Citrus Sinensis ID: 031353

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVGVSTLRQYDVSGLRMCSYSWGFLVFHDKQACHHNWPQHTCFDFVDSI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccccccEccc
Coil and Loop (DISEMBL)
msgsppllLNQILFFLCgcayslplpflrwkshtfmaPLCLVITMgltglpfymhtqqyvlgrpfvitrpLILMGAIMSIFAFVNGLlkdlpdvegdkkfgMNTLCVLLGKEKVGVSTLRQYdvsglrmcsyswgflvfhdkqachhnwpqhtcfdfvdsi
Flexible Loop (DISEMBL)
MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVllgkekvgvsTLRQYDVSGLRMCSYSWGFLVFHDKQACHHNWPQHTCFDFVDSI
Low Complexity Region (SEG)
MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVGVSTLRQYDVSGLRMCSYSWGFLVFHDKQACHHNWPQHTCFDFVDSI
Disordered region (IsUnstruct)
******LLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVGVSTLRQYDVSGLRMCSYSWGFLVFHDKQACHHNWPQHTCFDFV***
Disordered Region (DISOPRED)
**GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVGVSTLRQYDVSGLRMCSYSWGFLVFHDKQACHHNWPQHTCFDFVDSI
Disordered Region (DISEMBL)
MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVGVSTLRQYDVSGLRMCSYSWGFLVFHDKQACHHNWPQHTCFDFVDSI
Disordered Region (DISPRO)
**GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVGVSTLRQYDVSGLRMCSYSWGFLVFHDKQACHHNWPQHTCFDFVDSI
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVGVSTLRQYDVSGLRMCSYSWGFLVFHDKQACHHNWPQHTCFDFVDSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	yes	no	0.695	0.277	0.469	2e-23
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.695	0.284	0.451	6e-23
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.689	0.270	0.392	5e-17
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.708	0.278	0.365	1e-16
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.590	0.246	0.373	6e-08
Q0D576	379	Probable homogentisate ph	no	no	0.590	0.250	0.353	2e-06

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL L   + F+ G AYS+ LPFLRWK    +A LC L +   +  L F++H Q +V 
Sbjct: 213 GSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVF 272

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
            RP V TRPLI   A M+ F+ V  L KD+PD+EGD+ FG+ +  V LG++KV
Sbjct: 273 RRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKV 325

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  106 bits (264), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  + FY+H Q +V 
Sbjct: 202 GSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVF 261

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           GRP + TRPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+++V
Sbjct: 262 GRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 4   SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQYVLG 62
           S PL     +  +   AY++ LP LRWK +  +  +  +  + +T  L F++H Q  V  
Sbjct: 220 SWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFK 279

Query: 63  RPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           RP    RPLI   AI+SI+A V  L KD+PD+EGD+KFG+ +L + LG ++V
Sbjct: 280 RPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 1   MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQY 59
           ++GS PL+ N ++      AYS+ +P LRWK + F+A +C++ T  L   + ++ H Q  
Sbjct: 216 ITGSWPLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTV 275

Query: 60  VLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           VL RP    R L  + A M+ ++    L KD+PDVEGDK+ G+++  V LG+++ 
Sbjct: 276 VLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRA 330

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 18  GCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGA 76
           G  YS+P P LR K     A L +    G L     Y H  +  LG PF  + P+  + +
Sbjct: 212 GTIYSVP-P-LRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITS 268

Query: 77  IMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVG 115
            +++FA V  + KDLPDVEGD+KF ++TL   LG   + 
Sbjct: 269 FVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIA 307

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 18  GCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLILMGA 76
           G  YS+P PF R K +   A L +    G L     Y  T+   LG  F  + P+  +  
Sbjct: 205 GTIYSVP-PF-RLKRYPVAAFLIIATVRGFLLNFGVYYATRA-ALGLTFQWSSPVAFITC 261

Query: 77  IMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVG 115
            +++FA V  + KDLPDVEGD+K+ ++TL   LG   + 
Sbjct: 262 FVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIA 300

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
374461300	239	aromatic prenyltransferase, partial [Epi	0.739	0.497	0.479	7e-24
185487419	407	homogentisate phytyltransferase [Manihot	0.695	0.275	0.477	3e-22
338810328	404	RecName: Full=Probable homogentisate phy	0.695	0.277	0.469	8e-22
222636027	397	hypothetical protein OsJ_22228 [Oryza sa	0.695	0.282	0.469	1e-21
377657555	394	homogentisate phytyltransferase [Brassic	0.695	0.284	0.460	2e-21
147858275	406	hypothetical protein VITISV_043992 [Viti	0.695	0.275	0.460	2e-21
224143686	398	predicted protein [Populus trichocarpa]	0.695	0.281	0.469	2e-21
297836742	393	predicted protein [Arabidopsis lyrata su	0.695	0.284	0.451	2e-21
213876760	393	homogentisate phytyltransferase 1 [Binar	0.695	0.284	0.451	3e-21
30680535	393	homogentisate phytyltransferase 1 [Arabi	0.695	0.284	0.451	3e-21

>gi|374461300|gb|AEZ53108.1| aromatic prenyltransferase, partial [Epimedium acuminatum]

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 82/123 (66%), Gaps = 4/123 (3%)

Query: 1   MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQY 59
           M  SPPLL + +  FL   AYSL LPFLRWK    +  +C++    L   L F++H Q+Y
Sbjct: 38  MFKSPPLLYSILTVFLLATAYSLHLPFLRWKKSAVLTSVCIISVRALVIPLGFFLHMQKY 97

Query: 60  VLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GV 116
           VLGRP +IT+P++   A M+I + V  ++KD+PDV+GD+ FG+ +L + LGKEKV   GV
Sbjct: 98  VLGRPAIITKPVMFAVAFMAIISTVIAVIKDIPDVDGDEAFGLQSLTIRLGKEKVFWLGV 157

Query: 117 STL 119
           STL
Sbjct: 158 STL 160

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK   F+A +C L +   +  L FY+H Q +V 
Sbjct: 216 GSWPLFWALFVSFVLGTAYSINLPLLRWKRFAFVAAMCILAVRAVIVQLAFYLHMQTHVY 275

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           GRP V +RPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+E+V
Sbjct: 276 GRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQERV 328

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338810328|sp|B7FA90.1|HPT1_ORYSJ RecName: Full=Probable homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=OsVTE2-1; Flags: Precursor gi|215769309|dbj|BAH01538.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL L   + F+ G AYS+ LPFLRWK    +A LC L +   +  L F++H Q +V 
Sbjct: 213 GSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVF 272

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
            RP V TRPLI   A M+ F+ V  L KD+PD+EGD+ FG+ +  V LG++KV
Sbjct: 273 RRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKV 325

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222636027|gb|EEE66159.1| hypothetical protein OsJ_22228 [Oryza sativa Japonica Group]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL L   + F+ G AYS+ LPFLRWK    +A LC L +   +  L F++H Q +V 
Sbjct: 206 GSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVF 265

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
            RP V TRPLI   A M+ F+ V  L KD+PD+EGD+ FG+ +  V LG++KV
Sbjct: 266 RRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKV 318

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  + FY+H Q +V 
Sbjct: 203 GSWPLFWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVF 262

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           GRP + TRPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+E+V
Sbjct: 263 GRPVMFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERV 315

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  + FYMH Q +V 
Sbjct: 215 GSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYMHVQTFVY 274

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           GRP V +RPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+++V
Sbjct: 275 GRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVRLGQKRV 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143686|ref|XP_002325040.1| predicted protein [Populus trichocarpa] gi|222866474|gb|EEF03605.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK   F+A +C L +   +  L FY+H Q +V 
Sbjct: 213 GSWPLFWALFISFVLGTAYSINLPLLRWKRFAFVAAVCILAVRAVIVQLAFYLHMQTHVY 272

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           GRP V++RPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+ +V
Sbjct: 273 GRPPVLSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQNRV 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  + FY+H Q +V 
Sbjct: 202 GSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVF 261

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           GRP + TRPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+++V
Sbjct: 262 GRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|213876760|gb|ACJ54263.1| homogentisate phytyltransferase 1 [Binary vector pCAMBIA1300-VE2-7S] gi|213876777|gb|ACJ54276.1| homogentisate phytyltransferase 1 [Binary vector pCAMBIA1300-VE2-VE3]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  + FY+H Q +V 
Sbjct: 202 GSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVF 261

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           GRP + TRPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+++V
Sbjct: 262 GRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

Source: Binary vector pCAMBIA1300-VE2-7S

Species: Binary vector pCAMBIA1300-VE2-7S

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|30680535|ref|NP_849984.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana] gi|75161194|sp|Q8VWJ1.1|HPT1_ARATH RecName: Full=Homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Tocopherol polyprenyltransferase 1; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=AtVTE2-1; Flags: Precursor gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol polyprenyltransferase [Arabidopsis thaliana] gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis thaliana] gi|20384919|gb|AAM10489.1| homogentisate phytylprenyltransferase [Arabidopsis thaliana] gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis thaliana] gi|281193026|gb|ADA57641.1| homogentisate phytyltransferase [Arabidopsis thaliana] gi|330251737|gb|AEC06831.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQYVL 61
           GS PL     + F+ G AYS+ LP LRWK    +A +C L +   +  + FY+H Q +V 
Sbjct: 202 GSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVF 261

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           GRP + TRPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+++V
Sbjct: 262 GRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.695	0.284	0.442	4.4e-22
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.695	0.275	0.398	7e-18
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.677	0.265	0.390	7.2e-17
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.708	0.290	0.360	1.9e-09

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 50/113 (44%), Positives = 70/113 (61%)

Query:     3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVL 61
             GS PL     + F+ G AYS+ LP LRWK    +A +C++    +   + FY+H Q +V 
Sbjct:   202 GSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVF 261

Query:    62 GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
             GRP + TRPLI   A MS F+ V  L KD+PD+EGDK FG+ +  V LG+++V
Sbjct:   262 GRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 222 (83.2 bits), Expect = 7.0e-18, P = 7.0e-18
 Identities = 45/113 (39%), Positives = 67/113 (59%)

