BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031351
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BNG|A Chain A, Structure Of An M.Tuberculosis Leh-Like Epoxide Hydrolase
 pdb|2BNG|B Chain B, Structure Of An M.Tuberculosis Leh-Like Epoxide Hydrolase
 pdb|2BNG|C Chain C, Structure Of An M.Tuberculosis Leh-Like Epoxide Hydrolase
          Length = 149

 Score = 33.5 bits (75), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 15  QNQEAI--VKALYKALANDEMENVAKYLASDLEY---WFHGPPTCQHMVRLLTGESSKAT 69
           +  EAI  V+A   AL N++ + V   L  DL Y    F      +    LL     +  
Sbjct: 13  ETTEAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGFSRIRGGRRTATLLRRXQGRVG 72

Query: 70  FKFEPRSVEVVGDCVIAEGWEG---AP---AYWVHVWTVNVKDGLITQFREYFNTWLTVK 123
           F+ +   +   G  V+ E  +     P    +WV      V DG IT +R+YF+ +   K
Sbjct: 73  FEVKIHRIGADGAAVLTERTDALIIGPLRVQFWV-CGVFEVDDGRITLWRDYFDVYDXFK 131

Query: 124 DL 125
            L
Sbjct: 132 GL 133


>pdb|3AEU|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEU|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
          Length = 525

 Score = 26.9 bits (58), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 88  GWEGAPAY---WVHVWTVNVKDGLITQFREYF 116
           G+EGA      WVH   + +++ L+T FRE F
Sbjct: 391 GFEGANVLFDTWVHPLVMGLEEHLLTMFREDF 422


>pdb|3AET|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AET|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
          Length = 525

 Score = 26.9 bits (58), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 88  GWEGAPAY---WVHVWTVNVKDGLITQFREYF 116
           G+EGA      WVH   + +++ L+T FRE F
Sbjct: 391 GFEGANVLFDTWVHPLVMGLEEHLLTMFREDF 422


>pdb|3AEK|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEK|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEQ|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEQ|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AER|B Chain B, Structure Of The Light-independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AER|D Chain D, Structure Of The Light-independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
          Length = 525

 Score = 26.9 bits (58), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 88  GWEGAPAY---WVHVWTVNVKDGLITQFREYF 116
           G+EGA      WVH   + +++ L+T FRE F
Sbjct: 391 GFEGANVLFDTWVHPLVMGLEEHLLTMFREDF 422


>pdb|3V0W|H Chain H, Crystal Structure Of Fab Wn1 222-5 In Complex With Lps
          Length = 219

 Score = 26.6 bits (57), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 112 FREYFNTWLTVKDLRPPRWEIRVRHERN 139
           F +Y+ TW+     + P W   +R++RN
Sbjct: 29  FSDYYMTWVRQAPGKAPEWLALIRNKRN 56


>pdb|3V0V|H Chain H, Fab Wn1 222-5 Unliganded
 pdb|3V0V|A Chain A, Fab Wn1 222-5 Unliganded
          Length = 220

 Score = 26.6 bits (57), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 112 FREYFNTWLTVKDLRPPRWEIRVRHERN 139
           F +Y+ TW+     + P W   +R++RN
Sbjct: 29  FSDYYMTWVRQAPGKAPEWLALIRNKRN 56


>pdb|2YUH|A Chain A, Solution Structure Of The C-Terminal Region In Human
           Tubulin Folding Cofactor C
          Length = 179

 Score = 26.6 bits (57), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 15/100 (15%)

Query: 54  CQHMVRLLTGESSKATFKFEPRSVEVVGDCVIAEGWEGAPAYWVHVWTVNVKDGLITQFR 113
           CQ + R+ + + ++   +   R++  V DC    G + AP  W +      KD   +   
Sbjct: 85  CQQL-RIHSTKDTRIFLQVTSRAI--VEDC---SGIQFAPYTWSYPEID--KDFESSGLD 136

Query: 114 EYFNTWLTV-------KDLRPPRWEIRVRHERNTLWQSQP 146
              N W  V       +D+  P W I    ERN  W S P
Sbjct: 137 RSKNNWNDVDDFNWLARDMASPNWSILPEEERNIQWDSGP 176


>pdb|2YNM|D Chain D, Structure Of The Adpxalf3-stabilized Transition State Of
           The Nitrogenase-like Dark-operative Protochlorophyllide
           Oxidoreductase Complex From Prochlorococcus Marinus With
           Its Substrate Protochlorophyllide A
          Length = 530

 Score = 26.2 bits (56), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 88  GWEGAPAY---WVHVWTVNVKDGLITQFREYF 116
           GWEGA      WVH   + +++ LI  FR  F
Sbjct: 407 GWEGANVIFDDWVHPLMMGLEEHLIGMFRHDF 438


>pdb|2VHU|A Chain A, P4 Protein From Bacteriophage Phi12 K241c Mutant In
           Complex With Adp And Mgcl
 pdb|2VHU|B Chain B, P4 Protein From Bacteriophage Phi12 K241c Mutant In
           Complex With Adp And Mgcl
 pdb|2VHU|C Chain C, P4 Protein From Bacteriophage Phi12 K241c Mutant In
           Complex With Adp And Mgcl
          Length = 331

