Query 031348
Match_columns 161
No_of_seqs 62 out of 64
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 12:49:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2693 Putative zinc transpor 99.2 1.5E-11 3.3E-16 111.1 4.7 84 61-160 100-183 (453)
2 KOG2694 Putative zinc transpor 98.5 1.5E-08 3.3E-13 89.5 0.4 55 106-160 65-122 (361)
3 PF02535 Zip: ZIP Zinc transpo 96.7 0.00067 1.5E-08 54.7 1.3 53 107-160 2-54 (317)
4 PRK10019 nickel/cobalt efflux 87.2 0.53 1.2E-05 41.0 2.8 16 8-23 92-107 (279)
5 KOG1484 Putative Zn2+ transpor 81.1 1.6 3.4E-05 39.9 3.2 21 8-33 139-159 (354)
6 PF08592 DUF1772: Domain of un 59.8 8.6 0.00019 27.7 2.4 30 105-134 62-91 (139)
7 PF11667 DUF3267: Protein of u 50.4 14 0.0003 26.8 2.2 51 103-160 46-96 (111)
8 PF02535 Zip: ZIP Zinc transpo 49.4 18 0.00039 29.3 2.9 36 121-156 242-278 (317)
9 PRK03557 zinc transporter ZitB 47.7 28 0.0006 29.7 3.9 11 123-133 61-71 (312)
10 PRK13263 ureE urease accessory 44.0 30 0.00066 29.3 3.6 7 27-33 133-139 (206)
11 TIGR01156 cytb6/f_IV cytochrom 38.4 23 0.0005 29.0 2.0 32 102-134 76-115 (159)
12 PRK04201 zinc transporter ZupT 34.1 38 0.00083 28.3 2.7 18 139-156 209-226 (265)
13 PF03824 NicO: High-affinity n 31.0 47 0.001 27.6 2.7 47 107-153 177-223 (282)
14 PRK13263 ureE urease accessory 30.4 42 0.00091 28.5 2.3 11 41-51 172-182 (206)
15 PF12670 DUF3792: Protein of u 29.5 42 0.00092 25.0 2.0 50 104-155 62-111 (116)
16 PF00032 Cytochrom_B_C: Cytoch 26.1 97 0.0021 22.4 3.3 33 102-134 12-51 (102)
17 MTH00086 CYTB cytochrome b; Pr 25.3 99 0.0021 27.9 3.9 46 102-147 257-309 (355)
18 COG0428 Predicted divalent hea 24.6 69 0.0015 27.3 2.6 16 141-156 209-224 (266)
19 MTH00224 CYTB cytochrome b; Pr 24.4 90 0.002 28.3 3.5 46 102-147 270-325 (379)
20 PF06305 DUF1049: Protein of u 23.1 22 0.00048 23.3 -0.5 15 143-157 21-35 (68)
21 COG0772 FtsW Bacterial cell di 22.3 1.3E+02 0.0028 27.1 4.0 20 139-158 234-253 (381)
22 PF05957 DUF883: Bacterial pro 22.2 30 0.00064 24.6 0.0 19 140-158 71-89 (94)
23 PF06024 DUF912: Nucleopolyhed 22.2 45 0.00097 24.7 1.0 14 114-127 61-74 (101)
24 MTH00016 CYTB cytochrome b; Va 21.6 1.1E+02 0.0024 27.7 3.5 33 102-134 270-309 (378)
25 MTH00145 CYTB cytochrome b; Pr 21.1 1.2E+02 0.0026 27.4 3.6 33 102-134 270-309 (379)
26 MTH00034 CYTB cytochrome b; Va 20.6 1.3E+02 0.0029 27.1 3.7 46 102-147 269-324 (379)
27 PF14348 DUF4400: Domain of un 20.5 88 0.0019 24.9 2.4 41 72-133 132-172 (198)
28 cd00290 cytochrome_b_C Cytochr 20.4 1.4E+02 0.003 23.2 3.4 46 102-147 63-117 (147)
29 TIGR03678 het_cyc_patell bacte 20.3 41 0.0009 21.8 0.4 15 58-72 11-29 (34)
30 PF10947 DUF2628: Protein of u 20.2 1.1E+02 0.0024 21.9 2.7 25 107-132 54-78 (108)
No 1
>KOG2693 consensus Putative zinc transporter [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.5e-11 Score=111.10 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=67.8
Q ss_pred hhhcChhhhhhhcccceeccCCCCCCCCCCCCCCCCCCCCCCCcchhhhHHHhhhhHHHhhhHhhhhhhhccccccCCCC
Q 031348 61 KKMLLPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPS 140 (161)
Q Consensus 61 ~~~~lpeelaee~d~~~~~fg~~~~H~h~h~h~H~h~h~~~~~s~~~LW~~ALGsTlLIS~APf~iLf~IPv~~~~g~~~ 140 (161)
...+-|++|+++ |...+..=. +..+. +....++|+|++.||++||++|++.+++||+.. +++..
