Query 031349
Match_columns 161
No_of_seqs 31 out of 33
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 12:50:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00054 photosystem I reactio 100.0 3.8E-51 8.2E-56 320.5 7.1 109 34-144 1-111 (139)
2 PF05479 PsaN: Photosystem I r 100.0 4.5E-48 9.9E-53 302.9 -2.7 104 38-144 8-111 (138)
3 PLN00078 photosystem I reactio 99.8 1.3E-21 2.9E-26 151.3 0.2 87 52-145 27-114 (122)
4 KOG3381 Uncharacterized conser 81.5 0.46 9.9E-06 39.2 -0.0 17 97-113 129-145 (161)
5 COG5133 Uncharacterized conser 73.1 1.2 2.6E-05 37.2 0.2 20 95-114 147-166 (181)
6 PF07172 GRP: Glycine rich pro 54.1 8.3 0.00018 28.5 1.5 14 94-107 32-45 (95)
7 PLN00064 photosystem II protei 41.7 37 0.0008 28.3 3.6 42 52-94 27-68 (166)
8 PF05757 PsbQ: Oxygen evolving 37.1 9 0.00019 31.9 -0.6 25 42-70 16-40 (202)
9 TIGR02811 formate_TAT formate 35.3 55 0.0012 22.8 3.2 16 55-70 5-20 (66)
10 PLN00042 photosystem II oxygen 30.5 65 0.0014 28.3 3.5 42 58-102 49-92 (260)
11 PF12650 DUF3784: Domain of un 27.8 19 0.00042 25.2 -0.1 25 85-109 19-43 (97)
12 PF10399 UCR_Fe-S_N: Ubiquitin 26.2 68 0.0015 20.8 2.3 19 57-75 7-25 (41)
13 TIGR03044 PS_II_psb27 photosys 25.9 84 0.0018 25.3 3.2 32 63-97 11-42 (135)
14 PF11022 DUF2611: Protein of u 24.9 1.3E+02 0.0028 21.6 3.7 16 86-101 54-69 (71)
15 PF13350 Y_phosphatase3: Tyros 24.7 81 0.0018 23.5 2.8 32 55-94 131-162 (164)
16 PF14285 DUF4367: Domain of un 21.9 1.1E+02 0.0024 22.1 2.9 30 61-90 3-32 (168)
17 PRK14139 heat shock protein Gr 21.1 32 0.00069 28.2 -0.0 27 91-117 40-67 (185)
18 PF15240 Pro-rich: Proline-ric 21.0 61 0.0013 27.0 1.6 25 64-91 2-26 (179)
19 PF12318 FAD-SLDH: Membrane bo 20.5 1.5E+02 0.0032 23.6 3.6 15 84-98 34-48 (168)
No 1
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=100.00 E-value=3.8e-51 Score=320.51 Aligned_cols=109 Identities=69% Similarity=0.912 Sum_probs=103.8
Q ss_pred CcccccCccceeheeccc--cccccCCchhHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhhhhhhhhhhhhhccc
Q 031349 34 PAVHGHKMPVIRAQQVDV--SKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATS 111 (161)
Q Consensus 34 p~~~~~klPvira~~~~~--~~~~r~~~gRRaal~~LAa~l~~tAa~a~a~~A~Agv~~dyL~KSkaNKELNDKkRlaTs 111 (161)
+++++.++|+|++|++.. +...++++|||++|++||++|++++ +.+++||||||+|||+|||+|||||||||||||
T Consensus 1 ~~~s~~~~~~ika~r~~~A~~~~~~~~~grraa~~~Laa~l~~~a--a~~~~AnAgv~~d~L~kS~aNKeLNDKKRlATS 78 (139)
T PLN00054 1 GAVSQMKMPVIKAQRVVRATGAVVDASDGRRAALVGLAATLFSTA--AAAASANAGVISDLLAKSKANKELNDKKRLATS 78 (139)
T ss_pred CccccccccccccccccccccchhccccchHHHHHHHHHHHHHHH--hcccccchhHHHHHHHHhhhhhhhhhHHhhhhc
Confidence 457889999999999884 7778999999999999999999987 889999999999999999999999999999999
Q ss_pred cccchhheeeeecceecCCCccchhhhhhhcce
Q 031349 112 GANFARAYTVQFGTCKFPENFTGCQDLAKQKVF 144 (161)
Q Consensus 112 ~aNfaRaytv~fG~ckfP~nf~gcqdLAk~k~~ 144 (161)
++||+|+||||||+|+||+|||||||||+||+|
T Consensus 79 ~ANfaRa~TV~~G~C~FP~Nf~GCqdlA~~k~V 111 (139)
T PLN00054 79 GANFARSRTVQDGTCKFPENFTGCEDLAKQKKV 111 (139)
T ss_pred chhhhhheeeecccccCCcccccHHHHHhcCCC
Confidence 999999999999999999999999999999987
No 2
>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.
