Query 031348
Match_columns 161
No_of_seqs 62 out of 64
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 20:35:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dve_A Biotin transporter BIOY 88.0 0.048 1.6E-06 43.8 -1.8 42 90-132 3-46 (198)
2 4g1u_A Hemin transport system 76.8 0.9 3.1E-05 39.0 1.6 16 142-157 78-93 (357)
3 3cio_A ETK, tyrosine-protein k 72.4 1.1 3.9E-05 35.9 1.0 17 65-82 28-44 (299)
4 3llq_A Aquaporin Z 2; aquapori 70.8 0.79 2.7E-05 37.8 -0.2 10 51-60 11-20 (256)
5 2l4h_A Calcium and integrin-bi 65.6 1.6 5.4E-05 32.5 0.5 9 63-71 30-38 (214)
6 2bu3_A ALR0975 protein; phytoc 59.5 2 6.8E-05 35.9 0.1 9 61-69 36-44 (254)
7 2onk_C Molybdate/tungstate ABC 51.6 6.9 0.00024 30.4 2.0 17 85-101 2-18 (284)
8 2l08_A Regulator of nonsense t 49.0 3.9 0.00013 29.8 0.2 17 61-77 13-29 (97)
9 2xci_A KDO-transferase, 3-deox 47.3 2.9 0.0001 33.8 -0.8 19 106-124 41-59 (374)
10 3llq_A Aquaporin Z 2; aquapori 43.5 15 0.00053 30.1 2.9 13 141-153 62-74 (256)
11 3k9f_C DNA topoisomerase 4 sub 41.1 5.2 0.00018 34.1 -0.2 8 64-71 32-39 (268)
12 3d31_C Sulfate/molybdate ABC t 40.5 9.1 0.00031 29.9 1.1 13 118-130 50-62 (295)
13 2pw9_A Putative formate dehydr 36.5 9.6 0.00033 31.6 0.7 17 65-81 228-244 (268)
14 1ow5_A Serine/threonine-protei 35.9 9.7 0.00033 27.5 0.5 24 92-115 3-27 (85)
15 1vf5_B Subunit IV; photosynthe 34.2 44 0.0015 25.8 4.1 45 102-147 76-132 (160)
16 4axs_A Carbamate kinase; oxido 33.2 4 0.00014 34.6 -2.2 10 109-118 27-36 (332)
17 3pnr_B Pbicp-C; immunoglobulin 32.1 9.6 0.00033 31.0 0.0 7 62-68 19-25 (187)
18 1jr2_A Uroporphyrinogen-III sy 31.7 8.5 0.00029 30.1 -0.4 6 107-112 38-43 (286)
19 3qyh_A CO-type nitrIle hydrata 31.7 33 0.0011 28.7 3.1 36 79-116 10-46 (226)
20 3odm_A Pepcase, PEPC, phosphoe 31.2 11 0.00037 35.1 0.2 14 137-150 148-161 (560)
21 2lbb_A Acyl COA binding protei 30.7 7.8 0.00027 27.9 -0.7 19 62-80 21-40 (96)
22 2c07_A 3-oxoacyl-(acyl-carrier 30.5 11 0.00036 28.9 0.0 7 114-120 51-57 (285)
23 2apo_A Probable tRNA pseudouri 30.1 11 0.00037 32.6 0.0 8 62-69 21-28 (357)
24 2zyd_A 6-phosphogluconate dehy 28.9 11 0.00038 32.6 -0.2 8 74-81 38-45 (480)
25 3b9f_I Protein C inhibitor; mi 28.7 6.5 0.00022 33.1 -1.6 12 136-147 73-84 (395)
26 1uj8_A ORF3, hypothetical prot 27.9 23 0.00078 25.4 1.3 15 58-72 11-25 (77)
27 3c3r_A Programmed cell death 6 26.6 14 0.00047 31.2 0.0 11 65-75 28-38 (380)
28 1nxi_A Conserved hypothetical 26.5 23 0.0008 26.2 1.3 18 67-84 105-122 (132)
29 2oar_A Large-conductance mecha 24.6 16 0.00053 29.4 -0.0 9 142-150 94-102 (174)
30 2l72_A Tgadf, actin depolymeri 24.3 16 0.00055 27.0 0.0 12 122-133 88-99 (139)
31 2o8n_A APOA-I binding protein; 24.0 26 0.0009 28.7 1.2 19 62-80 231-249 (265)
32 3bn9_D E2 FAB heavy chain; ant 23.5 17 0.00058 27.7 0.0 11 58-68 241-251 (257)
33 2x7q_A Ca3427, possible thiami 23.5 17 0.00058 28.1 0.0 6 87-92 5-10 (321)
