Query 031352
Match_columns 161
No_of_seqs 129 out of 778
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 12:53:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.1E-29 2.3E-34 195.1 20.4 149 7-161 46-199 (219)
2 PF03168 LEA_2: Late embryogen 99.4 6.5E-13 1.4E-17 89.5 7.3 84 56-147 1-84 (101)
3 smart00769 WHy Water Stress an 98.8 1.8E-07 3.8E-12 63.5 10.8 86 47-142 11-97 (100)
4 COG5608 LEA14-like dessication 98.1 0.00017 3.8E-09 52.0 12.7 105 26-143 31-136 (161)
5 PF07092 DUF1356: Protein of u 98.0 0.001 2.3E-08 51.6 16.1 85 23-109 96-181 (238)
6 PF12751 Vac7: Vacuolar segreg 95.5 0.042 9.1E-07 45.5 6.2 38 48-86 345-382 (387)
7 TIGR02588 conserved hypothetic 86.6 1.2 2.6E-05 31.2 3.8 54 4-65 8-63 (122)
8 PF09865 DUF2092: Predicted pe 68.5 52 0.0011 25.3 8.4 40 45-85 33-74 (214)
9 PF11322 DUF3124: Protein of u 63.5 49 0.0011 23.3 6.8 55 47-105 19-75 (125)
10 PF15012 DUF4519: Domain of un 57.3 13 0.00028 22.4 2.4 20 7-26 37-56 (56)
11 PLN03160 uncharacterized prote 57.1 87 0.0019 24.0 11.7 92 2-101 44-146 (219)
12 PRK10893 lipopolysaccharide ex 56.1 62 0.0013 24.3 6.6 34 7-40 9-53 (192)
13 PF12505 DUF3712: Protein of u 55.7 31 0.00068 23.8 4.7 27 49-76 98-124 (125)
14 PF08693 SKG6: Transmembrane a 52.6 5.5 0.00012 22.3 0.3 24 2-25 15-38 (40)
15 PF04478 Mid2: Mid2 like cell 52.0 9.8 0.00021 27.7 1.6 22 7-28 59-80 (154)
16 PRK06531 yajC preprotein trans 50.8 5.7 0.00012 27.5 0.2 13 15-27 12-24 (113)
17 PF10907 DUF2749: Protein of u 49.5 28 0.0006 21.6 3.1 16 11-26 13-28 (66)
18 PF11906 DUF3426: Protein of u 47.1 94 0.002 21.8 6.2 38 50-88 67-105 (149)
19 PF00927 Transglut_C: Transglu 46.3 84 0.0018 20.7 5.7 59 48-108 12-75 (107)
20 COG4698 Uncharacterized protei 46.3 13 0.00029 27.9 1.5 24 14-37 25-48 (197)
21 PF09604 Potass_KdpF: F subuni 45.2 4.4 9.6E-05 20.3 -0.7 22 6-27 3-24 (25)
22 PF09911 DUF2140: Uncharacteri 45.2 31 0.00067 25.9 3.4 25 4-28 7-31 (187)
23 PTZ00116 signal peptidase; Pro 44.9 58 0.0013 24.5 4.8 22 23-44 33-55 (185)
24 TIGR02414 pepN_proteo aminopep 39.5 1.8E+02 0.0039 27.3 8.1 56 27-83 4-60 (863)
25 PF06092 DUF943: Enterobacteri 39.1 16 0.00035 26.7 1.1 19 7-25 10-28 (157)
26 TIGR02115 potass_kdpF K+-trans 38.5 3.8 8.3E-05 20.7 -1.6 21 7-27 3-23 (26)
27 PF08113 CoxIIa: Cytochrome c 38.3 14 0.00031 19.7 0.5 15 7-21 10-24 (34)
28 PF05170 AsmA: AsmA family; I 35.3 3.1E+02 0.0066 24.0 8.6 65 68-141 468-533 (604)
29 PRK14759 potassium-transportin 34.1 8.9 0.00019 19.9 -0.7 21 7-27 8-28 (29)
30 PF15594 Imm30: Immunity prote 33.0 72 0.0016 22.0 3.6 51 32-82 19-70 (124)
31 PF10614 CsgF: Type VIII secre 32.3 39 0.00086 24.3 2.1 30 21-64 24-54 (142)
32 COG4736 CcoQ Cbb3-type cytochr 30.5 10 0.00022 23.2 -0.9 19 8-26 15-33 (60)
33 PF14283 DUF4366: Domain of un 29.6 58 0.0013 25.1 2.8 9 22-30 182-190 (218)
34 PF05399 EVI2A: Ectropic viral 29.5 29 0.00062 26.8 1.1 19 1-19 132-150 (227)
35 PF04573 SPC22: Signal peptida 29.0 1.4E+02 0.0031 22.1 4.8 11 23-33 32-42 (175)
36 PF06129 Chordopox_G3: Chordop 28.7 65 0.0014 22.1 2.6 30 53-82 51-86 (109)
37 PHA03049 IMV membrane protein; 28.3 13 0.00029 23.1 -0.7 22 3-24 3-24 (68)
38 PF13396 PLDc_N: Phospholipase 28.2 69 0.0015 17.8 2.4 19 8-26 28-46 (46)
39 PF09624 DUF2393: Protein of u 27.4 1.5E+02 0.0031 21.0 4.5 50 26-85 46-95 (149)
40 PF13473 Cupredoxin_1: Cupredo 27.1 19 0.00041 23.8 -0.2 36 30-65 20-55 (104)
41 PF15145 DUF4577: Domain of un 27.0 31 0.00067 23.8 0.8 23 3-25 66-88 (128)
42 PF05545 FixQ: Cbb3-type cytoc 26.3 14 0.0003 21.3 -0.9 17 10-26 17-33 (49)
43 PRK15188 fimbrial chaperone pr 26.2 90 0.0019 24.2 3.4 34 56-95 165-198 (228)
44 PRK07718 fliL flagellar basal 26.2 65 0.0014 22.9 2.4 14 69-82 63-76 (142)
45 PRK12785 fliL flagellar basal 24.7 2.8E+02 0.0061 20.2 6.8 16 68-83 86-101 (166)
46 PRK13150 cytochrome c-type bio 24.6 2.9E+02 0.0063 20.3 6.0 29 53-81 78-106 (159)
47 PF06143 Baculo_11_kDa: Baculo 24.6 49 0.0011 21.6 1.4 13 1-13 40-52 (84)
48 PF14828 Amnionless: Amnionles 23.9 52 0.0011 28.1 1.8 27 4-30 343-369 (437)
49 COG1580 FliL Flagellar basal b 23.8 2.2E+02 0.0048 20.8 4.8 17 7-23 26-42 (159)
50 PF14155 DUF4307: Domain of un 23.7 2.4E+02 0.0053 19.1 8.9 75 7-92 10-86 (112)
51 PF06024 DUF912: Nucleopolyhed 23.6 1.2E+02 0.0026 20.3 3.2 18 7-24 70-88 (101)
52 PF12202 OSR1_C: Oxidative-str 23.5 1.1E+02 0.0023 16.9 2.4 19 53-72 1-19 (38)
53 PF11770 GAPT: GRB2-binding ad 23.4 93 0.002 22.7 2.7 20 7-26 18-37 (158)
54 COG1589 FtsQ Cell division sep 22.9 64 0.0014 25.4 2.1 33 7-39 37-69 (269)
