGLLILLLPPW 48 (92)
T ss_dssp S---HHHHHHHHTTB-TT-EEEEEES-G
T ss_pred CCCCHHHHHHHhcceecCeEEEEEcCCH
Confidence 4557888999999999999998766653
No 24
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=26.84 E-value=85 Score=27.89 Aligned_cols=84 Identities=25% Similarity=0.374 Sum_probs=51.1
Q ss_pred ccCCcchhhhhhhhccCCCCceeeecCCCCCCCceeeeeeeeccCccccccCCccccccCceEEEEeCCCCCChhhHHHH
Q 031347 18 HSHSHSHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPV 97 (161)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~krLky~~~~f~k~~~~~~~~v~p~~p~~~~l~~a 97 (161)
-+|+.|| -|+..|-|-.+-+.+|.|+|--.+ +-.+|.||---.+ |+ .+++-.|+|.++--+ +.
T Consensus 32 T~hPaTf-----lr~Lgpepw~vAYVqPsrRP~DGR-----YGeNPNRLq~y~Q-fQ-----ViiKPsP~niQelYL-~S 94 (279)
T cd00733 32 TFHPATF-----LRALGPEPWNVAYVEPSRRPTDGR-----YGENPNRLQHYYQ-FQ-----VIIKPSPDNIQELYL-ES 94 (279)
T ss_pred cCCHHHH-----HHhcCCCcceeccccCCCCCCCCC-----cCCCchhhhhhee-eE-----EEECCCCccHHHHHH-HH
Confidence 4577777 677899999999999998876554 4566777743333 33 456666665543222 23
Q ss_pred HHHH----hcCCEEE------EecCceEEEE
Q 031347 98 VELL----KEGAVGV------IPTDTLYAIV 118 (161)
Q Consensus 98 ae~L----~~GgVVa------iPTDTVYGL~ 118 (161)
.+.| ++..|-. -||=.-||||
T Consensus 95 L~~lGid~~~hDIRFVEDnWEsPTLGAwGLG 125 (279)
T cd00733 95 LEALGINPKEHDIRFVEDNWESPTLGAWGLG 125 (279)
T ss_pred HHHhCCCccccCeeEeecCCCCCcccccccc
Confidence 3333 3444433 3666666665
No 25
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=26.84 E-value=84 Score=27.97 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=46.6
Q ss_pred EEEEeCCC-CCChhhHHHHHHHHhcCCEEE----EecC----------------ceEEEEecCC------------CHHH
Q 031347 80 MYVEADPS-GADSWKLEPVVELLKEGAVGV----IPTD----------------TLYAIVCDLK------------SHSA 126 (161)
Q Consensus 80 ~~~~v~p~-~p~~~~l~~aae~L~~GgVVa----iPTD----------------TVYGL~cda~------------n~~A 126 (161)
+++.--|. +-++..+++.++.+..|.||. |||. |.|.-+|-|. ++++
T Consensus 142 ~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsyhpg~vpemkgqvyiaegyaseea 221 (343)
T COG4074 142 MIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYHPGTVPEMKGQVYIAEGYASEEA 221 (343)
T ss_pred eEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceeccCCCCCccccCcEEEecccccHHH
Confidence 34444444 557888999999999999986 7773 6677777654 7899
Q ss_pred HHHHHHHhCCCCCCCc
Q 031347 127 IERLRRIKNVEPSKVR 142 (161)
Q Consensus 127 VerLy~iK~R~~~KPL 142 (161)
++.||++-+....+.|
T Consensus 222 vn~lyelg~karg~af 237 (343)
T COG4074 222 VNALYELGEKARGLAF 237 (343)
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999999765555533
No 26
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=26.39 E-value=1.2e+02 Score=27.12 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=35.7
Q ss_pred hHHHHHHHHhcCCEEEE-ecCceEE--------EEecCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 031347 93 KLEPVVELLKEGAVGVI-PTDTLYA--------IVCDLKSHSAIERLRRIKNVEPSKVRKIAS 146 (161)
Q Consensus 93 ~l~~aae~L~~GgVVai-PTDTVYG--------L~cda~n~~AVerLy~iK~R~~~KPL~lLv 146 (161)
..+.+++.|.+|+||.. -.-.=|| |-+||.+++..++|=+.|+|..=.||.=.+
T Consensus 253 ~~~~~A~lLa~gkiVgwfqGr~EfGPRALGnRSILAdP~~~~~~d~iN~~iKRE~fRPfAPsv 315 (360)
T PF02543_consen 253 LAEQVAELLADGKIVGWFQGRMEFGPRALGNRSILADPRSPDMKDRINRRIKREWFRPFAPSV 315 (360)
T ss_dssp HHHHHHHHHHTT--EEEE-SS-B-SSS--SSEEEEEESS-SSHHHHHHHTTS--TT---EEEE
T ss_pred HHHHHHHHHHcCCEEEEEecCccccCccccccccccCCCChHHHHHHhhhcCccccCCcCcch
Confidence 56889999999999874 3333343 789999999999999999999999987655
No 27
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=26.37 E-value=93 Score=24.16 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=31.9
Q ss_pred EEEEeCCCCCChhhHHHHHHHHhcCC---EEEEecCceEEEEecCCCHHHHHHHHH
Q 031347 80 MYVEADPSGADSWKLEPVVELLKEGA---VGVIPTDTLYAIVCDLKSHSAIERLRR 132 (161)
Q Consensus 80 ~~~~v~p~~p~~~~l~~aae~L~~Gg---VVaiPTDTVYGL~cda~n~~AVerLy~ 132 (161)
-.+.|+.+++ ...++.+.+.|++|+ +++||--|--.. .. -+.+..++..