34 2h80_A STAR-related lipid tran 23.4 27 0.00093 25.2 1.1 21 61-81 12-34 (81)
35 2axq_A Saccharopine dehydrogen 23.3 17 0.00059 31.5 0.0 12 114-125 88-99 (467)
36 2c0d_A Thioredoxin peroxidase 23.1 17 0.0006 27.6 0.0 9 125-133 59-67 (221)
37 4faj_A PRGZ; substrate binding 22.9 18 0.00061 32.7 0.0 17 111-127 23-39 (564)
38 3ako_A Venus; fluorescent prot 22.9 21 0.00071 28.8 0.4 14 65-78 25-38 (173)
39 1sjq_A Polypyrimidine tract-bi 21.6 18 0.00062 25.6 -0.2 11 65-76 24-34 (105)
40 4e4j_A Arginine deiminase; L-a 21.4 20 0.00068 30.6 0.0 7 75-81 27-33 (433)
41 3oti_A CALG3; calicheamicin, T 21.1 18 0.00062 28.4 -0.3 10 86-95 2-11 (398)
42 2f6s_A Cell filamentation prot 20.9 17 0.0006 28.1 -0.4 22 127-148 115-136 (201)
43 3rlb_A THIT; S-component, ECF 20.7 40 0.0014 26.6 1.6 9 94-102 7-15 (192)
44 1uoz_A Putative cellulase; hyd 20.6 21 0.00072 30.7 0.0 12 122-133 91-102 (315)
45 2ki8_A Tungsten formylmethanof 20.1 27 0.00093 25.6 0.5 24 58-81 9-32 (146)
No 1
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=87.98 E-value=0.048 Score=43.83 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHhhhhHHHhhhHh--hhhhhhcc
Q 031348 90 HGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASL--ICLVLLPV 132 (161)
Q Consensus 90 h~h~H~h~h~~~~~s~~~LW~~ALGsTlLIS~APf--~iLf~IPv 132 (161)
|+|+|||+..+.+.++ ++=.-|+++.+++-.+.+ +.+.+.|+
T Consensus 3 ~~~~~~~am~~~~k~r-~l~~~alfaAliavla~i~~Ipip~~pV 46 (198)
T 4dve_A 3 HHHHHHHAMTNNQKVK-TLTYSAFMTAFIIILGFLPGIPIGFIPV 46 (198)
T ss_dssp -------CCCHHHHHH-HHHHHHHHHHHHHHHTTSCCBCCSSSSC
T ss_pred cchhhHHHhhccHHHH-HHHHHHHHHHHHHHHHHhccCCCCCCCc
Confidence 3344556666554333 344457777665544432 33444444
No 2
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=76.84 E-value=0.9 Score=39.04 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=11.6
Q ss_pred hHHHHHHhcccccccc
Q 031348 142 AVVDSLAVFGVRFFIS 157 (161)
Q Consensus 142 ~lLKVLLsFAsGGLLG 157 (161)
-+=|+++++.+|+-||
T Consensus 78 RlPR~l~a~lvGaaLa 93 (357)
T 4g1u_A 78 RLPRVLLAVVVGCALA 93 (357)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3448888888887665
No 3
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=72.40 E-value=1.1 Score=35.88 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=12.8
Q ss_pred ChhhhhhhcccceeccCC
Q 031348 65 LPEELAEEEDMKLYGFGP 82 (161)
Q Consensus 65 lpeelaee~d~~~~~fg~ 82 (161)
=|||+.+. ++.++|-=+
T Consensus 28 ~~~~ie~~-g~pvlg~iP 44 (299)
T 3cio_A 28 APEQLEEH-GISVYATIP 44 (299)
T ss_dssp CTHHHHTT-TCCEEEEEE
T ss_pred CHHHHHhC-CCCEEEEec
Confidence 48888877 888888543
No 4
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=70.79 E-value=0.79 Score=37.77 Aligned_cols=10 Identities=60% Similarity=1.205 Sum_probs=0.0
Q ss_pred CCCCCccchh
Q 031348 51 HHDHDHQHKE 60 (161)
Q Consensus 51 ~h~hh~~~h~ 60 (161)
|||||||||+
T Consensus 11 ~~~~~~~~~~ 20 (256)
T 3llq_A 11 HHHHHHHHHE 20 (256)