55 PRK05529 cell division protein 22.9 79 0.0017 24.8 2.6 14 27-40 58-71 (255)
56 TIGR00996 Mtu_fam_mce virulenc 22.6 2.7E+02 0.0059 21.8 5.6 13 76-88 50-62 (291)
57 PRK07021 fliL flagellar basal 22.6 90 0.0019 22.6 2.6 16 68-83 78-93 (162)
58 PF05961 Chordopox_A13L: Chord 22.1 49 0.0011 20.7 1.0 22 3-24 3-24 (68)
59 CHL00020 psbN photosystem II p 21.3 99 0.0021 17.5 2.0 20 6-25 10-29 (43)
60 KOG3950 Gamma/delta sarcoglyca 21.2 1.3E+02 0.0028 23.9 3.3 22 48-69 105-126 (292)
61 PRK11385 putativi pili assembl 20.9 1.2E+02 0.0026 23.6 3.2 35 56-95 168-202 (236)
62 COG0316 sufA Fe-S cluster asse 20.9 55 0.0012 22.5 1.1 12 56-67 90-101 (110)
63 cd01324 cbb3_Oxidase_CcoQ Cyto 20.7 24 0.00053 20.4 -0.6 20 7-26 15-34 (48)
64 COG5294 Uncharacterized protei 20.7 2.5E+02 0.0055 19.3 4.3 14 52-65 53-66 (113)
65 COG3121 FimC P pilus assembly 20.6 1.7E+02 0.0037 22.6 4.0 37 56-96 166-204 (235)
66 PF05454 DAG1: Dystroglycan (D 20.3 34 0.00074 27.6 0.0 12 9-20 159-170 (290)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=195.10 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=121.1
Q ss_pred HHHHHHHHHheeeeEEEecCCcEEEEeeEEecceecCC---CCCceEEEEEEEEEEeCCCceeEEEEeceEEEEEECCEE
Q 031352 7 TPIIALGLIFLILWLGLRPHAPKFHIHEFSVPGLSLGQ---PNGFQNASVSFNVTARNPNRRVRILYESLDGSVYYRDYQ 83 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~rP~~P~~~V~~~~v~~~~~~~---~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~ 83 (161)
++++++++++.++|++||||+|+|+|+++++++|+++. .+..+|++++++++++|||+ .+++|+++++.++|+|+.
T Consensus 46 ~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v~Y~g~~ 124 (219)
T PLN03160 46 TLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTIYYGGTV 124 (219)
T ss_pred HHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEEEECCEE
Confidence 33444667777888899999999999999999998864 24577888999999999998 899999999999999999
Q ss_pred EecccccCceeeCCCCeeEEEEEEEeeeeeeccChhhHHHHHhhhccCeEEEEEEEEEEEEEEEEEEee--ecCCCcccC
Q 031352 84 VGSVLLLNSFKQDPKNTTTLQYEVSGAMMMSTVSNQSWAEFTNDRERGTVIFRLQFKSVIQYQKVHVGF--KAPSDACQL 161 (161)
Q Consensus 84 lg~~~~~p~f~q~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~d~~~g~v~l~v~v~~~vr~k~~~~~~--~~~~~~c~~ 161 (161)
+|.+. +|+|+|++++++.+.+++..... .+.+ ..+|.+|.++|.++|+.+.+.+.+.|++.+.. ..+...|.+
T Consensus 125 vG~a~-~p~g~~~ar~T~~l~~tv~~~~~--~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v 199 (219)
T PLN03160 125 VGEAR-TPPGKAKARRTMRMNVTVDIIPD--KILS--VPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTM 199 (219)
T ss_pred EEEEE-cCCcccCCCCeEEEEEEEEEEec--eecc--chhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEE
Confidence 99999 99999999999999998776554 3333 25799999999999998766666666665422 244677753
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.42 E-value=6.5e-13 Score=89.45 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=66.5
Q ss_pred EEEEeCCCceeEEEEeceEEEEEECCEEEecccccCceeeCCCCeeEEEEEEEeeeeeeccChhhHHHHHhhhccCeEEE
Q 031352 56 NVTARNPNRRVRILYESLDGSVYYRDYQVGSVLLLNSFKQDPKNTTTLQYEVSGAMMMSTVSNQSWAEFTNDRERGTVIF 135 (161)
Q Consensus 56 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~d~~~g~v~l 135 (161)
+++++|||. ++++|++++++++|+|+.+|.+...|+|.|++++++.+.+.+..+.. .+ .+.+.++. +|..++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~--~l----~~~l~~~~-~~~~~~ 72 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYS--DL----PRLLKDLL-AGRVPF 72 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHH--HH----HHHHHHHH-HTTSCE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHH--HH----HHHHHhhh-ccccce
Confidence 589999998 99999999999999999999444399999999999999998777654 33 55667777 667777
Q ss_pred EEEEEEEEEEEE
Q 031352 136 RLQFKSVIQYQK 147 (161)
Q Consensus 136 ~v~v~~~vr~k~ 147 (161)
++.++.+.++++
T Consensus 73 ~v~~~~~g~~~v 84 (101)
T PF03168_consen 73 DVTYRIRGTFKV 84 (101)
T ss_dssp EEEEEEEEEEE-
T ss_pred EEEEEEEEEEEE
Confidence 777777777774
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.77 E-value=1.8e-07 Score=63.45 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=65.7
Q ss_pred CceEEEEEEEEEEeCCCceeEEEEeceEEEEEECCEEEecccccC-ceeeCCCCeeEEEEEEEeeeeeeccChhhHHHHH
Q 031352 47 GFQNASVSFNVTARNPNRRVRILYESLDGSVYYRDYQVGSVLLLN-SFKQDPKNTTTLQYEVSGAMMMSTVSNQSWAEFT 125 (161)
Q Consensus 47 ~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p-~f~q~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~ 125 (161)
+..+.++.++++++|||. .++.|++++..++|+|..+|++. .+ +...++++++.+++.++.+ . .. ...+.