T Consensus 70 g~i~V~r~~~-~~~~~~~~~~l~~g~~~~l~IFPEGtR~~~--~~-fk~G~~~lA~ 121 (163)
T cd07988 70 GGIPVDRSRA-GGLVEQVVEEFRRREEFVLAIAPEGTRSKV--DK-WKTGFYHIAR 121 (163)
T ss_pred CCEEeEcCCc-ccHHHHHHHHHHhCCCcEEEEeCCCCCCCC--cC-hhhHHHHHHH
Confidence 3577777764 346788889998864 899998886552 12 2345555443
No 28
>PLN02161 beta-amylase
Probab=26.36 E-value=5.5e+02 Score=24.91 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=37.9
Q ss_pred ChhhHHHHHHHHhcCCEEEEecCceEEEEecCC----CHHHHHHHHHHhCC
Q 031347 90 DSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLK----SHSAIERLRRIKNV 136 (161)
Q Consensus 90 ~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~----n~~AVerLy~iK~R 136 (161)
+.+.++.-...|++.||=.+=.|..||++-... |=++-.+|+++=+.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~ 165 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISE 165 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHH
Confidence 455678888999999999999999999998532 56688888887654
No 29
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=25.77 E-value=1.5e+02 Score=19.47 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=22.5
Q ss_pred EEEEeCCC-CCC-hhhHHHHHHHHhcCCEEEE
Q 031347 80 MYVEADPS-GAD-SWKLEPVVELLKEGAVGVI 109 (161)
Q Consensus 80 ~~~~v~p~-~p~-~~~l~~aae~L~~GgVVai 109 (161)
.++-+.|. ..+ +..+++..+.+.+||-+++
T Consensus 37 tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 37 TLLVIGPDLRLSEPEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred EEEEEeCCCCCCchHHHHHHHHHHHcCCEEEE
Confidence 46666776 445 3778888899999998876
No 30
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=25.63 E-value=74 Score=25.15 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHhcCCEEEEecCce
Q 031347 91 SWKLEPVVELLKEGAVGVIPTDTL 114 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVaiPTDTV 114 (161)
...+.++.++|+.||.+.+-||..
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCH
Confidence 356889999999999999988765
No 31
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=25.38 E-value=72 Score=24.09 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=27.9
Q ss_pred EEEEeCCCCC--ChhhHHHHHHHHhcCCEEEEecC-ceEEEEe
Q 031347 80 MYVEADPSGA--DSWKLEPVVELLKEGAVGVIPTD-TLYAIVC 119 (161)
Q Consensus 80 ~~~~v~p~~p--~~~~l~~aae~L~~GgVVaiPTD-TVYGL~c 119 (161)
.++-|-.+-| +...+++|.+.|+++.+|+-|++ .+|-|..