T ss_dssp ----------
T ss_pred ccccccccch
Confidence 3333444555
No 5
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=65.56 E-value=1.6 Score=32.49 Aligned_cols=9 Identities=56% Similarity=0.386 Sum_probs=4.7
Q ss_pred hcChhhhhh
Q 031348 63 MLLPEELAE 71 (161)
Q Consensus 63 ~~lpeelae 71 (161)
++-|||++|
T Consensus 30 ~l~~e~l~~ 38 (214)
T 2l4h_A 30 RLSKELLAE 38 (214)
T ss_dssp -CCHHHHHH
T ss_pred CCCHHHHHH
Confidence 345666654
No 6
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=59.52 E-value=2 Score=35.92 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=3.4
Q ss_pred hhhcChhhh
Q 031348 61 KKMLLPEEL 69 (161)
Q Consensus 61 ~~~~lpeel 69 (161)
.+|-||+.+
T Consensus 36 ~~~~lp~~~ 44 (254)
T 2bu3_A 36 QTLTLSPNL 44 (254)
T ss_dssp ----CCTTC
T ss_pred cccCCChhh
Confidence 346688753
No 7
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=51.58 E-value=6.9 Score=30.43 Aligned_cols=17 Identities=41% Similarity=0.823 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 031348 85 GHDHDHGHSHHHHDRDS 101 (161)
Q Consensus 85 ~H~h~h~h~H~h~h~~~ 101 (161)
||++|+++++|-+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (284)
T 2onk_C 2 GHHHHHHHHHHSSGENL 18 (284)
T ss_dssp -----------------
T ss_pred CCccccccccccchhhH
Confidence 35556666666554443
No 8
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=48.98 E-value=3.9 Score=29.78 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=12.7
Q ss_pred hhhcChhhhhhhcccce
Q 031348 61 KKMLLPEELAEEEDMKL 77 (161)
Q Consensus 61 ~~~~lpeelaee~d~~~ 77 (161)
.-|.||.-|-||+=++.
T Consensus 13 VIRrLPP~Ltee~F~~~ 29 (97)
T 2l08_A 13 VIRRLPPGLTKEQLEEQ 29 (97)
T ss_dssp EEECCCSCSCHHHHTTT
T ss_pred EEeCCCCCCCHHHHHHH
Confidence 55889999998875543
No 9
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=47.31 E-value=2.9 Score=33.78 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=9.3
Q ss_pred hhhhHHHhhhhHHHhhhHh
Q 031348 106 LALWVNALGCSLLVSLASL 124 (161)
Q Consensus 106 ~~LW~~ALGsTlLIS~APf 124 (161)
..+|+.+...-...++.|+
T Consensus 41 ~~iwih~~s~G~~~~~~~L 59 (374)
T 2xci_A 41 GALWVHTASIGEFNTFLPI 59 (374)
T ss_dssp TCEEEECSSHHHHHHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHH
Confidence 3589776533223344444
No 10
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=43.49 E-value=15 Score=30.07 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=6.6
Q ss_pred hhHHHHHHhcccc
Q 031348 141 KAVVDSLAVFGVR 153 (161)
Q Consensus 141 q~lLKVLLsFAsG 153 (161)
...+-+=++|+.+
T Consensus 62 ~~~l~iala~Gla 74 (256)
T 3llq_A 62 IGFTGVALAFGLT 74 (256)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 3455555555443
No 11
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=41.12 E-value=5.2 Score=34.08 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=2.7
Q ss_pred cChhhhhh
Q 031348 64 LLPEELAE 71 (161)
Q Consensus 64 ~lpeelae 71 (161)
.||..||.
