Query 031352
Match_columns 161
No_of_seqs 129 out of 778
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 20:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.6 4.8E-07 1.7E-11 66.3 11.0 77 26-110 43-120 (174)
2 3but_A Uncharacterized protein 98.5 5.7E-06 2E-10 58.2 13.1 73 50-125 17-89 (136)
3 1xo8_A AT1G01470; structural g 98.4 3.8E-07 1.3E-11 65.4 6.1 77 26-110 20-97 (151)
4 2l0d_A Cell surface protein; s 49.1 54 0.0018 21.6 6.2 53 50-108 18-70 (114)
5 2kj1_A BM2 protein; cytoplasmi 33.7 9.6 0.00033 23.2 0.2 15 51-65 8-22 (89)
6 3me0_B PAPG protein; immunoglo 26.2 1.5E+02 0.0052 19.9 6.5 85 23-111 9-109 (128)
7 1nrp_R Receptor based peptide 25.9 11 0.00036 17.7 -0.5 10 57-66 6-15 (26)
8 2knc_B Integrin beta-3; transm 25.2 20 0.00069 22.1 0.6 15 6-20 18-32 (79)
9 2v3s_A Serine/threonine-protei 24.8 89 0.003 20.0 3.6 13 53-65 3-15 (96)
10 1nro_R Receptor based peptide 23.4 19 0.00064 17.0 0.1 9 58-66 7-15 (27)
11 2k9j_B Integrin beta-3; transm 20.0 31 0.0011 18.6 0.6 15 6-20 17-31 (43)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.62 E-value=4.8e-07 Score=66.25 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=67.0
Q ss_pred CCcEEEEeeEEecceecCCCCCceEEEEEEEEEEeCCCceeEEEEeceEEEEEECCEEEecccccC-ceeeCCCCeeEEE
Q 031352 26 HAPKFHIHEFSVPGLSLGQPNGFQNASVSFNVTARNPNRRVRILYESLDGSVYYRDYQVGSVLLLN-SFKQDPKNTTTLQ 104 (161)
Q Consensus 26 ~~P~~~V~~~~v~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p-~f~q~~~~~~~v~ 104 (161)
++|+++++++++.+++.. .+++.+.++++|||. ..+.+..++..+.-+|..++++. .| ++..++++++.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l~------~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~-s~~~~tIpa~g~~~v~ 114 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD------GVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGT-IPDPGSLVGSGTTVLD 114 (174)
T ss_dssp CCCEEEEEEEEEEEECSS------SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEE-ESCCCBCCSSEEEEEE
T ss_pred CCCEEEEEEeEEeccccc------eEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEe-cCCCceECCCCcEEEE
Confidence 579999999999888333 488999999999997 79999999999999999999988 55 5788889999998
Q ss_pred EEEEee
Q 031352 105 YEVSGA 110 (161)
Q Consensus 105 ~~~~~~ 110 (161)
+.++..
T Consensus 115 Vpv~v~ 120 (174)
T 1yyc_A 115 VPVKVA 120 (174)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 887653
No 2
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.48 E-value=5.7e-06 Score=58.20 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=61.7
Q ss_pred EEEEEEEEEEeCCCceeEEEEeceEEEEEECCEEEecccccCceeeCCCCeeEEEEEEEeeeeeeccChhhHHHHH
Q 031352 50 NASVSFNVTARNPNRRVRILYESLDGSVYYRDYQVGSVLLLNSFKQDPKNTTTLQYEVSGAMMMSTVSNQSWAEFT 125 (161)
Q Consensus 50 ~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~ 125 (161)
...+.+.++++|||. .++.++.++..+..+|.++|++.+...+..++.+++.+.+.+..+.. .+.+...+.++
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~--~l~~~~~~hi~ 89 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNS--FLREWWVTHIA 89 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHH--HHTTHHHHHHH
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchH--HhHHHHHHHhh
Confidence 578999999999997 79999999999999999999987567889999998889998888766 66655444444
No 3
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.43 E-value=3.8e-07 Score=65.38 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=65.7
Q ss_pred CCcEEEEeeEEecceecCCCCCceEEEEEEEEEEeCCCceeEEEEeceEEEEEECCEEEecccccC-ceeeCCCCeeEEE
Q 031352 26 HAPKFHIHEFSVPGLSLGQPNGFQNASVSFNVTARNPNRRVRILYESLDGSVYYRDYQVGSVLLLN-SFKQDPKNTTTLQ 104 (161)
Q Consensus 26 ~~P~~~V~~~~v~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p-~f~q~~~~~~~v~ 104 (161)
++|++++.++++.++ + ....++.+.++++|||. .++.+..++..+.-+|..++++. .+ ++..++++++.+.