T Consensus 62 ~vvliGsD~P~l~~~~l~~A~~~L~~~d~VlgPa~DGGy~LiG 104 (122)
T PF09837_consen 62 PVVLIGSDCPDLTPDDLEQAFEALQRHDVVLGPAEDGGYYLIG 104 (122)
T ss_dssp EEEEE-SS-TT--HHHHHHHHHHTTT-SEEEEEBTTSSEEEEE
T ss_pred cEEEEcCCCCCCCHHHHHHHHHHhccCCEEEeeccCCCEEEEe
Confidence 5666777766 46789999999999999999985 4554443
No 32
>PRK10148 hypothetical protein; Provisional
Probab=25.00 E-value=1.2e+02 Score=23.47 Aligned_cols=33 Identities=12% Similarity=-0.083 Sum_probs=24.2
Q ss_pred ChhhHHHHHHHHhcCCEEEEecCc-----eEEEEecCC
Q 031347 90 DSWKLEPVVELLKEGAVGVIPTDT-----LYAIVCDLK 122 (161)
Q Consensus 90 ~~~~l~~aae~L~~GgVVaiPTDT-----VYGL~cda~ 122 (161)
+.+.++.+.+.|.+||-|+.|-+. .||.+.|++
T Consensus 95 d~ee~~~~~~aLa~gg~v~mpl~~~~wg~~~g~v~D~f 132 (147)
T PRK10148 95 DVEEGKRWFDNLAANGKIEMAWQETFWAHGFGKVTDKF 132 (147)
T ss_pred CHHHHHHHHHHhhCCCEEEecchhcchhhccEEEECCC
Confidence 445577888999999998887654 566666654
No 33
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=24.73 E-value=36 Score=22.17 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.9
Q ss_pred ChhhHHHHHHHHhcCCEEEE
Q 031347 90 DSWKLEPVVELLKEGAVGVI 109 (161)
Q Consensus 90 ~~~~l~~aae~L~~GgVVai 109 (161)
....++++.++|+.||.++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 35678999999999999886
No 34
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=24.28 E-value=1.2e+02 Score=23.96 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=24.4
Q ss_pred EEEeCCCCCC----------hhhHHHHHHHHhcCCE-EEEecCce
Q 031347 81 YVEADPSGAD----------SWKLEPVVELLKEGAV-GVIPTDTL 114 (161)
Q Consensus 81 ~~~v~p~~p~----------~~~l~~aae~L~~GgV-VaiPTDTV 114 (161)
.+.|+.++++ ...++.+.+.|++|.. ++||--|.
T Consensus 77 ~ipI~r~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~l~IFPEGtr 121 (203)
T cd07992 77 AIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPEGGS 121 (203)
T ss_pred ceEeEcCCCcccccccchhHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 4666665443 3567789999999986 67888774
No 35
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=23.35 E-value=1e+02 Score=21.15 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCEEEEec
Q 031347 94 LEPVVELLKEGAVGVIPT 111 (161)
Q Consensus 94 l~~aae~L~~GgVVaiPT 111 (161)
++++.+.|.+||+|.+|=
T Consensus 1 ~eE~k~~i~~gg~v~~pw 18 (68)
T PF09180_consen 1 YEEFKEAIEKGGFVLVPW 18 (68)
T ss_dssp HHHHHHHHHTSSEEEEEE
T ss_pred ChHHHHHHhCCCEEEEEc
Confidence 367788889999999884
No 36
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=23.24 E-value=58 Score=28.90 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=26.2
Q ss_pred ChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHH
Q 031347 90 DSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLR 131 (161)
Q Consensus 90 ~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy 131 (161)
|.+.|+.+.+.|+.||+++|-|=|+- .--|++-|++..
T Consensus 267 Q~~iL~~a~~~lk~GG~LVYSTCS~~----~eENE~vV~~~L 304 (355)
T COG0144 267 QKEILAAALKLLKPGGVLVYSTCSLT----PEENEEVVERFL 304 (355)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCc----hhcCHHHHHHHH
Confidence 55678899999999999999874441 123555555444
No 37
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=23.20 E-value=2.7e+02 Score=27.10 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=57.1
Q ss_pred ccCccccc--cCCccccccCc----------eEEEEeCCCCCChhhHHHHHHHHhcCCEEE-EecCceEE--------EE
Q 031347 60 KRSPKRLK--YSAPQFTKEGG----------LMYVEADPSGADSWKLEPVVELLKEGAVGV-IPTDTLYA--------IV 118 (161)
Q Consensus 60 kr~~krLk--y~~~~f~k~~~----------~~~~~v~p~~p~~~~l~~aae~L~~GgVVa-iPTDTVYG--------L~ 118 (161)
+.+|+||. |=++.+..+.. ..+.+++. ..+.+++.|.+|.+|. +-.---|| |.