T Consensus 11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~-~~~~~~ipa~~~~~v~v~~~~~-~--~~----~~~~~ 81 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGE-IPDSGTLPGNGRTVLDVPVTVN-L--FL----AEALI 81 (100)
T ss_pred cceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEE-cCCCcEECCCCcEEEEEEEEee-h--hH----hHHHH
Confidence 467899999999999997 79999999999999999999999 65 7899999999998888763 2 22 33444
Q ss_pred hhhccCeEEEEEEEEEE
Q 031352 126 NDRERGTVIFRLQFKSV 142 (161)
Q Consensus 126 ~d~~~g~v~l~v~v~~~ 142 (161)
.++.+|. ..+++++++
T Consensus 82 ~~l~~~~-~~~y~l~g~ 97 (100)
T smart00769 82 WHIANGE-EIPYRLDGK 97 (100)
T ss_pred HhhccCC-CccEEEEEE
Confidence 5555553 233334444
No 4
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=98.11 E-value=0.00017 Score=52.01 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=77.5
Q ss_pred CCcEEEEeeEEecceecCCCCCceEEEEEEEEEEeCCCceeEEEEeceEEEEEECCEEEecccccCceeeCCCCeeEEEE
Q 031352 26 HAPKFHIHEFSVPGLSLGQPNGFQNASVSFNVTARNPNRRVRILYESLDGSVYYRDYQVGSVLLLNSFKQDPKNTTTLQY 105 (161)
Q Consensus 26 ~~P~~~V~~~~v~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~~~~v~~ 105 (161)
++|...--.+..-.. . ....++-.++.++|||. +++--.+++..++-+|.++|.+....++..+|++...+++
T Consensus 31 ~~p~ve~~ka~wGkv--t----~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv 103 (161)
T COG5608 31 KKPGVESMKAKWGKV--T----NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDV 103 (161)
T ss_pred CCCCceEEEEEEEEE--e----ccceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEE
Confidence 557666666666554 2 23478889999999997 7999999999999999999998867789999999999999
Q ss_pred EEEeeeeeeccChhhHHHHHhhhccCeE-EEEEEEEEEE
Q 031352 106 EVSGAMMMSTVSNQSWAEFTNDRERGTV-IFRLQFKSVI 143 (161)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~l~~d~~~g~v-~l~v~v~~~v 143 (161)
.+..+.. .+. +-+...+++|.- +..+++.+.+
T Consensus 104 ~l~~d~~--~~k----e~w~~hi~ngErs~Ir~~i~~~v 136 (161)
T COG5608 104 PLRLDNS--KIK----EWWVTHIENGERSTIRVRIKGVV 136 (161)
T ss_pred EEEEehH--HHH----HHHHHHhhccCcccEEEEEEEEE
Confidence 8887654 333 344455666653 4544444433
No 5
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.00 E-value=0.001 Score=51.56 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=64.6
Q ss_pred EecCCcEEEEeeEEecceecCCCCCceEEEEEEEEEEeCCCceeEEEEeceEEEEEECCEEEecccccCc-eeeCCCCee
Q 031352 23 LRPHAPKFHIHEFSVPGLSLGQPNGFQNASVSFNVTARNPNRRVRILYESLDGSVYYRDYQVGSVLLLNS-FKQDPKNTT 101 (161)
Q Consensus 23 ~rP~~P~~~V~~~~v~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~-f~q~~~~~~ 101 (161)
+-||.-.++-.++......++...+.+..++.-.+.++|||- ..+.-..+.+++.|....+|... ... ...+|++.+
T Consensus 96 LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~VVG~~~-~~~~~~I~Prs~~ 173 (238)
T PF07092_consen 96 LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTVVGKGK-NSNITVIGPRSSK 173 (238)
T ss_pred EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeEEeeeE-ecceEEecccCCc
Confidence 448766666555555555556666778899999999999995 89999999999999999999877 443 356778777
Q ss_pred EEEEEEEe
Q 031352 102 TLQYEVSG 109 (161)
Q Consensus 102 ~v~~~~~~ 109 (161)
.+..++..
T Consensus 174 q~~~tV~t 181 (238)
T PF07092_consen 174 QVNYTVKT 181 (238)
T ss_pred eEEEEeeE
Confidence 77776554
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=95.54 E-value=0.042 Score=45.52 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=31.4
Q ss_pred ceEEEEEEEEEEeCCCceeEEEEeceEEEEEECCEEEec
Q 031352 48 FQNASVSFNVTARNPNRRVRILYESLDGSVYYRDYQVGS 86 (161)
Q Consensus 48 ~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~ 86 (161)
.-..-|++++.+.|||. +.|..++.++.++=+-..++.
T Consensus 345 ~qELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 345 EQELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred cceEEEeeEEEEECCCe-EEEEeccceeeeEecCCccCc
Confidence 45688999999999997 899999999999866555554
No 7
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=86.57 E-value=1.2 Score=31.16 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHheeeeEE--EecCCcEEEEeeEEecceecCCCCCceEEEEEEEEEEeCCCce
Q 031352 4 IFLTPIIALGLIFLILWLG--LRPHAPKFHIHEFSVPGLSLGQPNGFQNASVSFNVTARNPNRR 65 (161)
Q Consensus 4 ~~~~~i~~~~~~~li~~lv--~rP~~P~~~V~~~~v~~~~~~~~~~~l~~~l~~~l~~~NPN~~ 65 (161)
+.+..+++++++.++.|.. -++++|.+++......+- ....+-+-++++|-..+
T Consensus 8 ~~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~--------~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 8 FGISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM--------QTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE--------eCCEEEEEEEEEeCCCc
Confidence 3456667777888888854 456889998887766543 22446677788886653
No 8
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=68.51 E-value=52 Score=25.30 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCceEEEEEEEEEEeCCCceeEEEEec--eEEEEEECCEEEe
Q 031352 45 PNGFQNASVSFNVTARNPNRRVRILYES--LDGSVYYRDYQVG 85 (161)
Q Consensus 45 ~~~~l~~~l~~~l~~~NPN~~~~i~Y~~--~~~~v~Y~g~~lg 85 (161)
++..+...-+.++.++=||+ +.+.+.+ -+..++|+|..+.
T Consensus 33 ~gqklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 33 DGQKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred CCceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCEEE
Confidence 45677888899999999996 8899854 5678999997655
No 9
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=63.54 E-value=49 Score=23.29 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=35.4
Q ss_pred CceEEEEEEEEEEeCCCceeEEEEeceEEEEEEC--CEEEecccccCceeeCCCCeeEEEE
Q 031352 47 GFQNASVSFNVTARNPNRRVRILYESLDGSVYYR--DYQVGSVLLLNSFKQDPKNTTTLQY 105 (161)
Q Consensus 47 ~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~--g~~lg~~~~~p~f~q~~~~~~~v~~ 105 (161)
.....+|+.+|++||.+.+-.++-...+ +|+ |+.+-+-- -.|...+|-.+..+-+
T Consensus 19 ~~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl-~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 19 KHRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYL-DKPIYLKPLATTEFVV 75 (125)
T ss_pred CCceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhc-CCCeEcCCCceEEEEE
Confidence 3456889999999998877666665544 453 44444432 3466777777665544
No 10
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=57.31 E-value=13 Score=22.38 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=13.5
Q ss_pred HHHHHHHHHheeeeEEEecC
Q 031352 7 TPIIALGLIFLILWLGLRPH 26 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~rP~ 26 (161)
++..++.++++++|+..||+
T Consensus 37 ~l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 37 TLAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHHHhheeEEeccCC
Confidence 34445556677888888885
No 11
>PLN03160 uncharacterized protein; Provisional
Probab=57.11 E-value=87 Score=24.03 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=48.7
Q ss_pred hhhhHHHHHHHHHHheeeeEEEecC--CcEEEEeeEEecc-------eecC--CCCCceEEEEEEEEEEeCCCceeEEEE
Q 031352 2 CAIFLTPIIALGLIFLILWLGLRPH--APKFHIHEFSVPG-------LSLG--QPNGFQNASVSFNVTARNPNRRVRILY 70 (161)
Q Consensus 2 c~~~~~~i~~~~~~~li~~lv~rP~--~P~~~V~~~~v~~-------~~~~--~~~~~l~~~l~~~l~~~NPN~~~~i~Y 70 (161)