T Consensus 32 ~lpgKLaD 39 (268)
T 3k9f_C 32 LLSGKLTP 39 (268)
T ss_dssp ----CCBC
T ss_pred CCCccccC
Confidence 38887774
No 12
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=40.46 E-value=9.1 Score=29.91 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=7.3
Q ss_pred HHhhhHhhhhhhh
Q 031348 118 LVSLASLICLVLL 130 (161)
Q Consensus 118 LIS~APf~iLf~I 130 (161)
++.+.|++.++..
T Consensus 50 ~~~~~P~~~~~~~ 62 (295)
T 3d31_C 50 LFIFLTLSNMIFE 62 (295)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445666666554
No 13
>2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5
Probab=36.45 E-value=9.6 Score=31.56 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.5
Q ss_pred ChhhhhhhcccceeccC
Q 031348 65 LPEELAEEEDMKLYGFG 81 (161)
Q Consensus 65 lpeelaee~d~~~~~fg 81 (161)
|-=|+||+.+|.|.||-
T Consensus 228 lAV~lA~~~giTLiGf~ 244 (268)
T 2pw9_A 228 LGLALAKRSGATLVAYS 244 (268)
T ss_dssp HHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHcCCEEEEEe
Confidence 44589999999999994
No 14
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=35.88 E-value=9.7 Score=27.54 Aligned_cols=24 Identities=33% Similarity=0.718 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCc-chhhhHHHhhh
Q 031348 92 HSHHHHDRDSQLS-GLALWVNALGC 115 (161)
Q Consensus 92 h~H~h~h~~~~~s-~~~LW~~ALGs 115 (161)
|+|+|++++++.+ ...-|+.+++|
T Consensus 3 ~~~~~~~~~~~~~~~v~~wL~si~c 27 (85)
T 1ow5_A 3 HHHHHGDEKTNDLPFVQLFLEEIGC 27 (85)
T ss_dssp -------------CHHHHHHHHHSC
T ss_pred cccccccccccchHHHHHHHHHcCC
Confidence 3445667777655 67889999977
No 15
>1vf5_B Subunit IV; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.32.1.1 PDB: 2d2c_B* 2e74_B* 2e75_B* 2e76_B* 2zt9_B* 1q90_D*
Probab=34.24 E-value=44 Score=25.83 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=29.0
Q ss_pred CCcchhhhHHHh--------hhhHHHhhhHhhhhhhhcccccc----CCCChhHHHHH
Q 031348 102 QLSGLALWVNAL--------GCSLLVSLASLICLVLLPVIFIQ----GKPSKAVVDSL 147 (161)
Q Consensus 102 ~~s~~~LW~~AL--------GsTlLIS~APf~iLf~IPv~~~~----g~~~q~lLKVL 147 (161)
++.++-+|.||+ |+++ .=++++++|+++|....+ +...+|+-+++
T Consensus 76 ~PEWYFLf~YaILRsiPnKlgGVi-al~~siliL~~lP~ld~~~~~r~~~~rP~~~~~ 132 (160)
T 1vf5_B 76 LPEWYLYPVFQILRSLPNKLLGVL-LMASVPLGLILVPFIENVNKFQNPFRRPVATTI 132 (160)
T ss_dssp CCTTTTHHHHHHHTTSCSTTHHHH-HHHHHHHHHHTHHHHSCSCSSSCTTSCHHHHHH
T ss_pred CCcchhhHHHHHHHhcchhhHhHH-HHHHHHHHHHHHHHhcccCCCCCCccCcHHHHH
Confidence 567788999998 3333 336678899999986211 22345665643
No 16
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=33.24 E-value=4 Score=34.63 Aligned_cols=10 Identities=50% Similarity=0.451 Sum_probs=4.4
Q ss_pred hHHHhhhhHH
Q 031348 109 WVNALGCSLL 118 (161)
Q Consensus 109 W~~ALGsTlL 118 (161)
.+-++|+..|
T Consensus 27 IVIklGGnAL 36 (332)
T 4axs_A 27 IVIALGGNAL 36 (332)
T ss_dssp EEEEECGGGG
T ss_pred EEEEEChhhc
Confidence 3334544443
No 17
>3pnr_B Pbicp-C; immunoglobulin fold, hydrolase-hydrolase inhibitor complex; 2.60A {Plasmodium berghei}
Probab=32.06 E-value=9.6 Score=31.03 Aligned_cols=7 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhcChhh
Q 031348 62 KMLLPEE 68 (161)
Q Consensus 62 ~~~lpee 68 (161)
-+|-++|
T Consensus 19 ~~l~gdE 25 (187)
T 3pnr_B 19 GRHMGDE 25 (187)
T ss_dssp -------
T ss_pred cccCCCC
Confidence 3444444
No 18
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=31.72 E-value=8.5 Score=30.13 Aligned_cols=6 Identities=0% Similarity=0.274 Sum_probs=2.5
Q ss_pred hhhHHH
Q 031348 107 ALWVNA 112 (161)
Q Consensus 107 ~LW~~A 112 (161)
+-|...