T Consensus 340 ~~~~~~l~~~ylGp~ys~~~ve~~L~~~~~~~~y~~~~~------l~~~va~~LadgkvVgwfqGRmEfGPRALGnRSIL 413 (555)
T COG2192 340 AARPPRLEHVYLGPEYSDEEVEKALKRHAPDLEYERVDD------LPDRVAELLADGKVVGWFQGRMEFGPRALGNRSIL 413 (555)
T ss_pred CCCcccccccccCcccChHHHHHHHhhhccCceEEeccc------HHHHHHHHHhCCCeEEEEeeccccCccccCCceee
Confidence 34466776 66666554331 12344433 4688999999999987 56665565 78
Q ss_pred ecCCCHHHHHHHHHHhC-CCCCCCcEEEe
Q 031347 119 CDLKSHSAIERLRRIKN-VEPSKVRKIAS 146 (161)
Q Consensus 119 cda~n~~AVerLy~iK~-R~~~KPL~lLv 146 (161)
+||.++..-++|-...+ |+.=.||.-.|
T Consensus 414 adPr~~~~kd~iN~~vK~Re~FrPFAPsi 442 (555)
T COG2192 414 ADPRDPGMKDKINLKVKFREGFRPFAPSI 442 (555)
T ss_pred cCCCChHHHHHHHHHhcccCccCCcCcch
Confidence 89999999999987766 99888886544
No 38
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=23.15 E-value=2.5e+02 Score=24.22 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhcCCEEEEecC------ceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHH
Q 031347 92 WKLEPVVELLKEGAVGVIPTD------TLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFII 154 (161)
Q Consensus 92 ~~l~~aae~L~~GgVVaiPTD------TVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~ 154 (161)
..++++++.|++|+.|++=-| +-.-+.+..-.++.+.-+.+ ....|+.++-+.+.+.+
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r-----~~~GliCva~~~~~a~~ 82 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIR-----DGSGIVCLCLPGETLDR 82 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHH-----HCCccEEeeCCHHHHhh
Confidence 458999999999999988764 33344444444544443332 12345555445444443
No 39
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=22.89 E-value=93 Score=25.92 Aligned_cols=27 Identities=22% Similarity=0.216 Sum_probs=22.5
Q ss_pred ChhhHHHHHHHHhcCCEEEEecCceEE
Q 031347 90 DSWKLEPVVELLKEGAVGVIPTDTLYA 116 (161)
Q Consensus 90 ~~~~l~~aae~L~~GgVVaiPTDTVYG 116 (161)
....++.+.+.|.+|..|++.+|..|=
T Consensus 74 ~~~~~~~l~~~l~~g~pv~~~~D~~~l 100 (317)
T PF14399_consen 74 PDEAWEELKEALDAGRPVIVWVDMYYL 100 (317)
T ss_pred HHHHHHHHHHHHhCCCceEEEeccccC
Confidence 355778899999999999999998764
No 40
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=22.83 E-value=2.4e+02 Score=23.44 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCEEEEecCc------eEEEEecCCCHHHHHHHH
Q 031347 94 LEPVVELLKEGAVGVIPTDT------LYAIVCDLKSHSAIERLR 131 (161)
Q Consensus 94 l~~aae~L~~GgVVaiPTDT------VYGL~cda~n~~AVerLy 131 (161)
|+++++.|++|+.|++=.|. ..-+.+..-+++.+.-+.
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~ 44 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMI 44 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHH
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHH
Confidence 57899999999999987753 455555555555554443
No 41
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=22.65 E-value=81 Score=26.87 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=25.5
Q ss_pred hhHHHHHHHHhcCCEEEEecCceE----EEEecCCCH
Q 031347 92 WKLEPVVELLKEGAVGVIPTDTLY----AIVCDLKSH 124 (161)
Q Consensus 92 ~~l~~aae~L~~GgVVaiPTDTVY----GL~cda~n~ 124 (161)
..+..+++.|++|++|++-.|-.+ |+-++-+..