Probab=100.00 E-value=4.5e-48 Score=302.93 Aligned_cols=104 Identities=67% Similarity=0.931 Sum_probs=48.7
Q ss_pred ccCccceeheeccccccccCCchhHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhhhhhhhhhhhhhccccccchh
Q 031349 38 GHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR 117 (161)
Q Consensus 38 ~~klPvira~~~~~~~~~r~~~gRRaal~~LAa~l~~tAa~a~a~~A~Agv~~dyL~KSkaNKELNDKkRlaTs~aNfaR 117 (161)
..++|+|++++... ...+.+++||+++++|+++|++|| +.+++||+|||||||+|||+||||||||||+||++||+|
T Consensus 8 sa~~qai~~~ka~~-~~~~~~~~~Raall~Laa~l~~tA--a~a~~A~A~l~~dyL~KSkaNKelNDKkRlaTs~aNfaR 84 (138)
T PF05479_consen 8 SAKVQAIRAAKAKR-VVVRASDGRRAALLGLAAVLAATA--ASASSARAGLLEDYLEKSKANKELNDKKRLATSYANFAR 84 (138)
T ss_dssp ---------------------------------------------------SSSSS-SSHSSSSSTTTSS-TSSSSSSTS
T ss_pred hcccchhhhccCCC-cccccCccchHHHHHHHHHHHHHh--hcCcchhhHHHHHHHHHhHhhhhhhhHHHhhhhhhhhhh
Confidence 45889999998774 456778899999999999999887 678999999999999999999999999999999999999
Q ss_pred heeeeecceecCCCccchhhhhhhcce
Q 031349 118 AYTVQFGTCKFPENFTGCQDLAKQKVF 144 (161)
Q Consensus 118 aytv~fG~ckfP~nf~gcqdLAk~k~~ 144 (161)
+||||||+|+||+|||||||||+||+|
T Consensus 85 ~~tv~fg~c~fP~n~~gc~~la~~~~v 111 (138)
T PF05479_consen 85 AYTVQFGTCKFPENFTGCQDLAKQKKV 111 (138)
T ss_dssp GTT--TSTSSSSS-SSSSSSS-STT-T
T ss_pred heeeecccccCCccchhhHHHHHcCCC
Confidence 999999999999999999999999997
No 3
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=99.82 E-value=1.3e-21 Score=151.33 Aligned_cols=87 Identities=30% Similarity=0.420 Sum_probs=82.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHhhhhh-cccccchhhHHHHHHHhhhhhhhhhhhhhccccccchhheeeeecceecCC
Q 031349 52 SKESRGTDGRRAAMALLAVTLFTTATAA-ASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPE 130 (161)
Q Consensus 52 ~~~~r~~~gRRaal~~LAa~l~~tAa~a-~a~~A~Agv~~dyL~KSkaNKELNDKkRlaTs~aNfaRaytv~fG~ckfP~ 130 (161)
..++|||.+||++|++|.+ ||||+ .++.++..+||+||+||++|||.|||+|| |++|+|+|++||++.+++.
