Query 031349
Match_columns 161
No_of_seqs 31 out of 33
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 20:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_N PSAN, PSI-N, photosyste 100.0 4.4E-69 1.5E-73 430.1 -4.5 140 1-144 1-143 (170)
2 3lw5_N Photosystem I-N subunit 100.0 5.7E-36 1.9E-40 218.9 -3.8 58 87-144 1-58 (85)
3 3ux2_A MIP18 family protein FA 89.3 0.079 2.7E-06 40.3 0.3 15 97-111 101-115 (130)
4 2dii_A TFIIH basal transcripti 33.4 4.3 0.00015 27.8 -1.6 27 95-121 9-35 (61)
5 3tgu_G UQCRQ, mitochondrial ub 22.4 24 0.00081 24.7 0.6 18 136-153 5-22 (81)
6 2wkd_A ORF34P2; SSB, single-st 21.0 30 0.001 26.5 0.9 14 141-154 24-37 (119)
7 4h86_A Peroxiredoxin type-2; o 20.6 30 0.001 27.4 0.9 27 123-149 51-77 (199)
8 1ji8_A Dissimilatory siroheme- 20.4 13 0.00045 27.5 -1.1 56 91-152 36-92 (111)
9 3drq_C GP41 peptide epitope; H 17.8 64 0.0022 19.2 1.7 22 87-108 4-25 (35)
10 4g9e_A AHL-lactonase, alpha/be 17.3 46 0.0016 22.3 1.1 24 83-106 256-279 (279)
No 1
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=100.00 E-value=4.4e-69 Score=430.08 Aligned_cols=140 Identities=68% Similarity=1.042 Sum_probs=57.6
Q ss_pred CcccccchhhcceeeccCCCCcccccceeeccC---CcccccCccceeheeccccccccCCchhHHHHHHHHHHHHHhhh
Q 031349 1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTAT 77 (161)
Q Consensus 1 maamnssvlac~yaisg~~g~sel~~k~~sv~s---p~~~~~klPvira~~~~~~~~~r~~~gRRaal~~LAa~l~~tAa 77 (161)
||+|||||||||||||| ++|||+|++|||| |+++|+|||+||+||+.+++ ....++||++|++||++|+++|+
T Consensus 1 ma~mnssvlac~yaisg---~sel~~k~~s~~s~~~~~~~~~klp~~ka~~~~~~~-~~~~~~rRaAl~~LaA~l~~~aa 76 (170)
T 2wsc_N 1 MSAMNSTVLACNYARSG---CSDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVTE-SKSDQGRRSALVYLAATLFTAAA 76 (170)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccchhhhhhhhcC---chhhhhhhccCcccccccccccccCcceeeeeeccc-ccccchhHHHHHHHHHHHHHHhh
Confidence 99999999999999999 7999999999999 88999999999999987554 55568999999999999999998
Q ss_pred hhcccccchhhHHHHHHHhhhhhhhhhhhhhccccccchhheeeeecceecCCCccchhhhhhhcce
Q 031349 78 AAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKVF 144 (161)
Q Consensus 78 ~a~a~~A~Agv~~dyL~KSkaNKELNDKkRlaTs~aNfaRaytv~fG~ckfP~nf~gcqdLAk~k~~ 144 (161)
++++++|||||++|||+|||+|||||||||||||++||+|+|||+||+|+||+|||||||||+||+|
T Consensus 77 ~~~~~sA~Agv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V 143 (170)
T 2wsc_N 77 AASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKV 143 (170)
T ss_dssp ---------CCCCSCSCSSCSCSSSCCCSSCCSSSSSSCSCTTCCCSCSSCCSCCSCSSSCCCTTCT
T ss_pred cccccccccchHHHHHHHhhhhhhhhhhHhhhhcccchhheeeeecccccCCccccchHHHHhcCCC
Confidence 8899999999999999999999999999999999999999999999999999999999999999997
No 2
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=100.00 E-value=5.7e-36 Score=218.86 Aligned_cols=58 Identities=84% Similarity=1.335 Sum_probs=56.9
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhccccccchhheeeeecceecCCCccchhhhhhhcce
Q 031349 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKVF 144 (161)
Q Consensus 87 gv~~dyL~KSkaNKELNDKkRlaTs~aNfaRaytv~fG~ckfP~nf~gcqdLAk~k~~ 144 (161)
||++|||+||++|||||||||||||++||+|+|||+||+|+||+|||||||||++|+|
T Consensus 1 gv~~dllaks~aNKeLnDkKRlaTS~ANfaRs~TV~~G~C~FP~Nf~GCq~~a~~~~V 58 (85)
T 3lw5_N 1 GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKV 58 (85)
T ss_dssp CCCCSCSCSSCCCSTTCCCSSCCSSSSSSTTTSSCCCSCSSCCSCCSCSSSCCCTTBT
T ss_pred CcHHHHHHHhhhhhhhhhHHHhhhcccchhheeEeecccccCCccccchHHHHhcCCC
Confidence 6899999999999999999999999999999999999999999999999999999987
No 3
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=89.26 E-value=0.079 Score=40.25 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhhccc
Q 031349 97 KANKELNDQKRLATS 111 (161)
Q Consensus 97 kaNKELNDKkRlaTs 111 (161)
.-||.||||+|.|..
T Consensus 101 ~vnKQl~DKERvaAA 115 (130)
T 3ux2_A 101 DINKQINDKERVAAA 115 (130)
T ss_dssp CHHHHHHCHHHHHHH
T ss_pred HHHHhhhhHHHHHHH
Confidence 469999999999653
No 4
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=33.41 E-value=4.3 Score=27.75 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.6
Q ss_pred Hhhhhhhhhhhhhhccccccchhheee
Q 031349 95 RSKANKELNDQKRLATSGANFARAYTV 121 (161)
Q Consensus 95 KSkaNKELNDKkRlaTs~aNfaRaytv 121 (161)
|-|+||||..|+||..++.+..+-|+.
