Query 031347
Match_columns 161
No_of_seqs 158 out of 1356
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k7j_A Protein YCIO, protein T 99.9 3.8E-23 1.3E-27 167.4 11.0 78 79-156 2-79 (206)
2 2eqa_A Hypothetical protein ST 99.9 4.6E-22 1.6E-26 173.9 10.2 78 79-156 2-79 (352)
3 1jcu_A Conserved protein MTH16 99.9 6.6E-23 2.3E-27 166.4 4.4 77 79-155 1-77 (208)
4 1hru_A YRDC gene product; prot 99.8 1.7E-21 5.9E-26 155.3 5.4 71 86-156 2-72 (188)
5 3l7v_A Putative uncharacterize 99.7 2E-18 6.9E-23 148.1 8.5 63 92-156 44-107 (295)
6 3vth_A Hydrogenase maturation 99.7 1.8E-16 6.1E-21 149.6 9.6 66 90-156 201-266 (761)
7 3ttc_A HYPF, transcriptional r 99.6 6.9E-16 2.4E-20 143.9 7.0 68 91-159 111-180 (657)
8 4g9i_A Hydrogenase maturation 99.5 1.1E-14 3.9E-19 137.3 8.9 66 91-157 200-265 (772)
9 2bh1_X General secretion pathw 44.0 69 0.0024 21.4 7.1 51 99-153 20-73 (96)
10 3ven_A O-carbamoyltransferase 35.7 40 0.0014 31.0 4.8 55 92-146 397-461 (576)
11 3p3d_A Nucleoporin 53; structu 32.3 37 0.0013 25.8 3.3 38 95-136 73-110 (132)
12 1snn_A DHBP synthase, 3,4-dihy 27.2 1.1E+02 0.0039 25.0 5.6 39 93-131 3-47 (227)
13 2cob_A LCOR protein; MLR2, KIA 26.5 7.7 0.00026 26.8 -1.3 28 90-117 15-42 (70)
14 1tks_A 3,4-dihydroxy-2-butanon 26.1 1.3E+02 0.0045 24.2 5.8 40 92-131 6-51 (204)
15 2fca_A TRNA (guanine-N(7)-)-me 25.0 54 0.0018 24.6 3.1 23 91-113 133-155 (213)
16 1g57_A DHBP synthase, 3,4-dihy 24.3 1.4E+02 0.0047 24.2 5.6 41 91-131 13-59 (217)
17 2ftp_A Hydroxymethylglutaryl-C 24.0 71 0.0024 26.0 3.9 54 90-148 157-212 (302)
18 3mio_A DHBP synthase, 3,4-dihy 22.0 1.8E+02 0.006 23.5 5.8 41 92-132 5-51 (206)
19 1vz0_A PARB, chromosome partit 22.0 1.2E+02 0.0042 23.9 4.8 64 82-152 31-102 (230)
20 1iuq_A Glycerol-3-phosphate ac 21.4 80 0.0027 27.6 3.9 47 91-137 209-264 (367)
21 1yzh_A TRNA (guanine-N(7)-)-me 20.9 57 0.002 24.1 2.5 23 91-113 136-158 (214)
22 3p04_A Uncharacterized BCR; SE 20.7 73 0.0025 22.3 2.8 32 80-113 6-37 (87)
23 1tsj_A Conserved hypothetical 20.5 1.3E+02 0.0043 21.5 4.3 27 90-116 82-109 (139)
24 1u7i_A Hypothetical protein; s 20.5 1.5E+02 0.0051 20.3 4.5 27 90-116 88-115 (136)
25 4fn4_A Short chain dehydrogena 20.4 1.4E+02 0.0049 23.8 5.0 36 91-132 41-76 (254)
26 1dcu_A Fructose-1,6-bisphospha 20.2 69 0.0024 27.7 3.2 59 93-156 273-353 (357)
No 1
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=99.89 E-value=3.8e-23 Score=167.35 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=74.4
Q ss_pred eEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 79 LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 79 ~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
.+++++++++++.+.+++++++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|+++++.|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~a~~~L~~G~iva~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~ 79 (206)
T 1k7j_A 2 SQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYS 79 (206)
T ss_dssp CEEEECCSSSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHB
T ss_pred CceEecCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHh
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999997653
No 2
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Probab=99.86 E-value=4.6e-22 Score=173.85 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=74.8
Q ss_pred eEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 79 LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 79 ~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
++++++++++++.+.+++++++|++||+|+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|++++..|.