T Consensus 20 ~~P~v~v~~v~~~~~--~----~~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~-~~~~~~ipa~g~~~v~ 91 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDV--N----RDSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGK-IPDPGSLKAKDMTALD 91 (151)
T ss_dssp CSCCCBCSEEEECCC--T----TTEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEE-EEECCCCSSSSEEEEE
T ss_pred CCCEEEEEEeEEecc--C----cceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEe-cCCCcEECCCCcEEEE
Confidence 679999999999877 3 23578999999999997 79999999999999999999988 54 5788889999888
Q ss_pred EEEEee
Q 031352 105 YEVSGA 110 (161)
Q Consensus 105 ~~~~~~ 110 (161)
+.++..
T Consensus 92 vpv~v~ 97 (151)
T 1xo8_A 92 IPVVVP 97 (151)
T ss_dssp ECCCEE
T ss_pred EEEEEE
Confidence 876654
No 4
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=49.12 E-value=54 Score=21.56 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=33.5
Q ss_pred EEEEEEEEEEeCCCceeEEEEeceEEEEEECCEEEecccccCceeeCCCCeeEEEEEEE
Q 031352 50 NASVSFNVTARNPNRRVRILYESLDGSVYYRDYQVGSVLLLNSFKQDPKNTTTLQYEVS 108 (161)
Q Consensus 50 ~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~~~~v~~~~~ 108 (161)
.-...++..++|.-..-. ....+.++.+|..++..+ +++ ..++.++.+.+.+.
T Consensus 18 ~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~-v~~--LaaG~s~tv~~~w~ 70 (114)
T 2l0d_A 18 NTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQT-VTS--LESENSTNVDFHWT 70 (114)
T ss_dssp TSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEE-ESC--BCBTCEEEEEEEEE
T ss_pred CCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEccee-ccc--ccCCCEEEEEEEEe
Confidence 345677889999765321 446777888999888877 654 33344444555443
No 5
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=33.71 E-value=9.6 Score=23.24 Aligned_cols=15 Identities=20% Similarity=0.583 Sum_probs=4.1
Q ss_pred EEEEEEEEEeCCCce
Q 031352 51 ASVSFNVTARNPNRR 65 (161)
Q Consensus 51 ~~l~~~l~~~NPN~~ 65 (161)
-..++.++++|||+.
