Query 031348
Match_columns 161
No_of_seqs 62 out of 64
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 20:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031348.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031348hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g99a1 c.55.1.2 (A:1-197) Ace 49.9 2.1 0.00015 31.4 0.6 16 65-80 164-179 (197)
2 d2e1za1 c.55.1.2 (A:4-192) Pro 48.2 2.4 0.00018 31.3 0.8 16 65-80 156-171 (189)
3 d3cx5c1 f.32.1.1 (C:262-385) M 32.7 33 0.0024 23.5 4.8 46 102-147 9-64 (124)
4 d1be3k_ f.23.15.1 (K:) Subunit 32.4 9.5 0.00069 21.0 1.4 17 104-121 5-21 (26)
5 d1q90d_ f.32.1.1 (D:) Subunit 30.8 32 0.0023 24.8 4.6 33 102-134 73-112 (156)
6 d1oyja2 c.47.1.5 (A:2-85) Clas 25.1 8.3 0.0006 24.3 0.3 12 70-81 1-12 (84)
7 d1pxea_ g.73.1.1 (A:) Neural z 23.4 30 0.0022 21.3 2.7 14 61-74 32-45 (48)
8 d1ppjc1 f.32.1.1 (C:261-379) M 22.2 71 0.0051 21.7 5.0 48 102-149 9-66 (119)
9 d1nxia_ d.58.47.1 (A:) Hypothe 17.5 25 0.0018 24.5 1.6 18 67-84 105-122 (132)
10 d1r7ma1 d.95.2.1 (A:3-120) DNA 14.9 9.7 0.0007 26.1 -1.2 17 145-161 29-45 (118)
No 1
>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=49.92 E-value=2.1 Score=31.39 Aligned_cols=16 Identities=44% Similarity=0.881 Sum_probs=15.6
Q ss_pred Chhhhhhhcccceecc
Q 031348 65 LPEELAEEEDMKLYGF 80 (161)
Q Consensus 65 lpeelaee~d~~~~~f 80 (161)
||+|++|+..+++|||
T Consensus 164 lP~~~~~~~giRRyGF 179 (197)
T d1g99a1 164 LPYDLYEKHGVRKYGF 179 (197)
T ss_dssp SCHHHHHHHCCSCCCS
T ss_pred CCHHHHHHcCCeEeee
Confidence 9999999999999999
No 2
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}
Probab=48.20 E-value=2.4 Score=31.32 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=15.6
Q ss_pred Chhhhhhhcccceecc
Q 031348 65 LPEELAEEEDMKLYGF 80 (161)
Q Consensus 65 lpeelaee~d~~~~~f 80 (161)
||++++||..+++|||
T Consensus 156 lP~~~~~~~gIRRYGF 171 (189)
T d2e1za1 156 LPWEYFSSLGVRRYGF 171 (189)
T ss_dssp SCHHHHHTTCCSCCCS
T ss_pred CCHHHHHhcCceeech
Confidence 9999999999999999
No 3
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.66 E-value=33 Score=23.50 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=29.8
Q ss_pred CCcchhhhHHHhh-------hhHHHhhhHhhhhhhhcccc---ccCCCChhHHHHH
Q 031348 102 QLSGLALWVNALG-------CSLLVSLASLICLVLLPVIF---IQGKPSKAVVDSL 147 (161)
Q Consensus 102 ~~s~~~LW~~ALG-------sTlLIS~APf~iLf~IPv~~---~~g~~~q~lLKVL 147 (161)
++...=+|.||+- .-++.=++++++|+++|... .++...+++-|++
T Consensus 9 ~PEWYFl~~YaiLRsiP~k~~Gvl~~~~si~il~~lP~l~~s~~~s~~~rp~~k~~ 64 (124)
T d3cx5c1 9 VPEWYLLPFYAILRSIPDKLLGVITMFAAILVLLVLPFTDRSVVRGNTFKVLSKFF 64 (124)
T ss_dssp CCCGGGHHHHHHHHTSSSHHHHHHHHHHHHHGGGGHHHHCCCSSSSSTTCHHHHHH
T ss_pred CcchHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHH
Confidence 4667778999982 33455577788999999863 1223455666644
No 4
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.35 E-value=9.5 Score=20.97 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=13.5
Q ss_pred cchhhhHHHhhhhHHHhh
Q 031348 104 SGLALWVNALGCSLLVSL 121 (161)
Q Consensus 104 s~~~LW~~ALGsTlLIS~ 121 (161)
++.++|. |.|+.-|+|+
T Consensus 5 ptaqlwg-avgavglvsa 21 (26)
T d1be3k_ 5 PTAQLWG-AVGAVGLVSA 21 (26)
T ss_dssp HHHHHHH-HHHHHHHHHH
T ss_pred hHHHHHh-hhcceeEEee
Confidence 3568998 8899888885
No 5
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=30.80 E-value=32 Score=24.78 Aligned_cols=33 Identities=18% Similarity=-0.014 Sum_probs=23.1
Q ss_pred CCcchhhhHHHhhh-------hHHHhhhHhhhhhhhcccc
Q 031348 102 QLSGLALWVNALGC-------SLLVSLASLICLVLLPVIF 134 (161)
Q Consensus 102 ~~s~~~LW~~ALGs-------TlLIS~APf~iLf~IPv~~ 134 (161)
++.+.-+|.|||-. .+++-++.+++|+++|...
