Query 031354
Match_columns 161
No_of_seqs 136 out of 2046
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:54:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.9 7.9E-25 1.7E-29 165.2 9.2 81 72-157 204-285 (348)
2 PF13639 zf-RING_2: Ring finge 99.8 3.6E-21 7.9E-26 105.5 1.7 44 102-146 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.7 8.7E-18 1.9E-22 122.1 4.4 77 72-150 147-227 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.7 3.3E-17 7.2E-22 99.1 4.1 46 100-146 18-73 (73)
5 COG5540 RING-finger-containing 99.7 3.7E-17 8E-22 120.1 3.6 51 100-151 322-373 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.6 1.5E-15 3.2E-20 114.5 3.8 55 95-150 281-345 (491)
7 PLN03208 E3 ubiquitin-protein 99.5 1.9E-14 4.2E-19 100.8 3.8 57 96-156 13-85 (193)
8 PF13920 zf-C3HC4_3: Zinc fing 99.5 2.5E-14 5.3E-19 80.4 3.4 46 101-150 2-48 (50)
9 KOG0317 Predicted E3 ubiquitin 99.5 6.4E-14 1.4E-18 102.7 5.5 53 98-154 236-288 (293)
10 PF13923 zf-C3HC4_2: Zinc fing 99.5 4.9E-14 1.1E-18 75.0 3.1 39 104-145 1-39 (39)
11 cd00162 RING RING-finger (Real 99.4 8.5E-14 1.8E-18 76.0 3.2 44 103-149 1-45 (45)
12 PF12861 zf-Apc11: Anaphase-pr 99.4 1.5E-13 3.2E-18 83.9 3.5 52 100-151 20-83 (85)
13 KOG0823 Predicted E3 ubiquitin 99.4 1.4E-13 3.1E-18 98.1 2.8 55 98-156 44-101 (230)
14 KOG0802 E3 ubiquitin ligase [P 99.3 2.9E-13 6.3E-18 110.3 2.3 55 97-152 287-343 (543)
15 PHA02926 zinc finger-like prot 99.3 8.8E-13 1.9E-17 93.6 3.3 53 98-150 167-230 (242)
16 PF14634 zf-RING_5: zinc-RING 99.3 1.5E-12 3.2E-17 71.0 3.2 44 103-147 1-44 (44)
17 PF00097 zf-C3HC4: Zinc finger 99.3 2.8E-12 6.1E-17 68.9 2.3 39 104-145 1-41 (41)
18 KOG0320 Predicted E3 ubiquitin 99.2 4.2E-12 9.2E-17 87.1 3.1 56 96-153 126-181 (187)
19 smart00184 RING Ring finger. E 99.2 7.9E-12 1.7E-16 65.9 3.0 38 104-145 1-39 (39)
20 PF15227 zf-C3HC4_4: zinc fing 99.2 1.1E-11 2.3E-16 66.8 3.1 38 104-145 1-42 (42)
21 COG5194 APC11 Component of SCF 99.2 8.6E-12 1.9E-16 74.2 2.3 52 102-153 21-84 (88)
22 smart00504 Ubox Modified RING 99.2 3.4E-11 7.5E-16 70.7 3.6 51 102-156 2-52 (63)
23 KOG1734 Predicted RING-contain 99.1 2.9E-11 6.3E-16 88.0 0.8 56 96-152 219-283 (328)
24 TIGR00599 rad18 DNA repair pro 99.0 1.4E-10 3.1E-15 90.3 3.7 51 98-152 23-73 (397)
25 smart00744 RINGv The RING-vari 99.0 1.5E-10 3.3E-15 64.3 2.8 42 103-146 1-49 (49)
26 KOG1493 Anaphase-promoting com 99.0 3.2E-11 6.9E-16 71.2 -0.2 50 101-150 20-81 (84)
27 COG5574 PEX10 RING-finger-cont 99.0 2.3E-10 5E-15 83.3 2.4 51 99-153 213-265 (271)
28 KOG0828 Predicted E3 ubiquitin 99.0 1.7E-10 3.7E-15 90.3 1.8 51 100-151 570-635 (636)
29 PF13445 zf-RING_UBOX: RING-ty 98.8 3.4E-09 7.4E-14 57.0 2.8 38 104-143 1-43 (43)
30 KOG2164 Predicted E3 ubiquitin 98.8 1.8E-09 4E-14 85.1 2.4 52 101-156 186-242 (513)
31 KOG0804 Cytoplasmic Zn-finger 98.8 2.4E-09 5.1E-14 83.2 2.6 53 95-150 169-222 (493)
32 PF11793 FANCL_C: FANCL C-term 98.8 1.2E-09 2.6E-14 65.4 0.2 51 101-151 2-67 (70)
33 TIGR00570 cdk7 CDK-activating 98.7 1.1E-08 2.5E-13 76.9 3.9 54 101-155 3-59 (309)
34 KOG0287 Postreplication repair 98.7 4.4E-09 9.5E-14 79.1 1.3 51 98-152 20-70 (442)
35 KOG2930 SCF ubiquitin ligase, 98.7 6.9E-09 1.5E-13 64.9 1.9 28 122-149 80-107 (114)
36 KOG4265 Predicted E3 ubiquitin 98.7 1.1E-08 2.3E-13 77.7 2.8 49 99-151 288-337 (349)
37 KOG0827 Predicted E3 ubiquitin 98.7 8.8E-09 1.9E-13 78.7 2.0 48 101-148 4-54 (465)
38 COG5219 Uncharacterized conser 98.7 4.9E-09 1.1E-13 87.8 0.2 56 95-150 1463-1523(1525)
39 PF04564 U-box: U-box domain; 98.6 2E-08 4.3E-13 60.7 2.4 54 100-157 3-57 (73)
40 KOG4445 Uncharacterized conser 98.6 1.2E-08 2.6E-13 75.6 1.4 55 97-152 111-188 (368)
41 COG5432 RAD18 RING-finger-cont 98.5 6.6E-08 1.4E-12 71.5 2.3 49 98-150 22-70 (391)
42 KOG2177 Predicted E3 ubiquitin 98.5 5.1E-08 1.1E-12 73.7 1.7 47 97-147 9-55 (386)
43 KOG0825 PHD Zn-finger protein 98.5 2.7E-08 5.8E-13 82.0 -0.5 53 99-152 121-173 (1134)
44 KOG4172 Predicted E3 ubiquitin 98.3 1.4E-07 3E-12 52.2 0.8 46 101-150 7-54 (62)
45 KOG1785 Tyrosine kinase negati 98.3 1.5E-07 3.2E-12 72.5 1.1 52 100-155 368-421 (563)
46 KOG1039 Predicted E3 ubiquitin 98.3 2.5E-07 5.4E-12 71.1 2.2 52 99-150 159-221 (344)
47 KOG3970 Predicted E3 ubiquitin 98.3 7E-07 1.5E-11 63.9 3.1 56 96-153 45-108 (299)
48 PF14835 zf-RING_6: zf-RING of 98.3 2E-07 4.4E-12 53.7 0.3 47 102-153 8-54 (65)
49 KOG1645 RING-finger-containing 98.3 6.3E-07 1.4E-11 69.2 2.9 49 100-148 3-54 (463)
50 KOG0311 Predicted E3 ubiquitin 98.2 1.3E-07 2.8E-12 71.7 -1.1 57 98-157 40-97 (381)
51 PF05883 Baculo_RING: Baculovi 98.1 1.1E-06 2.3E-11 58.3 1.0 36 101-137 26-67 (134)
52 KOG0978 E3 ubiquitin ligase in 98.0 1.7E-06 3.7E-11 71.6 0.9 49 102-154 644-693 (698)
53 KOG0824 Predicted E3 ubiquitin 98.0 3.3E-06 7.2E-11 62.9 2.3 50 99-152 5-55 (324)
54 KOG4159 Predicted E3 ubiquitin 97.9 6.1E-06 1.3E-10 64.8 3.0 51 97-151 80-130 (398)
55 KOG0297 TNF receptor-associate 97.9 5.2E-06 1.1E-10 65.5 2.5 56 98-156 18-73 (391)
56 KOG1428 Inhibitor of type V ad 97.9 6.6E-06 1.4E-10 72.3 2.6 54 97-151 3482-3545(3738)
57 KOG1941 Acetylcholine receptor 97.9 4.3E-06 9.3E-11 64.4 1.0 46 100-146 364-412 (518)
58 PF11789 zf-Nse: Zinc-finger o 97.8 1.6E-05 3.5E-10 45.4 2.8 44 98-144 8-53 (57)
59 PF12906 RINGv: RING-variant d 97.8 1.4E-05 3.1E-10 43.8 2.0 40 104-145 1-47 (47)
60 PHA02862 5L protein; Provision 97.7 2.5E-05 5.4E-10 52.3 2.6 47 101-152 2-55 (156)
61 KOG1571 Predicted E3 ubiquitin 97.7 3.3E-05 7.1E-10 59.1 3.0 50 95-151 299-348 (355)
62 KOG1952 Transcription factor N 97.6 3.1E-05 6.7E-10 65.0 1.4 53 97-149 187-246 (950)
63 KOG2660 Locus-specific chromos 97.5 2.5E-05 5.5E-10 59.0 0.4 59 97-158 11-69 (331)
64 KOG3039 Uncharacterized conser 97.5 0.00013 2.8E-09 53.1 3.9 56 100-155 220-275 (303)
65 KOG0801 Predicted E3 ubiquitin 97.5 3.5E-05 7.6E-10 52.5 0.6 32 97-129 173-204 (205)
66 KOG4739 Uncharacterized protei 97.5 4.2E-05 9E-10 55.6 1.0 53 103-159 5-57 (233)
67 KOG1002 Nucleotide excision re 97.4 9E-05 1.9E-09 59.5 2.4 60 95-158 530-594 (791)
68 PHA02825 LAP/PHD finger-like p 97.4 0.00017 3.6E-09 49.3 3.3 52 97-153 4-62 (162)
69 PF10367 Vps39_2: Vacuolar sor 97.4 8.9E-05 1.9E-09 47.8 1.7 34 98-133 75-108 (109)
70 KOG2879 Predicted E3 ubiquitin 97.3 0.0019 4.2E-08 47.9 8.1 53 95-150 233-287 (298)
71 KOG0826 Predicted E3 ubiquitin 97.3 0.0009 1.9E-08 50.8 6.4 52 95-149 294-345 (357)
72 KOG0827 Predicted E3 ubiquitin 97.2 1.4E-05 3E-10 61.6 -4.2 57 95-152 190-247 (465)
73 COG5152 Uncharacterized conser 97.2 0.0002 4.4E-09 50.5 1.8 45 101-149 196-240 (259)
74 PF14570 zf-RING_4: RING/Ubox 97.1 0.00039 8.5E-09 38.0 2.3 45 104-149 1-47 (48)
75 PHA03096 p28-like protein; Pro 97.1 0.00021 4.5E-09 54.0 1.7 48 102-149 179-236 (284)
76 KOG1814 Predicted E3 ubiquitin 97.1 0.0002 4.4E-09 55.7 1.7 49 98-147 181-237 (445)
77 COG5222 Uncharacterized conser 97.1 0.0002 4.2E-09 53.7 1.3 55 102-159 275-331 (427)
78 KOG4275 Predicted E3 ubiquitin 97.0 0.00012 2.5E-09 54.7 -0.6 43 101-151 300-343 (350)
79 KOG1813 Predicted E3 ubiquitin 97.0 0.0003 6.6E-09 52.6 1.1 47 101-151 241-287 (313)
80 KOG4692 Predicted E3 ubiquitin 96.9 0.00079 1.7E-08 51.6 3.0 50 97-150 418-467 (489)
81 PF04641 Rtf2: Rtf2 RING-finge 96.9 0.0011 2.3E-08 49.7 3.5 58 97-155 109-166 (260)
82 KOG1940 Zn-finger protein [Gen 96.9 0.00061 1.3E-08 51.0 2.1 47 100-147 157-204 (276)
83 COG5236 Uncharacterized conser 96.9 0.001 2.2E-08 50.9 3.3 50 96-149 56-107 (493)
84 PF14447 Prok-RING_4: Prokaryo 96.8 0.00072 1.6E-08 37.9 1.4 46 103-154 9-54 (55)
85 PF08746 zf-RING-like: RING-li 96.7 0.00097 2.1E-08 35.8 1.7 41 104-145 1-43 (43)
86 KOG4185 Predicted E3 ubiquitin 96.7 0.0016 3.4E-08 49.6 3.1 48 101-149 3-54 (296)
87 PF14446 Prok-RING_1: Prokaryo 96.5 0.0041 8.8E-08 34.8 3.2 35 100-134 4-38 (54)
88 KOG0309 Conserved WD40 repeat- 96.3 0.0022 4.7E-08 53.8 1.8 22 123-144 1048-1069(1081)
89 KOG3268 Predicted E3 ubiquitin 96.1 0.0027 5.8E-08 44.2 1.3 30 123-152 190-230 (234)
90 KOG2114 Vacuolar assembly/sort 96.1 0.003 6.4E-08 53.6 1.8 43 101-149 840-882 (933)
91 PF03854 zf-P11: P-11 zinc fin 96.0 0.0044 9.6E-08 33.5 1.6 30 123-152 18-48 (50)
92 KOG1100 Predicted E3 ubiquitin 96.0 0.0033 7.1E-08 45.5 1.2 41 104-152 161-202 (207)
93 KOG2034 Vacuolar sorting prote 95.9 0.0037 8.1E-08 53.2 1.4 37 98-136 814-850 (911)
94 COG5175 MOT2 Transcriptional r 95.8 0.0074 1.6E-07 46.3 2.7 55 97-152 10-66 (480)
95 KOG1001 Helicase-like transcri 95.8 0.0042 9.2E-08 52.4 1.3 47 102-153 455-503 (674)
96 PHA02975 hypothetical protein; 95.6 0.012 2.6E-07 34.3 2.4 50 1-50 13-67 (69)
97 PF10272 Tmpp129: Putative tra 95.6 0.0093 2E-07 46.5 2.4 55 97-151 267-352 (358)
98 KOG1609 Protein involved in mR 95.3 0.013 2.8E-07 44.8 2.4 52 100-152 77-136 (323)
99 KOG0298 DEAD box-containing he 95.2 0.0052 1.1E-07 54.3 0.0 45 100-147 1152-1196(1394)
100 KOG2932 E3 ubiquitin ligase in 95.2 0.0075 1.6E-07 45.6 0.9 44 103-151 92-135 (389)
101 COG5183 SSM4 Protein involved 95.1 0.029 6.3E-07 47.7 4.1 62 95-158 6-78 (1175)
102 PF08114 PMP1_2: ATPase proteo 95.1 0.045 9.7E-07 28.5 3.2 35 22-56 5-39 (43)
103 PHA02650 hypothetical protein; 95.0 0.022 4.9E-07 34.1 2.3 30 24-53 46-75 (81)
104 KOG3161 Predicted E3 ubiquitin 94.9 0.007 1.5E-07 50.0 -0.1 45 101-148 11-55 (861)
105 KOG0802 E3 ubiquitin ligase [P 94.8 0.015 3.3E-07 48.1 1.6 55 96-158 474-528 (543)
106 PF07800 DUF1644: Protein of u 94.3 0.053 1.1E-06 37.2 3.1 35 101-136 2-46 (162)
107 KOG1812 Predicted E3 ubiquitin 94.3 0.019 4.2E-07 45.4 1.1 41 98-139 143-184 (384)
108 KOG3053 Uncharacterized conser 94.0 0.026 5.7E-07 41.6 1.2 54 98-152 17-84 (293)
109 PHA02819 hypothetical protein; 93.4 0.085 1.8E-06 31.0 2.4 26 24-49 43-68 (71)
110 PHA02844 putative transmembran 93.3 0.053 1.1E-06 32.2 1.5 26 25-50 46-71 (75)
111 PF12273 RCR: Chitin synthesis 93.2 0.094 2E-06 35.1 2.8 23 32-54 4-26 (130)
112 PF11023 DUF2614: Protein of u 93.1 0.69 1.5E-05 29.9 6.4 33 120-158 72-104 (114)
113 PF12575 DUF3753: Protein of u 92.7 0.091 2E-06 31.2 1.9 23 26-48 47-69 (72)
114 PHA03054 IMV membrane protein; 92.5 0.13 2.9E-06 30.2 2.3 26 24-49 45-70 (72)
115 KOG3899 Uncharacterized conser 92.3 0.081 1.7E-06 39.9 1.6 28 123-150 325-365 (381)
116 KOG3002 Zn finger protein [Gen 92.2 0.11 2.3E-06 39.8 2.2 49 96-150 43-91 (299)
117 PF02439 Adeno_E3_CR2: Adenovi 92.1 0.62 1.3E-05 24.0 4.3 13 27-39 5-17 (38)
118 PF13901 DUF4206: Domain of un 91.8 0.12 2.7E-06 37.2 2.1 41 100-146 151-196 (202)
119 PF01102 Glycophorin_A: Glycop 91.5 0.54 1.2E-05 31.1 4.6 16 27-42 66-81 (122)
120 KOG0825 PHD Zn-finger protein 90.9 0.14 3.1E-06 43.6 1.9 51 100-150 95-154 (1134)
121 KOG2066 Vacuolar assembly/sort 90.7 0.089 1.9E-06 44.7 0.5 48 96-145 779-830 (846)
122 PF05290 Baculo_IE-1: Baculovi 90.6 0.22 4.9E-06 33.2 2.2 55 100-154 79-136 (140)
123 PHA02692 hypothetical protein; 90.6 0.29 6.2E-06 28.8 2.4 16 34-49 53-68 (70)
124 PRK01844 hypothetical protein; 90.5 1.6 3.6E-05 25.9 5.6 55 28-82 5-62 (72)
125 PF01102 Glycophorin_A: Glycop 90.4 0.61 1.3E-05 30.8 4.1 33 26-58 62-94 (122)
126 KOG1829 Uncharacterized conser 90.3 0.1 2.2E-06 43.3 0.5 44 98-145 508-556 (580)
127 KOG0269 WD40 repeat-containing 90.1 0.24 5.3E-06 42.0 2.5 42 101-144 779-820 (839)
128 KOG2817 Predicted E3 ubiquitin 90.1 0.27 5.8E-06 38.7 2.6 51 98-149 331-384 (394)
129 PF15102 TMEM154: TMEM154 prot 90.1 0.15 3.2E-06 34.6 1.1 7 131-137 129-135 (146)
130 KOG4362 Transcriptional regula 89.6 0.093 2E-06 44.1 -0.2 48 100-151 20-70 (684)
131 KOG3842 Adaptor protein Pellin 89.5 0.54 1.2E-05 36.0 3.8 58 95-153 335-417 (429)
132 KOG3800 Predicted E3 ubiquitin 89.5 0.41 8.8E-06 36.2 3.0 49 103-152 2-53 (300)
133 KOG3113 Uncharacterized conser 89.0 0.46 9.9E-06 35.2 3.0 55 99-155 109-163 (293)
134 PRK00523 hypothetical protein; 88.8 2.7 5.9E-05 25.0 5.6 53 30-82 8-63 (72)
135 smart00249 PHD PHD zinc finger 87.9 0.4 8.8E-06 25.1 1.7 31 103-134 1-31 (47)
136 COG3763 Uncharacterized protei 87.4 4.3 9.2E-05 24.0 5.9 52 30-81 7-61 (71)
137 PF00628 PHD: PHD-finger; Int 87.3 0.32 6.9E-06 26.6 1.1 44 103-147 1-50 (51)
138 PF05715 zf-piccolo: Piccolo Z 86.9 0.45 9.9E-06 27.0 1.5 19 139-157 2-20 (61)
139 KOG3005 GIY-YIG type nuclease 86.7 0.53 1.1E-05 35.2 2.1 49 101-149 182-242 (276)
140 PF03911 Sec61_beta: Sec61beta 86.6 1.5 3.2E-05 23.1 3.3 33 9-41 4-36 (41)
141 KOG1815 Predicted E3 ubiquitin 86.3 0.49 1.1E-05 38.3 2.0 39 98-139 67-105 (444)
142 PF02009 Rifin_STEVOR: Rifin/s 85.2 1.6 3.4E-05 33.5 4.2 25 30-54 259-283 (299)
143 TIGR00622 ssl1 transcription f 85.0 1.5 3.2E-05 28.6 3.4 46 101-146 55-110 (112)
144 PF02891 zf-MIZ: MIZ/SP-RING z 84.7 1.2 2.7E-05 24.5 2.6 42 103-148 4-50 (50)
145 PF01363 FYVE: FYVE zinc finge 84.2 0.68 1.5E-05 27.1 1.5 38 99-136 7-44 (69)
146 PF10571 UPF0547: Uncharacteri 83.2 0.64 1.4E-05 21.9 0.8 23 103-127 2-24 (26)
147 KOG4367 Predicted Zn-finger pr 83.0 0.62 1.3E-05 37.3 1.2 34 100-137 3-36 (699)
148 COG5220 TFB3 Cdk activating ki 82.5 0.81 1.7E-05 33.8 1.5 50 99-148 8-62 (314)
149 KOG3457 Sec61 protein transloc 82.2 2.7 5.8E-05 25.8 3.4 47 4-52 39-85 (88)
150 PF04710 Pellino: Pellino; In 81.8 0.44 9.6E-06 37.6 0.0 27 116-148 303-337 (416)
151 PF07975 C1_4: TFIIH C1-like d 81.4 1.3 2.7E-05 24.6 1.7 42 104-146 2-50 (51)
152 TIGR01478 STEVOR variant surfa 81.4 3.1 6.8E-05 31.5 4.3 24 31-54 263-286 (295)
153 cd00350 rubredoxin_like Rubred 81.1 0.93 2E-05 22.5 1.1 19 123-147 7-25 (33)
154 PF13719 zinc_ribbon_5: zinc-r 80.7 1.1 2.4E-05 23.0 1.3 25 103-128 4-36 (37)
155 PF03672 UPF0154: Uncharacteri 80.4 6.4 0.00014 22.9 4.5 13 70-82 43-55 (64)
156 PTZ00370 STEVOR; Provisional 79.7 3.4 7.3E-05 31.4 4.0 24 31-54 259-282 (296)
157 KOG2068 MOT2 transcription fac 79.7 2.3 5E-05 32.8 3.2 52 101-153 249-301 (327)
158 KOG2807 RNA polymerase II tran 79.5 1.8 4E-05 33.4 2.6 50 97-147 326-375 (378)
159 PF15050 SCIMP: SCIMP protein 79.0 5.6 0.00012 26.1 4.3 28 27-54 8-37 (133)
160 PF00558 Vpu: Vpu protein; In 78.7 3.7 8E-05 25.1 3.3 25 29-53 7-31 (81)
161 PF06906 DUF1272: Protein of u 78.3 3.5 7.7E-05 23.2 2.9 46 102-152 6-54 (57)
162 KOG1812 Predicted E3 ubiquitin 78.2 1.2 2.6E-05 35.4 1.3 44 101-145 306-351 (384)
163 PF14979 TMEM52: Transmembrane 78.1 8.6 0.00019 26.2 5.2 31 24-54 17-48 (154)
164 PF13717 zinc_ribbon_4: zinc-r 77.5 1.3 2.7E-05 22.6 0.9 25 103-128 4-36 (36)
165 PF07406 NICE-3: NICE-3 protei 76.2 4.1 9E-05 29.0 3.5 27 22-48 7-33 (186)
166 KOG3842 Adaptor protein Pellin 76.1 1.5 3.2E-05 33.8 1.2 43 100-148 289-350 (429)
167 PF08374 Protocadherin: Protoc 76.0 1.9 4.1E-05 31.3 1.7 13 25-37 35-47 (221)
168 PHA02849 putative transmembran 75.1 11 0.00024 22.7 4.5 35 16-51 7-41 (82)
169 PF04423 Rad50_zn_hook: Rad50 75.1 0.97 2.1E-05 25.2 0.1 12 140-151 21-32 (54)
170 PF07191 zinc-ribbons_6: zinc- 74.5 0.26 5.6E-06 29.2 -2.5 40 102-150 2-41 (70)
171 PF15330 SIT: SHP2-interacting 74.1 6.8 0.00015 25.3 3.8 22 33-54 5-26 (107)
172 PRK05978 hypothetical protein; 73.9 2.2 4.7E-05 29.3 1.5 27 121-152 37-65 (148)
173 cd00065 FYVE FYVE domain; Zinc 73.8 3 6.5E-05 23.1 1.9 36 102-137 3-38 (57)
174 KOG4718 Non-SMC (structural ma 73.5 2.5 5.4E-05 30.6 1.8 42 101-145 181-222 (235)
175 PF15345 TMEM51: Transmembrane 73.4 8.3 0.00018 28.4 4.5 37 21-57 53-89 (233)
176 PRK11827 hypothetical protein; 73.3 1 2.2E-05 25.9 -0.1 18 134-151 3-20 (60)
177 PF14169 YdjO: Cold-inducible 73.2 1.8 3.9E-05 24.7 0.8 15 139-153 39-53 (59)