T Consensus 2 t~~~~i~~~~~~~~~i~~aa~~L~~G~iVa~PTeTvYGLg~da~n~~AV~rI~~~K~Rp~~kPliv~v~d~~~l~~~~ 79 (352)
T 2eqa_A 2 TQIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVA 79 (352)
T ss_dssp CEEEECCSSSCCHHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHE
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHcCCEEEEECCCEeEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999998664
No 3
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=99.86 E-value=6.6e-23 Score=166.38 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=72.0
Q ss_pred eEEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHH
Q 031347 79 LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIW 155 (161)
Q Consensus 79 ~~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~ 155 (161)
|+++++++++++.+.+++++++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|+++++.|
T Consensus 1 ~~~~~~~~~~~~~~~i~~a~~~L~~G~vVa~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~v~~~~~~~~~ 77 (208)
T 1jcu_A 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRF 77 (208)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTT
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999998543
No 4
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=99.83 E-value=1.7e-21 Score=155.31 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=65.7
Q ss_pred CCCCChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 86 p~~p~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
+++++.+.+++++++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|+++++.|.
T Consensus 2 ~~~~~~~~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~ 72 (188)
T 1hru_A 2 NNNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYI 72 (188)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999997663
No 5
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}
Probab=99.75 E-value=2e-18 Score=148.15 Aligned_cols=63 Identities=22% Similarity=0.192 Sum_probs=59.2
Q ss_pred hhHHHHHHHHh-cCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 92 WKLEPVVELLK-EGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 92 ~~l~~aae~L~-~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
+.+++|+++|+ +||||+|||||+|||+| +|++||+|||++|+|+.+|||+|||+|+++++.|.
T Consensus 44 ~~i~~Aa~~L~~~GgIVa~PTdTvYGL~c--~n~~AV~rL~~iK~Rp~~KPl~vmv~dl~~l~~~~ 107 (295)
T 3l7v_A 44 NLSQEGFEIVKGEGGVIVCPTKVGYIIMT--SDKKGLERKFEAKKRNRNKPGVVLCGSMEELRALA 107 (295)
T ss_dssp SCCHHHHHHHHSTTCEEEEEETTEEEEEE--SSHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHB
T ss_pred HHHHHHHHHHHHCCCEEEEECCCEEEEEE--cCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHh
Confidence 34789999999 99999999999999999 89999999999999999999999999999997653
No 6
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=99.66 E-value=1.8e-16 Score=149.64 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHH
Q 031347 90 DSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWR 156 (161)
Q Consensus 90 ~~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~ 156 (161)
+.+.|++++++|++||||++||||+|||+||++|++||+|||++|+|+ +|||+||++|+++++.|.
T Consensus 201 ~~~~i~~aa~~L~~G~IVa~pt~t~YgL~cda~n~~AV~rL~~~K~Rp-~KPl~vmv~dl~~l~~~~ 266 (761)
T 3vth_A 201 FDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY-GKPFAVMMRDVEEVKKYC 266 (761)
T ss_dssp CSCHHHHHHHHHHTTCCEEEECSSSEEEECBTTCHHHHHHHHHHHTCC-SSCCCEECSSHHHHHHHB
T ss_pred chHHHHHHHHHHHcCCEEEEECCcEEEEEecCCCHHHHHHHHHHhCCC-CCCeEEEeCCHHHHHHHc
Confidence 456799999999999999999999999999999999999999999999 999999999999997653
No 7
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=99.60 E-value=6.9e-16 Score=143.85 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHH--HHHHHhh
Q 031347 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIF--IIWRLMQ 159 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l--~~~~lmk 159 (161)
.+.+++++++|++||||++||||+|||+||++|++||+|||++|+|+ +|||+|||+|++++ ..+++|+
T Consensus 111 ~~~i~~aa~~L~~G~IVa~pt~ggYgL~cda~n~~AV~rL~~~K~Rp-~KPlavm~~dl~~v~~~~~~ll~ 180 (657)
T 3ttc_A 111 EAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRP-AKPLAVMLPVADGLPDAARQLLT 180 (657)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSEEEEEETTCHHHHHHHHHHTTCS-SSCCCEECSCCTTSCHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCEEEEECCceeEEEeecCCHHHHHHHHHHhCCC-CCCEEEEECChHHCCHHHHHHHh
Confidence 45789999999999999999999999999999999999999999998 89999999998866 2445554
No 8
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=99.54 E-value=1.1e-14 Score=137.35 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHHHHHH
Q 031347 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRL 157 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~~~~l 157 (161)
.+.|++++++|++|+||++||+|+|||+||++|++||+||++.|+|+ +|||+||++|+++++.|..