T Consensus 100 ~~~~~p~~l~q~-~~~~c~~~~------------~~~~~--~~~~~~~w~~g~~a~~lisl~~~l~l~lvP~~~-~~~~~ 163 (453)
T KOG2693|consen 100 FHQLCPALLQQL-DSGLCTSLM------------LFSKK--KTNTKELWLYGILATLLISLAPLLGLLLVPLRK-NSKKK 163 (453)
T ss_pred hhccCHHHHHhh-hcccccccc------------ccccC--CCcceeeEEechHHHHHHHHHHhhheeeccccc-cchhH
Confidence 446689999988 776666510 11111 122578999999999999999999999999997 77788
Q ss_pred hhHHHHHHhccccccccccC
Q 031348 141 KAVVDSLAVFGVRFFISHLC 160 (161)
Q Consensus 141 q~lLKVLLsFAsGGLLGDA~ 160 (161)
+.+++.+++||+|+|+|||+
T Consensus 164 ~~~l~~l~a~a~gtL~gDa~ 183 (453)
T KOG2693|consen 164 LELLIFLLALAVGTLLGDAL 183 (453)
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999996
No 2
>KOG2694 consensus Putative zinc transporter [Inorganic ion transport and metabolism]
Probab=98.55 E-value=1.5e-08 Score=89.51 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=49.3
Q ss_pred hhhhHHHhhhhHHHhhhHhhhhhhhccccc---cCCCChhHHHHHHhccccccccccC
Q 031348 106 LALWVNALGCSLLVSLASLICLVLLPVIFI---QGKPSKAVVDSLAVFGVRFFISHLC 160 (161)
Q Consensus 106 ~~LW~~ALGsTlLIS~APf~iLf~IPv~~~---~g~~~q~lLKVLLsFAsGGLLGDA~ 160 (161)
.+.|++++..+++|++..+|.||+||.+.. ++++.+..||+||+||.||||||+|
T Consensus 65 ~d~Wi~sLlGs~~vglsGifPl~~iP~e~~~~l~s~ag~~rL~~LLsFAiGgLLgdVF 122 (361)
T KOG2694|consen 65 EDMWIYSLLGSSLVGLSGIFPLFLIPAEIHVLLSSSAGQRRLNLLLSFAIGGLLGDVF 122 (361)
T ss_pred cchhHHHHhhhHHHhhcccceeeeechhhhhhccCchhHHHHHHHHHHHHhhHHHHHH
Confidence 457999999999999999999999999851 2567899999999999999999987
No 3
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.70 E-value=0.00067 Score=54.75 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=46.3
Q ss_pred hhhHHHhhhhHHHhhhHhhhhhhhccccccCCCChhHHHHHHhccccccccccC
Q 031348 107 ALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLC 160 (161)
Q Consensus 107 ~LW~~ALGsTlLIS~APf~iLf~IPv~~~~g~~~q~lLKVLLsFAsGGLLGDA~ 160 (161)
.+|+.++.+++++|+++.++-++++... +.+.++.++..+.+|++|.|||+++
T Consensus 2 ~~ki~~~~~i~~~s~lg~~~P~~~~~~~-~~~~~~~~l~~~~~fa~GvlL~~a~ 54 (317)
T PF02535_consen 2 GLKIVAILAIFIVSLLGGLLPLLIRKFS-KNRLNKRILSLLNAFAAGVLLGTAF 54 (317)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHHhh-ccccchHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999888888764 2256899999999999999999876
No 4
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=87.18 E-value=0.53 Score=40.97 Aligned_cols=16 Identities=19% Similarity=0.042 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhccc
Q 031348 8 LILLVLALVLVSNLDL 23 (161)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (161)
.++-++++.++..+.+
T Consensus 92 ~~S~~lii~lGl~ll~ 107 (279)
T PRK10019 92 LISAVIIISTAFWMFW 107 (279)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666666654
No 5