178 smart00064 FYVE Protein presen 73.2 3.7 8E-05 23.8 2.3 37 101-137 10-46 (68)
179 PF02009 Rifin_STEVOR: Rifin/s 73.1 7.1 0.00015 30.0 4.3 29 26-54 258-286 (299)
180 KOG1729 FYVE finger containing 72.5 0.62 1.4E-05 35.5 -1.5 36 103-139 216-251 (288)
181 TIGR01477 RIFIN variant surfac 71.6 5.1 0.00011 31.4 3.2 26 29-54 312-337 (353)
182 KOG2071 mRNA cleavage and poly 71.4 2.5 5.3E-05 35.2 1.6 35 99-135 511-556 (579)
183 PTZ00046 rifin; Provisional 71.2 7.6 0.00016 30.6 4.1 26 29-54 317-342 (358)
184 smart00647 IBR In Between Ring 70.6 1.3 2.9E-05 25.1 -0.1 21 115-135 38-58 (64)
185 PF02038 ATP1G1_PLM_MAT8: ATP1 70.6 16 0.00034 20.1 4.7 21 27-47 13-33 (50)
186 TIGR01478 STEVOR variant surfa 70.5 7 0.00015 29.7 3.6 27 24-50 259-286 (295)
187 PHA03286 envelope glycoprotein 70.3 12 0.00025 30.4 5.0 41 8-48 371-411 (492)
188 PF05393 Hum_adeno_E3A: Human 70.0 17 0.00037 22.5 4.6 10 41-50 48-57 (94)
189 PF06679 DUF1180: Protein of u 69.8 25 0.00053 24.6 6.0 9 43-51 109-117 (163)
190 PF03229 Alpha_GJ: Alphavirus 69.7 28 0.00062 22.8 5.9 26 29-54 88-113 (126)
191 smart00132 LIM Zinc-binding do 69.5 4.2 9E-05 20.1 1.7 37 103-149 1-37 (39)
192 PTZ00370 STEVOR; Provisional 69.4 7.5 0.00016 29.6 3.6 23 28-50 260-282 (296)
193 PF05961 Chordopox_A13L: Chord 68.9 19 0.00041 21.1 4.4 9 43-51 16-24 (68)
194 PF06679 DUF1180: Protein of u 67.9 19 0.00042 25.1 5.2 28 27-54 96-123 (163)
195 PF11669 WBP-1: WW domain-bind 67.3 12 0.00025 24.0 3.7 10 45-54 35-44 (102)
196 COG5109 Uncharacterized conser 66.3 4.9 0.00011 31.0 2.1 47 99-146 334-383 (396)
197 PF04639 Baculo_E56: Baculovir 65.3 3.1 6.7E-05 31.5 0.9 33 17-49 267-299 (305)
198 PLN02189 cellulose synthase 65.1 10 0.00022 34.0 4.1 53 98-150 31-87 (1040)
199 COG1592 Rubrerythrin [Energy p 64.9 3.6 7.8E-05 28.8 1.1 25 117-148 134-158 (166)
200 PF09723 Zn-ribbon_8: Zinc rib 64.4 1.5 3.3E-05 23.1 -0.6 24 123-147 11-34 (42)
201 PRK01253 preprotein translocas 64.0 6.7 0.00015 22.0 1.9 36 7-42 13-48 (54)
202 PF15048 OSTbeta: Organic solu 63.7 30 0.00065 23.0 5.1 30 25-54 33-62 (125)
203 PF01034 Syndecan: Syndecan do 63.6 2 4.4E-05 24.9 -0.2 22 31-52 15-36 (64)
204 PF05454 DAG1: Dystroglycan (D 63.6 2.3 5E-05 32.5 0.0 10 36-45 156-165 (290)
205 PF04277 OAD_gamma: Oxaloaceta 63.5 27 0.0006 20.7 4.8 21 31-51 12-32 (79)
206 PF07172 GRP: Glycine rich pro 62.8 9.6 0.00021 24.0 2.7 13 27-39 5-17 (95)
207 KOG4577 Transcription factor L 62.8 2.2 4.8E-05 32.4 -0.2 43 101-153 92-134 (383)
208 PF14311 DUF4379: Domain of un 62.6 5.1 0.00011 22.3 1.3 24 121-145 32-55 (55)
209 PF00412 LIM: LIM domain; Int 62.0 5.9 0.00013 21.8 1.5 40 104-153 1-40 (58)
210 PF10497 zf-4CXXC_R1: Zinc-fin 62.0 15 0.00033 23.6 3.6 24 124-147 37-69 (105)
211 PF02060 ISK_Channel: Slow vol 62.0 31 0.00068 22.9 5.0 28 27-54 45-72 (129)
212 PF09356 Phage_BR0599: Phage c 61.0 10 0.00022 23.0 2.5 25 110-135 40-64 (80)
213 PF06844 DUF1244: Protein of u 61.0 5.2 0.00011 23.3 1.1 11 127-137 12-22 (68)
214 KOG1538 Uncharacterized conser 60.3 4.4 9.6E-05 34.6 1.1 37 114-150 1041-1077(1081)
215 PF05191 ADK_lid: Adenylate ki 60.1 4.6 0.0001 20.5 0.8 30 119-150 3-32 (36)
216 PF03119 DNA_ligase_ZBD: NAD-d 59.9 3.6 7.8E-05 19.7 0.3 12 141-152 1-12 (28)
217 PF10083 DUF2321: Uncharacteri 59.9 5.6 0.00012 27.4 1.3 48 106-156 9-56 (158)
218 PF07649 C1_3: C1-like domain; 59.4 8.9 0.00019 18.3 1.7 29 103-132 2-30 (30)
219 PHA03030 hypothetical protein; 58.9 6.2 0.00013 25.1 1.3 19 36-54 9-27 (122)
220 TIGR02976 phageshock_pspB phag 58.6 38 0.00082 20.4 4.7 12 40-51 16-27 (75)
221 KOG1815 Predicted E3 ubiquitin 58.0 3.2 6.9E-05 33.7 -0.1 37 102-138 227-267 (444)
222 PF15353 HECA: Headcase protei 57.8 6.9 0.00015 25.1 1.4 14 123-136 40-53 (107)
223 COG4357 Zinc finger domain con 57.7 10 0.00022 23.9 2.1 29 123-152 65-93 (105)
224 PF02419 PsbL: PsbL protein; 57.4 25 0.00054 17.9 3.9 26 16-41 5-30 (37)
225 KOG2041 WD40 repeat protein [G 57.0 8.6 0.00019 33.3 2.2 48 99-150 1129-1185(1189)
226 CHL00038 psbL photosystem II p 56.9 26 0.00056 17.9 3.8 26 16-41 6-31 (38)
227 PF07282 OrfB_Zn_ribbon: Putat 56.9 14 0.00031 21.3 2.6 36 100-135 27-64 (69)
228 smart00531 TFIIE Transcription 56.0 13 0.00028 25.3 2.6 15 140-154 124-138 (147)
229 PF04277 OAD_gamma: Oxaloaceta 55.9 33 0.00071 20.4 4.2 28 27-54 5-32 (79)
230 PF10661 EssA: WXG100 protein 54.9 27 0.00059 23.8 4.1 17 25-41 116-132 (145)
231 PF04216 FdhE: Protein involve 54.7 1.4 3.1E-05 33.5 -2.5 49 98-147 169-219 (290)
232 PF14584 DUF4446: Protein of u 54.6 27 0.00058 24.0 4.0 30 79-112 79-108 (151)
233 PF12877 DUF3827: Domain of un 54.3 9.6 0.00021 32.3 2.0 31 24-54 266-296 (684)
234 KOG2113 Predicted RNA binding 53.6 5.4 0.00012 30.8 0.5 54 101-158 136-191 (394)
235 PF05337 CSF-1: Macrophage col 53.5 4.4 9.5E-05 30.6 0.0 9 18-26 218-226 (285)
236 KOG3799 Rab3 effector RIM1 and 53.4 3.7 8E-05 27.5 -0.3 52 96-148 60-116 (169)
237 PF13832 zf-HC5HC2H_2: PHD-zin 53.3 13 0.00027 23.7 2.2 33 100-134 54-87 (110)
238 KOG2979 Protein involved in DN 53.0 9.8 0.00021 28.5 1.7 42 101-145 176-219 (262)
239 PF10669 Phage_Gp23: Protein g 52.3 30 0.00066 21.8 3.6 23 32-54 19-41 (121)
240 PF10577 UPF0560: Uncharacteri 52.0 52 0.0011 28.9 6.0 33 22-54 266-299 (807)
241 TIGR01477 RIFIN variant surfac 51.7 18 0.00039 28.5 3.1 30 25-54 311-340 (353)
242 PRK00753 psbL photosystem II r 51.6 33 0.00072 17.6 3.4 26 16-41 7-32 (39)
243 PF15069 FAM163: FAM163 family 51.6 11 0.00025 25.5 1.7 10 98-107 88-97 (143)
244 PF14569 zf-UDP: Zinc-binding 51.5 28 0.00061 21.1 3.2 61 98-158 6-70 (80)
245 PRK05886 yajC preprotein trans 51.1 25 0.00055 22.8 3.2 12 39-50 13-24 (109)
246 KOG4185 Predicted E3 ubiquitin 51.1 2.3 4.9E-05 32.4 -1.9 49 100-148 206-265 (296)
247 PLN02436 cellulose synthase A 50.7 25 0.00055 31.8 4.1 53 98-150 33-89 (1094)
248 PTZ00046 rifin; Provisional 50.7 20 0.00043 28.3 3.2 30 25-54 316-345 (358)
249 PF13994 PgaD: PgaD-like prote 50.3 74 0.0016 21.3 5.6 14 70-83 107-120 (138)
250 PF14914 LRRC37AB_C: LRRC37A/B 50.3 41 0.00088 23.1 4.2 16 39-54 132-147 (154)
251 KOG4323 Polycomb-like PHD Zn-f 50.0 14 0.00031 30.1 2.4 56 98-153 165-229 (464)
252 smart00734 ZnF_Rad18 Rad18-lik 49.6 7.4 0.00016 18.2 0.5 9 141-149 3-11 (26)
253 PF08374 Protocadherin: Protoc 49.4 19 0.00041 26.3 2.7 34 18-51 31-64 (221)
254 PF06937 EURL: EURL protein; 49.2 15 0.00032 27.7 2.2 44 100-143 29-74 (285)
255 PF07010 Endomucin: Endomucin; 48.6 41 0.00088 24.9 4.2 6 48-53 213-218 (259)
256 PF04710 Pellino: Pellino; In 48.4 5.9 0.00013 31.5 0.0 52 100-152 327-403 (416)
257 PF13314 DUF4083: Domain of un 48.1 51 0.0011 18.7 4.3 8 46-53 25-32 (58)
258 COG4306 Uncharacterized protei 47.8 10 0.00022 25.2 1.0 27 126-155 29-55 (160)
259 PF11174 DUF2970: Protein of u 47.6 29 0.00063 19.6 2.7 25 26-50 30-54 (56)
260 PF15183 MRAP: Melanocortin-2 47.1 26 0.00056 21.5 2.6 25 17-41 27-51 (90)
261 PF04689 S1FA: DNA binding pro 46.9 35 0.00075 19.8 3.0 23 22-44 9-31 (69)
262 COG2835 Uncharacterized conser 46.7 8.3 0.00018 22.1 0.4 13 140-152 9-21 (60)
263 KOG3039 Uncharacterized conser 46.7 13 0.00028 27.8 1.5 36 98-137 40-75 (303)
264 PF05624 LSR: Lipolysis stimul 46.5 17 0.00038 19.5 1.6 15 31-45 6-20 (49)
265 PF04834 Adeno_E3_14_5: Early 46.4 34 0.00075 21.6 3.2 37 11-47 8-44 (97)
266 PLN02195 cellulose synthase A 46.1 31 0.00067 31.0 3.9 60 98-158 3-67 (977)
267 PF09237 GAGA: GAGA factor; I 45.8 6.4 0.00014 21.8 -0.1 10 141-150 26-35 (54)
268 PF09943 DUF2175: Uncharacteri 45.7 20 0.00043 22.9 2.0 33 103-137 4-36 (101)
269 COG3630 OadG Na+-transporting 45.7 55 0.0012 20.1 3.9 24 29-52 13-36 (84)
270 COG4847 Uncharacterized protei 45.6 26 0.00057 22.0 2.5 36 101-138 6-41 (103)
271 COG1862 YajC Preprotein transl 45.0 31 0.00067 21.9 2.9 22 32-53 11-32 (97)
272 PF07438 DUF1514: Protein of u 44.9 27 0.00059 20.2 2.3 14 28-41 2-15 (66)
273 PF01299 Lamp: Lysosome-associ 44.8 21 0.00045 27.4 2.5 27 28-54 270-296 (306)
274 PHA03164 hypothetical protein; 44.4 39 0.00085 20.3 3.0 14 29-42 61-74 (88)
275 PF02318 FYVE_2: FYVE-type zin 44.2 19 0.00041 23.5 1.9 47 99-147 52-102 (118)
276 PF06750 DiS_P_DiS: Bacterial 44.1 12 0.00025 23.4 0.9 40 100-152 32-71 (92)
277 COG4640 Predicted membrane pro 44.1 10 0.00022 30.3 0.7 33 18-50 42-74 (465)
278 KOG1140 N-end rule pathway, re 43.8 14 0.00031 35.0 1.7 38 122-159 1150-1207(1738)
279 COG1545 Predicted nucleic-acid 43.7 12 0.00027 25.3 1.0 21 121-149 33-53 (140)
280 PF00130 C1_1: Phorbol esters/ 43.5 26 0.00057 18.9 2.2 35 99-134 9-45 (53)
281 TIGR02605 CxxC_CxxC_SSSS putat 43.1 7.1 0.00015 21.3 -0.2 20 123-147 11-34 (52)
282 PLN02638 cellulose synthase A 43.1 30 0.00065 31.4 3.4 51 99-150 15-70 (1079)
283 PF10577 UPF0560: Uncharacteri 43.0 28 0.00061 30.4 3.2 29 28-56 277-305 (807)
284 KOG1245 Chromatin remodeling c 42.9 9.1 0.0002 35.7 0.3 52 97-149 1104-1159(1404)
285 PF15179 Myc_target_1: Myc tar 42.8 64 0.0014 23.0 4.4 17 38-54 33-49 (197)
286 PF10176 DUF2370: Protein of u 42.7 1.4E+02 0.003 22.2 7.0 31 24-54 192-222 (233)
287 PRK11088 rrmA 23S rRNA methylt 42.5 18 0.00038 27.1 1.8 25 102-127 3-27 (272)
288 PLN02400 cellulose synthase 42.5 26 0.00056 31.8 3.0 52 99-151 34-90 (1085)
289 PRK01343 zinc-binding protein; 42.5 14 0.0003 21.0 0.9 12 139-150 9-20 (57)
290 PRK03814 oxaloacetate decarbox 42.4 78 0.0017 19.5 4.3 27 28-54 13-39 (85)
291 PF02699 YajC: Preprotein tran 42.1 35 0.00076 20.7 2.8 9 41-49 13-21 (82)
292 PF13771 zf-HC5HC2H: PHD-like 42.1 19 0.0004 21.9 1.6 33 100-134 35-68 (90)
293 KOG2678 Predicted membrane pro 41.8 50 0.0011 24.3 3.8 27 26-52 215-241 (244)
294 TIGR01195 oadG_fam sodium pump 41.5 82 0.0018 19.2 4.3 21 31-51 12-32 (82)
295 PF12072 DUF3552: Domain of un 41.4 51 0.0011 23.7 3.9 19 31-49 4-22 (201)
296 KOG0824 Predicted E3 ubiquitin 40.6 8.2 0.00018 29.6 -0.3 51 98-151 102-152 (324)
297 PF14851 FAM176: FAM176 family 39.8 40 0.00087 23.3 3.0 21 34-54 29-49 (153)
298 KOG3653 Transforming growth fa 39.8 1.5E+02 0.0032 24.8 6.5 13 127-139 289-302 (534)
299 KOG1356 Putative transcription 39.8 14 0.00031 32.3 1.0 51 98-150 226-282 (889)
300 PRK13415 flagella biosynthesis 39.6 1.1E+02 0.0025 22.4 5.4 14 41-54 79-92 (219)
301 PHA02657 hypothetical protein; 39.6 74 0.0016 19.6 3.8 14 76-89 71-84 (95)
302 PHA02831 EEV host range protei 39.4 53 0.0012 24.9 3.9 14 8-21 205-218 (268)
303 PTZ00303 phosphatidylinositol 39.4 29 0.00063 30.6 2.7 36 101-136 460-500 (1374)
304 PF11980 DUF3481: Domain of un 39.1 72 0.0016 19.6 3.7 34 20-54 9-42 (87)
305 PF15361 RIC3: Resistance to i 38.7 77 0.0017 21.8 4.3 28 27-54 81-108 (152)
306 PF12768 Rax2: Cortical protei 38.7 38 0.00083 25.8 3.1 6 25-30 227-232 (281)
307 KOG3637 Vitronectin receptor, 38.4 25 0.00055 31.9 2.3 31 24-54 976-1006(1030)
308 PF07219 HemY_N: HemY protein 38.2 82 0.0018 20.0 4.2 11 24-34 13-23 (108)
309 COG4741 Predicted secreted end 37.8 74 0.0016 22.0 4.0 10 83-92 99-108 (175)
310 PRK05585 yajC preprotein trans 37.7 45 0.00097 21.4 2.9 11 39-49 27-37 (106)
311 PRK00418 DNA gyrase inhibitor; 37.5 27 0.00058 20.2 1.6 11 140-150 7-17 (62)
312 KOG2231 Predicted E3 ubiquitin 37.3 36 0.00078 29.3 2.9 46 103-152 2-54 (669)
313 KOG4218 Nuclear hormone recept 37.1 31 0.00068 27.2 2.3 25 98-124 12-36 (475)
314 TIGR00739 yajC preprotein tran 37.0 28 0.00061 21.3 1.8 6 43-48 16-21 (84)
315 PF13703 PepSY_TM_2: PepSY-ass 36.2 84 0.0018 19.1 3.9 25 25-49 16-40 (88)
316 COG3813 Uncharacterized protei 36.2 58 0.0013 19.4 2.9 26 125-152 29-54 (84)
317 PF12259 DUF3609: Protein of u 35.9 29 0.00062 27.5 2.1 11 39-49 312-322 (361)
318 PF14002 YniB: YniB-like prote 35.8 94 0.002 21.7 4.3 22 10-31 57-78 (166)
319 PRK14585 pgaD putative PGA bio 35.8 1.4E+02 0.003 20.2 5.6 13 71-83 97-109 (137)
320 PRK11486 flagellar biosynthesi 35.3 1.1E+02 0.0024 20.3 4.5 17 25-41 16-32 (124)
321 smart00109 C1 Protein kinase C 35.2 35 0.00077 17.6 1.8 34 100-134 10-44 (49)
322 PF03884 DUF329: Domain of unk 35.1 20 0.00044 20.3 0.8 11 141-151 4-14 (57)
323 TIGR01562 FdhE formate dehydro 34.9 14 0.00031 28.5 0.2 48 99-147 182-232 (305)
324 PF11238 DUF3039: Protein of u 34.9 17 0.00037 20.7 0.5 27 111-147 21-52 (58)
325 PHA02662 ORF131 putative membr 34.8 77 0.0017 23.3 3.9 8 28-35 187-194 (226)
326 PRK02919 oxaloacetate decarbox 34.7 97 0.0021 18.9 3.8 22 31-52 15-36 (82)
327 PRK14584 hmsS hemin storage sy 34.7 1.6E+02 0.0034 20.4 6.1 13 71-83 106-118 (153)
328 PLN00055 photosystem II reacti 34.5 1E+02 0.0023 18.3 4.3 20 25-44 39-58 (73)
329 TIGR00686 phnA alkylphosphonat 34.3 23 0.00049 22.9 1.0 26 102-127 3-29 (109)
330 PF10954 DUF2755: Protein of u 34.2 1.1E+02 0.0023 19.1 3.9 23 31-53 77-99 (100)
331 PF03554 Herpes_UL73: UL73 vir 34.1 1.1E+02 0.0025 18.7 5.9 28 27-54 47-74 (82)
332 KOG4812 Golgi-associated prote 34.0 1.1E+02 0.0024 22.9 4.7 30 25-54 222-251 (262)
333 cd00730 rubredoxin Rubredoxin; 33.8 39 0.00085 18.5 1.8 11 138-148 33-43 (50)
334 COG3492 Uncharacterized protei 33.5 22 0.00047 22.2 0.8 11 127-137 43-53 (104)
335 PF05502 Dynactin_p62: Dynacti 33.4 20 0.00044 29.5 0.9 16 100-115 25-40 (483)
336 PF13453 zf-TFIIB: Transcripti 32.4 18 0.00039 18.7 0.3 11 141-151 1-11 (41)
337 PF15446 zf-PHD-like: PHD/FYVE 32.3 28 0.0006 24.5 1.3 32 103-135 1-35 (175)
338 PHA03156 hypothetical protein; 32.1 1.3E+02 0.0028 18.7 6.0 25 30-54 58-82 (90)
339 cd00029 C1 Protein kinase C co 32.0 32 0.00069 18.0 1.3 34 100-134 10-45 (50)
340 CHL00066 psbH photosystem II p 31.7 1.2E+02 0.0025 18.1 4.3 17 26-42 40-56 (73)
341 KOG4430 Topoisomerase I-bindin 31.6 15 0.00033 30.6 -0.0 54 98-151 257-310 (553)
342 PF00737 PsbH: Photosystem II 31.4 99 0.0021 17.1 4.4 12 27-38 26-37 (52)
343 PF01485 IBR: IBR domain; Int 31.2 5.1 0.00011 22.5 -2.1 16 120-135 43-58 (64)
344 PF03107 C1_2: C1 domain; Int 31.1 45 0.00097 15.9 1.6 28 103-131 2-29 (30)
345 PF11346 DUF3149: Protein of u 31.1 89 0.0019 16.5 4.2 14 39-52 21-34 (42)
346 KOG1512 PHD Zn-finger protein 31.1 23 0.00049 27.1 0.8 31 102-133 315-345 (381)
347 COG4647 AcxC Acetone carboxyla 30.8 27 0.00058 23.4 1.0 24 102-129 58-81 (165)
348 KOG3195 Uncharacterized membra 30.7 90 0.0019 22.5 3.6 37 9-45 103-142 (213)
349 smart00834 CxxC_CXXC_SSSS Puta 30.5 14 0.00031 18.7 -0.3 26 123-149 11-36 (41)
350 COG0675 Transposase and inacti 30.3 54 0.0012 24.9 2.8 34 98-134 306-339 (364)
351 COG3190 FliO Flagellar biogene 30.0 1.8E+02 0.0039 19.7 4.8 26 27-52 24-49 (137)
352 PRK03564 formate dehydrogenase 29.6 43 0.00094 25.9 2.1 48 99-147 185-234 (309)
353 PF15176 LRR19-TM: Leucine-ric 29.6 1.6E+02 0.0034 18.9 5.1 24 25-48 14-37 (102)
354 PF15050 SCIMP: SCIMP protein 29.5 1.4E+02 0.0031 19.7 4.1 19 33-51 10-28 (133)
355 PF12660 zf-TFIIIC: Putative z 29.3 12 0.00027 23.6 -0.7 52 101-154 14-70 (99)
356 PRK10220 hypothetical protein; 29.0 41 0.00088 21.8 1.5 25 102-126 4-29 (111)
357 COG3364 Zn-ribbon containing p 28.7 36 0.00079 21.8 1.3 22 123-148 8-29 (112)
358 PF02723 NS3_envE: Non-structu 28.6 1.4E+02 0.0031 18.3 3.8 18 25-42 14-31 (82)
359 PF11694 DUF3290: Protein of u 28.6 1.1E+02 0.0024 21.0 3.7 23 29-51 19-41 (149)
360 PF05399 EVI2A: Ectropic viral 28.5 1.1E+02 0.0025 22.3 3.9 13 35-47 143-155 (227)
361 PLN02915 cellulose synthase A 28.4 1.2E+02 0.0025 27.8 4.7 55 97-151 11-69 (1044)
362 PF12301 CD99L2: CD99 antigen 28.3 1.6E+02 0.0035 20.7 4.6 11 22-32 111-121 (169)
363 PF10146 zf-C4H2: Zinc finger- 28.2 42 0.00091 24.8 1.7 19 130-148 199-217 (230)