T Consensus 38 ~~l~~~ 43 (286)
T 1jr2_A 38 DPYIRE 43 (286)
T ss_dssp CHHHHH
T ss_pred cHHHHH
Confidence 444433
No 19
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=31.69 E-value=33 Score=28.75 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=14.7
Q ss_pred ccCCCC-CCCCCCCCCCCCCCCCCCCcchhhhHHHhhhh
Q 031348 79 GFGPYY-GHDHDHGHSHHHHDRDSQLSGLALWVNALGCS 116 (161)
Q Consensus 79 ~fg~~~-~H~h~h~h~H~h~h~~~~~s~~~LW~~ALGsT 116 (161)
|-|+.. .|+|+|+|+|++.+ ..++..+++..||-+-
T Consensus 10 ~~~~~~~~~~h~h~~~~~~~~--~~~~~~~~r~~Al~~l 46 (226)
T 3qyh_A 10 GRGSEFMGQSHTHDHHHDGYQ--APPEDIALRVKALESL 46 (226)
T ss_dssp ------------CCCSSSSCS--CCCTTHHHHHHHHHHH
T ss_pred cccchhhccCCccCCCCcccc--CCcCcHHHHHHHHHHH
Confidence 445444 34555555555444 3566667787777543
No 20
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=31.21 E-value=11 Score=35.07 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=7.8
Q ss_pred CCCChhHHHHHHhc
Q 031348 137 GKPSKAVVDSLAVF 150 (161)
Q Consensus 137 g~~~q~lLKVLLsF 150 (161)
+...+.+|.|.+-.
T Consensus 148 T~sasDlL~V~~L~ 161 (560)
T 3odm_A 148 IETGKEISEFQDRV 161 (560)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 34556666665544
No 21
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=30.68 E-value=7.8 Score=27.94 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=16.4
Q ss_pred hhcCh-hhhhhhcccceecc
Q 031348 62 KMLLP-EELAEEEDMKLYGF 80 (161)
Q Consensus 62 ~~~lp-eelaee~d~~~~~f 80 (161)
-+.|| ..+-.|+=|+|||+
T Consensus 21 vk~l~~~~ps~~~~L~LYaL 40 (96)
T 2lbb_A 21 VSNTTTMMASNDDKLCFYKY 40 (96)
T ss_dssp HHHCCCSCCCTTTTTHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHH
Confidence 35699 99999999999997
No 22
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=30.52 E-value=11 Score=28.94 Aligned_cols=7 Identities=14% Similarity=0.211 Sum_probs=3.7
Q ss_pred hhhHHHh
Q 031348 114 GCSLLVS 120 (161)
Q Consensus 114 GsTlLIS 120 (161)
|+|-.|+
T Consensus 51 GasggIG 57 (285)
T 2c07_A 51 GAGRGIG 57 (285)
T ss_dssp STTSHHH
T ss_pred CCCcHHH
Confidence 5555555
No 23
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=30.15 E-value=11 Score=32.61 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=0.0
Q ss_pred hhcChhhh
Q 031348 62 KMLLPEEL 69 (161)
Q Consensus 62 ~~~lpeel 69 (161)
.+.|-|.-
T Consensus 21 ~~~~~~~~ 28 (357)
T 2apo_A 21 HMILLEKT 28 (357)
T ss_dssp --------
T ss_pred EEEeehhh
Confidence 34554443
No 24
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=28.93 E-value=11 Score=32.62 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=3.3
Q ss_pred ccceeccC
Q 031348 74 DMKLYGFG 81 (161)
Q Consensus 74 d~~~~~fg 81 (161)
..++..+.