T Consensus 27 ~~a~rng~srr~llt~l~s----taaip~~~~~Sr~~liq~llkkSeeNKakndkERL---DdYYKRNykDYF~fveG~~ 99 (122)
T PLN00078 27 MLAQRNGISRRCLLTFLTS----TAAIPEAGSESRKALLQEYLKKSEENKEKNDKERL---DDYYKRNYKDYFGLIEGPA 99 (122)
T ss_pred HHHHhcchhHHHHHHHHHh----hccCCCCcCchHHHHHHHHHHHhHHhHHHhHHHHH---HHHHHHhHHHHHHHhcccc
Confidence 4579999999999999999 88888 78899999999999999999999999999 9999999999999999999
Q ss_pred Cccchhhhhhhccee
Q 031349 131 NFTGCQDLAKQKVFI 145 (161)
Q Consensus 131 nf~gcqdLAk~k~~~ 145 (161)
..+..++|.|+.|-|
T Consensus 100 r~kke~eLsEsEK~I 114 (122)
T PLN00078 100 REKKEDELTESEKGI 114 (122)
T ss_pred ccCChhhcCHHHHHH
Confidence 999999999987755
No 4
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.49 E-value=0.46 Score=39.17 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=13.6
Q ss_pred hhhhhhhhhhhhccccc
Q 031349 97 KANKELNDQKRLATSGA 113 (161)
Q Consensus 97 kaNKELNDKkRlaTs~a 113 (161)
.-||.||||+|.|..-.
T Consensus 129 ~vNKQLnDKERVaAA~E 145 (161)
T KOG3381|consen 129 AVNKQLNDKERVAAALE 145 (161)
T ss_pred HHHhhhccHHHHHHHhc
Confidence 46999999999976443
No 5
>COG5133 Uncharacterized conserved protein [Function unknown]
Probab=73.11 E-value=1.2 Score=37.18 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=15.3
Q ss_pred Hhhhhhhhhhhhhhcccccc
Q 031349 95 RSKANKELNDQKRLATSGAN 114 (161)
Q Consensus 95 KSkaNKELNDKkRlaTs~aN 114 (161)
.+.-||.||||+|.|..-.|
T Consensus 147 e~qvNKQLnDKeRVaAAcEN 166 (181)
T COG5133 147 ERQVNKQLNDKERVAAACEN 166 (181)
T ss_pred HHHHhhhhchHHHHHHhhch
Confidence 35679999999999765433
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=54.12 E-value=8.3 Score=28.47 Aligned_cols=14 Identities=29% Similarity=0.537 Sum_probs=7.9
Q ss_pred HHhhhhhhhhhhhh
Q 031349 94 ERSKANKELNDQKR 107 (161)
Q Consensus 94 ~KSkaNKELNDKkR 107 (161)
++..+.++.+|.|.
T Consensus 32 ~~~~~~~~v~~~~~ 45 (95)
T PF07172_consen 32 EKEEEENEVQDDKY 45 (95)
T ss_pred cccccCCCCCcccc
Confidence 55555566666553
No 7
>PLN00064 photosystem II protein Psb27; Provisional
Probab=41.66 E-value=37 Score=28.30 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=23.6
Q ss_pred cccccCCchhHHHHHHHHHHHHHhhhhhcccccchhhHHHHHH
Q 031349 52 SKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLE 94 (161)
Q Consensus 52 ~~~~r~~~gRRaal~~LAa~l~~tAa~a~a~~A~Agv~~dyL~ 94 (161)
+..+++..+||.+|.+.++++.+. ..-+..++.++-..||.+
T Consensus 27 ~~~~~~~~~rr~~~~~~~~~~~~~-~~~~~~~a~a~~~g~Y~~ 68 (166)
T PLN00064 27 PPPRRNHLLRREFLSLATTILTSA-ALLPVAPAFAASDEEYVK 68 (166)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHH-HhccCcchhhccCCChHH
Confidence 444566679999988665544432 233344455554555544
No 8
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=37.11 E-value=9 Score=31.93 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=0.0
Q ss_pred cceeheeccccccccCCchhHHHHHHHHH
Q 031349 42 PVIRAQQVDVSKESRGTDGRRAAMALLAV 70 (161)
Q Consensus 42 Pvira~~~~~~~~~r~~~gRRaal~~LAa 70 (161)
+++|+++ .......+||++|.+|++
T Consensus 16 ~~vra~~----~~~~~~~~RRa~l~~l~a 40 (202)
T PF05757_consen 16 VVVRASQ----SPAQQQTSRRAVLGSLLA 40 (202)
T ss_dssp -----------------------------
T ss_pred ceecccc----CcccccccHHHHHHHHHH
Confidence 5678876 223445789999884443
No 9
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=35.30 E-value=55 Score=22.82 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=11.1
Q ss_pred ccCCchhHHHHHHHHH
Q 031349 55 SRGTDGRRAAMALLAV 70 (161)
Q Consensus 55 ~r~~~gRRaal~~LAa 70 (161)
...+.+||-+|-+|+.