T Consensus 180 ~~~r~i~~aLk~g~~v~il~Dq~~~~~~gv~v~FfG~ 216 (305)
T TIGR02208 180 AGIKALLASLKRGESGYYLPDEDHGPEQSVFVPFFAT 216 (305)
T ss_pred hhHHHHHHHHhCCCeEEEeCCCCCCCCCCeEeccCCC
Confidence 347889999999999999998875 455554443
No 42
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.23 E-value=53 Score=29.02 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=31.5
Q ss_pred hhHHHHHHHHhcCCEEEEecCceEEEEec----C-----CCHHHHHHHHHHhC
Q 031347 92 WKLEPVVELLKEGAVGVIPTDTLYAIVCD----L-----KSHSAIERLRRIKN 135 (161)
Q Consensus 92 ~~l~~aae~L~~GgVVaiPTDTVYGL~cd----a-----~n~~AVerLy~iK~ 135 (161)
+.+...++.|++|+.|.+-.|-.||-+.. - .-..+..+|-..-+
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~ 234 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTG 234 (308)
T ss_pred hhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhC
Confidence 45889999999999999988888876655 1 12345556655554
No 43
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=21.49 E-value=1.2e+02 Score=20.52 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=23.3
Q ss_pred EEeCCCC--CChhhHHHHHHHHhcCCE-EEEecCceEE
Q 031347 82 VEADPSG--ADSWKLEPVVELLKEGAV-GVIPTDTLYA 116 (161)
Q Consensus 82 ~~v~p~~--p~~~~l~~aae~L~~GgV-VaiPTDTVYG 116 (161)
+.++... .+.+.++++.+.|++|+. +++|-.+..-
T Consensus 51 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ifPeG~~~~ 88 (118)
T smart00563 51 IFIDRENGRLARAALREAVRLLRDGGWLLIFPEGTRSR 88 (118)
T ss_pred eEEeCCCcHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 4444433 345677888888988875 7788877543
No 44
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=21.26 E-value=2.2e+02 Score=23.54 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=28.7
Q ss_pred EEEeCCCCCC-hhhHHHHHHHHhcCCEEEEecCceEEEEecCCC
Q 031347 81 YVEADPSGAD-SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKS 123 (161)
Q Consensus 81 ~~~v~p~~p~-~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n 123 (161)
++-+|...++ ...++.+.+.|+.||+|++=.--..|.+.++.+
T Consensus 147 ~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~ 190 (234)
T PLN02781 147 FAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEED 190 (234)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCccc
Confidence 3444443222 345678899999999988854445688888753
No 45
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=20.68 E-value=1.5e+02 Score=20.25 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHhcCCEEEEecC
Q 031347 91 SWKLEPVVELLKEGAVGVIPTD 112 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVaiPTD 112 (161)
.+...++++.|++|.+|++=.+
T Consensus 9 ~~D~~~i~~~l~~g~~Vivnl~ 30 (73)
T PF04472_consen 9 FEDAREIVDALREGKIVIVNLE 30 (73)
T ss_dssp GGGHHHHHHHHHTT--EEEE-T
T ss_pred HHHHHHHHHHHHcCCEEEEECC
Confidence 3457788899999988886544
No 46
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=20.38 E-value=2.3e+02 Score=20.09 Aligned_cols=25 Identities=4% Similarity=-0.066 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEeCC
Q 031347 124 HSAIERLRRIKNVEPSKVRKIASHI 148 (161)
Q Consensus 124 ~~AVerLy~iK~R~~~KPL~lLv~s 148 (161)
.+.+++.+...+.+.++|++++|.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~vv~~c~~ 88 (122)
T cd01448 64 PEEFAELLGSLGISNDDTVVVYDDG 88 (122)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCC
Confidence 3444555444445555666666644
No 47
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=20.35 E-value=78 Score=26.50 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHH
Q 031347 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~ 132 (161)
.+.++.+.+.|+.||.++|-|=|+ ....|++-++++.+
T Consensus 179 ~~iL~~a~~~lkpgG~lvYstcs~----~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 179 KELIDSAFDALKPGGVLVYSTCSL----EPEENEAVVDYLLE 216 (264)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCC----ChHHHHHHHHHHHH
Confidence 347788889999999999776543 11224455555443
No 48
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=20.07 E-value=2.8e+02 Score=23.19 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=25.7
Q ss_pred hHHHHHHHHhcCCEEEEecCce------EEEEecCCCHHHHHHHH
Q 031347 93 KLEPVVELLKEGAVGVIPTDTL------YAIVCDLKSHSAIERLR 131 (161)
Q Consensus 93 ~l~~aae~L~~GgVVaiPTDTV------YGL~cda~n~~AVerLy 131 (161)
.++++++.|++|+.|++=.|-- .-+.+..-.++.+.-+.
T Consensus 4 ~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~ 48 (199)
T TIGR00506 4 RVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMR 48 (199)
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHH
Confidence 4889999999999999876532 33444444555554443
Done!