T Consensus 73 ~PEWYFL~~yaiLR~iP~kl~GVi~~~~~i~~L~~lP~l~ 112 (156)
T d1q90d_ 73 LPEWYFYPVFQILRVVPNKLLGVLLMAAVPAGLITVPFIE 112 (156)
T ss_dssp CCCGGGHHHHHHHHHCSCHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CcchhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc
Confidence 57788899999832 2444455567788889864
No 6
>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}
Probab=25.10 E-value=8.3 Score=24.28 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=11.0
Q ss_pred hhhcccceeccC
Q 031348 70 AEEEDMKLYGFG 81 (161)
Q Consensus 70 aee~d~~~~~fg 81 (161)
|||.+|+|||+-
T Consensus 1 a~~~~l~Ly~~~ 12 (84)
T d1oyja2 1 AEEKELVLLDFW 12 (84)
T ss_dssp CCSCCEEEEECT
T ss_pred CCCCceEEEcCC
Confidence 799999999986
No 7
>d1pxea_ g.73.1.1 (A:) Neural zinc finger transcription factor 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.40 E-value=30 Score=21.27 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=10.2
Q ss_pred hhhcChhhhhhhcc
Q 031348 61 KKMLLPEELAEEED 74 (161)
Q Consensus 61 ~~~~lpeelaee~d 74 (161)
..+..||++|.+|+
T Consensus 32 a~~~~~~~~a~~e~ 45 (48)
T d1pxea_ 32 KDRVPPEILAMHEN 45 (48)
T ss_dssp CCSSSSSSTTSSSC
T ss_pred cccchhHHhhhhhc
Confidence 44668899988765
No 8
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.24 E-value=71 Score=21.72 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=29.7
Q ss_pred CCcchhhhHHHhh-------hhHHHhhhHhhhhhhhccccc---cCCCChhHHHHHHh
Q 031348 102 QLSGLALWVNALG-------CSLLVSLASLICLVLLPVIFI---QGKPSKAVVDSLAV 149 (161)
Q Consensus 102 ~~s~~~LW~~ALG-------sTlLIS~APf~iLf~IPv~~~---~g~~~q~lLKVLLs 149 (161)
++...=+|.||+- .-++.=++++++|+++|.... ++...+++-|++..
T Consensus 9 ~PEWYFL~~YaiLRsipnK~gGvl~m~~si~il~~lP~l~~~~~~s~~~~~~~~~~fw 66 (119)
T d1ppjc1 9 KPEWYFLFAYAILRSIPNKLGGVLALAFSILILALIPLLHTSKQRSMMFRPLSQCLFW 66 (119)
T ss_dssp CCCGGGHHHHHHHHTCSSHHHHHHHHHHHHHGGGTHHHHCCCSSSSSTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHhcccCCCCeeChHHHHHHH
Confidence 4566778899982 233444678889999996531 12334566665543
No 9
>d1nxia_ d.58.47.1 (A:) Hypothetical protein VC0424 {Vibrio cholerae [TaxId: 666]}
Probab=17.54 E-value=25 Score=24.52 Aligned_cols=18 Identities=44% Similarity=0.761 Sum_probs=16.5
Q ss_pred hhhhhhcccceeccCCCC
Q 031348 67 EELAEEEDMKLYGFGPYY 84 (161)
Q Consensus 67 eelaee~d~~~~~fg~~~ 84 (161)
.+||++.+-.-+|+|-+.
T Consensus 105 ~~LA~~~~g~YDGWGTy~ 122 (132)
T d1nxia_ 105 VNLAEKFDIIYDGWGTYY 122 (132)
T ss_dssp HHHHHHHTCEEEEEEECC
T ss_pred HHHHHHhCcEeeCcccch
Confidence 579999999999999888
No 10
>d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.92 E-value=9.7 Score=26.12 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=12.3
Q ss_pred HHHHhccccccccccCC
Q 031348 145 DSLAVFGVRFFISHLCI 161 (161)
Q Consensus 145 KVLLsFAsGGLLGDA~~ 161 (161)
+.......|.||||+-|
T Consensus 29 ~~q~eilvG~LLGDg~i 45 (118)
T d1r7ma1 29 IEQFEAGIGLILGDAYI 45 (118)
T ss_dssp HHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhhccccEE
Confidence 34455778999999853
Done!