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=81.10 E-value=1.6 Score=39.92 Aligned_cols=21 Identities=38% Similarity=0.396 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCC
Q 031348 8 LILLVLALVLVSNLDLGSGGGFCATP 33 (161)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~c~~~ 33 (161)
+.+||-+++++.||+ |-|+|.
T Consensus 139 rllvVS~~gllvnLv-----Gi~aF~ 159 (354)
T KOG1484|consen 139 RLLVVSVLGLLVNLV-----GILAFS 159 (354)
T ss_pred eeEEeeHHHHHHHHH-----HHHHhc
Confidence 345777888888886 567776
No 6
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=59.77 E-value=8.6 Score=27.71 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=25.6
Q ss_pred chhhhHHHhhhhHHHhhhHhhhhhhhcccc
Q 031348 105 GLALWVNALGCSLLVSLASLICLVLLPVIF 134 (161)
Q Consensus 105 ~~~LW~~ALGsTlLIS~APf~iLf~IPv~~ 134 (161)
+...|+++.++.+++++.|+-.++.+|++.
T Consensus 62 ~~~~~~~~~a~~~~~~~~~~T~~~~~P~N~ 91 (139)
T PF08592_consen 62 PAARLLWLAAAALLLSIIPFTFLVNVPINN 91 (139)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 445677788899999999999999999874
No 7
>PF11667 DUF3267: Protein of unknown function (DUF3267); InterPro: IPR021683 This family of proteins has no known function.
Probab=50.37 E-value=14 Score=26.75 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=33.8
Q ss_pred CcchhhhHHHhhhhHHHhhhHhhhhhhhccccccCCCChhHHHHHHhccccccccccC
Q 031348 103 LSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLC 160 (161)
Q Consensus 103 ~s~~~LW~~ALGsTlLIS~APf~iLf~IPv~~~~g~~~q~lLKVLLsFAsGGLLGDA~ 160 (161)
.++.+..+.++.=.+++|++|+++.++.|.. ...+-.+.++=.+|-.||..
T Consensus 46 ~sk~~~~i~~l~P~ivl~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~~gD~~ 96 (111)
T PF11667_consen 46 ISKWRFIIILLAPFIVLTILPLILGFFFPFG-------SHYLIFLGAINAGGSVGDFY 96 (111)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3444444545555567777777777777643 56777788888888888853
No 8
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=49.45 E-value=18 Score=29.31 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=22.3
Q ss_pred hhHhhhhhhhcc-ccccCCCChhHHHHHHhccccccc
Q 031348 121 LASLICLVLLPV-IFIQGKPSKAVVDSLAVFGVRFFI 156 (161)
Q Consensus 121 ~APf~iLf~IPv-~~~~g~~~q~lLKVLLsFAsGGLL 156 (161)
+.|+-+++-+-+ ...++.......-++++|++|.+|
T Consensus 242 ~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~l 278 (317)
T PF02535_consen 242 STPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFL 278 (317)
T ss_pred HHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHH
Confidence 444444443333 112345567888999999999875
No 9
>PRK03557 zinc transporter ZitB; Provisional
Probab=47.72 E-value=28 Score=29.68 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=5.6
Q ss_pred Hhhhhhhhccc
Q 031348 123 SLICLVLLPVI 133 (161)
Q Consensus 123 Pf~iLf~IPv~ 133 (161)
.++.|+-+.+.