 Score = 26.2 bits (56), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 8   VETSMAEQNQEAIVKALYKALANDEMENVAKYLASD 43
           + TS     ++A  KA+   + NDE+E+V + L S+
Sbjct: 296 IHTSKQSGGKQASGKAIQTVIKNDELESVLRRLTSN 331


>pdb|2VHC|A Chain A, P4 Protein From Bacteriophage Phi12 N234g Mutant In
           Complex With Ampcpp And Mn
 pdb|2VHC|B Chain B, P4 Protein From Bacteriophage Phi12 N234g Mutant In
           Complex With Ampcpp And Mn
 pdb|2VHC|C Chain C, P4 Protein From Bacteriophage Phi12 N234g Mutant In
           Complex With Ampcpp And Mn
          Length = 331

 Score = 26.2 bits (56), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 8   VETSMAEQNQEAIVKALYKALANDEMENVAKYLASD 43
           + TS     ++A  KA+   + NDE+E+V + L S+
Sbjct: 296 IHTSKQSGGKQASGKAIQTVIKNDELESVLRRLTSN 331


>pdb|1W44|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
 pdb|1W44|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
 pdb|1W44|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
 pdb|1W46|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
           And Mg
 pdb|1W46|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
           And Mg
 pdb|1W46|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
           And Mg
 pdb|1W47|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
           And Mn
 pdb|1W47|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
           And Mn
 pdb|1W47|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
           And Mn
 pdb|1W48|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
 pdb|1W48|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
 pdb|1W48|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
 pdb|1W49|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
           And Mg
 pdb|1W49|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
           And Mg
 pdb|1W49|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
           And Mg
 pdb|1W4A|A Chain A, P4 Protein From Phi12 In Complex With Ampcpp And Mn
 pdb|1W4A|B Chain B, P4 Protein From Phi12 In Complex With Ampcpp And Mn
 pdb|1W4A|C Chain C, P4 Protein From Phi12 In Complex With Ampcpp And Mn
 pdb|1W4B|A Chain A, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
           22c)
 pdb|1W4B|B Chain B, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
           22c)
 pdb|1W4B|C Chain C, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
           22c)
 pdb|1W4C|A Chain A, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|B Chain B, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|C Chain C, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|D Chain D, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|E Chain E, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|F Chain F, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|G Chain G, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|H Chain H, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|I Chain I, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|J Chain J, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|K Chain K, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|L Chain L, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|M Chain M, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|N Chain N, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|O Chain O, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|P Chain P, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|Q Chain Q, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|R Chain R, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|S Chain S, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|T Chain T, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|U Chain U, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|V Chain V, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|W Chain W, P4 Protein From Bacteriophage Phi12 Apo State
 pdb|1W4C|X Chain X, P4 Protein From Bacteriophage Phi12 Apo State
          Length = 331

 Score = 26.2 bits (56), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 8   VETSMAEQNQEAIVKALYKALANDEMENVAKYLASD 43
           + TS     ++A  KA+   + NDE+E+V + L S+
Sbjct: 296 IHTSKQSGGKQASGKAIQTVIKNDELESVLRRLTSN 331


>pdb|2VHJ|A Chain A, P4 Protein From Bacteriophage Phi12 S252a Mutant In
           Complex With Adp
 pdb|2VHJ|B Chain B, P4 Protein From Bacteriophage Phi12 S252a Mutant In
           Complex With Adp
 pdb|2VHJ|C Chain C, P4 Protein From Bacteriophage Phi12 S252a Mutant In
           Complex With Adp
 pdb|2VHQ|A Chain A, P4 Protein From Bacteriophage Phi12 S252a Mutant In
           Complex With Atp And Mg
 pdb|2VHQ|B Chain B, P4 Protein From Bacteriophage Phi12 S252a Mutant In
           Complex With Atp And Mg
 pdb|2VHQ|C Chain C, P4 Protein From Bacteriophage Phi12 S252a Mutant In
           Complex With Atp And Mg
          Length = 331

 Score = 26.2 bits (56), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 8   VETSMAEQNQEAIVKALYKALANDEMENVAKYLASD 43
           + TS     ++A  KA+   + NDE+E+V + L S+
Sbjct: 296 IHTSKQSGGKQASGKAIQTVIKNDELESVLRRLTSN 331


>pdb|2VHT|A Chain A, P4 Protein From Bacteriophage Phi12 R279a Mutant In
           Complex With Atp
 pdb|2VHT|B Chain B, P4 Protein From Bacteriophage Phi12 R279a Mutant In
           Complex With Atp
 pdb|2VHT|C Chain C, P4 Protein From Bacteriophage Phi12 R279a Mutant In
           Complex With Atp
          Length = 331

 Score = 26.2 bits (56), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 8   VETSMAEQNQEAIVKALYKALANDEMENVAKYLASD 43
           + TS     ++A  KA+   + NDE+E+V + L S+
Sbjct: 296 IHTSKQSGGKQASGKAIQTVIKNDELESVLRRLTSN 331


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,989,212
Number of Sequences: 62578
Number of extensions: 191982
Number of successful extensions: 582
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 16
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)