Query:     3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQYVL 61
             GS PL     +  +   AY++ LP LRWK +  +  +  +  + +T  L F++H Q  V 
Sbjct:   216 GSWPLFWTVFICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVF 275

Query:    62 GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
              RP    RPLI   AI+SI+A V  L KD+PD+EGD+KFG+ +L + LG ++V
Sbjct:   276 KRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 328

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 213 (80.0 bits), Expect = 7.2e-17, P = 7.2e-17
 Identities = 43/110 (39%), Positives = 65/110 (59%)

Query:     6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLT-GLPFYMHTQQYVLGRP 64
             PL     +  +   AY++ LP LRWK +  +  +  +  + +T  L F++H Q  V  RP
Sbjct:   222 PLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRP 281

Query:    65 FVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
                 RPLI   AI+SI+A V  L KD+PD+EGD+KFG+ +L + LG ++V
Sbjct:   282 TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 44/122 (36%), Positives = 61/122 (50%)

Query:    15 FLCGCAYSLPLPFLRWKSHTFMAPLCLVITMG-LTGLPFYMHTQQYVLGRPFVITRPLIL 73
             FL G  YS+P P LR K     A L +    G L     Y H  +  LG PF  + P+  
Sbjct:   217 FL-GTIYSVP-P-LRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAF 272

Query:    74 MGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQYDVSGLRMC 130
             + + +++FA V  + KDLPDVEGD+KF ++TL   LG   +   G   L    VS + + 
Sbjct:   273 ITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLA 332

Query:   131 SY 132
              Y
Sbjct:   333 FY 334


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.145   0.489    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       161   0.00074  107 3  11 21  0.40    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  167 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.21u 0.15s 14.36t   Elapsed:  00:00:01
  Total cpu time:  14.21u 0.15s 14.36t   Elapsed:  00:00:01
  Start:  Fri May 10 22:32:36 2013   End:  Fri May 10 22:32:37 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	OsI_23976	prenyltransferase, putative, expressed (404 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4329007	tocopherol cyclase, chloroplast precursor, putative, expressed (470 aa)	•		•			•	•		0.793
	4330437	Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed (362 aa)	•					•	•		0.593
	4328425	glyoxalase family protein, putative, expressed (446 aa)						•	•		0.514
	4330711	FAD binding domain containing protein, expressed; Catalyzes the reduction of geranylgeranyl dip [...] (463 aa)			•			•	•		0.513
	OsI_29863	calvin cycle protein CP12, putative, expressed (141 aa)			•						0.475
	4342556	methyltransferase domain containing protein, putative, expressed (330 aa)						•	•		0.407
	OsI_25317	expressed protein (250 aa)			•						0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-33
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	2e-17
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	1e-07
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	2e-05
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	4e-04
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	0.001

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  119 bits (299), Expect = 1e-33
 Identities = 52/115 (45%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 1   MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLC-LVITMGLTGLPFYMHTQQY 59
           + GS PL     + F+ G AYS+ LP LRWK     A  C L +   +  L F++H Q +
Sbjct: 87  IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTH 146

Query: 60  VLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           VLGRP V TRPLI   A M  F+ V  L KD+PDVEGD+ FG+ +  V LG+++V
Sbjct: 147 VLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRV 201

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 3   GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVL 61
             P LL+   +  L G AYSLP P +R K    +A LC+    G+   L  ++H Q ++L
Sbjct: 118 LGPWLLITVGISLLIGTAYSLP-P-IRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-WLL 174

Query: 62  GRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
           G   +I   + L+   + +F F   + KD+PD+EGD+++ + T  + LGK+ V
Sbjct: 175 GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAV 227

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 1   MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYV 60
           + G   LLL  +L  L G  YS   P LR K    +  L + +  GL  L        Y 
Sbjct: 89  LLGPLLLLLG-LLGLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGA-----YA 139

Query: 61  LGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVGVSTL 119
           +G    I  PL+L+   + + +    L  D+ DVEGD+K G+ TL V LG+++      
Sbjct: 140 VGG--DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYA 196

Length = 259

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 1   MSGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYV 60
           + G P   L  I+  + G  YS+     R K       L + +   L+ L   ++  Q  
Sbjct: 100 VIGGPKFALIFIIPLILGILYSVFF-KRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLT 158

Query: 61  LGRPFVITRPLILMGAIMSIFAF----VNGLLKDLPDVEGDKKFGMNTLCVLLGKEK 113
           +    ++           ++F F    +  ++ D+ D+EGD+K G+ TL ++LGKE+
Sbjct: 159 IFSLLLL----------YAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKER 205

Length = 285

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 7   LLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFV 66
           LLLN + F L   A  L L +   K  TF+  L L       GL               +
Sbjct: 112 LLLNPLAFLLSLAALVLALAYPFLKRFTFLPQLVL---GLAFGLGALA---GAAAVGGSL 165

Query: 67  ITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114
                +L+ A +        ++  + D+EGD+K G+ +L VL G +K 
Sbjct: 166 PLLAWLLLLAAILWTLG-YDIIYAIQDIEGDRKAGLKSLPVLFGIKKA 212

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 33/126 (26%)

Query: 12  ILFFLCGCAYSL---PLPFL--------------RWKSHTFMAPLCLVITMGLTGLPFYM 54
           IL F+ G   +    PL FL              + K +  +  L +    G+T   F  
Sbjct: 89  ILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMT-FIF-- 145

Query: 55  HTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL----LKDLPDVEGDKKFGMNTLCVLLG 110
                 +G        +IL+ A     AF+  L    +KD+ DVEGD+  G  TL +L G
Sbjct: 146 --GGIAVGELNEA---VILLAA----MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYG 196

Query: 111 KEKVGV 116
           ++  G 
Sbjct: 197 EKIAGR 202

Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.96
PRK13595	292	ubiA prenyltransferase; Provisional	99.74
PRK13105	282	ubiA prenyltransferase; Reviewed	99.71
PRK12872	285	ubiA prenyltransferase; Reviewed	99.68
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.68
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.67
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.67
PLN00012	375	chlorophyll synthetase; Provisional	99.64
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.62
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.59
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.58
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.58
PRK12875	282	ubiA prenyltransferase; Reviewed	99.56
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.55
PLN02922	315	prenyltransferase	99.55
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.52
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.51
PRK13591	307	ubiA prenyltransferase; Provisional	99.5
PRK05951	296	ubiA prenyltransferase; Reviewed	99.49
PRK12884	279	ubiA prenyltransferase; Reviewed	99.47
PRK12882	276	ubiA prenyltransferase; Reviewed	99.45
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.4
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.38
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.32
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.31
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.24
PRK13106	300	ubiA prenyltransferase; Reviewed	99.18
PRK12888	284	ubiA prenyltransferase; Reviewed	99.17
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.17
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.14
PRK12895	286	ubiA prenyltransferase; Reviewed	99.12
PRK13592	299	ubiA prenyltransferase; Provisional	99.04
PRK12874	291	ubiA prenyltransferase; Reviewed	99.0
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	98.98
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.98
PRK12886	291	ubiA prenyltransferase; Reviewed	98.97
PRK12876	300	ubiA prenyltransferase; Reviewed	98.94
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	98.88
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.86
PRK12871	297	ubiA prenyltransferase; Reviewed	98.81
PRK12873	294	ubiA prenyltransferase; Reviewed	98.61
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	98.6
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	98.59
PRK04375	296	protoheme IX farnesyltransferase; Provisional	98.43
PRK13362	306	protoheme IX farnesyltransferase; Provisional	98.3
PRK08238	479	hypothetical protein; Validated	95.81
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	94.38
KOG4581	359	consensus Predicted membrane protein [Function unk	91.53
PLN02776	341	prenyltransferase	83.38

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=2.2e-40  Score=283.54  Aligned_cols=158  Identities=37%  Similarity=0.674  Sum_probs=149.9

Q ss_pred             CcchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHH
Q 031353            2 SGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSI   80 (161)
Q Consensus         2 ~~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (161)
                      .|++++++++..++++|++||+|+||+||||+|+++++|+.++|++ +++|+|.|+++++++++..+++++++.++++++
T Consensus        88 ~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~  167 (280)
T PLN02878         88 VGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCF  167 (280)
T ss_pred             HChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHH
Confidence            4677899999999999999999999999999999999999999999 999999999999999988888899999889999


Q ss_pred             HHHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH--Hhhhchhhhhhhhccccc--ccccccc
Q 031353           81 FAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL--RMCSYSWGFLVFHDKQAC--HHNWPQH  152 (161)
Q Consensus        81 fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~--~~~~~~~~~~~~~~g~~~--~~~~~~~  152 (161)
                      |+.+++++||+||+||||++|+||+|+++|+|++   |.+++.+ |+.+++  ++++..|+++.+.+||+.  ..+|.|+
T Consensus       168 f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs  247 (280)
T PLN02878        168 FSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRA  247 (280)
T ss_pred             HHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999   9999999 998877  888889999999999999  9999999


Q ss_pred             ccccccc
Q 031353          153 TCFDFVD  159 (161)
Q Consensus       153 ~~~~~~~  159 (161)
                      +.+|+.+
T Consensus       248 ~~vD~~s  254 (280)
T PLN02878        248 QSVDLSS  254 (280)
T ss_pred             HhcCccc
Confidence            9999865

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.96  E-value=1.9e-29  Score=216.97  Aligned_cols=155  Identities=27%  Similarity=0.430  Sum_probs=138.8

Q ss_pred             cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031353            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF   81 (161)
Q Consensus         3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f   81 (161)
                      .|++.++..+++++++++||.  ||+|+||+|+++++|++.++|+ +++|.+.|.++. .+++..+++++++++++..++
T Consensus       118 ~~~~~~~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  194 (308)
T PRK12887        118 LGPWLLITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVF  194 (308)
T ss_pred             HhHHHHHHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHH
Confidence            467888889999999999995  9999999999999999999999 899998876643 455567788888999999999


Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH--Hhhhchhhhhhhhccccc--cccccccc
Q 031353           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL--RMCSYSWGFLVFHDKQAC--HHNWPQHT  153 (161)
Q Consensus        82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~--~~~~~~~~~~~~~~g~~~--~~~~~~~~  153 (161)
                      +.+++++||+||+||||+.|+||+|+++|+|++   |++++.+ |+..++  +.....+++..+..||..  .++|.|++
T Consensus       195 ~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (308)
T PRK12887        195 TFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQ  274 (308)
T ss_pred             HHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999   8888888 988777  677788888889999999  99999999


Q ss_pred             ccccccC
Q 031353          154 CFDFVDS  160 (161)
Q Consensus       154 ~~~~~~~  160 (161)
                      .+|+-|.
T Consensus       275 ~~~~~~~  281 (308)
T PRK12887        275 RVDLQDK  281 (308)
T ss_pred             hcCcccc
Confidence            9998764

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.74  E-value=2.2e-17  Score=142.52  Aligned_cols=97  Identities=26%  Similarity=0.371  Sum_probs=71.8

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      ++..+....++++++++||.  ||+|+|++|+++++|.. .-++ +..+      ..+.+.+.   ....+  ....+++
T Consensus       117 ~~~~~~l~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~~-~~g~p~~~~------~~~~g~~~---~~~~l--~a~~~w~  182 (292)
T PRK13595        117 PPAATLLLLLYAALFVGYSL--PPLRFKARPFLDGLSNA-AYALPLALP------ALALGAPV---PWPPL--LALMAWS  182 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHcc--CccchhcCcchhHHHHH-HHHHHHHHH------HHHcCCcc---hHHHH--HHHHHHH
Confidence            34555666788899999995  99999999999999953 3343 2222      12233321   21222  2334677


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      .+.+++||+||+||||+.|+||+|+++|+|++
T Consensus       183 ~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a  214 (292)
T PRK13595        183 VGKHAFDAAQDIPADRAAGTRTVATTLGVRGT  214 (292)
T ss_pred             HHHHHHHhccChHhHHHcCCeechHHhCcHhH
Confidence            99999999999999999999999999999999

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.71  E-value=1e-16  Score=137.35  Aligned_cols=102  Identities=22%  Similarity=0.279  Sum_probs=80.2

Q ss_pred             cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031353            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF   81 (161)
Q Consensus         3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f   81 (161)
                      ++|+.++...++++.++.||.  ||.|+|++|+.++++.+..-.. ..+|.+.      .+.  .++.+.+..+....++
T Consensus       103 ~~~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~------~~~--~~~~~~~l~~~~~~~~  172 (282)
T PRK13105        103 GSWASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGLVL------AGA--PFTAALWAVLAAFFLW  172 (282)
T ss_pred             hhHHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHHHH------hhc--cccHHHHHHHHHHHHH
Confidence            356666777799999999995  9999999999998665544433 3333321      122  2344567777888888


Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +.+++++||+||+||||+.|+||+|+++|+|++
T Consensus       173 ~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a  205 (282)
T PRK13105        173 GMASHAFGAVQDVVADREAGIASIATVLGARRT  205 (282)
T ss_pred             HHHHHHHHhCcchHhHHHcCCccchHHhcHHHH
Confidence            999999999999999999999999999999999

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.68  E-value=4.2e-16  Score=130.46  Aligned_cols=102  Identities=30%  Similarity=0.499  Sum_probs=82.2

Q ss_pred             cchHHHHHHHHHHHHHHHhcCCCCcc-ccccchhhhHHHHHHHhhh-h-hhHHHHhHHHHhhcCCCCChHHHHHHHHHHH
Q 031353            3 GSPPLLLNQILFFLCGCAYSLPLPFL-RWKSHTFMAPLCLVITMGL-T-GLPFYMHTQQYVLGRPFVITRPLILMGAIMS   79 (161)
Q Consensus         3 ~s~~l~~~~~l~l~lg~~YS~~~PPl-RlKr~p~la~l~I~~v~gl-v-~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (161)
                      ++++.++..+++.++++.||.  ||. |+||.|.+++.++....|. . ..+++..      +  ..++.+.+..+++..
T Consensus       102 ~~~~~~~~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~------~--~~~~~~~~~~~~~~f  171 (285)
T PRK12872        102 GGPKFALIFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY------Q--LTIFSLLLLYAVFIF  171 (285)
T ss_pred             ccHHHHHHHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc------c--cccchHHHHHHHHHH
Confidence            467777788889999999995  666 6999999999999988877 3 3343321      1  123445566677777


Q ss_pred             HHHHHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           80 IFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        80 ~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +..+..+++||+||+||||+.|+||+|+++|+|++
T Consensus       172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t  206 (285)
T PRK12872        172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERT  206 (285)
T ss_pred             HHHHHHHHHHhcccchhHHHcCCcccchhcchHHH
Confidence            88899999999999999999999999999999999

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.68  E-value=2.8e-16  Score=132.38  Aligned_cols=108  Identities=21%  Similarity=0.341  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh--hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL--TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl--v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      +..+...+++++++++||.  ||+|+||++++++..+...-+.  +..++      .+.+ +  ++.+.++.+..+++++
T Consensus       106 ~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~------~~~~-~--~~~~~~~~~~~~~l~~  174 (283)
T TIGR01476       106 WLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGH------AIFA-P--LTWQSVVVALIYSLGA  174 (283)
T ss_pred             HHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHH------HHhC-C--CCHHHHHHHHHHHHHH
Confidence            3435555678889999995  9999999998887654443222  22222      1122 2  3444567778888999


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YD  123 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~  123 (161)
                      ++++..||++|+||||+.|+||+|+++|+|++   +..++.+ |.
T Consensus       175 ~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~  219 (283)
T TIGR01476       175 HGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQA  219 (283)
T ss_pred             HHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999   4444444 53

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.67  E-value=6.7e-16  Score=132.50  Aligned_cols=101  Identities=21%  Similarity=0.299  Sum_probs=78.1

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      +++.++..+++++++++||.  ||+|+||++++++..+...-+. ...+.  +   .+.   .+++...+..++.+.+++
T Consensus       127 ~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~~~~~~~~--~---a~~---g~~~~~~~l~~~~~~l~~  196 (306)
T TIGR02056       127 FPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASYIALPWWAG--H---ALF---GELNPDIAVLTLIYSIAG  196 (306)
T ss_pred             chHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHHHHHHHHHH--H---HHh---CCCcHHHHHHHHHHHHHH
Confidence            45666677788999999996  9999999999988664443332 11111  1   112   234455677888888999


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      .++++.||++|+||||+.|+||+|+++|+|++
T Consensus       197 ~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a  228 (306)
T TIGR02056       197 LGIAIVNDFKSVEGDRALGLQSLPVAFGIETA  228 (306)
T ss_pred             HHHHHHHHccChHHHHHcCCcCcchhcChHHH
Confidence            99999999999999999999999999999999

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.67  E-value=5.4e-16  Score=135.27  Aligned_cols=100  Identities=20%  Similarity=0.334  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 031353            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF   83 (161)
Q Consensus         5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~   83 (161)
                      +.+++..+++++++++||.  ||+|+||+++++...+...-+. ...+.     ..+.+   .++.+.+++++...+++.
T Consensus       125 ~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~~~~~~~~-----~a~~g---~~~~~~~~l~~~~~l~~~  194 (331)
T PRK12392        125 MVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFITFLSA-----NALFS---DIRPEVVWLAGLNFFMAI  194 (331)
T ss_pred             HHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHHHHHHHHH-----HHHhc---CCCHHHHHHHHHHHHHHH
Confidence            3445556688999999996  9999999998876653332232 11111     12233   244556677788888999


Q ss_pred             HHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        84 ~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +.+++||+||+||||+.|+||+|+++|+|++
T Consensus       195 ~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a  225 (331)
T PRK12392        195 ALIIMNDFKSVEGDKEGGLKSLTVMIGAKNT  225 (331)
T ss_pred             HHHHHHcccchhhHHHcCCeeeEeEEcHhhH
Confidence            9999999999999999999999999999999

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.64  E-value=1.4e-15  Score=134.87  Aligned_cols=109  Identities=23%  Similarity=0.379  Sum_probs=79.5

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhhhhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF   83 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~glv~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~   83 (161)
                      ++..++..+++++++++||.  ||+++||++++++..+-..-+.  ++++..  ..+.+   .++...+.+++++.+++.
T Consensus       196 ~~~~~~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~~~--lp~~~g--~a~~g---~~s~~~illal~~~l~~l  266 (375)
T PLN00012        196 FPIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYIS--LPWWAG--QALFG---TLTPDVVVLTLLYSIAGL  266 (375)
T ss_pred             cHHHHHHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHHHH--HHHHHH--HHHcC---CCCHHHHHHHHHHHHHHH
Confidence            34445555678889999996  9999999999988664333322  122111  11222   344556777888889999


Q ss_pred             HHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH
Q 031353           84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ  121 (161)
Q Consensus        84 ~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~  121 (161)
                      +++++||++|+||||+.|++|+|+++|+|++   +..++.+
T Consensus       267 ai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l  307 (375)
T PLN00012        267 GIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDI  307 (375)
T ss_pred             HHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999   4444444

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.62  E-value=5.2e-15  Score=124.87  Aligned_cols=114  Identities=23%  Similarity=0.205  Sum_probs=85.9

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      +++.++..+++++++++||.  ||.|+|+++ ++...+....|. ...+-+. .++      ..++.+.++.++...+++
T Consensus       112 ~~~~~~~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~~~~~~~~-~~~------~~~~~~~~~~~l~~~l~~  181 (293)
T PRK06080        112 GWWLLLLGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLVIVLGTYY-LQA------GTVDSAVFLPALPCGLLI  181 (293)
T ss_pred             hHHHHHHHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHHHHHHHHH-Hhc------CCCCHHHHHHHHHHHHHH
Confidence            45666777788999999995  999999988 677666655665 3333221 121      234456788889999999