T Consensus 8 rgv~lki~ir~pnke 22 (89)
T 2kj1_A 8 RGVNMKIRIKGPNKE 22 (89)
T ss_dssp ----------CCCHH
T ss_pred ccCceEEEecCCCHH
Confidence 446788999999973
No 6
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=26.17 E-value=1.5e+02 Score=19.93 Aligned_cols=85 Identities=15% Similarity=0.231 Sum_probs=46.0
Q ss_pred EecCCcEEEEeeEEecceecCCCCCceEEE--------EEEEEEE-eC--C--C--ceeEEEEe-ceEEEEEECCEEEec
Q 031352 23 LRPHAPKFHIHEFSVPGLSLGQPNGFQNAS--------VSFNVTA-RN--P--N--RRVRILYE-SLDGSVYYRDYQVGS 86 (161)
Q Consensus 23 ~rP~~P~~~V~~~~v~~~~~~~~~~~l~~~--------l~~~l~~-~N--P--N--~~~~i~Y~-~~~~~v~Y~g~~lg~ 86 (161)
-||..|.+.++.-.++.=+++. ...+-+ .++.+.+ .| | | .++.+-.+ .++..++-+|+..++
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~G--nt~~~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e 86 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSANN--HYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGE 86 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCSS--CEEEEEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSE
T ss_pred cCCCCCceecccceechhhcCC--CEEeeEEEEEeCCCceEEEEEecCCcccccccCceEEecCCCeEEEEEECCeeccc
Confidence 3788899999877765442232 111111 1222333 32 1 1 23455554 477888889988887
Q ss_pred ccccCceeeCCCCeeEEEEEEEeee
Q 031352 87 VLLLNSFKQDPKNTTTLQYEVSGAM 111 (161)
Q Consensus 87 ~~~~p~f~q~~~~~~~v~~~~~~~~ 111 (161)
.. + .|+....++-.+.-++.+..
T Consensus 87 ~~-~-~~~~~~s~tvtV~S~L~g~~ 109 (128)
T 3me0_B 87 TT-M-RWYKAGTQNLTIGSRLYGES 109 (128)
T ss_dssp EE-E-EESSSEEEEEEEEEEEEECS
T ss_pred ee-E-EEEecCCcEEEEEEEEecCc
Confidence 77 6 44443334445555664443
No 7
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=25.89 E-value=11 Score=17.72 Aligned_cols=10 Identities=40% Similarity=0.627 Sum_probs=7.2
Q ss_pred EEEeCCCcee
Q 031352 57 VTARNPNRRV 66 (161)
Q Consensus 57 l~~~NPN~~~ 66 (161)
+-.+|||.+.
T Consensus 6 fllrnpndky 15 (26)
T 1nrp_R 6 FLLRNPNDKY 15 (26)
T ss_pred hhhcCCCccc
Confidence 3468999864
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.24 E-value=20 Score=22.11 Aligned_cols=15 Identities=33% Similarity=0.926 Sum_probs=9.9
Q ss_pred HHHHHHHHHHheeee
Q 031352 6 LTPIIALGLIFLILW 20 (161)
Q Consensus 6 ~~~i~~~~~~~li~~ 20 (161)
++.++++|++++++|
T Consensus 18 i~gilliGllllliw 32 (79)
T 2knc_B 18 MGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666777777776
No 9
>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens}
Probab=24.77 E-value=89 Score=19.98 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=10.7
Q ss_pred EEEEEEEeCCCce
Q 031352 53 VSFNVTARNPNRR 65 (161)
Q Consensus 53 l~~~l~~~NPN~~ 65 (161)
+++.|+.||+++.
T Consensus 3 v~LvLRlRn~~rE 15 (96)
T 2v3s_A 3 ISLVLRLRNSKKE 15 (96)
T ss_dssp EEEEEEEECTTSC
T ss_pred eeEEEEeccccch
Confidence 4778999999974
No 10
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=23.36 E-value=19 Score=17.01 Aligned_cols=9 Identities=44% Similarity=0.693 Sum_probs=6.7
Q ss_pred EEeCCCcee
Q 031352 58 TARNPNRRV 66 (161)
Q Consensus 58 ~~~NPN~~~ 66 (161)
-.+|||.+.
T Consensus 7 llrnpndky 15 (27)
T 1nro_R 7 LLRNPNDKY 15 (27)
T ss_pred cccCCCccc
Confidence 468999864
No 11
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=20.03 E-value=31 Score=18.65 Aligned_cols=15 Identities=33% Similarity=0.926 Sum_probs=9.7
Q ss_pred HHHHHHHHHHheeee
Q 031352 6 LTPIIALGLIFLILW 20 (161)
Q Consensus 6 ~~~i~~~~~~~li~~ 20 (161)
+..++++|++++++|
T Consensus 17 i~~ivliGl~lLliw 31 (43)
T 2k9j_B 17 MGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344666777777766
Done!