T Consensus 200 ~~~i~~a~~~l~~G~iva~kg~ggy~L~cda~n~~aV~~lr~~K~Rp-~kP~avm~~d~~~~~~~~~ 265 (772)
T 4g9i_A 200 GDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTFRP-QKPFAIMAKDIETVKSFAY 265 (772)
T ss_dssp THHHHHHHHHHTTSCCEEECCSSSBEEECCTTCHHHHHHHHHHTTCS-SSCCEEECSSHHHHHHHSC
T ss_pred hHHHHHHHHHHHcCCEEEEecCCeeEEEEecCCHHHHHHHHHhhCCC-CCCcEEEeCCHHHHHHHhc
Confidence 46799999999999999999999999999999999999999999997 7999999999999987653
No 9
>2bh1_X General secretion pathway protein E,; transport protein, type II secretion, EPS, transmembrane, transport, ATP-binding; 2.4A {Vibrio cholerae} SCOP: d.52.10.1
Probab=44.04 E-value=69 Score=21.37 Aligned_cols=51 Identities=8% Similarity=-0.052 Sum_probs=39.4
Q ss_pred HHHhcCCEEEEecC--c-eEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHHH
Q 031347 99 ELLKEGAVGVIPTD--T-LYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIFI 153 (161)
Q Consensus 99 e~L~~GgVVaiPTD--T-VYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l~ 153 (161)
+.+++.+++.+--+ + ++-..+||+|..+++.|..+=+ +++.+.+.+.+++.
T Consensus 20 ~~arr~~vlPl~~~~~~~l~va~~dP~~~~aldel~~~~g----~~v~~~va~~~~i~ 73 (96)
T 2bh1_X 20 SFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVK----HAFQLIELSQAEFE 73 (96)
T ss_dssp HHHHHHTEEEEECSSSCCEEEEECSSCCHHHHHHHHHHHC----SCEEEEECCHHHHH
T ss_pred HHHHHCCEEEEEECCCcEEEEEEcCCCCHHHHHHHHHHhC----CCceEEEcCHHHHH
Confidence 45677788766544 4 6677899999999999987765 46888888988885
No 10
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=35.69 E-value=40 Score=30.98 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhcCCEEE-EecCceEE--------EEecCCCHHHHHHHH-HHhCCCCCCCcEEEe
Q 031347 92 WKLEPVVELLKEGAVGV-IPTDTLYA--------IVCDLKSHSAIERLR-RIKNVEPSKVRKIAS 146 (161)
Q Consensus 92 ~~l~~aae~L~~GgVVa-iPTDTVYG--------L~cda~n~~AVerLy-~iK~R~~~KPL~lLv 146 (161)
+..+.+++.|.+|+||. +-.-.=|| |-+||.+++..++|- +||+|..=.||.=.|
T Consensus 397 ~~~~~~A~~la~g~vvgw~qGr~EfGPRALG~RSILadP~~~~~~~~lN~~iK~RE~fRPfAP~v 461 (576)
T 3ven_A 397 NLEREVAALIASGKVVGWAQGRGEVGPRALGQRSLLGSAHSPTMRDHINLRVKDREWWRPFAPSM 461 (576)
T ss_dssp THHHHHHHHHHTTCCEEEECSSCBCSSSCCSSEEEEEESSCSSHHHHHHHTTSCCCTTCCCCEEE
T ss_pred cHHHHHHHHHhCCCEEEEEecCccccccccccceeecCCCChHHHHHHHHHhcCCCccCCcChhh
Confidence 34688999999999986 44444454 789999999999999 799999999987444
No 11
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=32.27 E-value=37 Score=25.78 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHHHhCC
Q 031347 95 EPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNV 136 (161)
Q Consensus 95 ~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~iK~R 136 (161)
..|.++|+.+|.|+ +. +-+||-|.+++++++|-..|-.