T Consensus 5 ~~~~~sRR~Flk~lg~ 20 (66)
T TIGR02811 5 QKADPSRRDLLKGLGV 20 (66)
T ss_pred ccCCccHHHHHHHHHH
Confidence 3445689998876655
No 10
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=30.50 E-value=65 Score=28.28 Aligned_cols=42 Identities=36% Similarity=0.345 Sum_probs=24.4
Q ss_pred CchhHHHHHHHHHHHHHhhhhhcccccchhhHHH--HHHHhhhhhhh
Q 031349 58 TDGRRAAMALLAVTLFTTATAAASSSANAGVIDE--YLERSKANKEL 102 (161)
Q Consensus 58 ~~gRRaal~~LAa~l~~tAa~a~a~~A~Agv~~d--yL~KSkaNKEL 102 (161)
..+||.+|++++.++... +...+|++..=|+ -.-|.|.++.-
T Consensus 49 ~~srr~~l~~~~ga~a~~---~~~~pa~aay~~~anvfg~~k~~~gF 92 (260)
T PLN00042 49 AVSRRAALALLAGAAAAG---AKVSPANAAYGESANVFGKPKTNTGF 92 (260)
T ss_pred cccHHHHHHHHHHHHHhh---cccCchhhhhcchhhccCCCCCCCCC
Confidence 368999988888753322 5566666655433 23345544443
No 11
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=27.82 E-value=19 Score=25.22 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.8
Q ss_pred chhhHHHHHHHhhhhhhhhhhhhhc
Q 031349 85 NAGVIDEYLERSKANKELNDQKRLA 109 (161)
Q Consensus 85 ~Agv~~dyL~KSkaNKELNDKkRla 109 (161)
..-++..|=-.||+.||+=|||+|.
T Consensus 19 ~~~LIaGyntms~eEk~~~D~~~l~ 43 (97)
T PF12650_consen 19 GYFLIAGYNTMSKEEKEKYDKKKLC 43 (97)
T ss_pred cccchhhcccCCHHHHHHhhHHHHH
Confidence 3468888999999999999999994
No 12
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=26.22 E-value=68 Score=20.76 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=10.2
Q ss_pred CCchhHHHHHHHHHHHHHh
Q 031349 57 GTDGRRAAMALLAVTLFTT 75 (161)
Q Consensus 57 ~~~gRRaal~~LAa~l~~t 75 (161)
...+||-.|...+++++..
T Consensus 7 ~~~~RRdFL~~at~~~gav 25 (41)
T PF10399_consen 7 VDPTRRDFLTIATSAVGAV 25 (41)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 3467888776666555443
No 13
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=25.88 E-value=84 Score=25.28 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhh
Q 031349 63 AAMALLAVTLFTTATAAASSSANAGVIDEYLERSK 97 (161)
Q Consensus 63 aal~~LAa~l~~tAa~a~a~~A~Agv~~dyL~KSk 97 (161)
++.++|..+|+.++ .++++..++..+|.+.+.