364 PF08274 PhnA_Zn_Ribbon: PhnA 28.0 20 0.00042 17.5 -0.0 24 103-126 4-28 (30)
365 COG3357 Predicted transcriptio 27.8 30 0.00065 21.6 0.8 26 123-152 64-89 (97)
366 KOG3726 Uncharacterized conser 27.6 32 0.0007 29.5 1.2 42 101-146 654-696 (717)
367 PF07423 DUF1510: Protein of u 27.2 67 0.0015 23.6 2.6 19 29-47 17-35 (217)
368 PRK02624 psbH photosystem II r 27.1 1.3E+02 0.0029 17.3 4.1 17 25-41 27-43 (64)
369 COG1622 CyoA Heme/copper-type 27.1 1.6E+02 0.0034 22.1 4.6 8 132-139 216-223 (247)
370 PF15106 TMEM156: TMEM156 prot 26.9 1.1E+02 0.0024 22.3 3.6 18 30-47 178-195 (226)
371 PHA02610 uvsY.-2 hypothetical 26.6 25 0.00053 19.5 0.2 12 140-151 2-13 (53)
372 COG1675 TFA1 Transcription ini 26.5 42 0.0009 23.8 1.4 24 133-156 126-149 (176)
373 COG5216 Uncharacterized conser 26.3 38 0.00083 19.3 1.0 22 104-125 31-52 (67)
374 PF03966 Trm112p: Trm112p-like 26.1 46 0.001 19.2 1.4 7 121-127 57-63 (68)
375 PF10812 DUF2561: Protein of u 26.1 2E+02 0.0043 20.9 4.7 30 23-52 60-89 (207)
376 KOG4451 Uncharacterized conser 25.9 46 0.00099 24.6 1.5 20 130-149 254-273 (286)
377 PF15025 DUF4524: Domain of un 25.9 48 0.001 22.8 1.6 20 110-130 13-34 (148)
378 COG4768 Uncharacterized protei 25.7 1.8E+02 0.0038 19.7 4.1 11 31-41 6-16 (139)
379 PF03381 CDC50: LEM3 (ligand-e 25.5 2E+02 0.0044 21.8 5.1 23 30-52 247-269 (278)
380 COG0353 RecR Recombinational D 25.5 60 0.0013 23.4 2.0 23 97-119 62-84 (198)
381 PHA03163 hypothetical protein; 25.4 1.8E+02 0.0038 18.1 6.0 25 30-54 59-83 (92)
382 PF11290 DUF3090: Protein of u 25.4 43 0.00092 23.6 1.3 16 138-153 153-168 (171)
383 PRK03427 cell division protein 25.3 81 0.0018 24.7 2.9 24 29-52 7-30 (333)
384 PHA02681 ORF089 virion membran 25.3 1.7E+02 0.0037 18.0 3.6 9 74-82 51-59 (92)
385 PF04906 Tweety: Tweety; Inte 25.1 1.9E+02 0.0042 23.3 5.1 33 27-59 18-50 (406)
386 PRK00398 rpoP DNA-directed RNA 25.0 36 0.00077 18.0 0.7 16 139-154 21-36 (46)
387 PF05810 NinF: NinF protein; 25.0 55 0.0012 18.4 1.4 11 127-137 34-44 (58)
388 PRK06287 cobalt transport prot 24.9 2E+02 0.0043 18.5 5.0 25 27-51 77-101 (107)
389 TIGR01367 pyrE_Therm orotate p 24.8 34 0.00073 24.3 0.7 15 140-154 170-184 (187)
390 COG2824 PhnA Uncharacterized Z 24.8 44 0.00094 21.6 1.1 14 102-115 4-17 (112)
391 KOG1094 Discoidin domain recep 24.7 1.1E+02 0.0023 26.5 3.6 26 29-54 391-416 (807)
392 PRK11677 hypothetical protein; 24.4 1.2E+02 0.0027 20.4 3.3 13 38-50 11-23 (134)
393 PF11337 DUF3139: Protein of u 24.3 1.2E+02 0.0027 18.3 3.1 13 72-84 46-58 (85)
394 PRK04778 septation ring format 24.3 1E+02 0.0023 25.9 3.6 11 43-53 15-25 (569)
395 COG5151 SSL1 RNA polymerase II 24.2 70 0.0015 24.9 2.3 51 96-152 303-375 (421)
396 PF08209 Sgf11: Sgf11 (transcr 24.1 26 0.00057 17.4 0.0 12 141-152 6-17 (33)
397 COG5627 MMS21 DNA repair prote 24.1 45 0.00097 24.8 1.2 41 101-144 189-231 (275)
398 PF10886 DUF2685: Protein of u 24.0 33 0.00071 19.2 0.4 12 141-152 3-14 (54)
399 PRK09702 PTS system arbutin-sp 23.9 2E+02 0.0044 20.0 4.4 19 36-54 15-33 (161)
400 cd00729 rubredoxin_SM Rubredox 23.8 49 0.0011 16.4 1.0 9 140-148 19-27 (34)
401 KOG1631 Translocon-associated 23.7 1.6E+02 0.0035 21.9 4.0 16 17-32 176-191 (261)
402 PHA02909 hypothetical protein; 23.6 1.5E+02 0.0033 16.7 3.3 7 4-10 6-12 (72)
403 PF06677 Auto_anti-p27: Sjogre 23.4 52 0.0011 17.2 1.1 17 135-151 13-29 (41)
404 KOG4443 Putative transcription 23.3 40 0.00086 28.9 0.9 27 123-149 41-72 (694)
405 PF05058 ActA: ActA Protein; 23.3 1.3E+02 0.0027 25.3 3.7 30 20-49 599-628 (633)
406 PF15281 Consortin_C: Consorti 23.2 1.3E+02 0.0027 19.6 3.0 19 23-41 49-67 (113)
407 PF10588 NADH-G_4Fe-4S_3: NADH 23.1 64 0.0014 16.7 1.4 16 132-147 5-21 (41)
408 KOG4021 Mitochondrial ribosoma 23.0 41 0.00089 24.2 0.8 22 129-150 97-119 (239)
409 PRK06266 transcription initiat 22.8 1.3E+02 0.0029 21.2 3.4 18 136-153 133-150 (178)
410 PF11770 GAPT: GRB2-binding ad 22.7 38 0.00083 23.3 0.6 19 139-157 129-147 (158)
411 PF02148 zf-UBP: Zn-finger in 22.7 64 0.0014 18.3 1.5 24 104-130 1-24 (63)
412 PRK11595 DNA utilization prote 22.6 88 0.0019 22.8 2.6 23 127-149 22-44 (227)
413 PRK12705 hypothetical protein; 22.6 1.6E+02 0.0034 24.7 4.2 9 31-39 9-17 (508)
414 PF13980 UPF0370: Uncharacteri 21.7 1.2E+02 0.0026 17.3 2.4 12 26-37 7-18 (63)
415 PF09777 OSTMP1: Osteopetrosis 21.7 98 0.0021 23.0 2.7 9 41-49 202-210 (237)
416 PHA03265 envelope glycoprotein 21.6 80 0.0017 25.0 2.2 24 31-54 353-376 (402)
417 TIGR02098 MJ0042_CXXC MJ0042 f 21.6 94 0.002 15.4 1.9 6 104-109 5-10 (38)
418 KOG4433 Tweety transmembrane/c 21.6 2.4E+02 0.0053 23.5 4.9 24 27-50 42-65 (526)
419 TIGR01053 LSD1 zinc finger dom 21.5 61 0.0013 15.8 1.1 17 141-157 3-19 (31)
420 KOG3816 Cell differentiation r 21.5 42 0.00091 26.9 0.7 29 104-136 91-119 (526)
421 TIGR01206 lysW lysine biosynth 21.5 52 0.0011 18.4 0.9 13 141-153 4-16 (54)
422 PF12088 DUF3565: Protein of u 21.5 72 0.0016 18.3 1.5 18 113-131 8-25 (61)
423 TIGR00373 conserved hypothetic 21.4 1.3E+02 0.0029 20.7 3.1 17 137-153 126-142 (158)
424 PF11431 Transport_MerF: Membr 21.3 55 0.0012 17.6 0.9 16 39-54 29-44 (46)
425 PRK13844 recombination protein 21.3 94 0.002 22.5 2.4 22 98-119 66-87 (200)
426 PF14353 CpXC: CpXC protein 21.1 76 0.0017 20.7 1.8 28 101-128 1-49 (128)
427 TIGR00540 hemY_coli hemY prote 21.1 1.8E+02 0.0039 23.1 4.3 35 19-53 33-67 (409)
428 PF07069 PRRSV_2b: Porcine rep 21.1 1.8E+02 0.0039 16.7 4.8 43 27-70 29-71 (73)
429 PRK07758 hypothetical protein; 21.1 66 0.0014 20.3 1.4 18 140-157 23-40 (95)
430 TIGR02183 GRXA Glutaredoxin, G 21.0 33 0.00071 20.7 0.0 9 139-147 7-15 (86)
431 PRK08388 putative monovalent c 20.8 2.6E+02 0.0056 18.3 5.4 42 25-84 77-118 (119)
432 PF09986 DUF2225: Uncharacteri 20.8 81 0.0018 22.9 2.0 32 99-130 3-61 (214)
433 PF12729 4HB_MCP_1: Four helix 20.8 1.1E+02 0.0024 20.3 2.7 28 20-47 1-28 (181)
434 PF06692 MNSV_P7B: Melon necro 20.7 1.8E+02 0.0038 16.4 3.0 25 22-46 8-32 (61)
435 TIGR00847 ccoS cytochrome oxid 20.6 1.7E+02 0.0037 16.1 4.3 39 29-67 3-41 (51)
436 KOG0196 Tyrosine kinase, EPH ( 20.5 4.5E+02 0.0098 23.8 6.5 92 3-100 524-617 (996)
437 COG4068 Uncharacterized protei 20.5 57 0.0012 18.6 0.9 17 139-155 8-24 (64)
438 PF10013 DUF2256: Uncharacteri 20.4 58 0.0013 17.2 0.9 13 137-149 6-18 (42)
439 PRK00076 recR recombination pr 20.4 98 0.0021 22.3 2.3 23 97-119 61-83 (196)
440 PHA03281 envelope glycoprotein 20.4 2.2E+02 0.0048 24.1 4.5 57 5-61 533-589 (642)
441 PRK04023 DNA polymerase II lar 20.3 68 0.0015 29.1 1.8 52 96-153 621-677 (1121)
442 KOG1842 FYVE finger-containing 20.2 33 0.00072 27.9 -0.1 14 100-113 14-27 (505)
443 PRK14472 F0F1 ATP synthase sub 20.2 2.4E+02 0.0052 19.6 4.3 36 16-51 9-44 (175)
444 PF13913 zf-C2HC_2: zinc-finge 20.2 31 0.00068 15.7 -0.1 11 142-152 5-15 (25)
445 KOG0230 Phosphatidylinositol-4 20.2 43 0.00094 31.5 0.6 15 118-133 877-891 (1598)
446 PF00301 Rubredoxin: Rubredoxi 20.1 45 0.00098 18.0 0.5 8 141-148 36-43 (47)
447 PF12907 zf-met2: Zinc-binding 20.1 28 0.00061 18.2 -0.3 11 139-149 1-11 (40)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.9e-25 Score=165.21 Aligned_cols=81 Identities=35% Similarity=0.826 Sum_probs=68.1
Q ss_pred cCCCCHHHHhcCCcEeeecCCCCCCCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCC-CCcccccccc
Q 031354 72 TRGLDLTTINTLPIVLHRSEKSTKDDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARS-SCPLCRNSLR 150 (161)
Q Consensus 72 ~~~~~~~~i~~lp~~~~~~~~~~~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~ 150 (161)
.+.+.+..+.++|...|..... +... +.||||||+|++||.+|.|| |+|.||..|||+||..+. .||+||+++.
T Consensus 204 ~~r~~k~~l~~~p~~~f~~~~~--~~~~--~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 204 RNRLIKRLLKKLPVRTFTKGDD--EDAT--DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred hhhhHHHHHhhCCcEEeccccc--cCCC--ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 3567788999999999987662 2222 79999999999999999999 999999999999998774 5999999998
Q ss_pred CCCCCCC
Q 031354 151 VDSALPS 157 (161)
Q Consensus 151 ~~~~~~~ 157 (161)
.....+.
T Consensus 279 ~~~~~~~ 285 (348)
T KOG4628|consen 279 TDSGSEP 285 (348)
T ss_pred CCCCCCC
Confidence 7665543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.82 E-value=3.6e-21 Score=105.54 Aligned_cols=44 Identities=55% Similarity=1.265 Sum_probs=40.7
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccc
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCR 146 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 146 (161)
++|+||+++|.+++.+..++ |||+||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.71 E-value=8.7e-18 Score=122.12 Aligned_cols=77 Identities=30% Similarity=0.685 Sum_probs=59.6
Q ss_pred cCCCCHHHHhcCCcEeeecCCCCCCCCCCCCccccccccccCCCe----eeecCCCCCccchhhHHHHHcCCCCCccccc
Q 031354 72 TRGLDLTTINTLPIVLHRSEKSTKDDKEEESECCICLGVFEDGDK----VKILPKCRHCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 72 ~~~~~~~~i~~lp~~~~~~~~~~~~~~~~~~~CaICL~~f~~~~~----v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
.++..+..++.+|.+..+... ......+.+|+||++++.+++. +.++++|||.||.+||.+|+..+.+||+||.
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~--~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~ 224 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEK--LYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRT 224 (238)
T ss_pred hcchhHHHHHhcchhhhhhhh--hhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCC
Confidence 456678889999988655433 2233457899999999876542 3345459999999999999999999999999
Q ss_pred ccc
Q 031354 148 SLR 150 (161)
Q Consensus 148 ~l~ 150 (161)
++.
T Consensus 225 ~~~ 227 (238)
T PHA02929 225 PFI 227 (238)
T ss_pred Eee
Confidence 875
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.68 E-value=3.3e-17 Score=99.06 Aligned_cols=46 Identities=37% Similarity=0.988 Sum_probs=36.9
Q ss_pred CCCccccccccccC----------CCeeeecCCCCCccchhhHHHHHcCCCCCcccc
Q 031354 100 EESECCICLGVFED----------GDKVKILPKCRHCYHCECVDAWLSARSSCPLCR 146 (161)
Q Consensus 100 ~~~~CaICL~~f~~----------~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 146 (161)
.++.|+||+++|.+ +-.+...+ |||.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 35569999999943 23555567 999999999999999999999998
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.7e-17 Score=120.12 Aligned_cols=51 Identities=39% Similarity=1.053 Sum_probs=46.9
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHc-CCCCCccccccccC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS-ARSSCPLCRNSLRV 151 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~ 151 (161)
...+||||+++|-++|.+++|| |.|.||..|+++|+. -+..||+||.++.+
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4589999999999999999999 999999999999998 56779999999875
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.5e-15 Score=114.55 Aligned_cols=55 Identities=31% Similarity=0.849 Sum_probs=45.9
Q ss_pred CCCCCCCCcccccccc-ccCCC---------eeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 95 KDDKEEESECCICLGV-FEDGD---------KVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~-f~~~~---------~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
++..+++..|+||+|| |..+. .-..|| |||+||-+|+..|++++++||+||.++.
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 3446778899999999 66542 335688 9999999999999999999999999964
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.49 E-value=1.9e-14 Score=100.79 Aligned_cols=57 Identities=26% Similarity=0.716 Sum_probs=44.1
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----------------CCCCccccccccCCCCCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----------------RSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----------------~~~CP~CR~~l~~~~~~~ 156 (161)
....++.+|+||++.+++ ..+++ |||.||+.||.+|+.. +.+||+||.++......|
T Consensus 13 ~~~~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred ccCCCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 344567899999999864 34577 9999999999999852 347999999997654443
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.49 E-value=2.5e-14 Score=80.36 Aligned_cols=46 Identities=37% Similarity=0.927 Sum_probs=39.9
Q ss_pred CCccccccccccCCCeeeecCCCCCc-cchhhHHHHHcCCCCCcccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
+..|.||++...+ +..+| |||. |+..|+.+|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999999665 77889 9999 999999999999999999999885
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.4e-14 Score=102.72 Aligned_cols=53 Identities=28% Similarity=0.782 Sum_probs=45.2
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSA 154 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 154 (161)
......|.+|||...+ ..-+| |||+||+.||.+|+..+..||+||....+...
T Consensus 236 ~~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 4455799999998654 66788 99999999999999999999999999877653
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.46 E-value=4.9e-14 Score=75.01 Aligned_cols=39 Identities=38% Similarity=1.049 Sum_probs=33.6
Q ss_pred cccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccc
Q 031354 104 CCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLC 145 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 145 (161)
|+||++++.+ .+..++ |||+|+.+|+.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999876 556788 99999999999999998999998
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.44 E-value=8.5e-14 Score=76.04 Aligned_cols=44 Identities=45% Similarity=1.193 Sum_probs=37.7
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSL 149 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l 149 (161)
.|+||++.+ .+.+...+ |||.||..|++.|++. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 45566677 9999999999999987 77899999764
No 12
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.42 E-value=1.5e-13 Score=83.89 Aligned_cols=52 Identities=35% Similarity=0.929 Sum_probs=39.8
Q ss_pred CCCccccccccccC--------CCee-eecCCCCCccchhhHHHHHcC---CCCCccccccccC
Q 031354 100 EESECCICLGVFED--------GDKV-KILPKCRHCYHCECVDAWLSA---RSSCPLCRNSLRV 151 (161)
Q Consensus 100 ~~~~CaICL~~f~~--------~~~v-~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l~~ 151 (161)
+++.|.||...|.. |+.. .++..|+|.||..||.+|+.. +..||+||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 47899999999883 3321 123349999999999999985 4679999998653
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.4e-13 Score=98.12 Aligned_cols=55 Identities=31% Similarity=0.840 Sum_probs=43.7
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC---CCCccccccccCCCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR---SSCPLCRNSLRVDSALP 156 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~~~~~~~ 156 (161)
.....+|.||||. .+|.| ++. |||.||+.||-+||+.+ +.||+||..+..+.-+|
T Consensus 44 ~~~~FdCNICLd~--akdPV-vTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 44 DGGFFDCNICLDL--AKDPV-VTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCCceeeeeeccc--cCCCE-Eee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 4667899999998 44555 444 99999999999999864 56999999997665444
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.9e-13 Score=110.34 Aligned_cols=55 Identities=33% Similarity=0.777 Sum_probs=47.5
Q ss_pred CCCCCCccccccccccCCCe--eeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 97 DKEEESECCICLGVFEDGDK--VKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~--v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
....++.|+||+|++..++. ...+| |||+||..|+.+|++++++||+||..+...