|+++++++++++++++.++=-=+|+ .-.++++++.++. ++++ ..=+.-|.|. +.+.-. |....++|
T Consensus 44 ~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~--~~~~~v~Y 120 (219)
T PLN03160 44 TATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYS--NTTTTIYY 120 (219)
T ss_pred HHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEc--CeEEEEEE
Confidence 5677877777777777777566663 4556666655432 2111 1000112333 344444 34578899
Q ss_pred eceEEEEEECCEEEecccccCceeeCCCCee
Q 031352 71 ESLDGSVYYRDYQVGSVLLLNSFKQDPKNTT 101 (161)
Q Consensus 71 ~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~~~ 101 (161)
++..+.- ..+..+. .|+..+...+.+
T Consensus 121 ~g~~vG~----a~~p~g~-~~ar~T~~l~~t 146 (219)
T PLN03160 121 GGTVVGE----ARTPPGK-AKARRTMRMNVT 146 (219)
T ss_pred CCEEEEE----EEcCCcc-cCCCCeEEEEEE
Confidence 8865433 2344444 555555555544
No 12
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=56.10 E-value=62 Score=24.33 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=23.9
Q ss_pred HHHHHHHHHheeeeEEE-----------ecCCcEEEEeeEEecce
Q 031352 7 TPIIALGLIFLILWLGL-----------RPHAPKFHIHEFSVPGL 40 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~-----------rP~~P~~~V~~~~v~~~ 40 (161)
.+++.+++.+++.|... .++.|-|..++++...+
T Consensus 9 ~~il~~~~l~l~~W~l~~~~~~~~~~~~~~~~Pdy~~~~~~~~~y 53 (192)
T PRK10893 9 IILLALIALVLIGWNLADKDEDTAPVVVNNNDPTYQSQHTDTVVY 53 (192)
T ss_pred HHHHHHHHHHHHHhhccCCccccccccCCCCCCCEEEeccEEEEE
Confidence 44555555566666432 36789999999998888
No 13
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=55.72 E-value=31 Score=23.78 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=20.1
Q ss_pred eEEEEEEEEEEeCCCceeEEEEeceEEE
Q 031352 49 QNASVSFNVTARNPNRRVRILYESLDGS 76 (161)
Q Consensus 49 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~ 76 (161)
-..++..++.+.||.. +.+..+.+.+.
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 3567788889999986 77777766554
No 14
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=52.60 E-value=5.5 Score=22.30 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHHHheeeeEEEec
Q 031352 2 CAIFLTPIIALGLIFLILWLGLRP 25 (161)
Q Consensus 2 c~~~~~~i~~~~~~~li~~lv~rP 25 (161)
|++.+-+.+++.++++++|+++|-
T Consensus 15 ~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 15 VGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEechHHHHHHHHHHhheEEec
Confidence 334443444444444455555653
No 15
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=52.00 E-value=9.8 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=15.6
Q ss_pred HHHHHHHHHheeeeEEEecCCc
Q 031352 7 TPIIALGLIFLILWLGLRPHAP 28 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~rP~~P 28 (161)
...++++++++++|+..|++.-
T Consensus 59 Gg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 59 GGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred cHHHHHHHHHhheeEEEecccC
Confidence 3455667777888888888753
No 16
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=50.77 E-value=5.7 Score=27.48 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=8.0
Q ss_pred HheeeeEEEecCC
Q 031352 15 IFLILWLGLRPHA 27 (161)
Q Consensus 15 ~~li~~lv~rP~~ 27 (161)
++.++|+.+||+.
T Consensus 12 ~~~i~yf~iRPQk 24 (113)
T PRK06531 12 MLGLIFFMQRQQK 24 (113)
T ss_pred HHHHHHheechHH
Confidence 3334566799954
No 17
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=49.47 E-value=28 Score=21.61 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=11.8
Q ss_pred HHHHHheeeeEEEecC
Q 031352 11 ALGLIFLILWLGLRPH 26 (161)
Q Consensus 11 ~~~~~~li~~lv~rP~ 26 (161)
+.+.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3445677888899998
No 18
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=47.09 E-value=94 Score=21.84 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=30.5
Q ss_pred EEEEEEEEEEeCCCceeEEEEeceEEEEE-ECCEEEeccc
Q 031352 50 NASVSFNVTARNPNRRVRILYESLDGSVY-YRDYQVGSVL 88 (161)
Q Consensus 50 ~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~-Y~g~~lg~~~ 88 (161)
.-.+.++.+++|... ....|-.+++++. -+|+.+++-.
T Consensus 67 ~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~ 105 (149)
T PF11906_consen 67 PGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRV 105 (149)
T ss_pred CCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEE
Confidence 467788899999887 5888888998888 6787777655
No 19
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=46.29 E-value=84 Score=20.71 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=33.8
Q ss_pred ceEEEEEEEEEEeCCCceeEEEEec---eEEEEEECCEEEe--cccccCceeeCCCCeeEEEEEEE
Q 031352 48 FQNASVSFNVTARNPNRRVRILYES---LDGSVYYRDYQVG--SVLLLNSFKQDPKNTTTLQYEVS 108 (161)
Q Consensus 48 ~l~~~l~~~l~~~NPN~~~~i~Y~~---~~~~v~Y~g~~lg--~~~~~p~f~q~~~~~~~v~~~~~ 108 (161)
.+.-++++.++++||... .++-=. ....+.|.|.... ... ......+|+++..+...+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~-~l~~v~~~l~~~~v~ytG~~~~~~~~~-~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSE-PLRNVSLNLCAFTVEYTGLTRDQFKKE-KFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS--EECEEEEEEEEEEECTTTEEEEEEEE-EEEEEE-TTEEEEEEEEE-
T ss_pred cCCCCEEEEEEEEeCCcC-ccccceeEEEEEEEEECCcccccEeEE-EcceeeCCCCEEEEEEEEE
Confidence 355688999999999763 222111 3346688886532 222 3445677787777777654
No 20
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.26 E-value=13 Score=27.87 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=16.9
Q ss_pred HHheeeeEEEecCCcEEEEeeEEe
Q 031352 14 LIFLILWLGLRPHAPKFHIHEFSV 37 (161)
Q Consensus 14 ~~~li~~lv~rP~~P~~~V~~~~v 37 (161)
++++++-+++.|+.|..++.+++=
T Consensus 25 ~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 25 LAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHhheeeccCCCCCchhhccCc
Confidence 336666678899997777776654
No 21
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=45.21 E-value=4.4 Score=20.27 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=13.4
Q ss_pred HHHHHHHHHHheeeeEEEecCC
Q 031352 6 LTPIIALGLIFLILWLGLRPHA 27 (161)
Q Consensus 6 ~~~i~~~~~~~li~~lv~rP~~ 27 (161)
+..++.+++.+..+|-.+||++
T Consensus 3 l~~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 3 LGGIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 3455556666666666678863
No 22
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=45.21 E-value=31 Score=25.90 Aligned_cols=25 Identities=12% Similarity=0.493 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHheeeeEEEecCCc
Q 031352 4 IFLTPIIALGLIFLILWLGLRPHAP 28 (161)
Q Consensus 4 ~~~~~i~~~~~~~li~~lv~rP~~P 28 (161)
+++++.+++++++.+++.+++|+.|
T Consensus 7 F~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 7 FLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHhheeeEEEccCCC
Confidence 4445555666667777788999866
No 23
>PTZ00116 signal peptidase; Provisional
Probab=44.93 E-value=58 Score=24.54 Aligned_cols=22 Identities=23% Similarity=0.088 Sum_probs=12.6
Q ss_pred Eec-CCcEEEEeeEEecceecCC
Q 031352 23 LRP-HAPKFHIHEFSVPGLSLGQ 44 (161)
Q Consensus 23 ~rP-~~P~~~V~~~~v~~~~~~~ 44 (161)
++| .+|..+++-.++.++.++.