T Consensus 38 G~~V~v~~ 45 (480)
T 2zyd_A 38 GYTVSIFN 45 (480)
T ss_dssp TCCEEEEC
T ss_pred CCeEEEEe
Confidence 33444443
No 25
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=28.65 E-value=6.5 Score=33.09 Aligned_cols=12 Identities=8% Similarity=0.282 Sum_probs=6.8
Q ss_pred cCCCChhHHHHH
Q 031348 136 QGKPSKAVVDSL 147 (161)
Q Consensus 136 ~g~~~q~lLKVL 147 (161)
++++.+++.++|
T Consensus 73 ~g~T~~el~~~L 84 (395)
T 3b9f_I 73 GSSTKMQILEGL 84 (395)
T ss_dssp CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHh
Confidence 345556666655
No 26
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=27.91 E-value=23 Score=25.37 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=7.7
Q ss_pred chhhhhcChhhhhhh
Q 031348 58 HKEKKMLLPEELAEE 72 (161)
Q Consensus 58 ~h~~~~~lpeelaee 72 (161)
+.+.+-.=.+|+|++
T Consensus 11 ~~~lkW~D~~dIA~~ 25 (77)
T 1uj8_A 11 GSGLKWTDSREIGEA 25 (77)
T ss_dssp SSCBCTTCHHHHHHH
T ss_pred CCCCCCcCHHHHHHH
Confidence 555444445555554
No 27
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=26.64 E-value=14 Score=31.19 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=6.2
Q ss_pred Chhhhhhhccc
Q 031348 65 LPEELAEEEDM 75 (161)
Q Consensus 65 lpeelaee~d~ 75 (161)
+|---.++-|+
T Consensus 28 ~plK~t~~vd~ 38 (380)
T 3c3r_A 28 VQLKKTSEVDL 38 (380)
T ss_dssp CCCCCBCCCCC
T ss_pred CCCCCCCcCCh
Confidence 55555556565
No 28
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=26.47 E-value=23 Score=26.16 Aligned_cols=18 Identities=44% Similarity=0.761 Sum_probs=16.0
Q ss_pred hhhhhhcccceeccCCCC
Q 031348 67 EELAEEEDMKLYGFGPYY 84 (161)
Q Consensus 67 eelaee~d~~~~~fg~~~ 84 (161)
++||++.+-+-.|+|...
T Consensus 105 ~~lA~~~~G~YDGWGt~~ 122 (132)
T 1nxi_A 105 VNLAEKFDIIYDGWGTYY 122 (132)
T ss_dssp HHHHHHHTCEEEEEEECC
T ss_pred HHHHHHhCcEeeCcceEE
Confidence 459999999999999887
No 29
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=24.59 E-value=16 Score=29.41 Aligned_cols=9 Identities=11% Similarity=0.301 Sum_probs=3.8
Q ss_pred hHHHHHHhc
Q 031348 142 AVVDSLAVF 150 (161)
Q Consensus 142 ~lLKVLLsF 150 (161)
.++..++.|
T Consensus 94 ~Fi~avInF 102 (174)
T 2oar_A 94 VLLSAAINF 102 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 30
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=24.32 E-value=16 Score=26.97 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=6.5
Q ss_pred hHhhhhhhhccc
Q 031348 122 ASLICLVLLPVI 133 (161)
Q Consensus 122 APf~iLf~IPv~ 133 (161)
.+++.+..+|-.