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL  127 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~  127 (161)
                      ..+.+.||++|+||||+.|+||+|+++|+|++   +..+..+ |...+.
T Consensus       182 ~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~  230 (293)
T PRK06080        182 GAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVL  230 (293)
T ss_pred             HHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998   4444444 654444

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.59  E-value=1e-14  Score=126.00  Aligned_cols=115  Identities=16%  Similarity=0.088  Sum_probs=90.7

Q ss_pred             cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031353            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF   81 (161)
Q Consensus         3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f   81 (161)
                      .+|+++...++|+++++.||.  ||+|+|++| +|-..+...-|. ...|-+ +.|+      ..++...+..++.+.+.
T Consensus       117 ~g~~~l~ig~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~-yv~t------~~~~~~~~~~sl~~gll  186 (304)
T PRK07419        117 SDWTVLGLVLLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPLAVAAAL-YSQT------PSWSLIPLAASIILGLA  186 (304)
T ss_pred             hcHHHHHHHHHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHHHHHHHH-HHhc------CCCCHHHHHHHHHHHHH
Confidence            468888888899999999996  999999999 687776666666 444433 2222      34556678888999999


Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031353           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL  127 (161)
Q Consensus        82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~  127 (161)
                      +..+...|+++|+|.||+.|.||+|+++|+|++   ...+... |...+.
T Consensus       187 ~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~  236 (304)
T PRK07419        187 TSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELL  236 (304)
T ss_pred             HHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999   4444444 655444

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.58  E-value=1.3e-14  Score=125.05  Aligned_cols=102  Identities=23%  Similarity=0.349  Sum_probs=78.1

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh--hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL--TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF   81 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl--v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f   81 (161)
                      +++.++..+++++++++||.  ||+++||++++++..+....+.  ...|..      +.+ +..++...++.+..+.+.
T Consensus       131 ~~~~~~l~l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~------~~~-~~~~~~~~~l~~~~~~l~  201 (314)
T PRK07566        131 GPWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAA------AFG-AGLPSWPIVILALLYSLG  201 (314)
T ss_pred             ChHHHHHHHHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHHHH------Hhc-cCCCCHHHHHHHHHHHHH
Confidence            45556666688889999996  9999999999887765554432  233322      122 123445567777888888


Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +.+++..||++|+|+||+.|+||+|+++|+|++
T Consensus       202 ~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a  234 (314)
T PRK07566        202 AHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNA  234 (314)
T ss_pred             HHHHHHHHHHHHhHhHHHcCCcccceeEcHHHH
Confidence            999999999999999999999999999999988

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.58  E-value=1.8e-14  Score=123.18  Aligned_cols=115  Identities=15%  Similarity=0.047  Sum_probs=90.0

Q ss_pred             cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031353            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF   81 (161)
Q Consensus         3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f   81 (161)
                      .+|+++...+++++.++.||.  ||+++|++| +|-..+....|. ...|-+ +.|+      ..++.+.+..++...+.
T Consensus       104 ~~~~~l~lg~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~-yvqt------~~~~~~~~l~sl~~gl~  173 (285)
T TIGR02235       104 WQITVLALVGLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAAL-YAQS------QSFSLIPWKASILVGLA  173 (285)
T ss_pred             hhHHHHHHHHHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHH-HHhC------CcCcHHHHHHHHHHHHH
Confidence            357788888899999999996  999999999 577776666666 333332 2232      34556678889999999


Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031353           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL  127 (161)
Q Consensus        82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~  127 (161)
                      +..+...|+++|+|.||+.|.||+|+++|+|++   ...++.. |...+.
T Consensus       174 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~  223 (285)
T TIGR02235       174 TTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLI  223 (285)
T ss_pred             HHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999   4444444 654444

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.56  E-value=6.6e-14  Score=119.80  Aligned_cols=93  Identities=22%  Similarity=0.333  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 031353            9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL   87 (161)
Q Consensus         9 ~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i   87 (161)
                      ..++..++++++||.  ||+|+|++|+.+..+ ..+-.+ +..+++.  +    .  ..+++..++++.  .+++.++++
T Consensus       117 ~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~-~g~~~~~~~~~y~~--~----t--g~~~~~~l~~a~--~l~~~~~~~  183 (282)
T PRK12875        117 PALLAFLVLSVEYSA--PPLRFKTTPVLDSLS-NGLYILPGVAAYAL--V----S--GSLPPLLAVAGG--WLWAMGMHT  183 (282)
T ss_pred             HHHHHHHHHHHHHcC--CCccchhccHHHHHH-HHHHHHHHHHHHHH--H----c--CCCcHHHHHHHH--HHHHHHHHH
Confidence            344567899999996  999999999877543 111112 2233321  1    1  234555444444  478999999


Q ss_pred             HhcCCChhhhHhcCCccchhhhchhHH
Q 031353           88 LKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        88 ~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +||++|+|+||+.|+||+|+++|+|++
T Consensus       184 in~i~Die~D~~aGi~Tlav~lG~~~a  210 (282)
T PRK12875        184 FSAIPDIEPDRAAGIRTTATVLGERRT  210 (282)
T ss_pred             HHhccCHHHHHHcCCccchhhccHhhH
Confidence            999999999999999999999999998

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.55  E-value=3.8e-14  Score=122.74  Aligned_cols=121  Identities=18%  Similarity=0.098  Sum_probs=86.2

Q ss_pred             cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHh-------hcCC-----CCCh-
Q 031353            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYV-------LGRP-----FVIT-   68 (161)
Q Consensus         3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~-------~~~~-----~~~~-   68 (161)
                      .+|+++...++++++++.||.  ||+++|++| +|...+....|. ...|-+. .|+.-       ++++     ..++ 
T Consensus       112 ~g~~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~v~g~~y-v~t~~~~~~~~~~~~~~~~~~~~~~~  187 (317)
T PRK13387        112 TSWLLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGIFLLAVY-INTNTITIESLLFQGEMFTIQGNLIA  187 (317)
T ss_pred             hcHHHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHHHHHHHH-HhcCCCchHHHHhcccchhhcchhHH
Confidence            457778788899999999996  999999999 898877777776 4444321 22210       1100     0000 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031353           69 -RPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL  127 (161)
Q Consensus        69 -~~l~~~~~~~~~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~  127 (161)
                       -+++..++...+....++..|+++|+|+||+.|.||+|+++|+|++   ...+... |...+.
T Consensus       188 ~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~  251 (317)
T PRK13387        188 IIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAV  251 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHH
Confidence             0123478888889999999999999999999999999999999999   3333333 654333

>PLN02922 prenyltransferase

Probab=99.55  E-value=4.7e-14  Score=122.33  Aligned_cols=121  Identities=18%  Similarity=0.261  Sum_probs=88.6

Q ss_pred             cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhh-cCCC---CChHHHHHHHHH
Q 031353            3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVL-GRPF---VITRPLILMGAI   77 (161)
Q Consensus         3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~-~~~~---~~~~~l~~~~~~   77 (161)
                      ++|++++..++|++.++.||.  ||+++|++| +|=..+...-|. ...|.| +.|+..+ +.+.   .++.+.+..++.
T Consensus       121 ~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l~v~g~y-~~~~~~~~~~~~~~~~~~~~~~l~slp  196 (315)
T PLN02922        121 GNIRVILLLAAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPLATTAFY-LALASGAGGSEMAILPLTPTVLSASVL  196 (315)
T ss_pred             cChHHHHHHHHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHHHHHHHH-HHhcccccccccccccccHHHHHHHHH
Confidence            568888888899999999996  999999999 554444444454 334433 2232101 1111   245567889999


Q ss_pred             HHHHHHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031353           78 MSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL  127 (161)
Q Consensus        78 ~~~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~  127 (161)
                      +.+.+..+...|+++|+|.||+.|.||+|+++|+|++   ..+++.. |...+.
T Consensus       197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~  250 (315)
T PLN02922        197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAA  250 (315)
T ss_pred             HHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999   4444444 654444

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.52  E-value=1.3e-13  Score=117.95  Aligned_cols=112  Identities=17%  Similarity=0.146  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 031353            6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV   84 (161)
Q Consensus         6 ~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~   84 (161)
                      +++...+++++.++.||.  ||+|+|+++ +|-..+....|. ...|-+. .|+      ..++...+..++...+.+..
T Consensus       110 ~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g~~y-vq~------~~~~~~~ll~sl~~g~l~~~  179 (284)
T TIGR00751       110 WFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLGTQY-LQA------HRVDWVGILPAVATGLLACA  179 (284)
T ss_pred             HHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHHHHH-Hhc------CCCCHHHHHHHHHHHHHHHH
Confidence            556666789999999996  999999999 787777777766 4444432 232      23445556778888899999


Q ss_pred             HHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031353           85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL  127 (161)
Q Consensus        85 i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~  127 (161)
                      ++..|+++|+|+||+.|.||+|+++|+|++   ..+++.. |...+.
T Consensus       180 il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~  226 (284)
T TIGR00751       180 VLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFV  226 (284)
T ss_pred             HHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999   4444444 644443

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.51  E-value=4.3e-14  Score=114.03  Aligned_cols=100  Identities=36%  Similarity=0.516  Sum_probs=82.3

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      +++.+...+++.+++++||   ||+|+||++++++.++....++ ...|.+.      .+  ..++.+.+..+.+..++.
T Consensus        91 ~~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~  159 (257)
T PF01040_consen   91 GPWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AG--GDPPPPPFLLAIFFFLLI  159 (257)
T ss_pred             CchhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cC--CcccHHHHHHHHHHHHHH
Confidence            4566666778888889999   9999999999999998888777 6666543      12  123455677777778889


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +.+...+|++|+||||+.|.||+|+++|+|++
T Consensus       160 ~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~  191 (257)
T PF01040_consen  160 FAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKA  191 (257)
T ss_pred             HHHHHHHHhhhHHHHHHcCCcchHHHHHHHHH
Confidence            99999999999999999999999999999999