T Consensus 33 ~~~~~~~~~~i~v~~V~~~~~~~ 55 (185)
T PTZ00116 33 LFDEKEMSTNIKVKSVKRLVYNR 55 (185)
T ss_pred ccCCCCceeeEEEeecccccccC
Confidence 344 4565666655566775443
No 24
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=39.49 E-value=1.8e+02 Score=27.25 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=38.4
Q ss_pred CcEEEEeeEEecceecCCCCCceEEEEEEEEEEeCCCceeEEEEeceEE-EEEECCEE
Q 031352 27 APKFHIHEFSVPGLSLGQPNGFQNASVSFNVTARNPNRRVRILYESLDG-SVYYRDYQ 83 (161)
Q Consensus 27 ~P~~~V~~~~v~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~-~v~Y~g~~ 83 (161)
+|.|.|.+..+ .|.++.....++..+.++.+..+|...+.+...++++ .+..+|..
T Consensus 4 ~~~~~v~~~~L-~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~ 60 (863)
T TIGR02414 4 PPPFLIEKTHL-DFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKP 60 (863)
T ss_pred CCCceEEEEEE-EEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEe
Confidence 48899999888 4766666667888888887776665556666665554 35555654
No 25
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=39.13 E-value=16 Score=26.75 Aligned_cols=19 Identities=42% Similarity=0.871 Sum_probs=12.5
Q ss_pred HHHHHHHHHheeeeEEEec
Q 031352 7 TPIIALGLIFLILWLGLRP 25 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~rP 25 (161)
+.++++++++.++|+.+||
T Consensus 10 ~~l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 10 IALFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHHHhhhhccCC
Confidence 3344445444888889999
No 26
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=38.51 E-value=3.8 Score=20.71 Aligned_cols=21 Identities=29% Similarity=0.611 Sum_probs=13.1
Q ss_pred HHHHHHHHHheeeeEEEecCC
Q 031352 7 TPIIALGLIFLILWLGLRPHA 27 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~rP~~ 27 (161)
..++.+++.+..+|-.+||++
T Consensus 3 ~~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 3 LLVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHHHhCHHh
Confidence 455556666666666678853
No 27
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=38.28 E-value=14 Score=19.74 Aligned_cols=15 Identities=20% Similarity=0.687 Sum_probs=10.7
Q ss_pred HHHHHHHHHheeeeE
Q 031352 7 TPIIALGLIFLILWL 21 (161)
Q Consensus 7 ~~i~~~~~~~li~~l 21 (161)
..+.+++++++++|+
T Consensus 10 ~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 10 GVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHH
Confidence 456667778888884
No 28
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=35.27 E-value=3.1e+02 Score=24.04 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=31.1
Q ss_pred EEEeceEEEEEECCEEEecccccCceeeCCCCeeEEEEEEEeeeeeeccChhhHHHHH-hhhccCeEEEEEEEEE
Q 031352 68 ILYESLDGSVYYRDYQVGSVLLLNSFKQDPKNTTTLQYEVSGAMMMSTVSNQSWAEFT-NDRERGTVIFRLQFKS 141 (161)
Q Consensus 68 i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~-~d~~~g~v~l~v~v~~ 141 (161)
+.-+++.+.+ |+|..=+.+. +.. ......++....++++ ++.+- ...+. .+.-.|...+++.+++
T Consensus 468 l~l~~l~~~l-~~G~~~~~~~-ld~----~~~~~~~~~~~~~~~v--~l~~L-l~~~~~~~~l~G~~~~~~~l~g 533 (604)
T PF05170_consen 468 LTLDPLSAKL-YGGSLSGSAS-LDA----RQDPPQYSLNLNLRGV--QLQPL-LQDLALPDPLSGTGDLNLDLTG 533 (604)
T ss_pred EEEeeeeEec-CCcEEEEEEE-Eec----cCCCccEEEeeeeCCc--chHHH-HhhhccccCceEEEEEEEEEEe
Confidence 3344555555 7777666655 431 1222345555566666 44332 12222 2334566665555544
No 29
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=34.11 E-value=8.9 Score=19.86 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=12.4
Q ss_pred HHHHHHHHHheeeeEEEecCC
Q 031352 7 TPIIALGLIFLILWLGLRPHA 27 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~rP~~ 27 (161)
..++.+++.+..++-.+||++
T Consensus 8 ~~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 8 AGAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHHhCccc
Confidence 444555555555555678853
No 30
>PF15594 Imm30: Immunity protein 30
Probab=32.97 E-value=72 Score=21.96 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=32.3
Q ss_pred EeeEEecceecCCCCCceEEEEEEEEEEeCCCcee-EEEEeceEEEEEECCE
Q 031352 32 IHEFSVPGLSLGQPNGFQNASVSFNVTARNPNRRV-RILYESLDGSVYYRDY 82 (161)
Q Consensus 32 V~~~~v~~~~~~~~~~~l~~~l~~~l~~~NPN~~~-~i~Y~~~~~~v~Y~g~ 82 (161)
+.++.+.++.+.-..+.++..+...-.-.||.+|. .-.|+...+.+.+.|.
T Consensus 19 f~d~ei~~v~l~r~~~~l~i~~~~~~~p~~~P~kW~~~~~n~~~v~l~F~~V 70 (124)
T PF15594_consen 19 FHDAEIFSVLLDRDGPRLSIHFDTKEFPDNPPKKWSPNKFNAVYVTLSFFDV 70 (124)
T ss_pred cceeEEEEEEEEcCCCEEEEEEEECCCCCCCCceeccCCCeEEEEEEEEEEe
Confidence 34555555555543556777776666667766554 5567777788887764
No 31
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=32.32 E-value=39 Score=24.32 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=18.1
Q ss_pred EEEecCCcEEEEeeEEecceecCCCCCceEEEEEEE-EEEeCCCc
Q 031352 21 LGLRPHAPKFHIHEFSVPGLSLGQPNGFQNASVSFN-VTARNPNR 64 (161)
Q Consensus 21 lv~rP~~P~~~V~~~~v~~~~~~~~~~~l~~~l~~~-l~~~NPN~ 64 (161)
|+|+|-.|.| .+..+|+.|-+. -.++|..+
T Consensus 24 LVY~PvNPsF--------------GGnplNgs~LL~~A~AQN~~~ 54 (142)
T PF10614_consen 24 LVYTPVNPSF--------------GGNPLNGSWLLSSAQAQNDFK 54 (142)
T ss_pred eEeeccCCCC--------------CCCcccHHHHhhhhhhcCCcC
Confidence 8999987754 234555555543 45566544
No 32
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.49 E-value=10 Score=23.16 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=11.3
Q ss_pred HHHHHHHHheeeeEEEecC
Q 031352 8 PIIALGLIFLILWLGLRPH 26 (161)
Q Consensus 8 ~i~~~~~~~li~~lv~rP~ 26 (161)
++.+..+.+.++|.+|||+
T Consensus 15 t~~~~l~fiavi~~ayr~~ 33 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3344444555666788885
No 33
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=29.59 E-value=58 Score=25.14 Aligned_cols=9 Identities=11% Similarity=0.109 Sum_probs=6.0
Q ss_pred EEecCCcEE
Q 031352 22 GLRPHAPKF 30 (161)
Q Consensus 22 v~rP~~P~~ 30 (161)
++||+...-
T Consensus 182 ~~K~K~~~~ 190 (218)
T PF14283_consen 182 FYKPKQEEK 190 (218)
T ss_pred Eeccccccc
Confidence 778876543
No 34
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.55 E-value=29 Score=26.75 Aligned_cols=19 Identities=11% Similarity=0.509 Sum_probs=10.5
Q ss_pred ChhhhHHHHHHHHHHheee
Q 031352 1 MCAIFLTPIIALGLIFLIL 19 (161)
Q Consensus 1 ~c~~~~~~i~~~~~~~li~ 19 (161)
+|.|+++++++++.++|+.