T Consensus 73 ~~A~rAL~~NG~ii---~G-~mIGV~Py~~~~ve~l~~~~~~ 110 (132)
T 3p3d_A 73 ASAVDALLENGAVF---NG-VLLGVIPYTKDAVERLQKRKLT 110 (132)
T ss_dssp HHHHHHHTTTTCEE---TT-EECEEEECCHHHHHHHC-----
T ss_pred HHHHHHHHhCCeEe---Cc-EEEEEEECCHHHHHHHhcCCcc
Confidence 46889998888886 33 4999999999999999877654
No 12
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=27.24 E-value=1.1e+02 Score=24.99 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcCCEEEEecC------ceEEEEecCCCHHHHHHHH
Q 031347 93 KLEPVVELLKEGAVGVIPTD------TLYAIVCDLKSHSAIERLR 131 (161)
Q Consensus 93 ~l~~aae~L~~GgVVaiPTD------TVYGL~cda~n~~AVerLy 131 (161)
.+++|++.|++|+.|++=-| +-.-+.+..-.++.+.-+.
T Consensus 3 ~ie~Ai~alr~G~~Viv~DdedREnEgDli~aAe~~Tpe~i~fm~ 47 (227)
T 1snn_A 3 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMR 47 (227)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHH
Confidence 48899999999999988665 5455555555666555443
No 13
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=26.53 E-value=7.7 Score=26.75 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=23.3
Q ss_pred ChhhHHHHHHHHhcCCEEEEecCceEEE
Q 031347 90 DSWKLEPVVELLKEGAVGVIPTDTLYAI 117 (161)
Q Consensus 90 ~~~~l~~aae~L~~GgVVaiPTDTVYGL 117 (161)
+.+.|.+|++++++|.+=+..+--.||+
T Consensus 15 te~~L~~Ai~aVr~g~mS~~~Aak~yGV 42 (70)
T 2cob_A 15 NSEILEEAISVVMSGKMSVSKAQSIYGI 42 (70)
T ss_dssp CHHHHHHHHHHHHTTSSCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHcCCccHHHHHHHhCC
Confidence 4566899999999998877788888887
No 14
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=26.07 E-value=1.3e+02 Score=24.18 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=31.2
Q ss_pred hhHHHHHHHHhcCCEEEEecC------ceEEEEecCCCHHHHHHHH
Q 031347 92 WKLEPVVELLKEGAVGVIPTD------TLYAIVCDLKSHSAIERLR 131 (161)
Q Consensus 92 ~~l~~aae~L~~GgVVaiPTD------TVYGL~cda~n~~AVerLy 131 (161)
..+++|++.|++|+.|++=.| +-.-+.+..-.++.+.-+.
T Consensus 6 ~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~ 51 (204)
T 1tks_A 6 TPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLV 51 (204)
T ss_dssp CCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHH
T ss_pred hhHHHHHHHHHCCCeEEEEeCCCCCCCEEEEEEhhhCCHHHHHHHH
Confidence 458999999999999998776 5566777777777776554
No 15
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=24.96 E-value=54 Score=24.62 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHhcCCEEEEecCc
Q 031347 91 SWKLEPVVELLKEGAVGVIPTDT 113 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVaiPTDT 113 (161)
...++++.+.|+.||.+++-||.
T Consensus 133 ~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 133 SHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp HHHHHHHHHHHTTSCEEEEEESC
T ss_pred HHHHHHHHHHcCCCCEEEEEeCC
Confidence 45688999999999999998764
No 16
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=24.28 E-value=1.4e+02 Score=24.24 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHhcCCEEEEecC------ceEEEEecCCCHHHHHHHH
Q 031347 91 SWKLEPVVELLKEGAVGVIPTD------TLYAIVCDLKSHSAIERLR 131 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVaiPTD------TVYGL~cda~n~~AVerLy 131 (161)
...+++|++.|++|..|++=.| +-.-+.+.--.++.++-+.