T Consensus 11 ~lal~L~~~l~l~~---c~~~~~~~Ltg~Y~~DT~ 42 (135)
T TIGR03044 11 ALALVLGLCLLLTA---CSGAAKTRLTGDYVEDTL 42 (135)
T ss_pred HHHHHHHHHHHHhc---ccCCCcccccchHHHHHH
Confidence 35566666677663 444678899999987654
No 14
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=24.86 E-value=1.3e+02 Score=21.65 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.5
Q ss_pred hhhHHHHHHHhhhhhh
Q 031349 86 AGVIDEYLERSKANKE 101 (161)
Q Consensus 86 Agv~~dyL~KSkaNKE 101 (161)
...|+|||++..+-++
T Consensus 54 E~fIk~fl~~~~~e~~ 69 (71)
T PF11022_consen 54 EKFIKEFLKEHEKEEK 69 (71)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4689999988765433
No 15
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=24.71 E-value=81 Score=23.48 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=18.9
Q ss_pred ccCCchhHHHHHHHHHHHHHhhhhhcccccchhhHHHHHH
Q 031349 55 SRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLE 94 (161)
Q Consensus 55 ~r~~~gRRaal~~LAa~l~~tAa~a~a~~A~Agv~~dyL~ 94 (161)
+.+|..|-..++.| ...+ .+.....+++||+.
T Consensus 131 C~aGKDRTG~~~al----ll~~----lGV~~~~I~~DY~l 162 (164)
T PF13350_consen 131 CTAGKDRTGVVAAL----LLSL----LGVPDEDIIADYLL 162 (164)
T ss_dssp -SSSSSHHHHHHHH----HHHH----TT--HHHHHHHHHG
T ss_pred CCCCCccHHHHHHH----HHHH----cCCCHHHHHHHHHh
Confidence 45566775554443 3343 67778999999974
No 16
>PF14285 DUF4367: Domain of unknown function (DUF4367)
Probab=21.90 E-value=1.1e+02 Score=22.05 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHhhhhhcccccchhhHH
Q 031349 61 RRAAMALLAVTLFTTATAAASSSANAGVID 90 (161)
Q Consensus 61 RRaal~~LAa~l~~tAa~a~a~~A~Agv~~ 90 (161)
||.+++++|+.+...++...+...+..+++
T Consensus 3 ~r~a~~~~a~~i~~~~~~~t~~a~~~~~~~ 32 (168)
T PF14285_consen 3 KRAAVAAAAVIILVFAASMTVQAVREKVYN 32 (168)
T ss_pred HHHHHHHHHHHHHHHhHhEEehHHhHHHHh
Confidence 566666555555544433434333445554
No 17
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.07 E-value=32 Score=28.22 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=13.8
Q ss_pred HHHHHhhhhhhhhhh-hhhccccccchh
Q 031349 91 EYLERSKANKELNDQ-KRLATSGANFAR 117 (161)
Q Consensus 91 dyL~KSkaNKELNDK-kRlaTs~aNfaR 117 (161)
+.-+.-++.+|+.|+ .|+...-.||.|
T Consensus 40 ~l~~le~e~~elkd~~lR~~AefeN~rK 67 (185)
T PRK14139 40 ELAEAEAKAAELQDSFLRAKAETENVRR 67 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455565554 355555556554
No 18
>PF15240 Pro-rich: Proline-rich
Probab=20.98 E-value=61 Score=27.05 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHH
Q 031349 64 AMALLAVTLFTTATAAASSSANAGVIDE 91 (161)
Q Consensus 64 al~~LAa~l~~tAa~a~a~~A~Agv~~d 91 (161)
||+||.+||++- .+|-..+-+|..|
T Consensus 2 LlVLLSvALLAL---SSAQ~~dEdv~~e 26 (179)
T PF15240_consen 2 LLVLLSVALLAL---SSAQSTDEDVSQE 26 (179)
T ss_pred hhHHHHHHHHHh---hhccccccccccc
Confidence 677777777643 4555566666543
No 19
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=20.48 E-value=1.5e+02 Score=23.55 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=10.6
Q ss_pred cchhhHHHHHHHhhh
Q 031349 84 ANAGVIDEYLERSKA 98 (161)
Q Consensus 84 A~Agv~~dyL~KSka 98 (161)
+...-+++++.=|..
T Consensus 34 ~~~~~~~~Fm~lS~~ 48 (168)
T PF12318_consen 34 ASSADLDDFMALSQL 48 (168)
T ss_pred CCcccHHHHHHHHHH
Confidence 344557899988864
Done!