T Consensus 132 IClIIIAVLfLICT~LfLS 150 (227)
T PF05399_consen 132 ICLIIIAVLFLICTLLFLS 150 (227)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666665554443
No 35
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=28.98 E-value=1.4e+02 Score=22.12 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=5.8
Q ss_pred EecCCcEEEEe
Q 031352 23 LRPHAPKFHIH 33 (161)
Q Consensus 23 ~rP~~P~~~V~ 33 (161)
+.|..|..++.
T Consensus 32 ~~~~~~~~~i~ 42 (175)
T PF04573_consen 32 FHPPSPSVSIS 42 (175)
T ss_pred ccCCCCceEEE
Confidence 55555555544
No 36
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=28.67 E-value=65 Score=22.12 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=18.3
Q ss_pred EEEEEEEeCCCc----eeEEEEece--EEEEEECCE
Q 031352 53 VSFNVTARNPNR----RVRILYESL--DGSVYYRDY 82 (161)
Q Consensus 53 l~~~l~~~NPN~----~~~i~Y~~~--~~~v~Y~g~ 82 (161)
..-++-+.|||+ .+.++|+.. .+.+.|+|.
T Consensus 51 ~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~~ 86 (109)
T PF06129_consen 51 LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKNK 86 (109)
T ss_pred ceeeEEecCCCcccccceEEEEccCCCeEEEEECCc
Confidence 334556777773 456777653 456667664
No 37
>PHA03049 IMV membrane protein; Provisional
Probab=28.27 E-value=13 Score=23.06 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHheeeeEEEe
Q 031352 3 AIFLTPIIALGLIFLILWLGLR 24 (161)
Q Consensus 3 ~~~~~~i~~~~~~~li~~lv~r 24 (161)
+-++.+++.++++++|+|-+|+
T Consensus 3 ~d~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 3 GDIILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777778888899997774
No 38
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=28.24 E-value=69 Score=17.75 Aligned_cols=19 Identities=26% Similarity=0.259 Sum_probs=12.5
Q ss_pred HHHHHHHHheeeeEEEecC
Q 031352 8 PIIALGLIFLILWLGLRPH 26 (161)
Q Consensus 8 ~i~~~~~~~li~~lv~rP~ 26 (161)
+++++-.+..++|+.++++
T Consensus 28 ~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 28 VILFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHHHhheEEEeCC
Confidence 3444566777888887653
No 39
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=27.38 E-value=1.5e+02 Score=20.97 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=34.7
Q ss_pred CCcEEEEeeEEecceecCCCCCceEEEEEEEEEEeCCCceeEEEEeceEEEEEECCEEEe
Q 031352 26 HAPKFHIHEFSVPGLSLGQPNGFQNASVSFNVTARNPNRRVRILYESLDGSVYYRDYQVG 85 (161)
Q Consensus 26 ~~P~~~V~~~~v~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg 85 (161)
++|+.++.+.+- +. .+-.+.+..+++|-.+ ..+..=.+++.+..++...+
T Consensus 46 ~~~~~~~~~~~~--l~-------~~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~ 95 (149)
T PF09624_consen 46 KKIELTLTSQKR--LQ-------YSESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSG 95 (149)
T ss_pred CCceEEEeeeee--ee-------eccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccC
Confidence 557777766653 31 2467788899999886 57777778888887654333
No 40
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=27.11 E-value=19 Score=23.83 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=11.5
Q ss_pred EEEeeEEecceecCCCCCceEEEEEEEEEEeCCCce
Q 031352 30 FHIHEFSVPGLSLGQPNGFQNASVSFNVTARNPNRR 65 (161)
Q Consensus 30 ~~V~~~~v~~~~~~~~~~~l~~~l~~~l~~~NPN~~ 65 (161)
-....++++++.++.+.-.+.+.=.+++.++|.+..
T Consensus 20 ~~~v~I~~~~~~f~P~~i~v~~G~~v~l~~~N~~~~ 55 (104)
T PF13473_consen 20 AQTVTITVTDFGFSPSTITVKAGQPVTLTFTNNDSR 55 (104)
T ss_dssp ----------EEEES-EEEEETTCEEEEEEEE-SSS
T ss_pred cccccccccCCeEecCEEEEcCCCeEEEEEEECCCC
Confidence 333444555554443222222333456777777553
No 41
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=26.96 E-value=31 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.540 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHheeeeEEEec
Q 031352 3 AIFLTPIIALGLIFLILWLGLRP 25 (161)
Q Consensus 3 ~~~~~~i~~~~~~~li~~lv~rP 25 (161)
+.++++++.+++..++.+|+++-
T Consensus 66 glii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 66 GLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHHheeec
Confidence 44556677777888888887764
No 42
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.28 E-value=14 Score=21.26 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=8.8
Q ss_pred HHHHHHheeeeEEEecC
Q 031352 10 IALGLIFLILWLGLRPH 26 (161)
Q Consensus 10 ~~~~~~~li~~lv~rP~ 26 (161)
++.++.++++|.+++|+
T Consensus 17 ~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHccc
Confidence 33334444444467886
No 43
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=26.16 E-value=90 Score=24.23 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=19.5
Q ss_pred EEEEeCCCceeEEEEeceEEEEEECCEEEecccccCceee
Q 031352 56 NVTARNPNRRVRILYESLDGSVYYRDYQVGSVLLLNSFKQ 95 (161)
Q Consensus 56 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q 95 (161)
.+.+.||.- .-+.+.++. .+|..+.... ++||.+
T Consensus 165 ~l~v~NpTP-yyvtl~~l~----v~~~~~~~~m-i~P~s~ 198 (228)
T PRK15188 165 QLTITNPSP-YYVSMVELY----SAGKKLPNTM-VPPKGA 198 (228)
T ss_pred EEEEECCCC-cEEEEEEEE----ECCcccCCce-ECCCCc
Confidence 388889886 345554433 3565553333 677655
No 44
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.16 E-value=65 Score=22.89 Aligned_cols=14 Identities=0% Similarity=-0.130 Sum_probs=8.1
Q ss_pred EEeceEEEEEECCE
Q 031352 69 LYESLDGSVYYRDY 82 (161)
Q Consensus 69 ~Y~~~~~~v~Y~g~ 82 (161)
+|=..++.+.+++.