T Consensus 13 ~~~ie~Ai~~lr~G~~Viv~DdedREnEgdli~aAe~~T~e~i~fm~ 59 (217)
T 1g57_A 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTI 59 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCcCEEEEEEhhhCCHHHHHHHH
Confidence 4568999999999999998775 4456666666777776664
No 17
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=23.99 E-value=71 Score=26.04 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=34.5
Q ss_pred ChhhHHHHHHHHhcCCE--EEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCC
Q 031347 90 DSWKLEPVVELLKEGAV--GVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHI 148 (161)
Q Consensus 90 ~~~~l~~aae~L~~GgV--VaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~s 148 (161)
+.+.+.+.++.+.+-|+ |.++ ||+ |+ . .-.+..+.+..+|++-++-||.+++.|
T Consensus 157 ~~~~~~~~~~~~~~~G~d~i~l~-DT~-G~-~--~P~~~~~lv~~l~~~~~~~~l~~H~Hn 212 (302)
T 2ftp_A 157 DPRQVAWVARELQQMGCYEVSLG-DTI-GV-G--TAGATRRLIEAVASEVPRERLAGHFHD 212 (302)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE-ESS-SC-C--CHHHHHHHHHHHTTTSCGGGEEEEEBC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-CCC-CC-c--CHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 44555566665555555 6666 666 55 2 224456777788887656799999855
No 18
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=22.03 E-value=1.8e+02 Score=23.46 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhcCCEEEEecC------ceEEEEecCCCHHHHHHHHH
Q 031347 92 WKLEPVVELLKEGAVGVIPTD------TLYAIVCDLKSHSAIERLRR 132 (161)
Q Consensus 92 ~~l~~aae~L~~GgVVaiPTD------TVYGL~cda~n~~AVerLy~ 132 (161)
..+++|++.|++|+.|++=.| +-.-+.+..-.++.++-+.+
T Consensus 5 ~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~ 51 (206)
T 3mio_A 5 DSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVR 51 (206)
T ss_dssp CCHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHHH
Confidence 358999999999999998765 55566666667766665543
No 19
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=21.98 E-value=1.2e+02 Score=23.90 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=39.1
Q ss_pred EEeCCCCC----ChhhHHHHHHHHhcCC----EEEEecCceEEEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHHHH
Q 031347 82 VEADPSGA----DSWKLEPVVELLKEGA----VGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFSIF 152 (161)
Q Consensus 82 ~~v~p~~p----~~~~l~~aae~L~~Gg----VVaiPTDTVYGL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~~l 152 (161)
+..+|.+| +.+.+++.++.++..| |+|.|.+..|-|.+= -.|+..+|.- .-+.+.+++.+.++-
T Consensus 31 I~~~~~npR~~~~~~~~~eLa~SI~~~G~l~PI~V~~~~g~y~Ii~G------~rR~~Aa~~l-g~~~Ip~iv~~~~d~ 102 (230)
T 1vz0_A 31 IRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAG------ERRYRAALMA-GLQEVPAVVKDLTDR 102 (230)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEETTEEEEEEC------HHHHHHHHHH-TCSEEEEEECCCCHH
T ss_pred cccCCCCCCccCCHHHHHHHHHHHHHcCceeCeEEEEeCCEEEEEeC------HHHHHHHHHc-CCceeeEEEEeCCHH
Confidence 44455554 3446778888888777 477887667888773 2555555543 233566777555443
No 20
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=21.43 E-value=80 Score=27.64 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHhcCC--EEEEecCceEE-------EEecCCCHHHHHHHHHHhCCC
Q 031347 91 SWKLEPVVELLKEGA--VGVIPTDTLYA-------IVCDLKSHSAIERLRRIKNVE 137 (161)
Q Consensus 91 ~~~l~~aae~L~~Gg--VVaiPTDTVYG-------L~cda~n~~AVerLy~iK~R~ 137 (161)
...+.++++.|++|| |+|+|-=|-.- +.-.+++..+++-.+.+=.+.
T Consensus 209 ~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ks 264 (367)
T 1iuq_A 209 TRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHS 264 (367)
T ss_dssp HHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHc
Confidence 456788999999966 56688765544 445678888887666665553
No 21
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=20.92 E-value=57 Score=24.07 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHhcCCEEEEecCc
Q 031347 91 SWKLEPVVELLKEGAVGVIPTDT 113 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVaiPTDT 113 (161)
...++.+.++|+.||++++-||.
T Consensus 136 ~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 136 KTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESC
T ss_pred HHHHHHHHHHcCCCcEEEEEeCC
Confidence 35788899999999999997764
No 22
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=20.69 E-value=73 Score=22.31 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=23.8
Q ss_pred EEEEeCCCCCChhhHHHHHHHHhcCCEEEEecCc
Q 031347 80 MYVEADPSGADSWKLEPVVELLKEGAVGVIPTDT 113 (161)
Q Consensus 80 ~~~~v~p~~p~~~~l~~aae~L~~GgVVaiPTDT 113 (161)
++.-+.|.+ .+...++++.|++|..|++=-+.