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.50  E-value=1.9e-13  Score=118.93  Aligned_cols=109  Identities=27%  Similarity=0.275  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhcCC--CC--ccccccchhhhHHHHHHHhhhhhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 031353           11 QILFFLCGCAYSLP--LP--FLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNG   86 (161)
Q Consensus        11 ~~l~l~lg~~YS~~--~P--PlRlKr~p~la~l~I~~v~glv~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~   86 (161)
                      .+++.+.++.||.-  .+  |+|+|+.+.++++.+....|.+..|..   ...  .  ..+. +...+.++.....++++
T Consensus       125 ~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~---g~~--~--~~~~-~~~~i~l~~~~~l~~~~  196 (307)
T PRK13591        125 AFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA---GSY--C--GSLI-PVGLIFLFFGVKLFINS  196 (307)
T ss_pred             HHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHH---Hhh--h--hhHH-HHHHHHHHHHHHHHHHH
Confidence            46888899999951  11  459999999999998888886222211   100  0  0111 11233334444557888


Q ss_pred             HHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031353           87 LLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL  127 (161)
Q Consensus        87 i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~  127 (161)
                      ++||++|+||||+.|.||+|+++|+|++   ..++..+ |+..+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~  241 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGI  241 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999   4444444 544444

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.49  E-value=2.4e-13  Score=116.10  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=78.4

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      +++.+...++++++++.||.  ||+|+|+.+ +|-..+....|. ..+|.+.. ++.      .++.+.+..+....+.+
T Consensus       115 ~~~~l~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~~~vlg~~~~-~~~------~~~~~~~~~sl~~~l~~  184 (296)
T PRK05951        115 GIGAVTLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSHMLVMGLIYV-WLG------NLSSPNLLAGVPLGLLM  184 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHHHHHHHHHHH-HhC------cccHHHHHHHHHHHHHH
Confidence            45566666789999999996  999999876 777666666665 55554422 221      22344566777788888


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      ..+...|+++|+|+||+.|+||+|+++|+|++
T Consensus       185 ~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a  216 (296)
T PRK05951        185 ALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA  216 (296)
T ss_pred             HHHHHHCCCccchhHHHCCCeeeeeeEcHhhH
Confidence            89999999999999999999999999999999

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.47  E-value=4.5e-13  Score=112.24  Aligned_cols=97  Identities=27%  Similarity=0.422  Sum_probs=75.2

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      |+..++..+++++++++||.     ++||++++++.++....++ ...|...      .+.+   +.+.+.+.....+++
T Consensus       103 ~~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~------~~~~---~~~~~~l~~~~~~~~  168 (279)
T PRK12884        103 SPLAFLVVILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA------VGEL---NEAVILLAAMAFLMT  168 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH------hCCC---chHHHHHHHHHHHHH
Confidence            45555666778889999994     8999999998888777776 5555431      1211   123455566667788


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      .+.++.||++|+||||+.|+||+|+++|+|++
T Consensus       169 ~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~  200 (279)
T PRK12884        169 LGREIMKDIEDVEGDRLRGARTLAILYGEKIA  200 (279)
T ss_pred             HHHHHHHHhhhhhhHHHcCCeeechHhcHHHH
Confidence            88899999999999999999999999999999

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.45  E-value=6e-13  Score=111.81  Aligned_cols=97  Identities=22%  Similarity=0.253  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 031353            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF   83 (161)
Q Consensus         5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~   83 (161)
                      +..++...++++++++||.     |+||+|.+++.++....|. ...|...      .+.. . +.+.+.+.....+..+
T Consensus       105 ~~~~~~~~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~------~~~~-~-~~~~~~l~~~~fl~~~  171 (276)
T PRK12882        105 PLCLAIALFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA------VGTE-G-LLALLVLFALAALATL  171 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH------hccc-c-hHHHHHHHHHHHHHHH
Confidence            3334445567778999995     9999999999887777775 4445321      2211 1 1222344445555677


Q ss_pred             HHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        84 ~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +.+++||+||+||||+.|+||+|+++|+|++
T Consensus       172 ~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t  202 (276)
T PRK12882        172 AREIIKDVEDIEGDRAEGARTLPILIGVRKA  202 (276)
T ss_pred             HHHHHhhhhhhhhHHHcCCccccHHhhHHHH
Confidence            8899999999999999999999999999999

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.40  E-value=2.9e-12  Score=108.46  Aligned_cols=96  Identities=25%  Similarity=0.343  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 031353            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF   83 (161)
Q Consensus         5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~   83 (161)
                      +..++....++++.++|.      ++||.+.+++.++..+.++ ...|+...     .+   ..+.+.+++.+...+++.
T Consensus       116 ~~~~~l~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~~a~-----~~---~~~~~~~~l~~~~~l~~~  181 (289)
T COG0382         116 PLAFLLSLAALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGAAAV-----GG---SLPLLAWLLLLAAILWTL  181 (289)
T ss_pred             HHHHHHHHHHHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHHHHH-----hC---ccchHHHHHHHHHHHHHH
Confidence            334566678999999994      9999999999998888888 77776432     22   244556788888899999


Q ss_pred             HHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        84 ~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +.+++||+||+||||+.|+||+|+.+|+|++
T Consensus       182 ~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a  212 (289)
T COG0382         182 GYDIIYAIQDIEGDRKAGLKSLPVLFGIKKA  212 (289)
T ss_pred             HHHHHHhccCccchHhcCCcchHHHhCchhH
Confidence            9999999999999999999999999999999

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.38  E-value=3.5e-12  Score=107.49  Aligned_cols=95  Identities=22%  Similarity=0.202  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 031353            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF   83 (161)
Q Consensus         5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~   83 (161)
                      +..+...+++.+++++||.     ++||++.+++..+....|. ...|....      +.  .. . .+.+.....+++.
T Consensus       104 ~~~~~l~~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~------~~--~~-~-~~~l~~~~f~~~~  168 (279)
T PRK09573        104 IYAFLIALLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV------FN--VL-R-IIILFLCAFFSTW  168 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH------cc--ch-H-HHHHHHHHHHHHH
Confidence            4444455577888999994     8999999999999888887 66665421      11  11 2 2334445556778


Q ss_pred             HHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        84 ~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      ++++.||+||+|+||+.|+||+|+++|+|++
T Consensus       169 ~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a  199 (279)
T PRK09573        169 SREIVKDIEDIEGDLKENVITLPIKYGIKKS  199 (279)
T ss_pred             HHHHHhhhhhhhhHHHCCCccccHHhhHHHH
Confidence            8999999999999999999999999999998

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.32  E-value=9.4e-12  Score=105.03  Aligned_cols=91  Identities=21%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 031353           12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKD   90 (161)
Q Consensus        12 ~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KD   90 (161)
                      .++.++.++|+      .+||+..++.+......+. +..|+..      .+.......+.+.+.....+++.+.+++||
T Consensus       112 ~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g~~a------~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~  179 (282)
T TIGR01475       112 PLVLLVLIIYP------YTKRFTFLCHYVLGSTYGLAPLAGWVA------VIGTISFFLVAWLLGIGVGFWIAGFDLIYA  179 (282)
T ss_pred             HHHHHHHHHHh------hHhccccccHHHHHHHHHHHHHHHHHH------HhCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666788998      4799999998876666666 6666532      111122112234556666778888999999


Q ss_pred             CCChhhhHhcCCccchhhhchhHH
Q 031353           91 LPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        91 i~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      ++|+||||+.|+||+|+++|+|++
T Consensus       180 ~~D~e~D~~~G~~tlpv~~G~~~a  203 (282)
T TIGR01475       180 IQDYEFDRKNGLHSIPARFGIKAA  203 (282)
T ss_pred             HhhHHhHHHcCCCchHHHhchHHH
Confidence            999999999999999999998888

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.31  E-value=2e-11  Score=102.67  Aligned_cols=96  Identities=19%  Similarity=0.317  Sum_probs=69.2

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      ++..+...+++.+++++|+.     |+||.+.+++..+..+.|. ...|...      .+ ...++  .+ ...+..++.
T Consensus       103 ~~~~~~~~~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a------~~-~~~~~--~~-~~~~~fl~~  167 (277)
T PRK12883        103 NIEAFLFALGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA------VG-RIGLA--GY-LAICAFLVN  167 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH------hc-cccHH--HH-HHHHHHHHH
Confidence            34445555677888999994     8999999898888888776 4444321      11 12222  11 122344456


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +.+++.||++|+||||+.|+||+|+++|+|++
T Consensus       168 ~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a  199 (277)
T PRK12883        168 VAREIMKDIEDIEGDKAKGAKTLPIIIGKKRA  199 (277)
T ss_pred             HHHHHHhhhhhhccHHHcCCcCcChHhcHHHH
Confidence            78899999999999999999999999999988

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.24  E-value=4.5e-11  Score=101.18  Aligned_cols=97  Identities=13%  Similarity=0.176  Sum_probs=70.3

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      ++..+...++++++.+.|+      -.||...++.......-++ ...|+..      ...  .++.+.+++.....+++
T Consensus       113 ~~~~~~~~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~l~~~~a------~~g--~~~~~~~~l~~~~~~w~  178 (285)
T PRK12847        113 NKTTIYLSFIAVILIVLYP------LMKRFFYWPQLFLGFTFNMGILMAFAA------VQN--QLDIEAILLYIGCIFWT  178 (285)
T ss_pred             hHHHHHHHHHHHHHHHhcc------ccccCCcccHHHHHHHHHHHHHHHHHH------HcC--CCcHHHHHHHHHHHHHH
Confidence            3455566667888899998      3888887776543333333 3344322      222  23344566777788899


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      .+.+++++++|+|+|++.|++|+|+++|+|++
T Consensus       179 ~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a  210 (285)
T PRK12847        179 IGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTR  210 (285)
T ss_pred             HHHHHHHHhccHhhHHHcCCchhHHHhccccH
Confidence            99999999999999999999999999999988