T Consensus 63 ~ylk~~i~l~~~~~ 76 (142)
T PRK07718 63 NFIRIQFKIETDSK 76 (142)
T ss_pred CEEEEEEEEEECCH
Confidence 35456666666654
No 45
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.70 E-value=2.8e+02 Score=20.19 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=10.9
Q ss_pred EEEeceEEEEEECCEE
Q 031352 68 ILYESLDGSVYYRDYQ 83 (161)
Q Consensus 68 i~Y~~~~~~v~Y~g~~ 83 (161)
.+|=.+.+.+.+++..
T Consensus 86 ~ryLkv~i~L~~~~~~ 101 (166)
T PRK12785 86 VQYLKLKVVLEVKDEK 101 (166)
T ss_pred ceEEEEEEEEEECCHH
Confidence 4677777777777643
No 46
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=24.60 E-value=2.9e+02 Score=20.30 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=15.6
Q ss_pred EEEEEEEeCCCceeEEEEeceEEEEEECC
Q 031352 53 VSFNVTARNPNRRVRILYESLDGSVYYRD 81 (161)
Q Consensus 53 l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g 81 (161)
+.+.+.+...+..+.+.|+..-=+++=.|
T Consensus 78 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEG 106 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSYEGILPDLFREG 106 (159)
T ss_pred cEEEEEEEcCCcEEEEEEeccCCccccCC
Confidence 44555556655556666655443444444
No 47
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=24.56 E-value=49 Score=21.63 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=6.2
Q ss_pred ChhhhHHHHHHHH
Q 031352 1 MCAIFLTPIIALG 13 (161)
Q Consensus 1 ~c~~~~~~i~~~~ 13 (161)
+||+++.+++++.
T Consensus 40 ic~~lVfVii~lF 52 (84)
T PF06143_consen 40 ICCFLVFVIIVLF 52 (84)
T ss_pred HHHHHHHHHHHHH
Confidence 4666544444333
No 48
>PF14828 Amnionless: Amnionless
Probab=23.89 E-value=52 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHheeeeEEEecCCcEE
Q 031352 4 IFLTPIIALGLIFLILWLGLRPHAPKF 30 (161)
Q Consensus 4 ~~~~~i~~~~~~~li~~lv~rP~~P~~ 30 (161)
+++..++++++++.++|+.+.|+.|.+
T Consensus 343 ~vl~~Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 343 IVLGCLLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred ehHHHHHHHHHHHHhheEEeccccccc
Confidence 344445555555555655555666655
No 49
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=23.81 E-value=2.2e+02 Score=20.83 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=9.0
Q ss_pred HHHHHHHHHheeeeEEE
Q 031352 7 TPIIALGLIFLILWLGL 23 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~ 23 (161)
++++++++.+..+|+..
T Consensus 26 ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 26 IVLLALAGAGYFFWFGS 42 (159)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 33344555566666654
No 50
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=23.72 E-value=2.4e+02 Score=19.13 Aligned_cols=75 Identities=17% Similarity=0.340 Sum_probs=33.1
Q ss_pred HHHHHHHHHheeeeEEEe-cCCcEEEEeeEEecceecCCCCCceEEEEEEEEEEeCCCceeEEEEeceEEEEEECCEEEe
Q 031352 7 TPIIALGLIFLILWLGLR-PHAPKFHIHEFSVPGLSLGQPNGFQNASVSFNVTARNPNRRVRILYESLDGSVYYRDYQVG 85 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~r-P~~P~~~V~~~~v~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg 85 (161)
+.++++.+++++.|+.++ ...|.++-+.. +|+..+ ++.+ ++++.++-. |....--.-+ ...|++..+|
T Consensus 10 ~~v~~vv~~~~~~w~~~~~~~~~~v~~~~~---gf~vv~-d~~v--~v~f~Vtr~-~~~~a~C~Vr----A~~~d~aeVG 78 (112)
T PF14155_consen 10 GAVLVVVAGAVVAWFGYSQFGSPPVSAEVI---GFEVVD-DSTV--EVTFDVTRD-PGRPAVCIVR----ALDYDGAEVG 78 (112)
T ss_pred HHHHHHHHHHHHhHhhhhhccCCCceEEEE---EEEECC-CCEE--EEEEEEEEC-CCCCEEEEEE----EEeCCCCEEE
Confidence 444445555666676655 44455533333 332222 2232 233333322 5543211111 2346777778
Q ss_pred cccc-cCc
Q 031352 86 SVLL-LNS 92 (161)
Q Consensus 86 ~~~~-~p~ 92 (161)
.... +|+
T Consensus 79 rreV~vp~ 86 (112)
T PF14155_consen 79 RREVLVPP 86 (112)
T ss_pred EEEEEECC
Confidence 6541 454
No 51
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=23.62 E-value=1.2e+02 Score=20.25 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=8.5
Q ss_pred HHHHHHHHHheeeeE-EEe
Q 031352 7 TPIIALGLIFLILWL-GLR 24 (161)
Q Consensus 7 ~~i~~~~~~~li~~l-v~r 24 (161)
++++++.++.+|.|+ ++|
T Consensus 70 s~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 70 SFVCILVILYAIYYFVILR 88 (101)
T ss_pred HHHHHHHHHhhheEEEEEe
Confidence 334444444455565 444
No 52
>PF12202 OSR1_C: Oxidative-stress-responsive kinase 1 C terminal; InterPro: IPR024678 Oxidative-stress-responsive kinase 1 (OSR1) is involved in the signalling cascade which activates Na/K/2Cl co-transporter during osmotic stress. This entry represents the CCT domain found in OSR1, STE20/SPS1-related kinase and in WNK activators []. This domain is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue F that may be functionally important. ; PDB: 2V3S_A 2LRU_A.
Probab=23.50 E-value=1.1e+02 Score=16.91 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=11.4
Q ss_pred EEEEEEEeCCCceeEEEEec
Q 031352 53 VSFNVTARNPNRRVRILYES 72 (161)
Q Consensus 53 l~~~l~~~NPN~~~~i~Y~~ 72 (161)
+++.|+++||.++-+ .|..
T Consensus 1 i~l~Lrv~d~kK~~~-k~ke 19 (38)
T PF12202_consen 1 INLRLRVRDPKKRKG-KHKE 19 (38)
T ss_dssp EEEEEEEC-TTSSSS-S--T
T ss_pred CcEEEEEeccccccC-cccc
Confidence 468899999987544 4543
No 53
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=23.44 E-value=93 Score=22.68 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=12.2
Q ss_pred HHHHHHHHHheeeeEEEecC
Q 031352 7 TPIIALGLIFLILWLGLRPH 26 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~rP~ 26 (161)
++++++.+.++++|-.=|..
