RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031347
         (161 letters)



>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli
           [TaxId: 562]}
          Length = 206

 Score = 54.1 bits (129), Expect = 4e-10
 Identities = 18/79 (22%), Positives = 36/79 (45%)

Query: 81  YVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
           +    P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +    
Sbjct: 4   FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGH 63

Query: 141 VRKIASHIFSIFIIWRLMQ 159
              +     S    +  + 
Sbjct: 64  NFTLMCRDLSELSTYSFVD 82


>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 208

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 79  LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEP 138
           ++  +          LE  + +++ G + + PTDT+Y +  +     A+ RL R+K   P
Sbjct: 1   MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSP 60


>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
           [TaxId: 562]}
          Length = 186

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 94  LEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
           +   +++L E  V   PT+ ++ + CD  S +A+ RL  +K 
Sbjct: 8   IAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQ 49


>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 72

 Score = 28.1 bits (63), Expect = 0.11
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 123 SHSAIERLRRIKNVEPSKVRKIASHI 148
           +  A  RL  ++   P  V +I   +
Sbjct: 18  TPEARSRLANLRLTRPDFVEQIELQL 43


>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 105

 Score = 28.5 bits (64), Expect = 0.17
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 123 SHSAIERLRRIKNVEPSKVRKIASHI 148
             SA  RL  +  V+P K + + +++
Sbjct: 41  DQSARARLSNLALVKPEKTKAVENYL 66


>d1smye_ a.143.1.1 (E:) RNA polymerase omega subunit {Thermus
          thermophilus [TaxId: 274]}
          Length = 95

 Score = 24.3 bits (52), Expect = 5.2
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 50 SRYRILAMTVKRSPKRLKYSAP 71
          S+YR+  +  KR+ + L++   
Sbjct: 14 SKYRLTVVVAKRAQQLLRHGFK 35


>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant
           x100 [TaxId: 105351]}
          Length = 472

 Score = 24.3 bits (52), Expect = 9.4
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 21  SHSHFLEAATRRAAPFPGRVSSVSPNPKPSR 51
           S++  L A  RR +  P      S +  P  
Sbjct: 417 SYAALLTANNRRNSVVPPSWGETSASSVPGT 447


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 599,402
Number of extensions: 26532
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 15
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.7 bits)