T Consensus 88 ~k~vFI~w~Pd~ 99 (139)
T 2l72_A 88 NKIQFVLWCPDN 99 (139)
T ss_dssp SCEEEEEECCTT
T ss_pred CcEEEEEECCCC
Confidence 355555556654
No 31
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=23.98 E-value=26 Score=28.69 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=16.4
Q ss_pred hhcChhhhhhhcccceecc
Q 031348 62 KMLLPEELAEEEDMKLYGF 80 (161)
Q Consensus 62 ~~~lpeelaee~d~~~~~f 80 (161)
.+.+|.+|+|+.++++--+
T Consensus 231 ~~~vP~~l~~k~~l~lp~y 249 (265)
T 2o8n_A 231 GRFVPPALEKKYQLNLPSY 249 (265)
T ss_dssp CCCCCHHHHHHTTCCCCCC
T ss_pred CeecCHHHHHHhCCCCCCC
Confidence 4669999999999998765
No 32
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=23.54 E-value=17 Score=27.70 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=0.0
Q ss_pred chhhhhcChhh
Q 031348 58 HKEKKMLLPEE 68 (161)
Q Consensus 58 ~h~~~~~lpee 68 (161)
+-.+|+|+.||
T Consensus 241 ~~~~~~~~~~~ 251 (257)
T 3bn9_D 241 GAAEQKLISEE 251 (257)
T ss_dssp -----------
T ss_pred chhhhhccchh
Confidence 44467766554
No 33
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=23.48 E-value=17 Score=28.11 Aligned_cols=6 Identities=67% Similarity=1.409 Sum_probs=0.0
Q ss_pred CCCCCC
Q 031348 87 DHDHGH 92 (161)
Q Consensus 87 ~h~h~h 92 (161)
||||+|
T Consensus 5 ~~~~~~ 10 (321)
T 2x7q_A 5 HHHHGH 10 (321)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 34
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=23.40 E-value=27 Score=25.24 Aligned_cols=21 Identities=24% Similarity=0.090 Sum_probs=14.4
Q ss_pred hhhcChhhhhhhcc--cceeccC
Q 031348 61 KKMLLPEELAEEED--MKLYGFG 81 (161)
Q Consensus 61 ~~~~lpeelaee~d--~~~~~fg 81 (161)
..+.++|+=|.|+= |+--||-
T Consensus 12 ~~~~~~E~eA~eAC~WLRaaGFP 34 (81)
T 2h80_A 12 VPRGSQEIEAKEACDWLRAAGFP 34 (81)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCc
Confidence 56778988888864 4455554
No 35
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=23.31 E-value=17 Score=31.50 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=6.6
Q ss_pred hhhHHHhhhHhh
Q 031348 114 GCSLLVSLASLI 125 (161)
Q Consensus 114 GsTlLIS~APf~ 125 (161)
.+-++|+++|..
T Consensus 88 ~~DvVIn~tp~~ 99 (467)
T 2axq_A 88 DNDVVISLIPYT 99 (467)
T ss_dssp TSSEEEECSCGG
T ss_pred CCCEEEECCchh
Confidence 345566666543
No 36
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=23.07 E-value=17 Score=27.64 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=3.8
Q ss_pred hhhhhhccc
Q 031348 125 ICLVLLPVI 133 (161)
Q Consensus 125 ~iLf~IPv~ 133 (161)
++|+|.|-.
T Consensus 59 vvl~F~pat 67 (221)
T 2c0d_A 59 CCLLFYPLN 67 (221)
T ss_dssp EEEEECCCC
T ss_pred EEEEEEcCC
Confidence 344444433
No 37
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=22.90 E-value=18 Score=32.68 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHhhhhHHHhhhHhhhh
Q 031348 111 NALGCSLLVSLASLICL 127 (161)
Q Consensus 111 ~ALGsTlLIS~APf~iL 127 (161)
|--+|-+-|++.|+++-
T Consensus 23 ykkfcflgigllplvla 39 (564)
T 4faj_A 23 YKKFCFLGIGLLPLVLA 39 (564)
T ss_dssp -----------------
T ss_pred hhhheeecccHHHHHHH
Confidence 44567788888886543
No 38
>3ako_A Venus; fluorescent protein, GFP; HET: CR2 PE8; 2.10A {Plant transformation vector psiteii-4corganism_taxid}
Probab=22.90 E-value=21 Score=28.82 Aligned_cols=14 Identities=7% Similarity=-0.171 Sum_probs=6.8
Q ss_pred Chhhhhhhccccee