T Consensus 61 ~~~~l~a~~~s 71 (312)
T PRK03557 61 LLFALLAVQFS 71 (312)
T ss_pred HHHHHHHHHHh
Confidence 34445555554
No 10
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=43.98 E-value=30 Score=29.30 Aligned_cols=7 Identities=0% Similarity=-0.244 Sum_probs=3.5
Q ss_pred CCCCCCC
Q 031348 27 GGFCATP 33 (161)
Q Consensus 27 ~~~c~~~ 33 (161)
...+||.
T Consensus 133 ~~~apF~ 139 (206)
T PRK13263 133 RASAPFE 139 (206)
T ss_pred EeEeccC
Confidence 3455554
No 11
>TIGR01156 cytb6/f_IV cytochrome b6/f complex subunit IV. This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene.
Probab=38.36 E-value=23 Score=28.98 Aligned_cols=32 Identities=22% Similarity=0.019 Sum_probs=21.2
Q ss_pred CCcchhhhHHHh--------hhhHHHhhhHhhhhhhhcccc
Q 031348 102 QLSGLALWVNAL--------GCSLLVSLASLICLVLLPVIF 134 (161)
Q Consensus 102 ~~s~~~LW~~AL--------GsTlLIS~APf~iLf~IPv~~ 134 (161)
++.+.-+|.|++ +..+++. +.+++|+++|...
T Consensus 76 ~PEWYFl~~yaiLr~iP~kl~Gvl~m~-~~i~~L~llPfld 115 (159)
T TIGR01156 76 LPEWYFYPVFQILRTVPNKLLGVLLMA-AVPAGLLTVPFIE 115 (159)
T ss_pred ccchhhhHHHHHHhhccchHHHHHHHH-HHHHHHHHHHHHh
Confidence 456778888887 3334443 4446688999875
No 12
>PRK04201 zinc transporter ZupT; Provisional
Probab=34.05 E-value=38 Score=28.27 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=14.2
Q ss_pred CChhHHHHHHhccccccc
Q 031348 139 PSKAVVDSLAVFGVRFFI 156 (161)
Q Consensus 139 ~~q~lLKVLLsFAsGGLL 156 (161)
..+.++-++++|++|.++
T Consensus 209 ~~~~~~~~~l~~aaG~~l 226 (265)
T PRK04201 209 ISPVVMGAIFAAVAGIMV 226 (265)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 346677889999999875
No 13
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=31.00 E-value=47 Score=27.56 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=23.7
Q ss_pred hhhHHHhhhhHHHhhhHhhhhhhhccccccCCCChhHHHHHHhcccc
Q 031348 107 ALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVR 153 (161)
Q Consensus 107 ~LW~~ALGsTlLIS~APf~iLf~IPv~~~~g~~~q~lLKVLLsFAsG 153 (161)
..|...++..+.+++.|+=-...+++..........-++.-++++.|
T Consensus 177 ~~~~~~~~~~f~~Gm~p~~~a~~vl~~~~~~~~~~~g~~~~~~~~l~ 223 (282)
T PF03824_consen 177 ISWILLLGLGFAAGMVPCPGALGVLLFALYLGAFWAGRAAVLAMSLG 223 (282)
T ss_pred chHHHHHHHHHHhhccccHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34555666677777888655555544321112222234455555553
No 14
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=30.45 E-value=42 Score=28.47 Aligned_cols=11 Identities=36% Similarity=0.749 Sum_probs=4.6
Q ss_pred CCCCCCCCCCC
Q 031348 41 HDHQCDHGHHH 51 (161)
Q Consensus 41 h~h~c~~g~~~ 51 (161)
|+|+.++.+++
T Consensus 172 ~~h~~~h~~~~ 182 (206)
T PRK13263 172 HGHSHSHSDHD 182 (206)
T ss_pred cCCCCcccccc
Confidence 33444444443
No 15