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred hhhcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 34558899999999998765 77889 999999999999999999999999955433
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=99.33 E-value=8.8e-13 Score=93.63 Aligned_cols=53 Identities=32% Similarity=0.839 Sum_probs=41.1
Q ss_pred CCCCCccccccccccCC-----CeeeecCCCCCccchhhHHHHHcCC------CCCcccccccc
Q 031354 98 KEEESECCICLGVFEDG-----DKVKILPKCRHCYHCECVDAWLSAR------SSCPLCRNSLR 150 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~-----~~v~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~l~ 150 (161)
...+.+|+||+|..-++ ....+|++|+|.||..||..|...+ .+||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45678999999986432 2344676799999999999999753 35999998875
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.32 E-value=1.5e-12 Score=71.05 Aligned_cols=44 Identities=23% Similarity=0.782 Sum_probs=38.8
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
.|.||+++|.++...++++ |||+|+..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996667788888 9999999999999866678999985
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.26 E-value=2.8e-12 Score=68.91 Aligned_cols=39 Identities=49% Similarity=1.200 Sum_probs=33.2
Q ss_pred cccccccccCCCeeeecCCCCCccchhhHHHHHc--CCCCCccc
Q 031354 104 CCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS--ARSSCPLC 145 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~C 145 (161)
|+||++.+.+. ++.++ |||.|+..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999997753 35788 999999999999998 45679998
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.2e-12 Score=87.10 Aligned_cols=56 Identities=27% Similarity=0.596 Sum_probs=45.3
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
.....-..|+|||+.+.+...+ -+. |||+||..||..-++....||+||..|..+.
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~v-sTk-CGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVPV-STK-CGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccccccCCCceecchhhcccc-ccc-cchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 3344458999999999876554 245 9999999999999999999999998776543
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.23 E-value=7.9e-12 Score=65.85 Aligned_cols=38 Identities=37% Similarity=1.048 Sum_probs=32.7
Q ss_pred cccccccccCCCeeeecCCCCCccchhhHHHHHc-CCCCCccc
Q 031354 104 CCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS-ARSSCPLC 145 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~C 145 (161)
|+||++. ......++ |||.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998 34577888 999999999999998 56779987
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.22 E-value=1.1e-11 Score=66.78 Aligned_cols=38 Identities=39% Similarity=0.945 Sum_probs=29.2
Q ss_pred cccccccccCCCeeeecCCCCCccchhhHHHHHcCC----CCCccc
Q 031354 104 CCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR----SSCPLC 145 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~C 145 (161)
|+||++.|.+ -..|+ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999986 55788 99999999999999764 359988
No 21
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.20 E-value=8.6e-12 Score=74.18 Aligned_cols=52 Identities=29% Similarity=0.749 Sum_probs=37.9
Q ss_pred Ccccccccccc-----------CCCeee-ecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 102 SECCICLGVFE-----------DGDKVK-ILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 102 ~~CaICL~~f~-----------~~~~v~-~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
+.|+||...|- .+++.. +-..|+|.||..||..||..+..||++|+......
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 56777765443 344332 22239999999999999999999999999876543
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.16 E-value=3.4e-11 Score=70.68 Aligned_cols=51 Identities=27% Similarity=0.563 Sum_probs=42.9
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCC
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 156 (161)
..|+||++.+.+ . .+++ |||+|...||.+|++.+.+||+|+.++...+..+
T Consensus 2 ~~Cpi~~~~~~~--P-v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~ 52 (63)
T smart00504 2 FLCPISLEVMKD--P-VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIP 52 (63)
T ss_pred cCCcCCCCcCCC--C-EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhcee
Confidence 469999999876 3 3578 9999999999999998889999999986655444
No 23
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.9e-11 Score=88.00 Aligned_cols=56 Identities=21% Similarity=0.657 Sum_probs=45.6
Q ss_pred CCCCCCCccccccccccCCC-------eeeecCCCCCccchhhHHHHHc--CCCCCccccccccCC
Q 031354 96 DDKEEESECCICLGVFEDGD-------KVKILPKCRHCYHCECVDAWLS--ARSSCPLCRNSLRVD 152 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~-------~v~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~l~~~ 152 (161)
....++..||||-..+.... ....|. |+|+||..||.-|.. ++++||.|+..+..+
T Consensus 219 tkhl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 219 TKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 34567889999988877655 667888 999999999999976 578999998877644
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1.4e-10 Score=90.27 Aligned_cols=51 Identities=27% Similarity=0.666 Sum_probs=43.2
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
......|+||++.|.+ ..+++ |||.||..||..|+..+..||+||..+...
T Consensus 23 Le~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 23 LDTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 4456799999999864 23678 999999999999999888899999988654
No 25
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.04 E-value=1.5e-10 Score=64.31 Aligned_cols=42 Identities=29% Similarity=0.841 Sum_probs=33.0
Q ss_pred ccccccccccCCCeeeecCCCC-----CccchhhHHHHHcC--CCCCcccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCR-----HCYHCECVDAWLSA--RSSCPLCR 146 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR 146 (161)
.|.||+++.. ++...+.| |. |.+|..|+++|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~~-~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999444 44455789 85 99999999999965 45899995
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.2e-11 Score=71.18 Aligned_cols=50 Identities=32% Similarity=0.923 Sum_probs=36.9
Q ss_pred CCccccccccccC--------CCeee-ecCCCCCccchhhHHHHHcCC---CCCcccccccc
Q 031354 101 ESECCICLGVFED--------GDKVK-ILPKCRHCYHCECVDAWLSAR---SSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~--------~~~v~-~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~ 150 (161)
++.|-||...|.. ||..- ++--|.|.||..||.+|+... ..||+||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3489999988874 33221 222399999999999999753 46999998754
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.3e-10 Score=83.26 Aligned_cols=51 Identities=27% Similarity=0.676 Sum_probs=41.9
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHH-HHcCCCC-CccccccccCCC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDA-WLSARSS-CPLCRNSLRVDS 153 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~-Wl~~~~~-CP~CR~~l~~~~ 153 (161)
..+..|+||+++... ...+| |||+|+..||.. |-.++.. ||+||+...++.
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 456789999998654 55677 999999999999 9877765 999999887654
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.7e-10 Score=90.28 Aligned_cols=51 Identities=29% Similarity=0.853 Sum_probs=39.9
Q ss_pred CCCccccccccccC---CC-------e----eeecCCCCCccchhhHHHHHc-CCCCCccccccccC
Q 031354 100 EESECCICLGVFED---GD-------K----VKILPKCRHCYHCECVDAWLS-ARSSCPLCRNSLRV 151 (161)
Q Consensus 100 ~~~~CaICL~~f~~---~~-------~----v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~ 151 (161)
.-..|+||+.+..- +. . -.++| |.|+||..|+.+|+. .+-.||+||+++.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34689999987653 11 1 22458 999999999999999 56689999999864
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.82 E-value=3.4e-09 Score=57.04 Aligned_cols=38 Identities=29% Similarity=0.768 Sum_probs=22.4
Q ss_pred cccccccccC-CCeeeecCCCCCccchhhHHHHHcCC----CCCc
Q 031354 104 CCICLGVFED-GDKVKILPKCRHCYHCECVDAWLSAR----SSCP 143 (161)
Q Consensus 104 CaICL~~f~~-~~~v~~lp~C~H~FH~~Ci~~Wl~~~----~~CP 143 (161)
|+||.+ |.+ ...-.+|+ |||+|+.+||++++... -.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 755 34556799 99999999999999843 2477
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.8e-09 Score=85.11 Aligned_cols=52 Identities=29% Similarity=0.749 Sum_probs=40.1
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC-----CCCccccccccCCCCCC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR-----SSCPLCRNSLRVDSALP 156 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~l~~~~~~~ 156 (161)
+..|+|||++.. +-++..|||+||..||-+++... ..||+||..|...+..|
T Consensus 186 ~~~CPICL~~~~----~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPS----VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCC----cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 789999999854 33333399999999999988642 46999999998755443
No 31
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.81 E-value=2.4e-09 Score=83.15 Aligned_cols=53 Identities=30% Similarity=0.821 Sum_probs=43.3
Q ss_pred CCCCCCCCccccccccccCCC-eeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 95 KDDKEEESECCICLGVFEDGD-KVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~-~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
.....+.+.|+||||.+.+.- .++... |.|.||..|+.+|.. .+||+||....
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeee-cccccchHHHhhccc--CcChhhhhhcC
Confidence 455667889999999987654 455666 999999999999964 67999998766
No 32
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.78 E-value=1.2e-09 Score=65.36 Aligned_cols=51 Identities=29% Similarity=0.742 Sum_probs=24.6
Q ss_pred CCccccccccccCCC--eeeecC--CCCCccchhhHHHHHcC----C-------CCCccccccccC
Q 031354 101 ESECCICLGVFEDGD--KVKILP--KCRHCYHCECVDAWLSA----R-------SSCPLCRNSLRV 151 (161)
Q Consensus 101 ~~~CaICL~~f~~~~--~v~~lp--~C~H~FH~~Ci~~Wl~~----~-------~~CP~CR~~l~~ 151 (161)
+.+|.||.+.+.+++ ...+-+ .|++.||..||.+||+. + .+||.|+.+|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 458999999876333 223332 59999999999999963 1 259999998854
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.72 E-value=1.1e-08 Score=76.90 Aligned_cols=54 Identities=26% Similarity=0.483 Sum_probs=40.0
Q ss_pred CCcccccccc--ccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccccCCCCC
Q 031354 101 ESECCICLGV--FEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVDSAL 155 (161)
Q Consensus 101 ~~~CaICL~~--f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~ 155 (161)
+..|++|..+ +.+.-.+.+.+ |||.||..|++..+.. ...||.|+.++....-.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 4689999995 32222334446 9999999999996654 56799999998877633
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.71 E-value=4.4e-09 Score=79.13 Aligned_cols=51 Identities=27% Similarity=0.682 Sum_probs=43.2
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
...-..|.||.|.|.. -.++| |+|.||.-||...|..+..||.|+.++.+.
T Consensus 20 lD~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred hHHHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 3445689999999975 45677 999999999999999999999999887543
No 35
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.9e-09 Score=64.93 Aligned_cols=28 Identities=36% Similarity=1.020 Sum_probs=25.7
Q ss_pred CCCCccchhhHHHHHcCCCCCccccccc
Q 031354 122 KCRHCYHCECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 122 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 149 (161)
.|+|.||-.||..||+.+..||+|.++-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 3999999999999999999999998764
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.1e-08 Score=77.71 Aligned_cols=49 Identities=35% Similarity=0.819 Sum_probs=41.8
Q ss_pred CCCCccccccccccCCCeeeecCCCCCc-cchhhHHHHHcCCCCCccccccccC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
+...+|.|||.+-.+ ..+|| |.|. .|..|-+...-.+..||+||+++..
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 446799999999665 77999 9997 9999999976567789999999864
No 37
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=8.8e-09 Score=78.72 Aligned_cols=48 Identities=25% Similarity=0.803 Sum_probs=36.9
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC---CCCcccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR---SSCPLCRNS 148 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~ 148 (161)
...|.||.+-+.....+.-+..|||+||..|+.+|+..- .+||.||-.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 357999955555555666555699999999999999853 479999933
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.65 E-value=4.9e-09 Score=87.83 Aligned_cols=56 Identities=32% Similarity=0.829 Sum_probs=40.7
Q ss_pred CCCCCCCCccccccccccCCC---eeeecCCCCCccchhhHHHHHcC--CCCCcccccccc
Q 031354 95 KDDKEEESECCICLGVFEDGD---KVKILPKCRHCYHCECVDAWLSA--RSSCPLCRNSLR 150 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~---~v~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 150 (161)
.....+.++||||..-+..-| .-...|+|.|-||..|+-+|++. +.+||+||.++.
T Consensus 1463 ~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1463 DEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 445566889999988765211 11123348899999999999985 567999998764
No 39
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.63 E-value=2e-08 Score=60.68 Aligned_cols=54 Identities=28% Similarity=0.546 Sum_probs=40.4
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccccCCCCCCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~~~ 157 (161)
+...|+|+.+-|.+ -.++| +||.|-..||.+|+.. +.+||+|+.++...+.+|.
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred cccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence 34689999999875 44678 9999999999999998 7899999999987766553
No 40
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=98.62 E-value=1.2e-08 Score=75.57 Aligned_cols=55 Identities=25% Similarity=0.800 Sum_probs=45.4
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-----------------------CCCCccccccccCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-----------------------RSSCPLCRNSLRVD 152 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-----------------------~~~CP~CR~~l~~~ 152 (161)
.......|+|||.-|.+++...+++ |.|+||..|+..+|.. +..||+||..|..+
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 3444669999999999999999999 9999999998877621 23599999998755
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.49 E-value=6.6e-08 Score=71.50 Aligned_cols=49 Identities=22% Similarity=0.483 Sum_probs=40.2
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
...-..|-||-+.|.. -..++ |||.||.-||...|..+..||+||.+..
T Consensus 22 LDs~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 22 LDSMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred chhHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence 4456689999887763 23455 9999999999999999999999998754
No 42
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.1e-08 Score=73.71 Aligned_cols=47 Identities=36% Similarity=0.780 Sum_probs=40.6
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
...+...|+||++.|.+- .++| |||.|+..|+..++.....||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 445677999999999986 7889 9999999999999985567999993
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.46 E-value=2.7e-08 Score=82.04 Aligned_cols=53 Identities=25% Similarity=0.470 Sum_probs=46.4
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
.....|++||..+.++......+ |+|+||..|++.|-+.-++||+||..+...
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 34568999999999888887777 999999999999999999999999887543
No 44
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.4e-07 Score=52.25 Aligned_cols=46 Identities=30% Similarity=0.650 Sum_probs=34.3
Q ss_pred CCccccccccccCCCeeeecCCCCCc-cchhhHHHHHc-CCCCCcccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLS-ARSSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~-~~~~CP~CR~~l~ 150 (161)
+++|.||.|.-.+ .| |..|||+ .+.+|-.+-++ -+..||+||+++.
T Consensus 7 ~dECTICye~pvd--sV--lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVD--SV--LYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcch--HH--HHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 3899999997443 22 3349998 88888555444 6889999999875
No 45
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.34 E-value=1.5e-07 Score=72.52 Aligned_cols=52 Identities=31% Similarity=0.730 Sum_probs=42.6
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC--CCCCccccccccCCCCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA--RSSCPLCRNSLRVDSAL 155 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~~~~~ 155 (161)
..+.|-||-|. +..|.+-| |||..|..|+..|-.. .++||.||.+|...+++
T Consensus 368 TFeLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 368 TFELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred hHHHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 35689999886 34588889 9999999999999854 57899999999766543
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.5e-07 Score=71.07 Aligned_cols=52 Identities=35% Similarity=0.903 Sum_probs=40.9
Q ss_pred CCCCccccccccccCCC----eeeecCCCCCccchhhHHHHHcC-------CCCCcccccccc
Q 031354 99 EEESECCICLGVFEDGD----KVKILPKCRHCYHCECVDAWLSA-------RSSCPLCRNSLR 150 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~----~v~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~l~ 150 (161)
..+.+|.||++...+.. ....||+|.|.|+..||+.|-.. .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 55789999999876543 23456889999999999999843 357999998764
No 47
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7e-07 Score=63.88 Aligned_cols=56 Identities=21% Similarity=0.644 Sum_probs=46.8
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC--------CCCCccccccccCCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA--------RSSCPLCRNSLRVDS 153 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~l~~~~ 153 (161)
..+.-...|..|-..++.||.+|.. |-|+||++|+++|-.. ...||-|..+|.++-
T Consensus 45 ~DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 45 QDSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred hhcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 3455667899999999999999876 9999999999999754 236999999998653
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.27 E-value=2e-07 Score=53.73 Aligned_cols=47 Identities=23% Similarity=0.769 Sum_probs=23.0
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
-.|.+|.+-++ +.|.+.. |.|+|+..||..-+. ..||+|+.+....+
T Consensus 8 LrCs~C~~~l~--~pv~l~~-CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILK--EPVCLGG-CEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--S--S-B---S-SS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred cCCcHHHHHhc--CCceecc-CccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 46999988865 3444444 999999999988443 45999999876543
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=6.3e-07 Score=69.19 Aligned_cols=49 Identities=29% Similarity=0.864 Sum_probs=37.9
Q ss_pred CCCccccccccccC-CCeeeecCCCCCccchhhHHHHHcC--CCCCcccccc
Q 031354 100 EESECCICLGVFED-GDKVKILPKCRHCYHCECVDAWLSA--RSSCPLCRNS 148 (161)
Q Consensus 100 ~~~~CaICL~~f~~-~~~v~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~ 148 (161)
....|+|||++++- ++...+.+.|||.|-.+||++||-+ +..||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 45689999999985 5544455559999999999999963 2459999654
No 50
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.3e-07 Score=71.66 Aligned_cols=57 Identities=25% Similarity=0.556 Sum_probs=45.5
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccccCCCCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~~~ 157 (161)
...+..|+|||+=++. -+..+.|.|.||.+||.+-++. +.+||.||..+...-.+-+
T Consensus 40 ~~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~ 97 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRI 97 (381)
T ss_pred hhhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCC
Confidence 4457799999998775 4455569999999999999875 6789999999977655543
No 51
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=98.09 E-value=1.1e-06 Score=58.33 Aligned_cols=36 Identities=22% Similarity=0.582 Sum_probs=30.5
Q ss_pred CCccccccccccCCCeeeecCCCC------CccchhhHHHHHc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCR------HCYHCECVDAWLS 137 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~------H~FH~~Ci~~Wl~ 137 (161)
..+|+||++.+.+++.|..++ || |+||.+|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHh
Confidence 569999999999966666677 87 9999999999943
No 52
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.7e-06 Score=71.55 Aligned_cols=49 Identities=24% Similarity=0.676 Sum_probs=39.0
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHc-CCCCCccccccccCCCC
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS-ARSSCPLCRNSLRVDSA 154 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~~ 154 (161)
-.|++|-+.+++ +.++. |||+||..|+.+-+. ++..||.|...+-.++-
T Consensus 644 LkCs~Cn~R~Kd---~vI~k-C~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 644 LKCSVCNTRWKD---AVITK-CGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred eeCCCccCchhh---HHHHh-cchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 489999987665 43444 999999999999987 56779999888766543
No 53
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.3e-06 Score=62.92 Aligned_cols=50 Identities=22% Similarity=0.511 Sum_probs=39.3
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccccCC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVD 152 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 152 (161)
....+|+||+-... .-..|+ |+|.|+..||.--..+ +.+||+||+++...
T Consensus 5 ~~~~eC~IC~nt~n---~Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 5 TKKKECLICYNTGN---CPVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred ccCCcceeeeccCC---cCcccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 35678999988743 334677 9999999999987665 46799999999754
No 54
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=6.1e-06 Score=64.75 Aligned_cols=51 Identities=35% Similarity=0.846 Sum_probs=43.1
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
....+.+|.||..-+.+ ..++| |||.|+..||++=+.....||.||.++..
T Consensus 80 ~~~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 34667899999888765 55678 99999999999977777889999999875
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.94 E-value=5.2e-06 Score=65.48 Aligned_cols=56 Identities=34% Similarity=0.724 Sum_probs=46.8
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 156 (161)
...+..|++|...+.+- +..+. |||.|+..|+.+|+..+..||.|+..+.....+|
T Consensus 18 ~~~~l~C~~C~~vl~~p--~~~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP--VQTTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCC--CCCCC-CCCcccccccchhhccCcCCcccccccchhhccC
Confidence 45667999999998753 32245 9999999999999999999999999998887776
No 56
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.90 E-value=6.6e-06 Score=72.32 Aligned_cols=54 Identities=28% Similarity=0.685 Sum_probs=44.9
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC----------CCCccccccccC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR----------SSCPLCRNSLRV 151 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~~l~~ 151 (161)
....++.|.||+.|--.......|. |+|+||-.|...-|+++ .+||+|+.+|..
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 4566889999999877777888898 99999999998877653 269999998864
No 57
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.88 E-value=4.3e-06 Score=64.45 Aligned_cols=46 Identities=33% Similarity=0.779 Sum_probs=38.2
Q ss_pred CCCccccccccccCCC-eeeecCCCCCccchhhHHHHHcCC--CCCcccc
Q 031354 100 EESECCICLGVFEDGD-KVKILPKCRHCYHCECVDAWLSAR--SSCPLCR 146 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~-~v~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR 146 (161)
-+-.|-.|=+.+..++ .+.-|| |.|+||..|+.+.|.++ .+||-||
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3557999988776544 677799 99999999999999876 5699998
No 58
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.85 E-value=1.6e-05 Score=45.44 Aligned_cols=44 Identities=30% Similarity=0.562 Sum_probs=29.7
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC--CCCCcc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA--RSSCPL 144 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~ 144 (161)
......|+|.+..|+ +.|+-.. |||+|-.+.|.+|+.+ ...||+
T Consensus 8 ~~~~~~CPiT~~~~~--~PV~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFE--DPVKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-S--SEEEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cEeccCCCCcCChhh--CCcCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 345678999999987 6777667 9999999999999954 346998
No 59
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.80 E-value=1.4e-05 Score=43.83 Aligned_cols=40 Identities=35% Similarity=0.982 Sum_probs=27.8
Q ss_pred cccccccccCCCeeeecCCCC-----CccchhhHHHHHc--CCCCCccc
Q 031354 104 CCICLGVFEDGDKVKILPKCR-----HCYHCECVDAWLS--ARSSCPLC 145 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~C 145 (161)
|-||+++-.+++.+ +.| |+ -..|.+|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67999987776633 567 75 4789999999997 45679987
No 60
>PHA02862 5L protein; Provisional
Probab=97.72 E-value=2.5e-05 Score=52.30 Aligned_cols=47 Identities=23% Similarity=0.735 Sum_probs=35.7
Q ss_pred CCccccccccccCCCeeeecCCCC-----CccchhhHHHHHcC--CCCCccccccccCC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCR-----HCYHCECVDAWLSA--RSSCPLCRNSLRVD 152 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~~ 152 (161)
.+.|=||+++-+ +.+ -| |. ..-|.+|+.+|+.. +..||+|+.+....