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.18  E-value=1.9e-10  Score=99.29  Aligned_cols=96  Identities=23%  Similarity=0.196  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 031353           12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKD   90 (161)
Q Consensus        12 ~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KD   90 (161)
                      .+++++...|+      .+||+..+++..+....++ +..|+..............++.+.+.+.....+++.+.+++||
T Consensus       125 ~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya  198 (300)
T PRK13106        125 PIVALIAMSYP------YMKRYTAFANYHLASIQGLAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNH  198 (300)
T ss_pred             HHHHHHHHHHh------HHhcCCcchHHHHHHHHHHHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677887      5899999999888888777 6667643211000000001112223334445668888999999


Q ss_pred             CCChhhhHhcCCccchhhhchhHH
Q 031353           91 LPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        91 i~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      ++|+|+||+.|+||+|+++| |++
T Consensus       199 ~~D~e~D~~~Gi~Slpv~~G-~~a  221 (300)
T PRK13106        199 IPDAEFDREMGLHSFAVVLG-KWA  221 (300)
T ss_pred             ccchhhHHHCCCCccHHHHh-hhH
Confidence            99999999999999999999 777

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.17  E-value=1.6e-10  Score=98.77  Aligned_cols=90  Identities=16%  Similarity=0.156  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 031353           11 QILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLK   89 (161)
Q Consensus        11 ~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~K   89 (161)
                      ..+++++..+|+      ..||+..++........++ ...|+..      ...  .++.+.+.+.+...+++.+.++++
T Consensus       114 ~~~~~~~~~~Y~------~~Kr~t~~~~~~lg~~~~~~~l~g~~a------~~g--~~~~~~~ll~~~~~~w~~~~~~i~  179 (284)
T PRK12888        114 APLAVAPLVVYP------YAKRFTNFPHAILGLAQAVGPVGAWIA------VTG--TWSWPAVLLGLAVGLWIGGFDLIY  179 (284)
T ss_pred             HHHHHHHHHHHH------HhhcccchhhHHHHHHHHHHHHHHHHH------HcC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            335566677897      6799888886665555555 5555432      112  233344566777788999999999


Q ss_pred             cCCChhhhHhcCCccchhhhchhHH
Q 031353           90 DLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        90 Di~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +++|.|+||+.|+||+|+++|+|++
T Consensus       180 a~~D~e~D~~~Gv~sl~v~~G~~~a  204 (284)
T PRK12888        180 ACQDAEVDRRIGVRSVPARFGVRAA  204 (284)
T ss_pred             HhhhHHHHHHCCCcCcchhhCchhH
Confidence            9999999999999999999999988

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.17  E-value=1.8e-10  Score=98.85  Aligned_cols=140  Identities=17%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 031353            6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV   84 (161)
Q Consensus         6 ~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~   84 (161)
                      ..+....+++++.++|+      .+||+..++........+. ...|+.     ++.++ .. +.+...+.....+++.+
T Consensus       115 ~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~l~g~~-----av~g~-~~-~~~~~~l~~~~~~W~~~  181 (289)
T PLN02809        115 YSRILGASSLLLVFTYP------LMKRFTFWPQAFLGLTFNWGALLGWA-----AVKGS-LD-PAVVLPLYASGVCWTLV  181 (289)
T ss_pred             HHHHHHHHHHHHHHHHh------HHHhcCcchHHHHHHHHHHHHHHHHH-----HHhCC-CC-hHHHHHHHHHHHHHHHH
Confidence            33445557778889998      4999999987653333333 333431     22232 12 12222234444456777


Q ss_pred             HHHHhcCCChhhhHhcCCccchhhhchhHH-HHH-HHHH-HHHHHHHhhhchhhhhhhhccccc--cccccccccccccc
Q 031353           85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKV-GVS-TLRQ-YDVSGLRMCSYSWGFLVFHDKQAC--HHNWPQHTCFDFVD  159 (161)
Q Consensus        85 i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~-~~~-ll~~-y~~ai~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~  159 (161)
                      -+++.+.+|+|+||+.|++|+|+++|+|+. .++ +... +..-+.+.....++.... .|+..  .++++|++.+|.-|
T Consensus       182 ~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~v~~~~  260 (289)
T PLN02809        182 YDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGWPYY-AGLAAAAGHLAWQIQTVDLSS  260 (289)
T ss_pred             HHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHHHHHHHcCCCC
Confidence            789999999999999999999999999965 222 2222 433222222112222222 23433  67899999999865

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.14  E-value=4.9e-10  Score=95.07  Aligned_cols=97  Identities=16%  Similarity=0.236  Sum_probs=70.0

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      ++..+...++++++.+.|+      .+||+..++.......-++ ...|++.     +-+   .++.+.+.+.....+++
T Consensus       108 ~~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g---~~~~~~~ll~~~~~lw~  173 (281)
T TIGR01474       108 NPLTILLGVASLALVATYP------FMKRITYWPQLVLGLAFGWGALMGWAA-----VTG---DLSTAAWVLYLANILWT  173 (281)
T ss_pred             hHHHHHHHHHHHHHHHHhc------hhcccccccHHHHHHHHHHHHHHHHHH-----HcC---CCcHHHHHHHHHHHHHH
Confidence            3445556668888899998      4999988876654433444 4455432     112   23333444555667788


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      .+.+++++++|+|+||+.|+||+|+++|+|++
T Consensus       174 ~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~  205 (281)
T TIGR01474       174 LGYDTIYAMQDKEDDIKIGVKSTALRFGDNTK  205 (281)
T ss_pred             HHHHHHHHHhhHHhHHHcCCCcccHHhhhhhH
Confidence            89999999999999999999999999999987

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.12  E-value=3.7e-10  Score=97.15  Aligned_cols=89  Identities=16%  Similarity=0.100  Sum_probs=64.5

Q ss_pred             HHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCC
Q 031353           14 FFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLP   92 (161)
Q Consensus        14 ~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KDi~   92 (161)
                      .+.+...|+      .+||...+....+-..-|. ...|+..      .+.+..++...+.+.+...+++.+-++++|.+
T Consensus       115 ~~~l~~~yp------~~KR~t~~~~~~lG~~~g~~~l~g~~A------v~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~q  182 (286)
T PRK12895        115 VIFLFIIDP------FLKRYTAWRHIYMGSIIGLGVLAGYLA------VIPAFPYNLLIYIIFISSSLWIAGFDIIYVIP  182 (286)
T ss_pred             HHHHHHHHH------HHHhCccccHHHHHHHHHhHHHHHHHH------HcCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            444444555      8999999988776666666 6666532      22222222223345556667888999999999


Q ss_pred             ChhhhHhcCCccchhhhchhHH
Q 031353           93 DVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        93 DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      |+|+||+.|+||+|+++|+|++
T Consensus       183 D~e~D~~~Gv~S~a~~fG~~~~  204 (286)
T PRK12895        183 DIEYDKINGLKTIMNTYGIKNG  204 (286)
T ss_pred             chhhHHHcCCCchHHHHCCccH
Confidence            9999999999999999999988

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.04  E-value=7e-10  Score=96.52  Aligned_cols=96  Identities=18%  Similarity=0.236  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHh-----cCCCCccccccchhhhHHHHHHHhhh-hhhH--HHH-hHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031353           11 QILFFLCGCAY-----SLPLPFLRWKSHTFMAPLCLVITMGL-TGLP--FYM-HTQQYVLGRPFVITRPLILMGAIMSIF   81 (161)
Q Consensus        11 ~~l~l~lg~~Y-----S~~~PPlRlKr~p~la~l~I~~v~gl-v~~G--~f~-~~~~~~~~~~~~~~~~l~~~~~~~~~f   81 (161)
                      .++.++..++|     +.     ++||.++.+|+.+..+.+. +++|  ++. -......+.|.. ....+.+++...+.
T Consensus       114 ~i~~~~i~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~-~~~~~~l~l~afl~  187 (299)
T PRK13592        114 NVGWFLFLYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLL-SLPTVLLAFTMYFP  187 (299)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchh-hHHHHHHHHHHHHH
Confidence            34566678999     87     9999999999999999998 6555  211 011122333221 11113455677778


Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +.+.|+.||+|| |||+++ .+|+|+++|+|++
T Consensus       188 ~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA  218 (299)
T PRK13592        188 SLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKA  218 (299)
T ss_pred             HHHHHHHHhhcC-CccccC-CeeechhccchhH
Confidence            899999999999 899975 9999999999998

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.00  E-value=3e-09  Score=91.26  Aligned_cols=89  Identities=22%  Similarity=0.249  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 031353           12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKD   90 (161)
Q Consensus        12 ~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KD   90 (161)
                      +..++...+|+      .+||+..++.......-++ ...|+..      .+.  ..+.+.+.+.....+++.+.+++++
T Consensus       123 ~~~~~~~~~Y~------~~KR~t~~~~~~~g~~~~~~~l~G~~a------v~g--~~~~~~~~l~~~~~~w~~~~~~~~a  188 (291)
T PRK12874        123 FPFLIVLGGYS------YFKRFSSLAHLVLGLSLGLAPIAGVVA------VLG--EIPLWSVFLALGVMFWVAGFDLLYS  188 (291)
T ss_pred             HHHHHHHHHHh------hhcccccccHHHHHHHHHHHHHHHHHH------HcC--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666788898      4899999988776666676 6667542      222  2333334555666789999999999


Q ss_pred             CCChhhhHhcCCccchhhhchhHH
Q 031353           91 LPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        91 i~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      ++|+|+||+.|++|+|+++|+|++
T Consensus       189 ~~D~~~D~~~Gi~slpv~~G~~~~  212 (291)
T PRK12874        189 LQDMEFDKKRGLHSIPSKFGEKAT  212 (291)
T ss_pred             hccHHHHHHcCCCcccHHhhhHhH
Confidence            999999999999999999999988

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=98.98  E-value=4.7e-09  Score=91.58  Aligned_cols=113  Identities=20%  Similarity=0.197  Sum_probs=85.9