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=29.46 E-value=42 Score=24.99 Aligned_cols=50 Identities=20% Similarity=0.148 Sum_probs=28.4
Q ss_pred cchhhhHHHhhhhHHHhhhHhhhhhhhccccccCCCChhHHHHHHhcccccc
Q 031348 104 SGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFF 155 (161)
Q Consensus 104 s~~~LW~~ALGsTlLIS~APf~iLf~IPv~~~~g~~~q~lLKVLLsFAsGGL 155 (161)
.+.+-|++.+...++-.+..+++-++.--+ .....+.++|.++++++|.+
T Consensus 62 ~~~kG~l~G~~~Gl~y~~il~lis~~~~~~--~~~~~~~~~~~~~~~~~G~l 111 (116)
T PF12670_consen 62 AGSKGWLHGLLVGLLYFLILLLISFLFGPG--PFSGSSQLLKLLLCLLAGAL 111 (116)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHccC--cchHHHHHHHHHHHHHHHHH
Confidence 345667776655555444444443333221 12336788999988877654
No 16
>PF00032 Cytochrom_B_C: Cytochrome b(C-terminal)/b6/petD; InterPro: IPR005798 In the mitochondrion of eukaryotes and in aerobic prokaryotes, cytochrome b is a component of respiratory chain complex III (1.10.2.2 from EC) - also known as the bc1 complex or ubiquinol-cytochrome c reductase. In plant chloroplasts and cyanobacteria, there is a analogous protein, cytochrome b6, a component of the plastoquinone-plastocyanin reductase (1.10.99.1 from EC), also known as the b6f complex. Cytochrome b/b6 [, ] is an integral membrane protein of approximately 400 amino acid residues that probably has 8 transmembrane segments. In plants and cyanobacteria, cytochrome b6 consists of two subunits encoded by the petB and petD genes. The sequence of petB is colinear with the N-terminal part of mitochondrial cytochrome b, while petD corresponds to the C-terminal part. Cytochrome b/b6 non-covalently binds two haem groups, known as b562 and b566. Four conserved histidine residues are postulated to be the ligands of the iron atoms of these two haem groups. Apart from regions around some of the histidine haem ligands, there are a few conserved regions in the sequence of b/b6. The best conserved of these regions includes an invariant P-E-W triplet which lies in the loop that separates the fifth and sixth transmembrane segments. It seems to be important for electron transfer at the ubiquinone redox site - called Qz or Qo (where o stands for outside) - located on the outer side of the membrane. This entry is the C terminus of these proteins.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016020 membrane; PDB: 2E76_B 2D2C_B 1VF5_B 2E74_B 2E75_B 2ZT9_B 2YIU_D 1Q90_D 1ZRT_C 1PPJ_P ....
Probab=26.13 E-value=97 Score=22.37 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=20.3
Q ss_pred CCcchhhhHHHhh-------hhHHHhhhHhhhhhhhcccc
Q 031348 102 QLSGLALWVNALG-------CSLLVSLASLICLVLLPVIF 134 (161)
Q Consensus 102 ~~s~~~LW~~ALG-------sTlLIS~APf~iLf~IPv~~ 134 (161)
++...=+|.|++- ..+++=.+.+++|+++|...