T Consensus 2 ~diCWIC~~~~~--e~~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCD--ERN--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCC--CCc--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 467999999843 333 45 64 57899999999974 45799999988644
No 61
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=3.3e-05 Score=59.12 Aligned_cols=50 Identities=24% Similarity=0.626 Sum_probs=37.0
Q ss_pred CCCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 95 KDDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
.......+.|.||+++.++ ...+| |||+=+ |...-... .+||+||+.|..
T Consensus 299 ~~~~~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~~l-~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSKHL-PQCPVCRQRIRL 348 (355)
T ss_pred ccccCCCCceEEecCCccc---eeeec-CCcEEE--chHHHhhC-CCCchhHHHHHH
Confidence 4455667899999999877 66778 999944 66664332 459999988753
No 62
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=97.56 E-value=3.1e-05 Score=64.97 Aligned_cols=53 Identities=25% Similarity=0.612 Sum_probs=42.7
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-------CCCCccccccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-------RSSCPLCRNSL 149 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~l 149 (161)
.+....+|.||.+.+...+.+.--..|.|+||..||.+|-+. ...||-|+...
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 344566999999999988888776669999999999999864 23699998443
No 63
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.51 E-value=2.5e-05 Score=59.02 Aligned_cols=59 Identities=22% Similarity=0.550 Sum_probs=48.3
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPSI 158 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~ 158 (161)
.......|.+|-..|.+...+ .. |-|.||..||-+.|.....||+|...+....++..+
T Consensus 11 ~~n~~itC~LC~GYliDATTI--~e-CLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni 69 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTI--TE-CLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNI 69 (331)
T ss_pred hcccceehhhccceeecchhH--HH-HHHHHHHHHHHHHHHHhccCCccceeccCccccccC
Confidence 345677999999988875555 34 999999999999999999999999988777665554
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.00013 Score=53.14 Aligned_cols=56 Identities=14% Similarity=0.279 Sum_probs=49.2
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSAL 155 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 155 (161)
....|+||.+.+.+.-.+.+|.+|||+|..+|.++.+.....||+|-.++...+-+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 45689999999999888888888999999999999998889999999888766533
No 65
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=3.5e-05 Score=52.55 Aligned_cols=32 Identities=44% Similarity=0.870 Sum_probs=28.4
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccch
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHC 129 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~ 129 (161)
...+..+|.||||+++.|+.+..|| |--+||+
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 3445669999999999999999999 9999996
No 66
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.47 E-value=4.2e-05 Score=55.62 Aligned_cols=53 Identities=30% Similarity=0.684 Sum_probs=38.6
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCCCCC
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPSIT 159 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~~ 159 (161)
.|..|. -+.+++...++. |+|+||..|...=.. ..||+||.++....-.++++
T Consensus 5 hCn~C~-~~~~~~~f~LTa-C~HvfC~~C~k~~~~--~~C~lCkk~ir~i~l~~slp 57 (233)
T KOG4739|consen 5 HCNKCF-RFPSQDPFFLTA-CRHVFCEPCLKASSP--DVCPLCKKSIRIIQLNRSLP 57 (233)
T ss_pred Eecccc-ccCCCCceeeee-chhhhhhhhcccCCc--cccccccceeeeeecccccc
Confidence 466664 345588898888 999999999876322 38999999987655554443
No 67
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.42 E-value=9e-05 Score=59.48 Aligned_cols=60 Identities=27% Similarity=0.666 Sum_probs=45.8
Q ss_pred CCCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-----CCCCccccccccCCCCCCCC
Q 031354 95 KDDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-----RSSCPLCRNSLRVDSALPSI 158 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~l~~~~~~~~~ 158 (161)
.....+..+|-+|-++-++ ..+.. |.|.||.-||.++... +-+||.|...+..+...|.+
T Consensus 530 ~~enk~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~al 594 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPAL 594 (791)
T ss_pred CccccCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhh
Confidence 4445567799999887433 55666 9999999999888743 46799999999877666654
No 68
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.41 E-value=0.00017 Score=49.30 Aligned_cols=52 Identities=21% Similarity=0.615 Sum_probs=38.4
Q ss_pred CCCCCCccccccccccCCCeeeecCCCC--C---ccchhhHHHHHcCC--CCCccccccccCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCR--H---CYHCECVDAWLSAR--SSCPLCRNSLRVDS 153 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~--H---~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~ 153 (161)
.+..+..|=||.++-. +.. -| |. . .-|.+|+..|+..+ .+||+|+.+.....
T Consensus 4 ~s~~~~~CRIC~~~~~--~~~--~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 4 VSLMDKCCWICKDEYD--VVT--NY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred cCCCCCeeEecCCCCC--Ccc--CC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 3556789999998843 222 46 65 3 57999999999753 56999999886553
No 69
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.38 E-value=8.9e-05 Score=47.79 Aligned_cols=34 Identities=24% Similarity=0.713 Sum_probs=28.1
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHH
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVD 133 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~ 133 (161)
......|++|-..+.. ..+.+.| |||+||..|++
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 3456789999999987 5666788 99999999975
No 70
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0019 Score=47.89 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=39.2
Q ss_pred CCCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC--CCCCcccccccc
Q 031354 95 KDDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA--RSSCPLCRNSLR 150 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 150 (161)
......+.+|++|-+.-. -.....+ |||+||.-||..=+.- .-+||.|-.+..
T Consensus 233 ss~~t~~~~C~~Cg~~Pt--iP~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPT--IPHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccCCceeeccCCCCC--CCeeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 344567889999966522 3344566 9999999999997663 357999988776
No 71
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0009 Score=50.79 Aligned_cols=52 Identities=12% Similarity=0.337 Sum_probs=40.4
Q ss_pred CCCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccc
Q 031354 95 KDDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 149 (161)
.........|+||+..-++.-.+.+ =|-+||..|+-+.+.+++.||+=..++
T Consensus 294 e~l~~~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 294 ELLPPDREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccCCCccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 4556677899999998766433322 589999999999999999999855443
No 72
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=1.4e-05 Score=61.61 Aligned_cols=57 Identities=25% Similarity=0.586 Sum_probs=48.0
Q ss_pred CCCCCCCCccccccccccCC-CeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 95 KDDKEEESECCICLGVFEDG-DKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~-~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
.........|+||.+.++.. +.+..+- |||.+|..||.+||..+..||.||+.+...
T Consensus 190 ~~~~slv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 190 QPTSSLVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred CchHHHHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 34455667999999999886 6777777 999999999999999988899999988643
No 73
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.19 E-value=0.0002 Score=50.53 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=37.8
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 149 (161)
...|.||-.+|+. -.++. |||.||..|...-++....|-+|....
T Consensus 196 PF~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 4589999999985 33555 999999999999888889999997654
No 74
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.15 E-value=0.00039 Score=38.01 Aligned_cols=45 Identities=20% Similarity=0.461 Sum_probs=20.9
Q ss_pred cccccccccC-CCeeeecCCCCCccchhhHHHHHc-CCCCCccccccc
Q 031354 104 CCICLGVFED-GDKVKILPKCRHCYHCECVDAWLS-ARSSCPLCRNSL 149 (161)
Q Consensus 104 CaICL~~f~~-~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l 149 (161)
|++|.+++.. +..+.--+ ||+..+..|...-+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899999833 22443344 778888888777665 367899999875
No 75
>PHA03096 p28-like protein; Provisional
Probab=97.15 E-value=0.00021 Score=53.95 Aligned_cols=48 Identities=19% Similarity=0.462 Sum_probs=35.3
Q ss_pred CccccccccccCC----CeeeecCCCCCccchhhHHHHHcCC---CC---Cccccccc
Q 031354 102 SECCICLGVFEDG----DKVKILPKCRHCYHCECVDAWLSAR---SS---CPLCRNSL 149 (161)
Q Consensus 102 ~~CaICL~~f~~~----~~v~~lp~C~H~FH~~Ci~~Wl~~~---~~---CP~CR~~l 149 (161)
-.|.||++...+. ..-..|++|.|.|+..|+..|-..+ .+ ||.||..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 5799999987753 2444688899999999999998643 33 55555444
No 76
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0002 Score=55.73 Aligned_cols=49 Identities=24% Similarity=0.636 Sum_probs=39.0
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC--------CCCccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR--------SSCPLCRN 147 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~--------~~CP~CR~ 147 (161)
......|-||+++..-.+....+| |+|+|+..|+..++... -.||-+..
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HhhcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 344568999999987668888999 99999999999998542 24877654
No 77
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.12 E-value=0.0002 Score=53.71 Aligned_cols=55 Identities=29% Similarity=0.689 Sum_probs=42.0
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHc-CCCCCccc-cccccCCCCCCCCC
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS-ARSSCPLC-RNSLRVDSALPSIT 159 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~C-R~~l~~~~~~~~~~ 159 (161)
..|+.|-.-+.+ .++ +|.|||.|+.+||..-|. ....||.| |.++..+...|+++
T Consensus 275 LkCplc~~Llrn--p~k-T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~d 331 (427)
T COG5222 275 LKCPLCHCLLRN--PMK-TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDID 331 (427)
T ss_pred ccCcchhhhhhC--ccc-CccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHH
Confidence 579988665443 343 466999999999997766 45789999 77888888888764
No 78
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00012 Score=54.66 Aligned_cols=43 Identities=28% Similarity=0.685 Sum_probs=33.2
Q ss_pred CCccccccccccCCCeeeecCCCCCc-cchhhHHHHHcCCCCCccccccccC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
...|+||++.-.+ +..|+ |||. -+.+|-.. -..||+||+-+..
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHHH
Confidence 6789999998554 77899 9996 66677544 2479999987754
No 79
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0003 Score=52.56 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=39.5
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
...|-||-..|.. -.++. |+|.|+..|-.+=+++...|++|.++...
T Consensus 241 Pf~c~icr~~f~~---pVvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---PVVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred Ccccccccccccc---chhhc-CCceeehhhhccccccCCcceeccccccc
Confidence 4579999999985 33455 99999999999989988999999887654
No 80
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00079 Score=51.65 Aligned_cols=50 Identities=22% Similarity=0.501 Sum_probs=41.3
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
...+++.|+||...-. .-...| |+|.=|..||.+-+.+.+.|=.|+..+.
T Consensus 418 p~sEd~lCpICyA~pi---~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPI---NAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCcccccCcceecccc---hhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 3467889999977522 244567 9999999999999999999999998876
No 81
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.89 E-value=0.0011 Score=49.73 Aligned_cols=58 Identities=16% Similarity=0.381 Sum_probs=44.3
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSAL 155 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 155 (161)
.......|+|...+|........|-+|||+|-..++.+- .....||+|-.++...+-+
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDII 166 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEE
Confidence 356677999999999665555555449999999999996 3356799999988755433
No 82
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.88 E-value=0.00061 Score=51.00 Aligned_cols=47 Identities=26% Similarity=0.631 Sum_probs=39.2
Q ss_pred CCCccccccccccCCC-eeeecCCCCCccchhhHHHHHcCCCCCccccc
Q 031354 100 EESECCICLGVFEDGD-KVKILPKCRHCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~-~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
....|+||.+.+-.+. .+..++ |||.-|..|..+-...+.+||+|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 3444999999887765 556788 9999999999998887799999987
No 83
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.87 E-value=0.001 Score=50.93 Aligned_cols=50 Identities=34% Similarity=0.672 Sum_probs=38.2
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHH--HcCCCCCccccccc
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAW--LSARSSCPLCRNSL 149 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~W--l~~~~~CP~CR~~l 149 (161)
...++...|.||-+...- +.++| |+|-.|..|--.. |-.++.||+||.+-
T Consensus 56 dtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 56 DTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 445566789999887554 77899 9999988896543 34578899999864
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.78 E-value=0.00072 Score=37.87 Aligned_cols=46 Identities=30% Similarity=0.727 Sum_probs=32.4
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCC
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSA 154 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 154 (161)
.|..|... +..-.++| |||+-+..|.+- .+-.-||+|.+++...+.
T Consensus 9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~--~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPG--ERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred eEEEcccc---cccccccc-ccceeeccccCh--hhccCCCCCCCcccCCCC
Confidence 45555443 44455788 999999988776 345679999998876653
No 85
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.74 E-value=0.00097 Score=35.78 Aligned_cols=41 Identities=27% Similarity=0.727 Sum_probs=22.8
Q ss_pred cccccccccCCCeeeecCCCCCccchhhHHHHHcCCC--CCccc
Q 031354 104 CCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARS--SCPLC 145 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~C 145 (161)
|.+|-+-...|.....-. |+=.+|..|+..+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 566766555555554334 888999999999998765 79987
No 86
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0016 Score=49.62 Aligned_cols=48 Identities=29% Similarity=0.655 Sum_probs=39.4
Q ss_pred CCccccccccccCCC---eeeecCCCCCccchhhHHHHHcCC-CCCccccccc
Q 031354 101 ESECCICLGVFEDGD---KVKILPKCRHCYHCECVDAWLSAR-SSCPLCRNSL 149 (161)
Q Consensus 101 ~~~CaICL~~f~~~~---~v~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l 149 (161)
...|-||-++|..++ .-|+|. |||.|+..|+.+-+.+. ..||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 457999999999874 344566 99999999999987754 5699999986
No 87
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=96.51 E-value=0.0041 Score=34.83 Aligned_cols=35 Identities=34% Similarity=0.842 Sum_probs=30.6
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHH
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDA 134 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~ 134 (161)
....|++|=+.|++++.+.+-|.||-.+|.+|-++
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45689999999998888888999999999999654
No 88
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.28 E-value=0.0022 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.915 Sum_probs=20.8
Q ss_pred CCCccchhhHHHHHcCCCCCcc
Q 031354 123 CRHCYHCECVDAWLSARSSCPL 144 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~~~~CP~ 144 (161)
|+|+-|.+|..+|+.....||-
T Consensus 1048 C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1048 CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccHHHHHHHHhcCCcCCC
Confidence 9999999999999999999985
No 89
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0027 Score=44.23 Aligned_cols=30 Identities=30% Similarity=0.980 Sum_probs=24.5
Q ss_pred CCCccchhhHHHHHcC----C-------CCCccccccccCC
Q 031354 123 CRHCYHCECVDAWLSA----R-------SSCPLCRNSLRVD 152 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~----~-------~~CP~CR~~l~~~ 152 (161)
||.-||.-|+..||+. + ..||.|-.++..+
T Consensus 190 CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 190 CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 9999999999999964 1 2599998887543
No 90
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.003 Score=53.56 Aligned_cols=43 Identities=33% Similarity=0.799 Sum_probs=31.5
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 149 (161)
...|..|-..++- ..|- .- |||.||.+|+. .+...||-|+.++
T Consensus 840 ~skCs~C~~~Ldl-P~Vh-F~-CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDL-PFVH-FL-CGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCcccc-ceee-ee-cccHHHHHhhc---cCcccCCccchhh
Confidence 4689999776543 2333 33 99999999999 4456799998744
No 91
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=96.04 E-value=0.0044 Score=33.51 Aligned_cols=30 Identities=30% Similarity=0.765 Sum_probs=21.8
Q ss_pred CC-CccchhhHHHHHcCCCCCccccccccCC
Q 031354 123 CR-HCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 123 C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
|. |+.+..|+..-+.+...||+|..+++..
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 86 9999999999999999999999988653
No 92
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0033 Score=45.47 Aligned_cols=41 Identities=32% Similarity=0.697 Sum_probs=31.8
Q ss_pred cccccccccCCCeeeecCCCCCc-cchhhHHHHHcCCCCCccccccccCC
Q 031354 104 CCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
|-.|-+. +..|..+| |.|+ +|..|-.. -..||+|+.+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTSS 202 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhce
Confidence 8888665 56688999 9986 88899776 34599999876543
No 93
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.0037 Score=53.23 Aligned_cols=37 Identities=24% Similarity=0.610 Sum_probs=29.8
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHH
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWL 136 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl 136 (161)
...++.|.+|--.+... .-.+.| |||.||++||.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 45678999998777654 556788 99999999998876
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.84 E-value=0.0074 Score=46.25 Aligned_cols=55 Identities=24% Similarity=0.481 Sum_probs=36.5
Q ss_pred CCCCCCccccccccccCCCe-eeecCCCCCccchhhHHHHHc-CCCCCccccccccCC
Q 031354 97 DKEEESECCICLGVFEDGDK-VKILPKCRHCYHCECVDAWLS-ARSSCPLCRNSLRVD 152 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~-v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 152 (161)
.+.+++.|+.|+|++.-.|. ..-.| ||-..|.-|...--+ -+..||-||+-...+
T Consensus 10 sedeed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 45567789999999886553 33455 886655555333222 257899999987654
No 95
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.76 E-value=0.0042 Score=52.37 Aligned_cols=47 Identities=34% Similarity=0.718 Sum_probs=37.2
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHcCC--CCCccccccccCCC
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR--SSCPLCRNSLRVDS 153 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~ 153 (161)
..|.||++ .+.....+ |||.|+.+|+.+-+... ..||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 24455667 99999999999987643 45999999886553
No 96
>PHA02975 hypothetical protein; Provisional
Probab=95.61 E-value=0.012 Score=34.30 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCccc-----CCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 1 MASQESQPFHWHYT-----ELDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARW 50 (161)
Q Consensus 1 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~ 50 (161)
|+|.+.+.+.|.+. ..+++.......+++++++++++++++++.++|.+.
T Consensus 13 msS~DdDF~nFI~vVksVLtdk~~~~~~~~~~~~~ii~i~~v~~~~~~~flYLK~ 67 (69)
T PHA02975 13 LESNDSDFEDFIDTIMHVLTGKKEPKKKSSLSIILIIFIIFITCIAVFTFLYLKL 67 (69)
T ss_pred cCCChHHHHHHHHHHHHHHcCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666543 222223334444555555566666666666666554
No 97
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.56 E-value=0.0093 Score=46.48 Aligned_cols=55 Identities=25% Similarity=0.716 Sum_probs=34.4
Q ss_pred CCCCCCccccccccccC-------------CCeeeecCCCC-----CccchhhHHHHHcCC-------------CCCccc
Q 031354 97 DKEEESECCICLGVFED-------------GDKVKILPKCR-----HCYHCECVDAWLSAR-------------SSCPLC 145 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~-------------~~~v~~lp~C~-----H~FH~~Ci~~Wl~~~-------------~~CP~C 145 (161)
...+.+.|.-|+.+-.+ |......+.|. =+.|.+|+.+|+..+ -.||+|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 44567789999875433 11111112233 457889999999543 269999
Q ss_pred cccccC
Q 031354 146 RNSLRV 151 (161)
Q Consensus 146 R~~l~~ 151 (161)
|+....
T Consensus 347 Ra~FCi 352 (358)
T PF10272_consen 347 RAKFCI 352 (358)
T ss_pred ccccee
Confidence 997643
No 98
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=95.27 E-value=0.013 Score=44.84 Aligned_cols=52 Identities=25% Similarity=0.627 Sum_probs=38.8
Q ss_pred CCCccccccccccCCCe-eeecCCCC-----CccchhhHHHHHc--CCCCCccccccccCC
Q 031354 100 EESECCICLGVFEDGDK-VKILPKCR-----HCYHCECVDAWLS--ARSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~-v~~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~CR~~l~~~ 152 (161)
++..|=||.++...... ....| |. +..|..|++.|+. .+..|.+|.......
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 35789999998765432 34566 75 6789999999998 456799998876544
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.22 E-value=0.0052 Score=54.34 Aligned_cols=45 Identities=33% Similarity=0.876 Sum_probs=37.5
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
....|.||++.+.+.-.+. . |||.++..|...|+..+..||+|+.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~--~-cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIA--G-CGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCee--e-echhHhhhHHHHHHHHhccCcchhh
Confidence 3459999999988544332 2 9999999999999999999999974
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.0075 Score=45.64 Aligned_cols=44 Identities=27% Similarity=0.726 Sum_probs=30.6
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
.|.-| +|--.-.-|.+| |.|+||.+|-.. ...+.||.|--.+..
T Consensus 92 fCd~C--d~PI~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 92 FCDRC--DFPIAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred eeccc--CCcceeeecccc-cchhhhhhhhhc--CccccCcCcccHHHH
Confidence 56665 333334457889 999999999765 446789999766543
No 101
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=95.13 E-value=0.029 Score=47.74 Aligned_cols=62 Identities=24% Similarity=0.620 Sum_probs=46.0
Q ss_pred CCCCCCCCccccccccccCCCeeeecCCCC-----CccchhhHHHHHcC--CCCCcccccccc----CCCCCCCC
Q 031354 95 KDDKEEESECCICLGVFEDGDKVKILPKCR-----HCYHCECVDAWLSA--RSSCPLCRNSLR----VDSALPSI 158 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~~v~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~l~----~~~~~~~~ 158 (161)
.....+...|-||..|=..++++. -| |. -+.|.+|+.+|+.- +..|-+|+.++. -.+.+|++
T Consensus 6 ~~mN~d~~~CRICr~e~~~d~pLf-hP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~ 78 (1175)
T COG5183 6 TPMNEDKRSCRICRTEDIRDDPLF-HP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQI 78 (1175)
T ss_pred CCCCccchhceeecCCCCCCCcCc-cc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcc
Confidence 344566689999999988777763 35 64 46999999999974 456999998874 34566654
No 102
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=95.07 E-value=0.045 Score=28.54 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=27.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031354 22 QIRGRTLFSIIVVFAVVLLVSFLFLYARWFCRRFS 56 (161)
Q Consensus 22 ~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~~~ 56 (161)
.+++..++++.+++.+.+.++.+++|.+|..|++.