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh--hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL--TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF   81 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl--v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f   81 (161)
                      +|.+++.-.++++.|+.|..  +|.++.+.| +|=+......|.  +...+|.  |      ...++...+..++...+.
T Consensus       120 ~~~~l~lG~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vffG~l~v~g~~yi--q------t~~~~~~~ll~slp~gil  188 (303)
T COG1575         120 DWLVLLLGLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFFGPLIVLGAYYI--Q------TGRLSWAILLPSLPVGIL  188 (303)
T ss_pred             hhHHHHHHHHHHHheeeecc--CCcCcccCC-HHHHHHHHHHHHHHHHHHHHH--h------cccchHHHHHHHHHHHHH
Confidence            45656777799999999995  999999999 665554444555  3333332  2      234556678889999999


Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031353           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL  127 (161)
Q Consensus        82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~  127 (161)
                      +..+...|.+.|+|-|++.|.+|+|+++|++++   ..+++.. |...+.
T Consensus       189 ~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~  238 (303)
T COG1575         189 IANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVI  238 (303)
T ss_pred             HHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999   3333333 654444

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.98  E-value=1.8e-09  Score=92.30  Aligned_cols=92  Identities=15%  Similarity=0.142  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 031353            9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL   87 (161)
Q Consensus         9 ~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i   87 (161)
                      +..+.++++.++|+      -.||...++........++ +..|+..      ...  .++.+.+.+.+...+++.+.++
T Consensus       119 ~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~l~g~~a------~~g--~~~~~~~~l~~~~~lw~~~~d~  184 (290)
T PRK12870        119 WLCVAAVPVIFLYP------LAKRVFPVPQLVLAIAWGFAVLISWSA------VTG--HLDLGTWLLWAATVFWTLGFDT  184 (290)
T ss_pred             HHHHHHHHHHHHhh------hhhhccccceeeehHHHHhHHHHHHHH------HcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            33445667788997      2677776766554444555 5555532      111  2334445666777889999999


Q ss_pred             HhcCCChhhhHhcCCccchhhhchhHH
Q 031353           88 LKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        88 ~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +++++|+|+|++.|++|+|+++|+|++
T Consensus       185 ~~a~~D~e~D~~~G~~slav~~G~~~~  211 (290)
T PRK12870        185 VYAMSDREDDLRIGVNSSAIFFGRYAP  211 (290)
T ss_pred             HHHhhhHhhHHHCCCcchhHHhccccH
Confidence            999999999999999999999999988

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=98.97  E-value=6.6e-09  Score=89.02  Aligned_cols=91  Identities=23%  Similarity=0.228  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 031353           10 NQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLL   88 (161)
Q Consensus        10 ~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~   88 (161)
                      ...+++++..+|+      .+||+..++........++ ...|+..      ....  ++.+.+.+.+...++..+.+++
T Consensus       116 l~~~~~~~~~~Y~------~~Kr~t~~~~~~~g~~~~~~~l~g~~a------~~g~--~~~~~~ll~~~~~lw~~~~~~~  181 (291)
T PRK12886        116 LSPPALFFLLLYS------YCKRFTALAHVVLGFCLALAPLGAWIA------IRGT--IELPAILLGLAVLFWVAGFDIL  181 (291)
T ss_pred             HHHHHHHHHHHHh------hhhccccccHHHHHHHHHHHHHHHHHH------HcCC--CcHHHHHHHHHHHHHHHHHHHH
Confidence            3345667788999      4799999987665555565 5555432      2222  2333455555666778888899


Q ss_pred             hcCCChhhhHhcCCccchhhhchhHH
Q 031353           89 KDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        89 KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      ++++|.|+||+.|+||+|+++|+|++
T Consensus       182 ~a~~D~e~D~~aGi~slpv~~G~~~~  207 (291)
T PRK12886        182 YALQDLEFDRKEGLHSIPAKLGVNGS  207 (291)
T ss_pred             HHhccHHhHHHcCCcCcchhcCchhH
Confidence            99999999999999999999999988

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=98.94  E-value=7.2e-09  Score=90.06  Aligned_cols=95  Identities=21%  Similarity=0.276  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChH--HHHHHHHHHHHHHHHH
Q 031353            9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITR--PLILMGAIMSIFAFVN   85 (161)
Q Consensus         9 ~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~--~l~~~~~~~~~fa~~i   85 (161)
                      +...+++++..+||      .+||+.++........-+. ...|+..     +.+++..+..  ..++.+....+...+-
T Consensus       120 ~l~~~~~~~~~iY~------~~KR~t~~~~~vLGl~~~~~~l~~~~A-----v~~~~~~~~l~~~~~lw~~~~~~~~~g~  188 (300)
T PRK12876        120 SLAVLSTLLMIIYP------YTKRVTFLCHWILGLVYYLAILMNFFA-----IIETPLSFSLFCMASLWGISFGMIIAAN  188 (300)
T ss_pred             HHHHHHHHHHHHHH------hHhcCCchhHHHHHHHHHHHHHHHHHH-----HhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            33446777788998      6999999887653333343 4444432     2222222110  1123333444455577


Q ss_pred             HHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        86 ~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +++++.+|+|+||+.|+||+|+++|++++
T Consensus       189 DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a  217 (300)
T PRK12876        189 DIIYAIQDLEFDRKEGLFSIPARFGEKKA  217 (300)
T ss_pred             HHHHHHcCHhhHHHcCCccchHHHCchhH
Confidence            89999999999999999999999999987

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=98.88  E-value=1.4e-08  Score=86.11  Aligned_cols=93  Identities=14%  Similarity=0.191  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 031353            8 LLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNG   86 (161)
Q Consensus         8 ~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~   86 (161)
                      ++..+++.++.++|+      -.||...++.+......|+ ...|+..      ...  .++.+.+.+.....++.....
T Consensus       114 ~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~g~~~~~g~~a------~~~--~~~~~~~~l~~~~~~w~~~~~  179 (282)
T PRK12848        114 IWLSVAALALAWIYP------FMKRYTHLPQVVLGAAFGWGIPMAFAA------VQG--SVPLEAWLLFLANILWTVAYD  179 (282)
T ss_pred             HHHHHHHHHHHHHHH------hHHhcCcccHHHHHHHHHHHHHHHHHH------HhC--CCcHHHHHHHHHHHHHHHHHH
Confidence            344456777789995      3677777776654455565 5555432      222  233444555555666777778


Q ss_pred             HHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           87 LLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        87 i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      ...+++|.|+||+.|++|+|+++|+|++
T Consensus       180 ~~~a~~D~e~D~~~G~~tlpv~~G~~~~  207 (282)
T PRK12848        180 TQYAMVDRDDDLKIGIKSTAILFGRYDK  207 (282)
T ss_pred             HHHHhccHhhHHHcCCccccHHhccccH
Confidence            8899999999999999999999999988

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.86  E-value=1.6e-08  Score=87.73  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      +++.+...++++++.+.|+      -.||+..++.......-++ ...|++.  +    .+.  ++.+.+.+.....++.
T Consensus       140 ~~~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~~Gl~~~~~~l~g~~a--~----~g~--~~~~~~~l~~~~~~w~  205 (314)
T PRK12878        140 NWFAIALGIASLAIVAAYP------FMKRITWWPQFFLGLAFSWGALMGWAA--H----FGS--LSLAAVLLYAGSIAWT  205 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHH------HHHhcCCcchHHHHHHHHHHHHHHHHH--H----hCC--CchHHHHHHHHHHHHH
Confidence            4555556667888899997      3888665653322222233 3345432  1    112  2223344445566678


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      .+.+.+++++|.|+||+.|++|+|+++|+|++
T Consensus       206 ~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~  237 (314)
T PRK12878        206 IGYDTIYAHQDKEDDALIGVKSTARLFGDHTK  237 (314)
T ss_pred             HHHHHHHHhhhHhhHHHcCCcccchHhchhhH
Confidence            88889999999999999999999999999988

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=98.81  E-value=3.8e-08  Score=84.84  Aligned_cols=48  Identities=23%  Similarity=0.325  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           67 ITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        67 ~~~~l~~~~~~~~~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      ++...+.......+++...+++||++|.|||++.|+||+|+++|++++
T Consensus       173 ~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t  220 (297)
T PRK12871        173 PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGT  220 (297)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHH
Confidence            344456666777778999999999999999999999999999999988

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=98.61  E-value=2.4e-07  Score=80.24  Aligned_cols=92  Identities=17%  Similarity=0.204  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 031353           11 QILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLK   89 (161)
Q Consensus        11 ~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~K   89 (161)
                      ..++++...+|+      -.||+-.+........-++ ...|+-.      ......+....+++.+...+++.+-+++.
T Consensus       123 ~~~~~~~~~~Y~------~~KR~t~~~~~vlg~~~a~~~l~gw~A------v~g~~~~~~~~l~l~~~~~~W~~~~d~iy  190 (294)
T PRK12873        123 AFLALPPILIYP------SAKRWFAYPQAILALCWGFAVLIPWAA------AEGSLNGGWPLLFCWLATLLWTFGFDTVY  190 (294)
T ss_pred             HHHHHHHHHHHH------HHHhccccchHHHHHHHHhHHHHHHHH------HhCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            335566778888      2788776665444344455 5556532      22222322233444456667888889999


Q ss_pred             cCCChhhhHhcCCccchhhhchhHH
Q 031353           90 DLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        90 Di~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +++|.|+|++.|++|+|+++|++..
T Consensus       191 A~qD~edD~~~Gv~slpv~~G~~~~  215 (294)
T PRK12873        191 AMADRRDDAKIGLNSSALSLGSNAL  215 (294)
T ss_pred             HHHhHhhHHHcCCcccchhcChhhH
Confidence            9999999999999999999998655

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=98.60  E-value=5.5e-07  Score=76.44  Aligned_cols=89  Identities=12%  Similarity=0.167  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh--hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 031353           12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL--TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLK   89 (161)
Q Consensus        12 ~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl--v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~K   89 (161)
                      +..++..++||.     ++||++++ +..+....|-  +..|+..      ..+.  ++.+.+.+.+...++..+.....
T Consensus       114 ~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~~a------~~g~--~~~~~~ll~~~~~~w~~~~~~~l  179 (279)
T PRK12869        114 LGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAGYAS------GTGS--LDLEAVLLSFLIYLWTPGHIWSL  179 (279)
T ss_pred             HHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHHHHH------HhCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            344567788884     89999974 6666666554  4444432      1222  33334555556666666666666