T Consensus 9 k~k~n~ELe~k~rlL~eN~~L~qLyk~ 35 (61)
T 2dii_A 9 KRKANKELEEKNRMLQEDPVLFQLYKD 35 (61)
T ss_dssp CCCSCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhCHHHHHHHHH
Confidence 568899999999999999998887764
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=22.43 E-value=24 Score=24.72 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=16.0
Q ss_pred hhhhhhcceeeeeeccce
Q 031349 136 QDLAKQKVFIRFKLYPFI 153 (161)
Q Consensus 136 qdLAk~k~~~~~~~~~~~ 153 (161)
.+|++||.++.|.|-||=
T Consensus 5 G~L~k~kgIitYsLSP~~ 22 (81)
T 3tgu_G 5 GNLARVRHIITYSLSPFE 22 (81)
T ss_dssp TTSCCCEEEEEEEECTTT
T ss_pred cccccccceEEEEeCccc
Confidence 389999999999999983
No 6
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=21.04 E-value=30 Score=26.45 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=11.5
Q ss_pred hcceeeeeecccee
Q 031349 141 QKVFIRFKLYPFIR 154 (161)
Q Consensus 141 ~k~~~~~~~~~~~~ 154 (161)
.||+++|++|||-.
T Consensus 24 ~KkviS~p~~~~e~ 37 (119)
T 2wkd_A 24 DKKIISVPLFEKEK 37 (119)
T ss_dssp CEEEEEEESSCCC-
T ss_pred ceeEEEEeeeeccc
Confidence 58999999999843
No 7
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=20.61 E-value=30 Score=27.42 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=22.6
Q ss_pred ecceecCCCccchhhhhhhcceeeeee
Q 031349 123 FGTCKFPENFTGCQDLAKQKVFIRFKL 149 (161)
Q Consensus 123 fG~ckfP~nf~gcqdLAk~k~~~~~~~ 149 (161)
.-.|.-|+.+.--++++|.|||+.|-+
T Consensus 51 ~~~c~~P~~v~ls~~~~k~KkVVLf~v 77 (199)
T 4h86_A 51 SESCKMPQTVEWSKLISENKKVIITGA 77 (199)
T ss_dssp SGGGTSCEEEEHHHHHHHCSEEEEEEC
T ss_pred cccCCCCeeeEHHHHhcCCCeEEEEEe
Confidence 456888988888899999999998853
No 8
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=20.41 E-value=13 Score=27.53 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=38.6
Q ss_pred HHHHHhhhhh-hhhhhhhhccccccchhheeeeecceecCCCccchhhhhhhcceeeeeeccc
Q 031349 91 EYLERSKANK-ELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKVFIRFKLYPF 152 (161)
Q Consensus 91 dyL~KSkaNK-ELNDKkRlaTs~aNfaRaytv~fG~ckfP~nf~gcqdLAk~k~~~~~~~~~~ 152 (161)
++|++..++= ||.|.-.= ==+|-|.|-.+||++ |..-.=|..+.+.-+. .|.|+|-
T Consensus 36 ~~lA~~~egI~eLTe~HW~---VI~flR~~Y~e~~~~--P~iR~l~K~~~~~~s~-Ly~LFP~ 92 (111)
T 1ji8_A 36 EWLARELEGIQKMTEEHWK---LVKYLREYWETFGTC--PPIKMVTKETGFSLEK-IYQLFPS 92 (111)
T ss_dssp HHHHHHHTCCSSCCHHHHH---HHHHHHHHTTTTSCC--CCSTTGGGGSCCCHHH-HHHHTTS
T ss_pred HHHHHhcCCchhcCHHHHH---HHHHHHHHHHHHCCC--CcHHHHHHHHHHHHHH-HHHHCCC
Confidence 4566444565 78877654 358999999999998 7666666666555544 7777763
No 9
>3drq_C GP41 peptide epitope; HIV-1, 2F5, NMAB, immune system; 2.00A {Homo sapiens} PDB: 3d0l_C 3drt_C 3egs_C
Probab=17.79 E-value=64 Score=19.17 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.6
Q ss_pred hhHHHHHHHhhhhhhhhhhhhh
Q 031349 87 GVIDEYLERSKANKELNDQKRL 108 (161)
Q Consensus 87 gv~~dyL~KSkaNKELNDKkRl 108 (161)
+.|-.+|++|..-.|.|.|+=|
T Consensus 4 ~~Iy~lLe~sq~qqekNek~Ll 25 (35)
T 3drq_C 4 ALFLGFLGAAGSKKXKNEQELL 25 (35)
T ss_pred hHHHHHHHHHHhhHHhhHHHHH
Confidence 5678899999999999988754
No 10
>4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A
Probab=17.31 E-value=46 Score=22.31 Aligned_cols=24 Identities=0% Similarity=0.115 Sum_probs=16.3
Q ss_pred ccchhhHHHHHHHhhhhhhhhhhh
Q 031349 83 SANAGVIDEYLERSKANKELNDQK 106 (161)
Q Consensus 83 ~A~Agv~~dyL~KSkaNKELNDKk 106 (161)
..-+..|.++|++.+.+++-|+|+
T Consensus 256 ~~~~~~i~~fl~~~~~~~~~~~~~ 279 (279)
T 4g9e_A 256 AEFDAYLARFIRDCTQLEHHHHHH 279 (279)
T ss_dssp HHHHHHHHHHHHHHHSSCCCC---
T ss_pred HHHHHHHHHHHHHhhhhhhhhccC
Confidence 344567889999988888877664
Done!