T Consensus 5 ~lp~GVIlVF~lVglv~i~iva~~iYRKw~aRkr~ 39 (43)
T PF08114_consen 5 TLPGGVILVFCLVGLVGIGIVALFIYRKWQARKRA 39 (43)
T ss_pred cCCCCeeeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777888888888888999998887743
No 103
>PHA02650 hypothetical protein; Provisional
Probab=95.03 E-value=0.022 Score=34.13 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=18.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 24 RGRTLFSIIVVFAVVLLVSFLFLYARWFCR 53 (161)
Q Consensus 24 ~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~ 53 (161)
...+.++++++++++++++++++|.+...|
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYLK~~~r 75 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVFKGYTR 75 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555666666666666666666665544
No 104
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.007 Score=50.02 Aligned_cols=45 Identities=27% Similarity=0.509 Sum_probs=33.8
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNS 148 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 148 (161)
...|.||+-.|....-.-+.+.|||..+..|+..- .+.+|| |+++
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence 45799999998876654444459999999999984 457888 6443
No 105
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.015 Score=48.11 Aligned_cols=55 Identities=31% Similarity=0.777 Sum_probs=45.3
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCCCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPSI 158 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~ 158 (161)
+.....+.|++|+++. ..+..+ |. |.-|+.+|+..+..||+|+..+..++.....
T Consensus 474 ~l~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~~ 528 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFLSKN 528 (543)
T ss_pred hhhcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccccCcc
Confidence 4455678999999997 566777 88 9999999999999999999988877665543
No 106
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.29 E-value=0.053 Score=37.23 Aligned_cols=35 Identities=20% Similarity=0.517 Sum_probs=22.2
Q ss_pred CCccccccccccCCCee---------eecCCCCC-ccchhhHHHHH
Q 031354 101 ESECCICLGVFEDGDKV---------KILPKCRH-CYHCECVDAWL 136 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v---------~~lp~C~H-~FH~~Ci~~Wl 136 (161)
+..|+||||--.+.--+ |-.- |+- .=|..|+|++-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHH
Confidence 56899999975542211 1111 553 45889999975
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.019 Score=45.41 Aligned_cols=41 Identities=29% Similarity=0.611 Sum_probs=30.9
Q ss_pred CCCCCcccccc-ccccCCCeeeecCCCCCccchhhHHHHHcCC
Q 031354 98 KEEESECCICL-GVFEDGDKVKILPKCRHCYHCECVDAWLSAR 139 (161)
Q Consensus 98 ~~~~~~CaICL-~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~ 139 (161)
.....+|.||. +.....+...+.. |+|.|+.+|..+.+..+
T Consensus 143 ~~~~~~C~iC~~e~~~~~~~f~~~~-C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 143 KLPKEECGICFVEDPEAEDMFSVLK-CGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccccCccCccccccHhhhHHHhc-ccchhhhHHhHHHhhhh
Confidence 34567999999 4444445666565 99999999999998754
No 108
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.026 Score=41.63 Aligned_cols=54 Identities=31% Similarity=0.751 Sum_probs=38.7
Q ss_pred CCCCCccccccccccCCCee-eecCCCC-----CccchhhHHHHHcCCC--------CCccccccccCC
Q 031354 98 KEEESECCICLGVFEDGDKV-KILPKCR-----HCYHCECVDAWLSARS--------SCPLCRNSLRVD 152 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v-~~lp~C~-----H~FH~~Ci~~Wl~~~~--------~CP~CR~~l~~~ 152 (161)
...+-.|-||+..=+++..- -+-| |. |=-|..|+..|+..++ +||-|+.+....
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 44566899999875553322 3456 63 7799999999996542 499999887543
No 109
>PHA02819 hypothetical protein; Provisional
Probab=93.36 E-value=0.085 Score=30.98 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=14.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Q 031354 24 RGRTLFSIIVVFAVVLLVSFLFLYAR 49 (161)
Q Consensus 24 ~~~~i~ii~~l~~~~l~~~~~~~~~~ 49 (161)
...+.+++++++.++++++++++|.+
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666666666666554
No 110
>PHA02844 putative transmembrane protein; Provisional
Probab=93.31 E-value=0.053 Score=32.17 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAVVLLVSFLFLYARW 50 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~~~~~~~ 50 (161)
..+..++++++++++++++.++|.+.
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK~ 71 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLKA 71 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 34555555555666666666665543
No 111
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=93.22 E-value=0.094 Score=35.06 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031354 32 IVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 32 ~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
+++++++++++++++++++.+||
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR 26 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRR 26 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 112
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=93.06 E-value=0.69 Score=29.92 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=22.7
Q ss_pred cCCCCCccchhhHHHHHcCCCCCccccccccCCCCCCCC
Q 031354 120 LPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPSI 158 (161)
Q Consensus 120 lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~ 158 (161)
.|+|+|.. +-+-+...|+.|++++..+..+..-
T Consensus 72 CP~C~K~T------KmLGr~D~CM~C~~pLTLd~~legk 104 (114)
T PF11023_consen 72 CPNCGKQT------KMLGRVDACMHCKEPLTLDPSLEGK 104 (114)
T ss_pred CCCCCChH------hhhchhhccCcCCCcCccCchhhcc
Confidence 35577762 2344556799999999988776543
No 113
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=92.71 E-value=0.091 Score=31.15 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 031354 26 RTLFSIIVVFAVVLLVSFLFLYA 48 (161)
Q Consensus 26 ~~i~ii~~l~~~~l~~~~~~~~~ 48 (161)
+++++++.++++++++++.++|.
T Consensus 47 ~~~~~ii~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 47 NWIILIISIIFVLIIVLLTFLYL 69 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555554
No 114
>PHA03054 IMV membrane protein; Provisional
Probab=92.47 E-value=0.13 Score=30.19 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=14.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Q 031354 24 RGRTLFSIIVVFAVVLLVSFLFLYAR 49 (161)
Q Consensus 24 ~~~~i~ii~~l~~~~l~~~~~~~~~~ 49 (161)
...+.+++++++.+++++++.++|.+
T Consensus 45 ~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555556566666656665543
No 115
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=0.081 Score=39.92 Aligned_cols=28 Identities=25% Similarity=0.746 Sum_probs=22.0
Q ss_pred CCCccchhhHHHHHcC-------------CCCCcccccccc
Q 031354 123 CRHCYHCECVDAWLSA-------------RSSCPLCRNSLR 150 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~-------------~~~CP~CR~~l~ 150 (161)
|.-+.|.+|+.+|+.. +-+||+||....
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5567889999999843 347999998764
No 116
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.19 E-value=0.11 Score=39.83 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=35.3
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
....+-.+|+||.+.+.. .+.+-+ =||+-+..|=.+ ....||.||-++-
T Consensus 43 ~~~~~lleCPvC~~~l~~--Pi~QC~-nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSP--PIFQCD-NGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred ccchhhccCchhhccCcc--cceecC-CCcEehhhhhhh---hcccCCccccccc
Confidence 345566799999999763 343333 479999888763 4567999998875
No 117
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=92.14 E-value=0.62 Score=24.03 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHH
Q 031354 27 TLFSIIVVFAVVL 39 (161)
Q Consensus 27 ~i~ii~~l~~~~l 39 (161)
++-++.+++.+++
T Consensus 5 ~IaIIv~V~vg~~ 17 (38)
T PF02439_consen 5 TIAIIVAVVVGMA 17 (38)
T ss_pred hhhHHHHHHHHHH
Confidence 3334444433333
No 118
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=91.80 E-value=0.12 Score=37.22 Aligned_cols=41 Identities=32% Similarity=0.719 Sum_probs=29.2
Q ss_pred CCCccccccc-----cccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccc
Q 031354 100 EESECCICLG-----VFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCR 146 (161)
Q Consensus 100 ~~~~CaICL~-----~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 146 (161)
.+..|.+|-+ .|+.+ .+..-+.|+-+||..|..+ ..||-|-
T Consensus 151 kGfiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 3568889975 34443 3444555999999999873 6699994
No 119
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=91.47 E-value=0.54 Score=31.11 Aligned_cols=16 Identities=25% Similarity=0.088 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 031354 27 TLFSIIVVFAVVLLVS 42 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~ 42 (161)
++.|++++.+.++.++
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 3334444444444333
No 120
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.94 E-value=0.14 Score=43.62 Aligned_cols=51 Identities=8% Similarity=0.174 Sum_probs=35.8
Q ss_pred CCCccccccccccC---CCeeeecCCCCCccchhhHHHHHcC------CCCCcccccccc
Q 031354 100 EESECCICLGVFED---GDKVKILPKCRHCYHCECVDAWLSA------RSSCPLCRNSLR 150 (161)
Q Consensus 100 ~~~~CaICL~~f~~---~~~v~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~ 150 (161)
....|.+|.-++-+ +-.+..+.+|+|-||..||..|... +..|++|...+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 34567777666665 3333333459999999999999853 345999988775
No 121
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=0.089 Score=44.70 Aligned_cols=48 Identities=27% Similarity=0.470 Sum_probs=34.6
Q ss_pred CCCCCCCccccccccccC-C---CeeeecCCCCCccchhhHHHHHcCCCCCccc
Q 031354 96 DDKEEESECCICLGVFED-G---DKVKILPKCRHCYHCECVDAWLSARSSCPLC 145 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~-~---~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 145 (161)
.....+..|.-|++..-. + +.+.++. |||+||+.|+..-..+++ |-.|
T Consensus 779 v~v~~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 779 VLVSVEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eeEeehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 334445689999886553 2 4677787 999999999988877655 5554
No 122
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.60 E-value=0.22 Score=33.19 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=37.5
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHc---CCCCCccccccccCCCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS---ARSSCPLCRNSLRVDSA 154 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~l~~~~~ 154 (161)
.-.+|.||-|.-.+..-+.--.-||-..+-.|-...++ -+..||+|+......+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence 45589999987555332221112898888888766554 46789999998876554
No 123
>PHA02692 hypothetical protein; Provisional
Probab=90.58 E-value=0.29 Score=28.78 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 031354 34 VFAVVLLVSFLFLYAR 49 (161)
Q Consensus 34 l~~~~l~~~~~~~~~~ 49 (161)
++.++++++++++|.+
T Consensus 53 ~~~~~~~vll~flYLK 68 (70)
T PHA02692 53 LIAAAIGVLLCFHYLK 68 (70)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555555555543
No 124
>PRK01844 hypothetical protein; Provisional
Probab=90.52 E-value=1.6 Score=25.89 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhhHH---hhcCCCCHHHHhc
Q 031354 28 LFSIIVVFAVVLLVSFLFLYARWFCRRFSHQNSNPDVPRAQQ---ALTRGLDLTTINT 82 (161)
Q Consensus 28 i~ii~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~ 82 (161)
+.++++++++++-+++-|+..|.+..+.-..+++.+....+. ...+..+++.+++
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir~Mm~QMGqkPSekki~Q 62 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQ 62 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHH
Confidence 334444445555555555665555555233343333332222 3445555555543
No 125
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=90.40 E-value=0.61 Score=30.84 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 031354 26 RTLFSIIVVFAVVLLVSFLFLYARWFCRRFSHQ 58 (161)
Q Consensus 26 ~~i~ii~~l~~~~l~~~~~~~~~~~~~~~~~~~ 58 (161)
..-.++.|++++++-++++++++.+..+|+++.
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677788888888888887777777664444
No 126
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=90.34 E-value=0.1 Score=43.26 Aligned_cols=44 Identities=23% Similarity=0.609 Sum_probs=28.7
Q ss_pred CCCCCccccccc-----cccCCCeeeecCCCCCccchhhHHHHHcCCCCCccc
Q 031354 98 KEEESECCICLG-----VFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLC 145 (161)
Q Consensus 98 ~~~~~~CaICL~-----~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 145 (161)
......|.+|-. .|+.....+-.. |+++||..|... .+..||.|
T Consensus 508 ~~~gfiCe~Cq~~~iiyPF~~~~~~rC~~-C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 508 TGKGFICELCQHNDIIYPFETRNTRRCST-CLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred ccCeeeeeeccCCCcccccccccceeHHH-HHHHHHHHHHhc---cCCCCCch
Confidence 345667888822 344334444555 999999999654 33449999
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.10 E-value=0.24 Score=42.01 Aligned_cols=42 Identities=26% Similarity=0.534 Sum_probs=31.1
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPL 144 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 144 (161)
...|++|-..+. |..+ .-+.|||.-|.+|+.+|+..+.-||.
T Consensus 779 ~~~CtVC~~vi~-G~~~-~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIR-GVDV-WCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceee-eeEe-ecccccccccHHHHHHHHhcCCCCcc
Confidence 347899955533 2333 23459999999999999999888876
No 128
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=0.27 Score=38.68 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=39.7
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCC---CCccccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARS---SCPLCRNSL 149 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~l 149 (161)
...-..|||=-++=.++..-..|. |||+...+=+.+--++.. .||.|=.+-
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 344568999888877777888898 999999999999766543 499994443
No 129
>PF15102 TMEM154: TMEM154 protein family
Probab=90.06 E-value=0.15 Score=34.62 Aligned_cols=7 Identities=29% Similarity=0.999 Sum_probs=4.2
Q ss_pred hHHHHHc
Q 031354 131 CVDAWLS 137 (161)
Q Consensus 131 Ci~~Wl~ 137 (161)
=+|+|+.
T Consensus 129 eldkwm~ 135 (146)
T PF15102_consen 129 ELDKWMN 135 (146)
T ss_pred HHHhHHH
Confidence 3666764
No 130
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=89.61 E-value=0.093 Score=44.13 Aligned_cols=48 Identities=25% Similarity=0.695 Sum_probs=37.1
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC---CCCccccccccC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR---SSCPLCRNSLRV 151 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~~ 151 (161)
...+|+||+.-+.+. ..+. |.|.|...|+..-|... ..||+|++.+..
T Consensus 20 k~lEc~ic~~~~~~p---~~~k-c~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLLK-CDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeecc---chhh-hhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 345899999998764 3455 99999999988877643 469999977653
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=89.53 E-value=0.54 Score=36.03 Aligned_cols=58 Identities=26% Similarity=0.561 Sum_probs=38.1
Q ss_pred CCCCCCCCccccccccccC---------------CC-eeeecCCCCCccchhhHHHHHcC---------CCCCccccccc
Q 031354 95 KDDKEEESECCICLGVFED---------------GD-KVKILPKCRHCYHCECVDAWLSA---------RSSCPLCRNSL 149 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~---------------~~-~v~~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~l 149 (161)
++......+|++|+..=.- |. .-...| |||+--++=..=|-+. +..||+|-..|
T Consensus 335 e~~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 335 ENTGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred cccCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 4444557899999975211 11 122356 9999777777788754 24599998887
Q ss_pred cCCC
Q 031354 150 RVDS 153 (161)
Q Consensus 150 ~~~~ 153 (161)
..+.
T Consensus 414 ~ge~ 417 (429)
T KOG3842|consen 414 AGEQ 417 (429)
T ss_pred ccCC
Confidence 6553
No 132
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.41 Score=36.18 Aligned_cols=49 Identities=33% Similarity=0.581 Sum_probs=34.2
Q ss_pred cccccccc-ccCCC-eeeecCCCCCccchhhHHHHHcCC-CCCccccccccCC
Q 031354 103 ECCICLGV-FEDGD-KVKILPKCRHCYHCECVDAWLSAR-SSCPLCRNSLRVD 152 (161)
Q Consensus 103 ~CaICL~~-f~~~~-~v~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~ 152 (161)
.|++|-.+ |-+.+ .+.+-| |||-.|..|++.-+... ..||-|-..+..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 47777653 33333 333446 99999999999998764 5799997766543
No 133
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.04 E-value=0.46 Score=35.24 Aligned_cols=55 Identities=13% Similarity=0.230 Sum_probs=41.1
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSAL 155 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 155 (161)
.....|+|=--+|........+-.|||+|-..=+.+- ...+|++|.+.+...+-+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeE
Confidence 4456899987777766666666669999998877773 357899999988766543
No 134
>PRK00523 hypothetical protein; Provisional
Probab=88.81 E-value=2.7 Score=24.99 Aligned_cols=53 Identities=6% Similarity=-0.006 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhhHH---hhcCCCCHHHHhc
Q 031354 30 SIIVVFAVVLLVSFLFLYARWFCRRFSHQNSNPDVPRAQQ---ALTRGLDLTTINT 82 (161)
Q Consensus 30 ii~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~ 82 (161)
++++++++++-++.-++..|.+..+.-..+++.+....+. ...+..+++.+++
T Consensus 8 I~l~i~~li~G~~~Gffiark~~~k~l~~NPpine~mir~M~~QMGqKPSekki~Q 63 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQ 63 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHhCCCccHHHHHH
Confidence 3333444444444555555555554233344433332222 3445555555543
No 135
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.40 E-value=4.3 Score=23.99 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhhHH---hhcCCCCHHHHh
Q 031354 30 SIIVVFAVVLLVSFLFLYARWFCRRFSHQNSNPDVPRAQQ---ALTRGLDLTTIN 81 (161)
Q Consensus 30 ii~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~ 81 (161)
+++++++.++.++.-++..|....+.-..+++.+....+. ...++.++..++
T Consensus 7 il~ivl~ll~G~~~G~fiark~~~k~lk~NPpine~~iR~M~~qmGqKpSe~kI~ 61 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIARKQMKKQLKDNPPINEEMIRMMMAQMGQKPSEKKIN 61 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchHHHHH
Confidence 3444444444444444444444444233343333332221 344555555544
No 137
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=87.34 E-value=0.32 Score=26.59 Aligned_cols=44 Identities=34% Similarity=0.657 Sum_probs=30.3
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHc------CCCCCccccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS------ARSSCPLCRN 147 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR~ 147 (161)
.|.||-....+++.|.=- .|+-.||..|+..=.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcC-CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 488998855555555444 4999999999765432 2456998863
No 138
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=86.89 E-value=0.45 Score=27.05 Aligned_cols=19 Identities=47% Similarity=0.976 Sum_probs=14.3
Q ss_pred CCCCccccccccCCCCCCC
Q 031354 139 RSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 139 ~~~CP~CR~~l~~~~~~~~ 157 (161)
+..||+|+..+...+..|+
T Consensus 2 k~~CPlCkt~~n~gsk~~p 20 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSKDPP 20 (61)
T ss_pred CccCCcccchhhcCCCCCC
Confidence 4679999999877666554
No 139
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=86.69 E-value=0.53 Score=35.22 Aligned_cols=49 Identities=27% Similarity=0.551 Sum_probs=35.0
Q ss_pred CCccccccccccCCCeeee---cCCCCCccchhhHHHHHcC---------CCCCccccccc
Q 031354 101 ESECCICLGVFEDGDKVKI---LPKCRHCYHCECVDAWLSA---------RSSCPLCRNSL 149 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~---lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~l 149 (161)
..+|-+|-.++.+.+..+. -|.|+-++|..|+..-+.. ...||.|+.-+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 4699999999954444433 2238889999999995432 23699998755
No 140
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=86.64 E-value=1.5 Score=23.12 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=17.3
Q ss_pred CCCcccCCCCCccccccchHHHHHHHHHHHHHH
Q 031354 9 FHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~ii~~l~~~~l~~ 41 (161)
..++|.+.+.++...+...++++.+.+++++++
T Consensus 4 gl~r~y~ed~~giki~P~~Vl~~si~fi~~V~~ 36 (41)
T PF03911_consen 4 GLLRYYEEDAPGIKIDPKTVLIISIAFIAIVIL 36 (41)
T ss_dssp ---------S-SS-BSCCHHHHHHHHHHHHHHH
T ss_pred cceeeeeccCCcceeCCeehHHHHHHHHHHHHH
Confidence 456666668888999999998887777666654
No 141
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.28 E-value=0.49 Score=38.30 Aligned_cols=39 Identities=23% Similarity=0.640 Sum_probs=31.5
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR 139 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~ 139 (161)
.....+|-||.+.+.. .+..+. |||.|+..|....+..+
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhhe
Confidence 4566799999999876 455566 99999999999998653
No 142
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=85.22 E-value=1.6 Score=33.51 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 30 SIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 30 ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
+..++++++++++++++|.-+++||
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444433
No 143
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.01 E-value=1.5 Score=28.55 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=33.1
Q ss_pred CCccccccccccCC----------CeeeecCCCCCccchhhHHHHHcCCCCCcccc
Q 031354 101 ESECCICLGVFEDG----------DKVKILPKCRHCYHCECVDAWLSARSSCPLCR 146 (161)
Q Consensus 101 ~~~CaICL~~f~~~----------~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 146 (161)
...|--|+..|.+. .....-+.|++.|+.+|=.=+-+.-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35699999988753 12234556999999999666655556799985
No 144
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=84.74 E-value=1.2 Score=24.46 Aligned_cols=42 Identities=19% Similarity=0.507 Sum_probs=18.7
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcC-----CCCCcccccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-----RSSCPLCRNS 148 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~ 148 (161)
.|+|-...+. -.+|... |.|.-+ -=++.|+.. ...||+|+++
T Consensus 4 ~CPls~~~i~--~P~Rg~~-C~H~~C-FDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIR--IPVRGKN-CKHLQC-FDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-S--SEEEETT---SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEE--eCccCCc-Ccccce-ECHHHHHHHhhccCCeECcCCcCc
Confidence 5777666543 4677776 988721 114556643 2469999864
No 145
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=84.15 E-value=0.68 Score=27.06 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=20.2
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHH
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWL 136 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl 136 (161)
.+...|.+|-..|.--..-..-..||++|+.+|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 45678999999996544333444599999999987654
No 146
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=83.18 E-value=0.64 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=12.5
Q ss_pred ccccccccccCCCeeeecCCCCCcc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCY 127 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~F 127 (161)
.|+-|-.+.... .+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 366665554332 33345677776
No 147
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=83.03 E-value=0.62 Score=37.33 Aligned_cols=34 Identities=32% Similarity=0.680 Sum_probs=27.6
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS 137 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~ 137 (161)
++..|+||..-|++ -.+|| |+|..+..|-..-+.