T Consensus 12 ~PEWYFl~~y~iLr~ip~k~~Gv~~~~~~~~~l~~lP~ld 51 (102)
T PF00032_consen 12 KPEWYFLPFYAILRSIPNKLGGVIAMGLSILILFLLPFLD 51 (102)
T ss_dssp --TGGGHHHHHHHHHSSSHHHHHHHHHHHHHHHHTHHHHT
T ss_pred CCccccccccceeeecccccceeeecchhhhhHHHHHhhc
Confidence 4566778888872 22233345577889999864
No 17
>MTH00086 CYTB cytochrome b; Provisional
Probab=25.29 E-value=99 Score=27.85 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=30.7
Q ss_pred CCcchhhhHHHhhhh-------HHHhhhHhhhhhhhccccccCCCChhHHHHH
Q 031348 102 QLSGLALWVNALGCS-------LLVSLASLICLVLLPVIFIQGKPSKAVVDSL 147 (161)
Q Consensus 102 ~~s~~~LW~~ALGsT-------lLIS~APf~iLf~IPv~~~~g~~~q~lLKVL 147 (161)
++...-+|.||+--+ ++.-++++++|+++|....++...+|+-|++
T Consensus 257 ~PEWYfL~~YaiLRsiP~KlgGvl~~~~silvL~~lP~l~~~~~~~~p~~~~~ 309 (355)
T MTH00086 257 VPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLNKFL 309 (355)
T ss_pred CcchHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 577788999998433 3344668889999997643333446666654
No 18
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=24.59 E-value=69 Score=27.28 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=14.6
Q ss_pred hhHHHHHHhccccccc
Q 031348 141 KAVVDSLAVFGVRFFI 156 (161)
Q Consensus 141 q~lLKVLLsFAsGGLL 156 (161)
.+++..+++|++|+|+
T Consensus 209 ~~~l~~~la~aaG~mv 224 (266)
T COG0428 209 PLVLPFALAFAAGAMV 224 (266)
T ss_pred HHHHHHHHHHHhhcch
Confidence 5899999999999986
No 19
>MTH00224 CYTB cytochrome b; Provisional
Probab=24.40 E-value=90 Score=28.30 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCcchhhhHHHhhh-------hHHHhhhHhhhhhhhcccccc---CCCChhHHHHH
Q 031348 102 QLSGLALWVNALGC-------SLLVSLASLICLVLLPVIFIQ---GKPSKAVVDSL 147 (161)
Q Consensus 102 ~~s~~~LW~~ALGs-------TlLIS~APf~iLf~IPv~~~~---g~~~q~lLKVL 147 (161)
++...-+|.||+-. .++.-++++++|+++|....+ +...+|+-|++
T Consensus 270 ~PEWYFL~~YaiLr~iP~Kl~Gvl~l~~siliL~~lP~~~~~~~~~~~~rp~~~~~ 325 (379)
T MTH00224 270 KPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLL 325 (379)
T ss_pred CCceeeHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHhccccccccccCchhHHH
Confidence 57778899999832 333445788899999976421 22345666644
No 20
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.08 E-value=22 Score=23.32 Aligned_cols=15 Identities=13% Similarity=0.053 Sum_probs=10.5
Q ss_pred HHHHHHhcccccccc
Q 031348 143 VVDSLAVFGVRFFIS 157 (161)
Q Consensus 143 lLKVLLsFAsGGLLG 157 (161)
.+=++++|+.|.++|
T Consensus 21 ~l~il~~f~~G~llg 35 (68)
T PF06305_consen 21 GLLILIAFLLGALLG 35 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345677788887776
No 21
>COG0772 FtsW Bacterial cell division membrane protein [Cell division and chromosome partitioning]
Probab=22.31 E-value=1.3e+02 Score=27.12 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=17.6
Q ss_pred CChhHHHHHHhccccccccc
Q 031348 139 PSKAVVDSLAVFGVRFFISH 158 (161)
Q Consensus 139 ~~q~lLKVLLsFAsGGLLGD 158 (161)
..-++.+.+.++++||+.|.