T Consensus 18 Ll~lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 18 LLLLLLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHHHHHhcceEEEeeccC
Confidence 33445556678888765543
No 54
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=22.93 E-value=64 Score=25.42 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=25.1
Q ss_pred HHHHHHHHHheeeeEEEecCCcEEEEeeEEecc
Q 031352 7 TPIIALGLIFLILWLGLRPHAPKFHIHEFSVPG 39 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~rP~~P~~~V~~~~v~~ 39 (161)
..++++++.++++|....++.|.|.+..+.+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 37 LYLVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 344455566777788888888999999999876
No 55
>PRK05529 cell division protein FtsQ; Provisional
Probab=22.91 E-value=79 Score=24.81 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=11.9
Q ss_pred CcEEEEeeEEecce
Q 031352 27 APKFHIHEFSVPGL 40 (161)
Q Consensus 27 ~P~~~V~~~~v~~~ 40 (161)
.|.|.|.++++++-
T Consensus 58 Sp~~~v~~I~V~Gn 71 (255)
T PRK05529 58 SPLLALRSIEVAGN 71 (255)
T ss_pred CCceEEEEEEEECC
Confidence 48999999999865
No 56
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=22.64 E-value=2.7e+02 Score=21.82 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=7.8
Q ss_pred EEEECCEEEeccc
Q 031352 76 SVYYRDYQVGSVL 88 (161)
Q Consensus 76 ~v~Y~g~~lg~~~ 88 (161)
.|.|+|.++|..+
T Consensus 50 ~V~~~Gv~VG~V~ 62 (291)
T TIGR00996 50 KVRVRGVPVGKVT 62 (291)
T ss_pred ceEEcceEEEEEE
Confidence 4566666666544
No 57
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.56 E-value=90 Score=22.64 Aligned_cols=16 Identities=6% Similarity=-0.245 Sum_probs=10.8
Q ss_pred EEEeceEEEEEECCEE
Q 031352 68 ILYESLDGSVYYRDYQ 83 (161)
Q Consensus 68 i~Y~~~~~~v~Y~g~~ 83 (161)
-+|=...+.+.+.+..
T Consensus 78 ~rylkv~i~L~~~~~~ 93 (162)
T PRK07021 78 DRVLYVGLTLRLPDEA 93 (162)
T ss_pred ceEEEEEEEEEECCHH
Confidence 4677777777776653
No 58
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=22.12 E-value=49 Score=20.67 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHheeeeEEEe
Q 031352 3 AIFLTPIIALGLIFLILWLGLR 24 (161)
Q Consensus 3 ~~~~~~i~~~~~~~li~~lv~r 24 (161)
+-++.+++.++++++|+|-+|+
T Consensus 3 ~d~iLi~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 3 GDFILIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777778888888887664
No 59
>CHL00020 psbN photosystem II protein N
Probab=21.29 E-value=99 Score=17.54 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=14.4
Q ss_pred HHHHHHHHHHheeeeEEEec
Q 031352 6 LTPIIALGLIFLILWLGLRP 25 (161)
Q Consensus 6 ~~~i~~~~~~~li~~lv~rP 25 (161)
.+..+++++...-+|..+-|
T Consensus 10 ~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 10 FISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHhhheeeeeccCC
Confidence 34455677888888888876
No 60
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=21.19 E-value=1.3e+02 Score=23.92 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=16.7
Q ss_pred ceEEEEEEEEEEeCCCceeEEE
Q 031352 48 FQNASVSFNVTARNPNRRVRIL 69 (161)
Q Consensus 48 ~l~~~l~~~l~~~NPN~~~~i~ 69 (161)
.+...=++++.++|||.++.=+
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQ 126 (292)
T ss_pred EEEeccCeeEEccCCCCceeee
Confidence 4566778999999999876433
No 61
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=20.88 E-value=1.2e+02 Score=23.59 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=18.0
Q ss_pred EEEEeCCCceeEEEEeceEEEEEECCEEEecccccCceee
Q 031352 56 NVTARNPNRRVRILYESLDGSVYYRDYQVGSVLLLNSFKQ 95 (161)
Q Consensus 56 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q 95 (161)
.+.+.||.- ..+.+.++.+ +|..+.....++||.+
T Consensus 168 ~l~v~NpTP-yyvtl~~l~~----~~~~~~~~~mi~Pfs~ 202 (236)
T PRK11385 168 GVQLTNPTP-YYINLIQVSV----NGKALSNAGVVPPKSQ 202 (236)
T ss_pred EEEEECCCC-cEEEEEeEEE----CCcccCCCceECCCCc
Confidence 378889886 3454544432 5544422212566543
No 62
>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.86 E-value=55 Score=22.46 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=9.9
Q ss_pred EEEEeCCCceeE
Q 031352 56 NVTARNPNRRVR 67 (161)
Q Consensus 56 ~l~~~NPN~~~~ 67 (161)
.++++|||.+..
T Consensus 90 ~F~~~NPNA~~~ 101 (110)
T COG0316 90 GFTFKNPNAKSS 101 (110)
T ss_pred ceEEECCCCCcc
Confidence 689999998753
No 63
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=20.69 E-value=24 Score=20.38 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=10.3
Q ss_pred HHHHHHHHHheeeeEEEecC
Q 031352 7 TPIIALGLIFLILWLGLRPH 26 (161)
Q Consensus 7 ~~i~~~~~~~li~~lv~rP~ 26 (161)
+++.++++.+.+++.+++|+
T Consensus 15 ~l~~~~~~Figiv~wa~~p~ 34 (48)
T cd01324 15 GLLYLALFFLGVVVWAFRPG 34 (48)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 33333444444555577785
No 64
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.69 E-value=2.5e+02 Score=19.35 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=10.6
Q ss_pred EEEEEEEEeCCCce
Q 031352 52 SVSFNVTARNPNRR 65 (161)
Q Consensus 52 ~l~~~l~~~NPN~~ 65 (161)
..+.++.+.|-|.+
T Consensus 53 ~y~y~i~ayn~~Gk 66 (113)
T COG5294 53 GYEYTITAYNKNGK 66 (113)
T ss_pred cceeeehhhccCCc
Confidence 56688888888774
No 65
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.63 E-value=1.7e+02 Score=22.62 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=23.4
Q ss_pred EEEEeCCCceeEEEEeceEEEEEECCEEEe--cccccCceeeC
Q 031352 56 NVTARNPNRRVRILYESLDGSVYYRDYQVG--SVLLLNSFKQD 96 (161)
Q Consensus 56 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg--~~~~~p~f~q~ 96 (161)
.++++||-. ..+.+.++.+.. +|..++ ..- ++||.+.
T Consensus 166 ~l~v~Nptp-y~vtl~~~~l~~--~~~~~~~~~~m-v~P~s~~ 204 (235)
T COG3121 166 LLTVKNPTP-YYVTLANLTLNV--GGRKLGLNSGM-VAPFSTR 204 (235)
T ss_pred EEEEECCCC-cEEEEEEEEEee--CceecCCCcce-ECCCccc
Confidence 688999987 466666655555 666665 333 5555443
No 66
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=20.26 E-value=34 Score=27.63 Aligned_cols=12 Identities=25% Similarity=0.550 Sum_probs=0.0
Q ss_pred HHHHHHHheeee
Q 031352 9 IIALGLIFLILW 20 (161)
Q Consensus 9 i~~~~~~~li~~ 20 (161)
++++|+++.|.|
T Consensus 159 LLIA~iIa~icy 170 (290)
T PF05454_consen 159 LLIAGIIACICY 170 (290)
T ss_dssp ------------
T ss_pred HHHHHHHHHHhh
Confidence 333444444444
Done!