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhhcc
Confidence 45689999988875 55789 999999999876553
No 148
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=82.51 E-value=0.81 Score=33.75 Aligned_cols=50 Identities=32% Similarity=0.578 Sum_probs=35.4
Q ss_pred CCCCccccccccccCC-C-eeeecCCCCCccchhhHHHHHcCC-CCCc--ccccc
Q 031354 99 EEESECCICLGVFEDG-D-KVKILPKCRHCYHCECVDAWLSAR-SSCP--LCRNS 148 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~-~-~v~~lp~C~H~FH~~Ci~~Wl~~~-~~CP--~CR~~ 148 (161)
..+..|+||-.+---. + .+.+-|-|-|..|..|++.-+... ..|| -|..-
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 3456899998764332 3 334445599999999999999875 4699 67543
No 149
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.18 E-value=2.7 Score=25.80 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=32.5
Q ss_pred CCCCCCCCcccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 4 QESQPFHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWFC 52 (161)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~~ 52 (161)
..+++..|.+..+|..++-++...++++.+.+++.++ .+.++-++..
T Consensus 39 ~~~t~~mlkfYTDda~GlKV~PvvVLvmSvgFIasV~--~LHi~gK~~~ 85 (88)
T KOG3457|consen 39 GGSTGGMLKFYTDDAPGLKVDPVVVLVMSVGFIASVF--ALHIWGKLTR 85 (88)
T ss_pred CCCCCceeEEeecCCCCceeCCeeehhhhHHHHHHHH--HHHHHHHHhh
Confidence 3577789998888888888888887777766555443 3555544443
No 150
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=81.84 E-value=0.44 Score=37.59 Aligned_cols=27 Identities=41% Similarity=0.935 Sum_probs=0.0
Q ss_pred eeeecCCCCCc--cchhhHHHHHcC------CCCCcccccc
Q 031354 116 KVKILPKCRHC--YHCECVDAWLSA------RSSCPLCRNS 148 (161)
Q Consensus 116 ~v~~lp~C~H~--FH~~Ci~~Wl~~------~~~CP~CR~~ 148 (161)
.-..|. |||+ +|. |-.. ..+||+||..
T Consensus 303 P~VYl~-CGHVhG~h~-----Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 303 PWVYLN-CGHVHGYHN-----WGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------
T ss_pred ceeecc-ccceeeecc-----cccccccccccccCCCcccc
Confidence 344566 9998 554 7542 3469999864
No 151
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=81.41 E-value=1.3 Score=24.60 Aligned_cols=42 Identities=29% Similarity=0.750 Sum_probs=20.6
Q ss_pred cccccccccCC------CeeeecCCCCCccchhhHHHHHc-CCCCCcccc
Q 031354 104 CCICLGVFEDG------DKVKILPKCRHCYHCECVDAWLS-ARSSCPLCR 146 (161)
Q Consensus 104 CaICL~~f~~~------~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR 146 (161)
|.-|+..|..+ .....-|.|++.|+.+|= ...- .-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcC-hhhhccccCCcCCC
Confidence 55677777664 245566779999998883 2222 224598874
No 152
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=81.39 E-value=3.1 Score=31.53 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 31 IIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 31 i~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
|.+++.+++.++++++|+++++||
T Consensus 263 iaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444445555554444
No 153
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=81.09 E-value=0.93 Score=22.54 Aligned_cols=19 Identities=37% Similarity=0.742 Sum_probs=12.8
Q ss_pred CCCccchhhHHHHHcCCCCCccccc
Q 031354 123 CRHCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
|||++-..- ....||+|..
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCEECCCc------CCCcCcCCCC
Confidence 888765432 3457999965
No 154
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=80.67 E-value=1.1 Score=22.95 Aligned_cols=25 Identities=40% Similarity=0.809 Sum_probs=14.1
Q ss_pred ccccccccccCCC--------eeeecCCCCCccc
Q 031354 103 ECCICLGVFEDGD--------KVKILPKCRHCYH 128 (161)
Q Consensus 103 ~CaICL~~f~~~~--------~v~~lp~C~H~FH 128 (161)
.|+=|-..|+-.+ .++ -+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vr-C~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVR-CPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEE-CCCCCcEee
Confidence 4666666665433 333 334788875
No 155
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=80.37 E-value=6.4 Score=22.89 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=6.8
Q ss_pred hhcCCCCHHHHhc
Q 031354 70 ALTRGLDLTTINT 82 (161)
Q Consensus 70 ~~~~~~~~~~i~~ 82 (161)
...+..+++.++.
T Consensus 43 QMG~kpSekqi~Q 55 (64)
T PF03672_consen 43 QMGRKPSEKQIKQ 55 (64)
T ss_pred HhCCCccHHHHHH
Confidence 4455555555543
No 156
>PTZ00370 STEVOR; Provisional
Probab=79.71 E-value=3.4 Score=31.40 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 31 IIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 31 i~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
|.+++..++.++++++|+++++||
T Consensus 259 iaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444455444444
No 157
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=79.69 E-value=2.3 Score=32.82 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=37.1
Q ss_pred CCccccccccccCCC-eeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 101 ESECCICLGVFEDGD-KVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 101 ~~~CaICL~~f~~~~-~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
...|+||-+.....+ ...-.| |+|.-|..|...=...+.+||.||.+...+.
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCccccCc
Confidence 479999998764333 232334 7787777787777777889999998776543
No 158
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=79.52 E-value=1.8 Score=33.36 Aligned_cols=50 Identities=16% Similarity=0.468 Sum_probs=34.3
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
.......|-.|.++...+...+--. |.|+||.+|=.=-=..-..||-|..
T Consensus 326 ~~~~~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 326 EYNGSRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred ccCCCcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCC
Confidence 3445566999988888777666555 9999999994321122245999963
No 159
>PF15050 SCIMP: SCIMP protein
Probab=79.00 E-value=5.6 Score=26.13 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 031354 27 TLFSIIVVFAVVLLVSFLFLY--ARWFCRR 54 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~--~~~~~~~ 54 (161)
+++|+++.++++-+.+.+++| .|+..|+
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444333333333334444 3444444
No 160
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=78.69 E-value=3.7 Score=25.08 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 29 FSIIVVFAVVLLVSFLFLYARWFCR 53 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~~~~~~~ 53 (161)
+.++++++++++.++++..+.+.++
T Consensus 7 ~~iialiv~~iiaIvvW~iv~ieYr 31 (81)
T PF00558_consen 7 LAIIALIVALIIAIVVWTIVYIEYR 31 (81)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 161
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=78.30 E-value=3.5 Score=23.21 Aligned_cols=46 Identities=22% Similarity=0.573 Sum_probs=32.3
Q ss_pred CccccccccccCCC-eeeecCCCCC--ccchhhHHHHHcCCCCCccccccccCC
Q 031354 102 SECCICLGVFEDGD-KVKILPKCRH--CYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 102 ~~CaICL~~f~~~~-~v~~lp~C~H--~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
..|--|=.++..+. +-++ |.+ .|+.+|.+.-| +..||.|--.+...
T Consensus 6 pnCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 45666767776655 2222 664 59999999977 57899998777653
No 162
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.17 E-value=1.2 Score=35.44 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=32.8
Q ss_pred CCccccccccccCCC--eeeecCCCCCccchhhHHHHHcCCCCCccc
Q 031354 101 ESECCICLGVFEDGD--KVKILPKCRHCYHCECVDAWLSARSSCPLC 145 (161)
Q Consensus 101 ~~~CaICL~~f~~~~--~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 145 (161)
--.|+.|.-.++..+ ...+-. |||-|+..|...|...+..|.-|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 347888877766544 333555 89999999999998887777555
No 163
>PF14979 TMEM52: Transmembrane 52
Probab=78.14 E-value=8.6 Score=26.20 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=17.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 031354 24 RGRTLFSIIVVFAVVLLVSFLFLYA-RWFCRR 54 (161)
Q Consensus 24 ~~~~i~ii~~l~~~~l~~~~~~~~~-~~~~~~ 54 (161)
...|.+.++++++++++++.+.... |+.|.+
T Consensus 17 ~~LWyIwLill~~~llLLCG~ta~C~rfCClr 48 (154)
T PF14979_consen 17 SSLWYIWLILLIGFLLLLCGLTASCVRFCCLR 48 (154)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446666666666666666555544 434444
No 164
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=77.51 E-value=1.3 Score=22.62 Aligned_cols=25 Identities=36% Similarity=0.729 Sum_probs=14.4
Q ss_pred ccccccccccCCC--------eeeecCCCCCccc
Q 031354 103 ECCICLGVFEDGD--------KVKILPKCRHCYH 128 (161)
Q Consensus 103 ~CaICL~~f~~~~--------~v~~lp~C~H~FH 128 (161)
+|+=|...|+-.+ .++-. .|||+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~-~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCS-KCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECC-CCCCEeC
Confidence 4666666666433 34333 3888875
No 165
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=76.17 E-value=4.1 Score=29.04 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=13.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Q 031354 22 QIRGRTLFSIIVVFAVVLLVSFLFLYA 48 (161)
Q Consensus 22 ~~~~~~i~ii~~l~~~~l~~~~~~~~~ 48 (161)
.+++..++++++..+.+++++++|.-.
T Consensus 7 ~lsGv~vvlv~a~g~l~~vllfIfaKR 33 (186)
T PF07406_consen 7 WLSGVNVVLVIAYGSLVFVLLFIFAKR 33 (186)
T ss_pred cccceeeehhhHHHHHHHHHHHHHHHH
Confidence 355566666665555554444444443
No 166
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=76.06 E-value=1.5 Score=33.76 Aligned_cols=43 Identities=28% Similarity=0.701 Sum_probs=26.9
Q ss_pred CCCcccccccccc-----------CCCeeeecCCCCCc--cchhhHHHHHcC------CCCCcccccc
Q 031354 100 EESECCICLGVFE-----------DGDKVKILPKCRHC--YHCECVDAWLSA------RSSCPLCRNS 148 (161)
Q Consensus 100 ~~~~CaICL~~f~-----------~~~~v~~lp~C~H~--FH~~Ci~~Wl~~------~~~CP~CR~~ 148 (161)
...+|++=|..+. ..+.-..|. |||+ +|. |=.+ ...||+||..
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~-CGHV~G~H~-----WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLN-CGHVHGYHN-----WGVRENTGQRERECPMCRVV 350 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEe-ccccccccc-----cccccccCcccCcCCeeeee
Confidence 3557777665443 233445677 9987 785 7433 2359999853
No 167
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=75.99 E-value=1.9 Score=31.29 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=5.1
Q ss_pred cchHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAV 37 (161)
Q Consensus 25 ~~~i~ii~~l~~~ 37 (161)
.+..+++.++.++
T Consensus 35 d~~~I~iaiVAG~ 47 (221)
T PF08374_consen 35 DYVKIMIAIVAGI 47 (221)
T ss_pred cceeeeeeeecch
Confidence 3433443333333
No 168
>PHA02849 putative transmembrane protein; Provisional
Probab=75.12 E-value=11 Score=22.73 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=14.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 16 LDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWF 51 (161)
Q Consensus 16 ~~~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~ 51 (161)
.++..+++..-+++.++++.++ +++.+++++.+|.
T Consensus 7 ~~d~~f~~g~v~vi~v~v~vI~-i~~flLlyLvkws 41 (82)
T PHA02849 7 LNDIEFDAGAVTVILVFVLVIS-FLAFMLLYLIKWS 41 (82)
T ss_pred ccccccccchHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3444555444333333333333 3333344444444
No 169
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=75.08 E-value=0.97 Score=25.19 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=6.3
Q ss_pred CCCccccccccC
Q 031354 140 SSCPLCRNSLRV 151 (161)
Q Consensus 140 ~~CP~CR~~l~~ 151 (161)
..||+|.+++..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 379999998864
No 170
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=74.49 E-value=0.26 Score=29.19 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=19.9
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
..|+.|-.++.... +|.++..|-.. +.....||-|..+|.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 46888877654322 56666666654 344567888888764
No 171
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=74.07 E-value=6.8 Score=25.29 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 031354 33 VVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 33 ~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
+++++++++.+.+-+..|+..+
T Consensus 5 ~il~llLll~l~asl~~wr~~~ 26 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQ 26 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444
No 172
>PRK05978 hypothetical protein; Provisional
Probab=73.91 E-value=2.2 Score=29.27 Aligned_cols=27 Identities=22% Similarity=0.666 Sum_probs=21.6
Q ss_pred CCCC--CccchhhHHHHHcCCCCCccccccccCC
Q 031354 121 PKCR--HCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 121 p~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
|.|| |+|+ .+++.+..||.|-.++...
T Consensus 37 P~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 37 PACGEGKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred CCCCCCcccc-----cccccCCCccccCCccccC
Confidence 4465 8897 5889999999998887654
No 173
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=73.78 E-value=3 Score=23.13 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=25.1
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHc
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS 137 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~ 137 (161)
..|.+|-..|.....-..-..||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 468888777765433333334999999999887654
No 174
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=73.51 E-value=2.5 Score=30.63 Aligned_cols=42 Identities=26% Similarity=0.729 Sum_probs=31.5
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLC 145 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 145 (161)
-..|.+|-.-.-. .+|--. ||-.+|..|+.+.+++...||-|
T Consensus 181 lk~Cn~Ch~LvIq--g~rCg~-c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQ--GIRCGS-CNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHhHhHHHhhe--eeccCc-ccchhhhHHHHHHhcccCcCCch
Confidence 4589999765332 232223 77789999999999999999999
No 175
>PF15345 TMEM51: Transmembrane protein 51
Probab=73.42 E-value=8.3 Score=28.38 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=21.4
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 031354 21 FQIRGRTLFSIIVVFAVVLLVSFLFLYARWFCRRFSH 57 (161)
Q Consensus 21 ~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~~~~ 57 (161)
.......+.++++..+++++++.+++-+|-+++++..
T Consensus 53 ~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 53 LKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred ccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334445555555556777776666666666655333
No 176
>PRK11827 hypothetical protein; Provisional
Probab=73.33 E-value=1 Score=25.86 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=9.3
Q ss_pred HHHcCCCCCccccccccC
Q 031354 134 AWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 134 ~Wl~~~~~CP~CR~~l~~ 151 (161)
+||..--.||.|+.++..
T Consensus 3 ~~LLeILaCP~ckg~L~~ 20 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWY 20 (60)
T ss_pred hHHHhheECCCCCCcCeE
Confidence 444444456666555543
No 177
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=73.21 E-value=1.8 Score=24.74 Aligned_cols=15 Identities=27% Similarity=0.884 Sum_probs=11.4
Q ss_pred CCCCccccccccCCC
Q 031354 139 RSSCPLCRNSLRVDS 153 (161)
Q Consensus 139 ~~~CP~CR~~l~~~~ 153 (161)
.+.||+|.++.....
T Consensus 39 ~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGT 53 (59)
T ss_pred CccCCCcCCccccce
Confidence 367999999887653
No 178
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=73.12 E-value=7.1 Score=30.03 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 26 RTLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 26 ~~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
....+++++++|+++++++.++++++.++
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555556666555566665555443
No 180
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=72.47 E-value=0.62 Score=35.47 Aligned_cols=36 Identities=25% Similarity=0.588 Sum_probs=30.6
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcCC
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR 139 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~ 139 (161)
+|.+|+++|+.+.....+. |.=+||..|+-.|+...
T Consensus 216 vC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTG 251 (288)
T ss_pred ecHHHHHHHhcccccchhh-ccccccccccccccccc
Confidence 9999999999877666666 66699999999999764
No 181
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=71.60 E-value=5.1 Score=31.44 Aligned_cols=26 Identities=12% Similarity=0.330 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 29 FSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
++..++.+++++++++++|.-+++||
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILRYRR 337 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILRYRR 337 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444445554444444
No 182
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=71.44 E-value=2.5 Score=35.21 Aligned_cols=35 Identities=29% Similarity=0.566 Sum_probs=26.7
Q ss_pred CCCCccccccccccC-----------CCeeeecCCCCCccchhhHHHH
Q 031354 99 EEESECCICLGVFED-----------GDKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 99 ~~~~~CaICL~~f~~-----------~~~v~~lp~C~H~FH~~Ci~~W 135 (161)
.....|+||-|.|+. .+.|.+. =|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 567799999999986 4445443 4789999998764
No 183
>PTZ00046 rifin; Provisional
Probab=71.21 E-value=7.6 Score=30.57 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 29 FSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
++..++.+++++++.+++|.-+++||
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYRR 342 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYRR 342 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444455554444444
No 184
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=70.61 E-value=1.3 Score=25.07 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=15.5
Q ss_pred CeeeecCCCCCccchhhHHHH
Q 031354 115 DKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 115 ~~v~~lp~C~H~FH~~Ci~~W 135 (161)
.....-|.|||.|+..|..+|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 334445449999999998888
No 185
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=70.59 E-value=16 Score=20.14 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 031354 27 TLFSIIVVFAVVLLVSFLFLY 47 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~ 47 (161)
.+=+.-++++++++++.++++
T Consensus 13 tLrigGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 13 TLRIGGLIFAGVLFILGILII 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHH
Confidence 333433444444444433333
No 186
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=70.53 E-value=7 Score=29.72 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=12.2
Q ss_pred ccchHH-HHHHHHHHHHHHHHHHHHHHH
Q 031354 24 RGRTLF-SIIVVFAVVLLVSFLFLYARW 50 (161)
Q Consensus 24 ~~~~i~-ii~~l~~~~l~~~~~~~~~~~ 50 (161)
.+.-+. +++++++|+++++.++++.|+
T Consensus 259 ~Pcgiaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 259 LPYGIAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334334 344444444445455555444
No 187
>PHA03286 envelope glycoprotein E; Provisional
Probab=70.30 E-value=12 Score=30.44 Aligned_cols=41 Identities=10% Similarity=-0.088 Sum_probs=16.0
Q ss_pred CCCCcccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 031354 8 PFHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYA 48 (161)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~ 48 (161)
...|+-......+....-+.+++-.+.+++++++++..++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~ 411 (492)
T PHA03286 371 FTAAPTHTIAFKEGPTVIYSLLVSSMAAGAILVVLLFALCI 411 (492)
T ss_pred cccCCcchhhhccCCeEEHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444333333333333334444444444444444333333
No 188
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=69.99 E-value=17 Score=22.54 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 031354 41 VSFLFLYARW 50 (161)
Q Consensus 41 ~~~~~~~~~~ 50 (161)
++..+.+.+.
T Consensus 48 VilwfvCC~k 57 (94)
T PF05393_consen 48 VILWFVCCKK 57 (94)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 189
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=69.84 E-value=25 Score=24.57 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 031354 43 FLFLYARWF 51 (161)
Q Consensus 43 ~~~~~~~~~ 51 (161)
++++++|.+
T Consensus 109 i~yfvir~~ 117 (163)
T PF06679_consen 109 ILYFVIRTF 117 (163)
T ss_pred HHHHHHHHH
Confidence 333444433
No 190
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=69.67 E-value=28 Score=22.75 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 29 FSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
++|-.|.++.+..+..+.+.++.||+
T Consensus 88 ~VIGGLcaL~LaamGA~~LLrR~cRr 113 (126)
T PF03229_consen 88 LVIGGLCALTLAAMGAGALLRRCCRR 113 (126)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566666666665
No 191
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=69.49 E-value=4.2 Score=20.15 Aligned_cols=37 Identities=27% Similarity=0.601 Sum_probs=23.2
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 149 (161)
.|+.|-..+..++.... . =+..||.+|. .|..|+.+|
T Consensus 1 ~C~~C~~~i~~~~~~~~-~-~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLR-A-LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEE-e-CCccccccCC--------CCcccCCcC
Confidence 37788887776633322 2 4688998774 366666555
No 192
>PTZ00370 STEVOR; Provisional
Probab=69.43 E-value=7.5 Score=29.59 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031354 28 LFSIIVVFAVVLLVSFLFLYARW 50 (161)
Q Consensus 28 i~ii~~l~~~~l~~~~~~~~~~~ 50 (161)
..+++++++|+++++.+++|.|+
T Consensus 260 aalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 260 AALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444455555555555543
No 193
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=68.86 E-value=19 Score=21.10 Aligned_cols=9 Identities=33% Similarity=0.397 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 031354 43 FLFLYARWF 51 (161)
Q Consensus 43 ~~~~~~~~~ 51 (161)
.+++|..+.
T Consensus 16 ~lIlY~iYn 24 (68)
T PF05961_consen 16 GLILYGIYN 24 (68)
T ss_pred HHHHHHHHh
Confidence 334444333
No 194
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=67.94 E-value=19 Score=25.08 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 27 TLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
-.+++++.+.+++++.+++-.+|.+++.
T Consensus 96 R~~~Vl~g~s~l~i~yfvir~~R~r~~~ 123 (163)
T PF06679_consen 96 RALYVLVGLSALAILYFVIRTFRLRRRN 123 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445556666666666677777777643
No 195
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=67.28 E-value=12 Score=23.97 Aligned_cols=10 Identities=20% Similarity=-0.031 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 031354 45 FLYARWFCRR 54 (161)
Q Consensus 45 ~~~~~~~~~~ 54 (161)
..+..+..+|
T Consensus 35 ~c~c~~~~~r 44 (102)
T PF11669_consen 35 SCCCACRHRR 44 (102)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 196
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=66.33 E-value=4.9 Score=31.02 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=34.6
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC---CCCcccc
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR---SSCPLCR 146 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR 146 (161)
..-..|++=-++=.+...-..+. |||+.-.+=++..-++. -.||.|-
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 34458998777666667777888 99999999888854442 2499993
No 197
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=65.27 E-value=3.1 Score=31.52 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=15.5
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 031354 17 DDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYAR 49 (161)
Q Consensus 17 ~~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~ 49 (161)
++++.+.....+-+|+++.++++++++.++.++
T Consensus 267 Snss~S~s~~l~piil~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 267 SNSSKSVSDSLLPIILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred cCccchhhhhhhHHHHHHHHHHHHHHhhheeeE
Confidence 344444445555555555555444444444333
No 198
>PLN02189 cellulose synthase
Probab=65.11 E-value=10 Score=34.02 Aligned_cols=53 Identities=21% Similarity=0.435 Sum_probs=34.6
Q ss_pred CCCCCcccccccccc---CCCeeeecCCCCCccchhhHHHHHc-CCCCCcccccccc
Q 031354 98 KEEESECCICLGVFE---DGDKVKILPKCRHCYHCECVDAWLS-ARSSCPLCRNSLR 150 (161)
Q Consensus 98 ~~~~~~CaICL~~f~---~~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 150 (161)
......|.||-|+.. +|+.-.-..-|+---|..|.+-=-+ .++.||-|+....