T Consensus 234 ~gyQl~qS~~Aig~Gg~~G~ 253 (381)
T COG0772 234 SGYQLIQSLIAIGSGGLFGK 253 (381)
T ss_pred CchHHHHHHHHHHcCCceee
Confidence 46789999999999999984
No 22
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=22.21 E-value=30 Score=24.56 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.6
Q ss_pred ChhHHHHHHhccccccccc
Q 031348 140 SKAVVDSLAVFGVRFFISH 158 (161)
Q Consensus 140 ~q~lLKVLLsFAsGGLLGD 158 (161)
.+|+.-|.+++++|.|||=
T Consensus 71 e~P~~svgiAagvG~llG~ 89 (94)
T PF05957_consen 71 ENPWQSVGIAAGVGFLLGL 89 (94)
T ss_pred HChHHHHHHHHHHHHHHHH
Confidence 5788888999999988873
No 23
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=22.18 E-value=45 Score=24.65 Aligned_cols=14 Identities=43% Similarity=0.940 Sum_probs=6.1
Q ss_pred hhhHHHhhhHhhhh
Q 031348 114 GCSLLVSLASLICL 127 (161)
Q Consensus 114 GsTlLIS~APf~iL 127 (161)
+..++|++++|+|+
T Consensus 61 ~~iili~lls~v~I 74 (101)
T PF06024_consen 61 GNIILISLLSFVCI 74 (101)
T ss_pred ccchHHHHHHHHHH
Confidence 33444444444443
No 24
>MTH00016 CYTB cytochrome b; Validated
Probab=21.58 E-value=1.1e+02 Score=27.65 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=24.2
Q ss_pred CCcchhhhHHHhhh-------hHHHhhhHhhhhhhhcccc
Q 031348 102 QLSGLALWVNALGC-------SLLVSLASLICLVLLPVIF 134 (161)
Q Consensus 102 ~~s~~~LW~~ALGs-------TlLIS~APf~iLf~IPv~~ 134 (161)
++...-+|.||+-- .++..++.+++|+++|...
T Consensus 270 ~PEWYFL~~YaiLRsiPnKlgGvial~~siliL~lLP~l~ 309 (378)
T MTH00016 270 KPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIF 309 (378)
T ss_pred CCchhhhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 57788899999833 3344467788889999864
No 25
>MTH00145 CYTB cytochrome b; Provisional
Probab=21.10 E-value=1.2e+02 Score=27.38 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCcchhhhHHHhh-------hhHHHhhhHhhhhhhhcccc
Q 031348 102 QLSGLALWVNALG-------CSLLVSLASLICLVLLPVIF 134 (161)
Q Consensus 102 ~~s~~~LW~~ALG-------sTlLIS~APf~iLf~IPv~~ 134 (161)
++...-+|.||+- ..++..++.+++|+++|...
T Consensus 270 ~PEWYFL~~YaiLRsiP~KlgGvlal~lsi~iLflLP~i~ 309 (379)
T MTH00145 270 QPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLH 309 (379)
T ss_pred CccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 5777889999983 33444467888899999774
No 26
>MTH00034 CYTB cytochrome b; Validated
Probab=20.60 E-value=1.3e+02 Score=27.10 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=28.9
Q ss_pred CCcchhhhHHHhhhh-------HHHhhhHhhhhhhhccccccCC---CChhHHHHH
Q 031348 102 QLSGLALWVNALGCS-------LLVSLASLICLVLLPVIFIQGK---PSKAVVDSL 147 (161)
Q Consensus 102 ~~s~~~LW~~ALGsT-------lLIS~APf~iLf~IPv~~~~g~---~~q~lLKVL 147 (161)
++...-+|.||+-.+ ++..++.+++|+++|....+.. ..+|+-|.+
T Consensus 269 ~PEWYFL~~YaiLrsipnKlgGvia~~~~iliLflLP~i~~~~~~~~~~rp~~~~~ 324 (379)
T MTH00034 269 QPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324 (379)
T ss_pred CCcchhHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhccccccccChHHHHH
Confidence 577788999999532 3344566778888997752211 235665544
No 27
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=20.50 E-value=88 Score=24.93 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=27.8
Q ss_pred hcccceeccCCCCCCCCCCCCCCCCCCCCCCCcchhhhHHHhhhhHHHhhhHhhhhhhhccc
Q 031348 72 EEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPVI 133 (161)
Q Consensus 72 e~d~~~~~fg~~~~H~h~h~h~H~h~h~~~~~s~~~LW~~ALGsTlLIS~APf~iLf~IPv~ 133 (161)
+-|+|.+|||+. ...+.-.|.-.+..+-..|.++-+++|+.