Q ss_pred             cCCChhhhHhcCCccchhhhchhHH
Q 031353           90 DLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        90 Di~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +.+|.|.|++.|+||+|+++|+|++
T Consensus       180 ~~~d~edd~~~G~~tlpv~~G~~~a  204 (279)
T PRK12869        180 ALKYREDYRRAGVPMLPAVVGEKTS  204 (279)
T ss_pred             HHHhHHhHHHcCCeecceeecHHHH
Confidence            7789999999999999999999988

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=98.59  E-value=2.5e-07  Score=78.17  Aligned_cols=93  Identities=15%  Similarity=0.059  Sum_probs=57.1

Q ss_pred             HHHHHHHHHH-HHHhcCCCCccccccchhhhHHHHHHHhhh--hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 031353            8 LLNQILFFLC-GCAYSLPLPFLRWKSHTFMAPLCLVITMGL--TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV   84 (161)
Q Consensus         8 ~~~~~l~l~l-g~~YS~~~PPlRlKr~p~la~l~I~~v~gl--v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~   84 (161)
                      .+...++.++ +++||.     .+||.+++ +..+....|.  +..|+..      ....  ++.+.+.+.....++...
T Consensus       108 ~~l~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~~a------~~g~--~~~~~~~l~~~~~~w~~~  173 (280)
T TIGR01473       108 ALLGLFGIFFYVIVYTI-----WLKRRTPQ-NTVIGGFAGAVPPLIGWAA------VTGS--ISLGAWLLFAIIFLWQPP  173 (280)
T ss_pred             HHHHHHHHHHHHhhcCh-----hhccCCch-hHHHHHHHHHHHHHHHHHH------hcCC--CCHHHHHHHHHHHHHHHH
Confidence            3333455544 889994     68998866 5555555543  4555432      1222  233334444444444444


Q ss_pred             HHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031353           85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        85 i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      -...-..+|.|.||+.|+||+|+++|+|++
T Consensus       174 ~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a  203 (280)
T TIGR01473       174 HFWALALKYKDDYRAAGIPMLPVVKGERIT  203 (280)
T ss_pred             HHHHHHHHhhhhHHHCCCccCCcccCHHHH
Confidence            333445678999999999999999999988

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=98.43  E-value=9.4e-07  Score=75.61  Aligned_cols=84  Identities=12%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             HHHHhcCCCCccccccchhhhHHHHHHHhh-h-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 031353           17 CGCAYSLPLPFLRWKSHTFMAPLCLVITMG-L-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDV   94 (161)
Q Consensus        17 lg~~YS~~~PPlRlKr~p~la~l~I~~v~g-l-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KDi~Di   94 (161)
                      ...+||.     ++||.+ +++..+..+.+ + +..|++.      ...  .++.+.+++.+...++.........++|.
T Consensus       127 ~~~~Ys~-----~lKr~~-~~~~~v~~~~g~~~~l~g~~a------~~g--~~~~~~~~l~~~~~lw~~~~~~~~~~~d~  192 (296)
T PRK04375        127 YVVVYTL-----WLKRRT-PQNIVIGGAAGAMPPLIGWAA------VTG--SLSWEALILFLIIFLWTPPHFWALAIFRK  192 (296)
T ss_pred             HHHHhcc-----chhcCC-ccchHHHHHHHHhHHHHHHHH------hCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4668883     899999 56777776654 4 5666542      222  23343455666666676666655556777


Q ss_pred             hhhHhcCCccchhhhchhHH
Q 031353           95 EGDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        95 eGDr~~Gi~Tl~v~lG~~~~  114 (161)
                      |.||+.|+||+|+++|+|++
T Consensus       193 ~D~~~~G~~tlpv~~G~~~~  212 (296)
T PRK04375        193 DDYAAAGIPMLPVVKGIRVT  212 (296)
T ss_pred             hhHHHcCCCccceeeCHHHH
Confidence            77899999999999999987

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=98.30  E-value=5.2e-06  Score=71.96  Aligned_cols=85  Identities=13%  Similarity=0.145  Sum_probs=64.6

Q ss_pred             HHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 031353           17 CGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVE   95 (161)
Q Consensus        17 lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KDi~Die   95 (161)
                      ...+|+.     ++||++++++.......++ ...|+..      .++.  ++...+.+...+.++...-...++++|.|
T Consensus       130 ~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G~~a------~~g~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~  196 (306)
T PRK13362        130 YVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVGYCA------VTGQ--FDAGALILLLMFSLWQMPHSYAIAIFRFN  196 (306)
T ss_pred             HHHHHhH-----HHhccCcHhHHHHHHHHHHHHHHHHHH------HcCC--CcHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            4678984     8999999887766666666 6777643      2222  23444666777777777777888888899


Q ss_pred             hhHhcCCccchhhhchhHH
Q 031353           96 GDKKFGMNTLCVLLGKEKV  114 (161)
Q Consensus        96 GDr~~Gi~Tl~v~lG~~~~  114 (161)
                      +|++.|++|+|++.|+|++
T Consensus       197 Dy~~aG~~~lpv~~G~~~t  215 (306)
T PRK13362        197 DYAAAGIPVLPVARGIAKT  215 (306)
T ss_pred             hHHHCCCeeeceecChHHH
Confidence            9999999999999999988

>PRK08238 hypothetical protein; Validated

Probab=95.81  E-value=0.023  Score=52.33  Aligned_cols=83  Identities=23%  Similarity=0.304  Sum_probs=59.4

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031353            4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA   82 (161)
Q Consensus         4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa   82 (161)
                      |+..+..++..+++..+||.     ++||.++++..++....++ +..|...      .+    .+.+-+++ .+..++.
T Consensus       294 ~~~~~~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~a------~~----~~~s~wll-~~~~~~~  357 (479)
T PRK08238        294 GPAFLLVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAAA------IG----VALSFWLL-AFSMFFF  357 (479)
T ss_pred             hHHHHHHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHHH------hc----cCHHHHHH-HHHHHHH
Confidence            34445566677788889994     9999999999988887777 7777532      22    22332333 2444567


Q ss_pred             HHHHHHhcCCChhhhHhcCC
Q 031353           83 FVNGLLKDLPDVEGDKKFGM  102 (161)
Q Consensus        83 ~~i~i~KDi~DieGDr~~Gi  102 (161)
                      ..+++.|...|++++++.|-
T Consensus       358 l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        358 LSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHHHhHHHHHHHHhcCC
Confidence            78899999999999999885

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=94.38  E-value=0.13  Score=44.66  Aligned_cols=43  Identities=21%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHH
Q 031353            5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPF   52 (161)
Q Consensus         5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~   52 (161)
                      +..++.....+++.++||.     ++||.|+++.++++...++ +..|.
T Consensus       115 ~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~G~  158 (295)
T PRK12324        115 PKLALVLLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIAGG  158 (295)
T ss_pred             HHHHHHHHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHHHH
Confidence            3334445677888899994     9999999999998777776 55554

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=91.53  E-value=0.16  Score=44.32  Aligned_cols=58  Identities=17%  Similarity=0.081  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhhchhHH--HHHHH-HH-H-HHHHHHhhhchhhhhhh
Q 031353           82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV--GVSTL-RQ-Y-DVSGLRMCSYSWGFLVF  139 (161)
Q Consensus        82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~--~~~ll-~~-y-~~ai~~~~~~~~~~~~~  139 (161)
                      +=+|.-.|.-.|.|.||+.||-|+++.+|+...  ...++ .+ | .+.|++.-.+.|-.++.
T Consensus       242 teailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~~lpl  304 (359)
T KOG4581|consen  242 TEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISFALPL  304 (359)
T ss_pred             hHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            334445688999999999999999999999988  44444 44 6 66676666666555443

>PLN02776 prenyltransferase

Probab=83.38  E-value=25  Score=31.47  Aligned_cols=79  Identities=9%  Similarity=0.080  Sum_probs=42.7

Q ss_pred             HHHhcCCCCccccccchhhhHHHHHHHhh-h-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH--HHH-HHhcCC
Q 031353           18 GCAYSLPLPFLRWKSHTFMAPLCLVITMG-L-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF--VNG-LLKDLP   92 (161)
Q Consensus        18 g~~YS~~~PPlRlKr~p~la~l~I~~v~g-l-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~--~i~-i~KDi~   92 (161)
                      ...|+      .+||+..+ +..+-.+.| + ...||..      .+.+..++  .+.+.+...++..  .-. ..+|  
T Consensus       113 ~~vYt------~lKR~t~~-~~~lG~~~Ga~ppL~Gw~A------vtg~~~~~--~~~Lf~~~~~Wq~pHf~~la~~~--  175 (341)
T PLN02776        113 AFVYT------PLKQIHPA-NTWVGAVVGAIPPLMGWAA------ASGQLDAG--AMVLAAALYFWQMPHFMALAYMC--  175 (341)
T ss_pred             HHHHH------hHccCCch-hHHHHHHHHHHHHHHHHHH------HcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHh--
Confidence            34677      49999966 455455555 5 6666632      22223332  2333333333433  222 2333  


Q ss_pred             ChhhhHhcCCccchhhh--chhHH
Q 031353           93 DVEGDKKFGMNTLCVLL--GKEKV  114 (161)
Q Consensus        93 DieGDr~~Gi~Tl~v~l--G~~~~  114 (161)
                       -|-|++.|++.+|+.-  |++.+
T Consensus       176 -~dDy~~ag~pmlpv~~~~g~~ta  198 (341)
T PLN02776        176 -RDDYAAGGYRMLSLADATGRRTA  198 (341)
T ss_pred             -HHHHHhCCCcccCccccchHHHH
Confidence             3367899999999976  34444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00