Q 031348 65 LPEELAEEEDMKLY 78 (161)
Q Consensus 65 lpeelaee~d~~~~ 78 (161)
-||-+.++--+|++
T Consensus 25 g~~~i~~~m~~k~~ 38 (173)
T 3ako_A 25 GEELFTGVVPILVE 38 (173)
T ss_dssp GGGGGSSEEEEEEE
T ss_pred hhhhccCCceEEEE
Confidence 34445555445544
No 39
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.58 E-value=18 Score=25.62 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=7.2
Q ss_pred Chhhhhhhcccc
Q 031348 65 LPEELAEEEDMK 76 (161)
Q Consensus 65 lpeelaee~d~~ 76 (161)
||++. .|+||+
T Consensus 24 Lp~~v-te~dL~ 34 (105)
T 1sjq_A 24 LPIDV-TEGEVI 34 (105)
T ss_dssp CCTTS-CHHHHH
T ss_pred CCCCC-CHHHHH
Confidence 89885 455554
No 40
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=21.39 E-value=20 Score=30.59 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=0.0
Q ss_pred cceeccC
Q 031348 75 MKLYGFG 81 (161)
Q Consensus 75 ~~~~~fg 81 (161)
++.+++|
T Consensus 27 ~~~~~~~ 33 (433)
T 4e4j_A 27 IDKNSLG 33 (433)
T ss_dssp -------
T ss_pred hhhhhCC
Confidence 3333333
No 41
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=21.08 E-value=18 Score=28.38 Aligned_cols=10 Identities=60% Similarity=1.172 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 031348 86 HDHDHGHSHH 95 (161)
Q Consensus 86 H~h~h~h~H~ 95 (161)
|||||+|+|+
T Consensus 2 ~~~~~~~~~~ 11 (398)
T 3oti_A 2 HHHHHHHHHH 11 (398)
T ss_dssp ----------
T ss_pred CCcccccccc
Confidence 3444444444
No 42
>2f6s_A Cell filamentation protein, putative; structural PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.50A {Helicobacter pylori} SCOP: a.265.1.1
Probab=20.89 E-value=17 Score=28.14 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=11.6
Q ss_pred hhhhccccccCCCChhHHHHHH
Q 031348 127 LVLLPVIFIQGKPSKAVVDSLA 148 (161)
Q Consensus 127 Lf~IPv~~~~g~~~q~lLKVLL 148 (161)
..+=|+.-+||-..+-++..+|
T Consensus 115 ~~IHPF~DGNGRt~Rll~~~~L 136 (201)
T 2f6s_A 115 NIAHPFLEGNGRATRIWLDLLL 136 (201)
T ss_dssp HHHCCSSSCHHHHHHHHHHHHH
T ss_pred eEeccCCCCChHHHHHHHHHHH
Confidence 3344666545555555555555
No 43
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=20.74 E-value=40 Score=26.59 Aligned_cols=9 Identities=44% Similarity=0.737 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q 031348 94 HHHHDRDSQ 102 (161)
Q Consensus 94 H~h~h~~~~ 102 (161)
|||-..+.+
T Consensus 7 ~~~~~~~~~ 15 (192)
T 3rlb_A 7 HHHAMSNSK 15 (192)
T ss_dssp ---------
T ss_pred hhhhhhcch
Confidence 334444443
No 44
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=20.60 E-value=21 Score=30.70 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=6.8
Q ss_pred hHhhhhhhhccc
Q 031348 122 ASLICLVLLPVI 133 (161)
Q Consensus 122 APf~iLf~IPv~ 133 (161)
.|+|+++=||--
T Consensus 91 ~pvlVvY~lP~R 102 (315)
T 1uoz_A 91 MPVLTLYGIPHR 102 (315)
T ss_dssp BCEEEECCCTTB
T ss_pred CcEEEEeCCCCC
Confidence 355666666654
No 45
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=20.15 E-value=27 Score=25.64 Aligned_cols=24 Identities=4% Similarity=-0.209 Sum_probs=18.0
Q ss_pred chhhhhcChhhhhhhcccceeccC
Q 031348 58 HKEKKMLLPEELAEEEDMKLYGFG 81 (161)
Q Consensus 58 ~h~~~~~lpeelaee~d~~~~~fg 81 (161)
||..-|-+.++.++|..+.|...-
T Consensus 9 ~~~~~~~~~~~~~~~yPl~L~TgR 32 (146)
T 2ki8_A 9 HHSSGRENLYFQGHMLEVEVISGR 32 (146)
T ss_dssp CCCCCCCCCCCCCCCEEEEEEEEC
T ss_pred cccccccccccCCCCccEEEECCC
Confidence 456667788888888888887633
Done!