T Consensus 132 ~R~iRr~~~g~e---------------------Sp~~~h~a~~~~~~~~~~~~~lyL~lP~~ 172 (198)
T PF14348_consen 132 RRDIRRFGFGRE---------------------SPFVYHHAKRSVIPLLILPWVLYLSLPFS 172 (198)
T ss_pred HHHHHHHcCCCC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 458899999943 22344445566666667777788888885
No 28
>cd00290 cytochrome_b_C Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Probab=20.40 E-value=1.4e+02 Score=23.21 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=27.0
Q ss_pred CCcchhhhHHHhhhh-------HHHhhhHhhhhhhhccccccCC--CChhHHHHH
Q 031348 102 QLSGLALWVNALGCS-------LLVSLASLICLVLLPVIFIQGK--PSKAVVDSL 147 (161)
Q Consensus 102 ~~s~~~LW~~ALGsT-------lLIS~APf~iLf~IPv~~~~g~--~~q~lLKVL 147 (161)
++...-+|.||+-.+ +++=++.+++|+++|....+.. ..++.-+++
T Consensus 63 ~PeWYfl~~y~iLr~ip~k~~Gv~~~~~~i~~l~~lP~~~~~~~~~~~~~~~~~~ 117 (147)
T cd00290 63 LPEWYFLPVYAILRAIPNKLLGVLAMAASILSLFLVPFLENSNKRSQFRPLRPTA 117 (147)
T ss_pred hhhhHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhcCCcCCCCCcHHHHH
Confidence 355677888888322 2333666778889997752211 245555544
No 29
>TIGR03678 het_cyc_patell bacteriocin leader peptide, microcyclamide/patellamide family. This model represents a conserved N-terminal region shared by microcyclamide and patellamide bacteriocins precursors. These bacteriocin precursors are associated with heterocyclization.
Probab=20.28 E-value=41 Score=21.75 Aligned_cols=15 Identities=33% Similarity=0.162 Sum_probs=10.5
Q ss_pred chhhhhc----Chhhhhhh
Q 031348 58 HKEKKML----LPEELAEE 72 (161)
Q Consensus 58 ~h~~~~~----lpeelaee 72 (161)
.+-++|. ||.||||-
T Consensus 11 ~~Pi~R~taGqLp~~lAEL 29 (34)
T TIGR03678 11 GAPVIRGTAGKLPSHLAEL 29 (34)
T ss_pred CCCeeecccccCcHHHHHh
Confidence 4445555 99999984
No 30
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=20.25 E-value=1.1e+02 Score=21.92 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=17.8
Q ss_pred hhhHHHhhhhHHHhhhHhhhhhhhcc
Q 031348 107 ALWVNALGCSLLVSLASLICLVLLPV 132 (161)
Q Consensus 107 ~LW~~ALGsTlLIS~APf~iLf~IPv 132 (161)
++|..+ ...++++++-.+++.+++.
T Consensus 54 ~mw~~~-~~~~~~~~~~~~~~~~~~~ 78 (108)
T PF10947_consen 54 KMWLYA-IIFLALLVALAIILILLGF 78 (108)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 788877 6667777777777766654
Done!