T Consensus 6 ~Ivv~~P~s--y~Da~~I~d~Lr~~~~VvvNL~~ 37 (87)
T 3p04_A 6 TIVPVELHS--FEDAQVIGGAFRDGDAVVFDMSL 37 (87)
T ss_dssp SCEEEECSS--GGGHHHHHHHHHTTCCEEEECTT
T ss_pred EEEEEecCc--HHHHHHHHHHHHCCCEEEEECCC
Confidence 456667774 34578899999999999975543
No 23
>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7
Probab=20.52 E-value=1.3e+02 Score=21.49 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=19.1
Q ss_pred ChhhHHHHHHHHhcCCEEEEe-cCceEE
Q 031347 90 DSWKLEPVVELLKEGAVGVIP-TDTLYA 116 (161)
Q Consensus 90 ~~~~l~~aae~L~~GgVVaiP-TDTVYG 116 (161)
+.+.++.+.+.|..||-|+.| +|+.||
T Consensus 82 d~~evd~~~~~l~~G~~v~~p~~~~~wG 109 (139)
T 1tsj_A 82 DTIEMERLFNGLKDEGAILMPKTNMPPY 109 (139)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEETTE
T ss_pred CHHHHHHHHHHHhCCCEEeecccccCCC
Confidence 445688888888888877754 566555
No 24
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=20.51 E-value=1.5e+02 Score=20.32 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=19.3
Q ss_pred ChhhHHHHHHHHhcCCEEEE-ecCceEE
Q 031347 90 DSWKLEPVVELLKEGAVGVI-PTDTLYA 116 (161)
Q Consensus 90 ~~~~l~~aae~L~~GgVVai-PTDTVYG 116 (161)
|.+.++++.+.|..||.|+. |+|+-||
T Consensus 88 d~~evd~~~~~l~~Gg~v~~p~~~~~~G 115 (136)
T 1u7i_A 88 SNAQIERLAEALSDGGKALMPLGDYGFS 115 (136)
T ss_dssp CHHHHHHHHHHHHTTSEEEEEEECCSSS
T ss_pred CHHHHHHHHHHHHcCCEEecccccCCCc
Confidence 45568888888878887665 5777655
No 25
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=20.38 E-value=1.4e+02 Score=23.77 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHhcCCEEEEecCceEEEEecCCCHHHHHHHHH
Q 031347 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132 (161)
Q Consensus 91 ~~~l~~aae~L~~GgVVaiPTDTVYGL~cda~n~~AVerLy~ 132 (161)
.+.++++++.|++-| ..+..+.||..+++.++++++
T Consensus 41 ~~~~~~~~~~i~~~g------~~~~~~~~Dvt~~~~v~~~~~ 76 (254)
T 4fn4_A 41 EDRLNQIVQELRGMG------KEVLGVKADVSKKKDVEEFVR 76 (254)
T ss_dssp HHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHH
Confidence 455777787776543 245678899999999998875
No 26
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox regulation, thioredoxin, allostery, hydrolase; 2.20A {Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Probab=20.19 E-value=69 Score=27.70 Aligned_cols=59 Identities=14% Similarity=-0.052 Sum_probs=46.8
Q ss_pred hHHHHHHHHhcCCEEEEecCceE----------------------EEEecCCCHHHHHHHHHHhCCCCCCCcEEEeCCHH
Q 031347 93 KLEPVVELLKEGAVGVIPTDTLY----------------------AIVCDLKSHSAIERLRRIKNVEPSKVRKIASHIFS 150 (161)
Q Consensus 93 ~l~~aae~L~~GgVVaiPTDTVY----------------------GL~cda~n~~AVerLy~iK~R~~~KPL~lLv~sl~ 150 (161)
.+.++.+.|..||+..+|.|.-+ |.+.+- .+||..++=..-++-.++++.|.+
T Consensus 273 mV~DvhriL~~GGif~yP~d~~~p~GKLRllyE~aPma~ivEqAGG~asdG-----~~~iLdi~p~~lHqR~p~~~GS~~ 347 (357)
T 1dcu_A 273 LVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDG-----HQRVLDIQPTEIHQRVPLYIGSTE 347 (357)
T ss_dssp HHHHHHHHHHHCCEEEECCCSSSTTCSSBTTTTHHHHHHHHHHTTCEEESS-----SSBGGGSCCCSTTCBCCEEEECHH
T ss_pred cHHHHHHHHhcCeEEEccccccCCCcchhhHhhhhhHHHHHHHcCCEEecC-----CccccccCCCcccccCCeEEeCHH
Confidence 35677788889999999999732 344443 358999998889999999999999
Q ss_pred HHHHHH
Q 031347 151 IFIIWR 156 (161)
Q Consensus 151 ~l~~~~ 156 (161)
+++++.
T Consensus 348 eV~~~~ 353 (357)
T 1dcu_A 348 EVEKVE 353 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
Done!