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345569999999875 3443322222555588999843222 3578999999887
No 199
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=64.94 E-value=3.6 Score=28.77 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=13.2
Q ss_pred eeecCCCCCccchhhHHHHHcCCCCCcccccc
Q 031354 117 VKILPKCRHCYHCECVDAWLSARSSCPLCRNS 148 (161)
Q Consensus 117 v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 148 (161)
+.+.|.|||.+= + ..-..||+|..+
T Consensus 134 ~~vC~vCGy~~~----g---e~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHE----G---EAPEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCccc----C---CCCCcCCCCCCh
Confidence 445555777721 1 222458888643
No 200
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=64.39 E-value=1.5 Score=23.09 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=14.4
Q ss_pred CCCccchhhHHHHHcCCCCCccccc
Q 031354 123 CRHCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
|||.|-..--..= .....||.|..
T Consensus 11 Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 11 CGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 8888875321111 22356999987
No 201
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=64.02 E-value=6.7 Score=21.99 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=26.4
Q ss_pred CCCCCcccCCCCCccccccchHHHHHHHHHHHHHHH
Q 031354 7 QPFHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLVS 42 (161)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~ii~~l~~~~l~~~ 42 (161)
..-.++|-+.|.+..-++...++++.++++++++++
T Consensus 13 sAGL~ryy~ed~~~iKi~P~~Vi~~~~~~~~~v~~L 48 (54)
T PRK01253 13 SAGLIRYFEEETEAIKIDPKTVIAIGLALGIFVLVL 48 (54)
T ss_pred cchhhhhhhcccCccccCCeeeeeeHHHHHHHHHHH
Confidence 345566777788888899988888777776666554
No 202
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=63.70 E-value=30 Score=22.96 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=16.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 25 GRTLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
+.|.+.+++|.++++++.++.+..-+...|
T Consensus 33 tpWNysiL~Ls~vvlvi~~~LLgrsi~ANR 62 (125)
T PF15048_consen 33 TPWNYSILALSFVVLVISFFLLGRSIQANR 62 (125)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 344455666666665555555555444444
No 203
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=63.63 E-value=2 Score=24.90 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031354 31 IIVVFAVVLLVSFLFLYARWFC 52 (161)
Q Consensus 31 i~~l~~~~l~~~~~~~~~~~~~ 52 (161)
|...+++++++++++++..++.
T Consensus 15 IaG~Vvgll~ailLIlf~iyR~ 36 (64)
T PF01034_consen 15 IAGGVVGLLFAILLILFLIYRM 36 (64)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443333
No 204
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=63.61 E-value=2.3 Score=32.47 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 031354 36 AVVLLVSFLF 45 (161)
Q Consensus 36 ~~~l~~~~~~ 45 (161)
++++++++++
T Consensus 156 ~~iLLIA~iI 165 (290)
T PF05454_consen 156 AAILLIAGII 165 (290)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 205
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=63.49 E-value=27 Score=20.72 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031354 31 IIVVFAVVLLVSFLFLYARWF 51 (161)
Q Consensus 31 i~~l~~~~l~~~~~~~~~~~~ 51 (161)
+.+++.+++++.+++.++.+.
T Consensus 12 m~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 12 MGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 206
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=62.79 E-value=9.6 Score=24.03 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHHH
Q 031354 27 TLFSIIVVFAVVL 39 (161)
Q Consensus 27 ~i~ii~~l~~~~l 39 (161)
.+++|.++++++|
T Consensus 5 ~~llL~l~LA~lL 17 (95)
T PF07172_consen 5 AFLLLGLLLAALL 17 (95)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 207
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=62.78 E-value=2.2 Score=32.39 Aligned_cols=43 Identities=21% Similarity=0.540 Sum_probs=33.6
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
...|+-|-+.+...+.||.- =.|+||.+|.. |=+|++.|...+
T Consensus 92 GTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~--------C~iC~R~L~TGd 134 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA--QDFVYHLHCFA--------CFICKRQLATGD 134 (383)
T ss_pred CCcchhhcCCCChHHHHHHh--hcceeehhhhh--------hHhhhcccccCC
Confidence 45799999999888888875 58999999975 667777666544
No 208
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=62.58 E-value=5.1 Score=22.28 Aligned_cols=24 Identities=33% Similarity=0.827 Sum_probs=13.8
Q ss_pred CCCCCccchhhHHHHHcCCCCCccc
Q 031354 121 PKCRHCYHCECVDAWLSARSSCPLC 145 (161)
Q Consensus 121 p~C~H~FH~~Ci~~Wl~~~~~CP~C 145 (161)
+.|||.|-..=-+. ......||.|
T Consensus 32 ~~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 32 PKCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCCeeEccHhhh-ccCCCCCCCC
Confidence 34778766532222 2455679988
No 209
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=62.03 E-value=5.9 Score=21.84 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=27.5
Q ss_pred cccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 104 CCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
|+-|-..+..++.+.. . -|..||.+|. +|=.|+.+|....
T Consensus 1 C~~C~~~I~~~~~~~~-~-~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-A-MGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEE-E-TTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEE-e-CCcEEEcccc--------ccCCCCCccCCCe
Confidence 6778788776665532 3 6789998774 5777877776553
No 210
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=62.00 E-value=15 Score=23.56 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=18.1
Q ss_pred CCccchhhHHHHHcC---------CCCCccccc
Q 031354 124 RHCYHCECVDAWLSA---------RSSCPLCRN 147 (161)
Q Consensus 124 ~H~FH~~Ci~~Wl~~---------~~~CP~CR~ 147 (161)
.=.|+..||..++.. +..||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 456999999888742 346999975
No 211
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=61.99 E-value=31 Score=22.93 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 27 TLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
+.+++++.+++++++.++.-++|.+++.
T Consensus 45 lYIL~vmgfFgff~~gImlsyvRSKK~E 72 (129)
T PF02060_consen 45 LYILVVMGFFGFFTVGIMLSYVRSKKRE 72 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333444444455555555566665554
No 212
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=60.96 E-value=10 Score=23.01 Aligned_cols=25 Identities=24% Similarity=0.656 Sum_probs=20.6
Q ss_pred cccCCCeeeecCCCCCccchhhHHHH
Q 031354 110 VFEDGDKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 110 ~f~~~~~v~~lp~C~H~FH~~Ci~~W 135 (161)
.+..++.+.+.|+|.|.| ..|..++
T Consensus 40 ~~~~G~~v~l~~GCDkt~-~tC~~kF 64 (80)
T PF09356_consen 40 GLAVGDTVTLYPGCDKTF-ATCRAKF 64 (80)
T ss_pred cCCCCCEEEEEeCCCCCH-HHHHHHh
Confidence 455689999999999987 7887774
No 213
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=60.95 E-value=5.2 Score=23.33 Aligned_cols=11 Identities=18% Similarity=0.905 Sum_probs=8.3
Q ss_pred cchhhHHHHHc
Q 031354 127 YHCECVDAWLS 137 (161)
Q Consensus 127 FH~~Ci~~Wl~ 137 (161)
||..|+.+|..
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=60.32 E-value=4.4 Score=34.58 Aligned_cols=37 Identities=24% Similarity=0.657 Sum_probs=28.5
Q ss_pred CCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 114 GDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 114 ~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
+-.+...|.|.-+||.+=.+--..++.-||.||..-.
T Consensus 1041 d~~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1041 DASITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred cchhhhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 4455566778888888777777777899999998765
No 215
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=60.11 E-value=4.6 Score=20.54 Aligned_cols=30 Identities=33% Similarity=0.606 Sum_probs=17.7
Q ss_pred ecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 119 ILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 119 ~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
+-|.||++||..=-- -+....|..|..+|.
T Consensus 3 ~C~~Cg~~Yh~~~~p--P~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNP--PKVEGVCDNCGGELV 32 (36)
T ss_dssp EETTTTEEEETTTB----SSTTBCTTTTEBEB
T ss_pred CcCCCCCccccccCC--CCCCCccCCCCCeeE
Confidence 345699999952111 122356988877665
No 216
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=59.94 E-value=3.6 Score=19.66 Aligned_cols=12 Identities=33% Similarity=1.016 Sum_probs=6.2
Q ss_pred CCccccccccCC
Q 031354 141 SCPLCRNSLRVD 152 (161)
Q Consensus 141 ~CP~CR~~l~~~ 152 (161)
.||.|.+.+...
T Consensus 1 ~CP~C~s~l~~~ 12 (28)
T PF03119_consen 1 TCPVCGSKLVRE 12 (28)
T ss_dssp B-TTT--BEEE-
T ss_pred CcCCCCCEeEcC
Confidence 499999888744
No 217
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.86 E-value=5.6 Score=27.40 Aligned_cols=48 Identities=25% Similarity=0.478 Sum_probs=31.9
Q ss_pred cccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCC
Q 031354 106 ICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 106 ICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 156 (161)
||+-.-...+..-.-|.=.+-||.+|-.+-... ||-|..+|...-..+
T Consensus 9 iC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~~---Cp~C~~~IrG~y~v~ 56 (158)
T PF10083_consen 9 ICLNGHVITDSYDKNPELREKFCSKCGAKTITS---CPNCSTPIRGDYHVE 56 (158)
T ss_pred HccCccccccccccCchHHHHHHHHhhHHHHHH---CcCCCCCCCCceecC
Confidence 666655544444444433467999998886554 999999997664443
No 218
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=59.36 E-value=8.9 Score=18.34 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=9.2
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhH
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECV 132 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci 132 (161)
.|.+|-+.... +....-+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 46777666554 233333348888999885
No 219
>PHA03030 hypothetical protein; Provisional
Probab=58.95 E-value=6.2 Score=25.11 Aligned_cols=19 Identities=26% Similarity=0.618 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 031354 36 AVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~ 54 (161)
.++++++++++|++...|.
T Consensus 9 i~lfifl~iffYI~~IkRD 27 (122)
T PHA03030 9 IFLFIFLFIFFYIRIIKRD 27 (122)
T ss_pred HHHHHHHHHHHHheeeecc
Confidence 3444455566666665544
No 220
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=58.61 E-value=38 Score=20.36 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 031354 40 LVSFLFLYARWF 51 (161)
Q Consensus 40 ~~~~~~~~~~~~ 51 (161)
++..++++..+.
T Consensus 16 fVap~wl~lHY~ 27 (75)
T TIGR02976 16 FVAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 221
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.02 E-value=3.2 Score=33.67 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=27.3
Q ss_pred CccccccccccCCCe----eeecCCCCCccchhhHHHHHcC
Q 031354 102 SECCICLGVFEDGDK----VKILPKCRHCYHCECVDAWLSA 138 (161)
Q Consensus 102 ~~CaICL~~f~~~~~----v~~lp~C~H~FH~~Ci~~Wl~~ 138 (161)
..|+.|.-..+.+.. ....++|+|.||+.|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 359999998887662 2222249999999999998764
No 222
>PF15353 HECA: Headcase protein family homologue
Probab=57.76 E-value=6.9 Score=25.13 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=12.6
Q ss_pred CCCccchhhHHHHH
Q 031354 123 CRHCYHCECVDAWL 136 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl 136 (161)
.|+..|.+|.++|-
T Consensus 40 ~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 40 FGQYMHRECFEKWE 53 (107)
T ss_pred CCCchHHHHHHHHH
Confidence 57899999999995
No 223
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=57.68 E-value=10 Score=23.89 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=18.1
Q ss_pred CCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 123 CRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
||+.=|.-=+.++.. -.+||.|+++.++.
T Consensus 65 CGvC~~~LT~~EY~~-~~~Cp~C~spFNp~ 93 (105)
T COG4357 65 CGVCRKLLTRAEYGM-CGSCPYCQSPFNPG 93 (105)
T ss_pred hhhhhhhhhHHHHhh-cCCCCCcCCCCCcc
Confidence 666555444444432 24599999998765
No 224
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=57.41 E-value=25 Score=17.88 Aligned_cols=26 Identities=8% Similarity=0.257 Sum_probs=12.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH
Q 031354 16 LDDHNFQIRGRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 16 ~~~~~~~~~~~~i~ii~~l~~~~l~~ 41 (161)
......+.+.+.+++.+++++++.++
T Consensus 5 pn~q~VELNRTSLY~GLllifvl~vL 30 (37)
T PF02419_consen 5 PNKQPVELNRTSLYWGLLLIFVLAVL 30 (37)
T ss_dssp TT---BE--CCHHHHHHHHHHHHHHH
T ss_pred CCCCccchhHHhHHHHHHHHHHHHHH
Confidence 34455566667777666665555444
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=56.97 E-value=8.6 Score=33.26 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=30.1
Q ss_pred CCCCccccccccccC---------CCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 99 EEESECCICLGVFED---------GDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 99 ~~~~~CaICL~~f~~---------~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
..+..|+=|-..|-. +...-..|.|.|.-|..=|.+ ...||+|...+.
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 334566666665542 234456677999888654433 578999987653
No 226
>CHL00038 psbL photosystem II protein L
Probab=56.94 E-value=26 Score=17.88 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=14.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH
Q 031354 16 LDDHNFQIRGRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 16 ~~~~~~~~~~~~i~ii~~l~~~~l~~ 41 (161)
.+....+++.+.+++-+++++++.++
T Consensus 6 PN~q~VELNRTSLy~GLLlifvl~vl 31 (38)
T CHL00038 6 PNKQNVELNRTSLYWGLLLIFVLAVL 31 (38)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHH
Confidence 34455566667777665555554443
No 227
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=56.85 E-value=14 Score=21.31 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCCccccccccccC--CCeeeecCCCCCccchhhHHHH
Q 031354 100 EESECCICLGVFED--GDKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 100 ~~~~CaICL~~f~~--~~~v~~lp~C~H~FH~~Ci~~W 135 (161)
....|+.|-...+. .......|.||+.+|.+-...+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA~ 64 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAAR 64 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHHH
Confidence 45679999887776 5556666779988888755443
No 228
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=55.98 E-value=13 Score=25.29 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=11.7
Q ss_pred CCCccccccccCCCC
Q 031354 140 SSCPLCRNSLRVDSA 154 (161)
Q Consensus 140 ~~CP~CR~~l~~~~~ 154 (161)
-.||.|...|...+.
T Consensus 124 f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 124 FTCPRCGEELEEDDN 138 (147)
T ss_pred EECCCCCCEEEEcCc
Confidence 569999999876554
No 229
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=55.88 E-value=33 Score=20.38 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 27 TLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
..+.+++..+|+++++++++.+....+-
T Consensus 5 l~i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 5 LQIMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777776665
No 230
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=54.94 E-value=27 Score=23.81 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=7.0
Q ss_pred cchHHHHHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~ 41 (161)
..+.+++++++++++++
T Consensus 116 ~~~~~i~~~i~g~ll~i 132 (145)
T PF10661_consen 116 PISPTILLSIGGILLAI 132 (145)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 33444444444443333
No 231
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=54.67 E-value=1.4 Score=33.52 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=20.8
Q ss_pred CCCCCccccccccccCCCeeeecC--CCCCccchhhHHHHHcCCCCCccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILP--KCRHCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp--~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
......|+||=..-.-+ .++.-. +=.|.+|.-|-.+|--.+..||.|-.
T Consensus 169 ~w~~g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -TT-SS-TTT---EEEE-EEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CccCCcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 44567999996643221 111111 12355777888889878889999943
No 232
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=54.62 E-value=27 Score=24.05 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=17.4
Q ss_pred HHhcCCcEeeecCCCCCCCCCCCCcccccccccc
Q 031354 79 TINTLPIVLHRSEKSTKDDKEEESECCICLGVFE 112 (161)
Q Consensus 79 ~i~~lp~~~~~~~~~~~~~~~~~~~CaICL~~f~ 112 (161)
.+.+...++|++.. .-.++-.-+++|-+-+
T Consensus 79 ~~~kvgvvRYnAF~----dmGg~LSFslAlLD~~ 108 (151)
T PF14584_consen 79 CVQKVGVVRYNAFE----DMGGDLSFSLALLDDN 108 (151)
T ss_pred ccceEEEEEccCcc----cccccceeeeEEEeCC
Confidence 34456677777665 2345556666666543
No 233
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=54.26 E-value=9.6 Score=32.31 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=15.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 24 RGRTLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 24 ~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
+.+.|+|+.+++-+++++++++++....|++
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555555444444444444544
No 234
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=53.59 E-value=5.4 Score=30.78 Aligned_cols=54 Identities=6% Similarity=0.056 Sum_probs=36.4
Q ss_pred CCccccccccccCCCeeeecCCCCC-ccchhhHHHH-HcCCCCCccccccccCCCCCCCC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRH-CYHCECVDAW-LSARSSCPLCRNSLRVDSALPSI 158 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H-~FH~~Ci~~W-l~~~~~CP~CR~~l~~~~~~~~~ 158 (161)
.-.|.+|.+. .-.+...+ |+| +|+..|.-+= +++...||+|-.-.....++++.
T Consensus 136 ti~~iqq~tn---t~I~T~v~-~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i~d~ 191 (394)
T KOG2113|consen 136 TIKRIQQFTN---TYIATPVR-CGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQIHDT 191 (394)
T ss_pred ccchheeccc---ceEeeecc-CCCceEEEecCCcchhhhccccchhhhhhhhhhccccC
Confidence 4467776554 44555566 998 6999996665 44556799997776666555543
No 235
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=53.48 E-value=4.4 Score=30.61 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=0.0
Q ss_pred CCccccccc
Q 031354 18 DHNFQIRGR 26 (161)
Q Consensus 18 ~~~~~~~~~ 26 (161)
.++....+.
T Consensus 218 ss~pq~p~~ 226 (285)
T PF05337_consen 218 SSDPQLPGF 226 (285)
T ss_dssp ---------
T ss_pred CCCCCCCcc
Confidence 333344433
No 236
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.39 E-value=3.7 Score=27.54 Aligned_cols=52 Identities=23% Similarity=0.496 Sum_probs=31.1
Q ss_pred CCCCCCCccccccc-cccCCCeeeecCCCCCccchhhHHHHHcC-CC---CCcccccc
Q 031354 96 DDKEEESECCICLG-VFEDGDKVKILPKCRHCYHCECVDAWLSA-RS---SCPLCRNS 148 (161)
Q Consensus 96 ~~~~~~~~CaICL~-~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~---~CP~CR~~ 148 (161)
.+..++..|-||+. .|.+|-.-.-.. |.-.||+.|-..--.+ ++ .|-+||..
T Consensus 60 aGv~ddatC~IC~KTKFADG~GH~C~Y-Cq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADGCGHNCSY-CQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cccCcCcchhhhhhcccccccCcccch-hhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 45567889999986 455543333333 4455667776554332 32 48888654
No 237
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=53.31 E-value=13 Score=23.74 Aligned_cols=33 Identities=27% Similarity=0.606 Sum_probs=22.3
Q ss_pred CCCccccccccccCCCeee-ecCCCCCccchhhHHH
Q 031354 100 EESECCICLGVFEDGDKVK-ILPKCRHCYHCECVDA 134 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~-~lp~C~H~FH~~Ci~~ 134 (161)
....|.||-.. .|..+. .-++|...||..|...
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 45789999887 333332 1223778999999765
No 238
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=53.03 E-value=9.8 Score=28.47 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCC--CCccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARS--SCPLC 145 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~C 145 (161)
...|+|=+..+++ .++--. |||+|=.+=|...+.... .||+=
T Consensus 176 s~rdPis~~~I~n--PviSkk-C~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVN--PVISKK-CGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhc--hhhhcC-cCcchhhhhHHHHhccCceeecccc
Confidence 4578887666553 344444 999999999999988743 48874
No 239
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=52.31 E-value=30 Score=21.84 Aligned_cols=23 Identities=9% Similarity=0.288 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031354 32 IVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 32 ~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
++.++++++++++++-.+++..+
T Consensus 19 FA~L~i~~FiILLIi~~~IW~~~ 41 (121)
T PF10669_consen 19 FAFLFIVVFIILLIITKSIWHDS 41 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Confidence 33344444444555555554443
No 240
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=51.98 E-value=52 Score=28.88 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=13.8
Q ss_pred ccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 22 QIRGRTLFS-IIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 22 ~~~~~~i~i-i~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
.+..+..++ +.||...+++++++..+..++|||
T Consensus 266 Di~~YHT~fLl~ILG~~~livl~lL~vLl~yCrr 299 (807)
T PF10577_consen 266 DITTYHTVFLLAILGGTALIVLILLCVLLCYCRR 299 (807)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445554444 444443333333333333444444
No 241
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=51.70 E-value=18 Score=28.47 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=16.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 25 GRTLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
+...-++.++++|+++++++.++++++.+.
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 445555556666666555566665555443
No 242
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=51.61 E-value=33 Score=17.55 Aligned_cols=26 Identities=8% Similarity=0.232 Sum_probs=14.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH
Q 031354 16 LDDHNFQIRGRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 16 ~~~~~~~~~~~~i~ii~~l~~~~l~~ 41 (161)
.+....+++.+.+++-+++++++.++
T Consensus 7 pN~q~VELNRTSLy~GlLlifvl~vL 32 (39)
T PRK00753 7 PNKQPVELNRTSLYLGLLLVFVLGIL 32 (39)
T ss_pred CCCCCceechhhHHHHHHHHHHHHHH
Confidence 34455566667766665555554433
No 243
>PF15069 FAM163: FAM163 family
Probab=51.56 E-value=11 Score=25.51 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=5.4
Q ss_pred CCCCCccccc
Q 031354 98 KEEESECCIC 107 (161)
Q Consensus 98 ~~~~~~CaIC 107 (161)
......|+-|
T Consensus 88 ~~~~~~CptC 97 (143)
T PF15069_consen 88 GRARSYCPTC 97 (143)
T ss_pred CCCCCcCCCC
Confidence 3344566666
No 244
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=51.54 E-value=28 Score=21.08 Aligned_cols=61 Identities=16% Similarity=0.342 Sum_probs=20.9
Q ss_pred CCCCCccccccccccCCC--eeeec-CCCCCccchhhHHHHHc-CCCCCccccccccCCCCCCCC
Q 031354 98 KEEESECCICLGVFEDGD--KVKIL-PKCRHCYHCECVDAWLS-ARSSCPLCRNSLRVDSALPSI 158 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~--~v~~l-p~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~~~~~~ 158 (161)
..+...|-||=++....+ ++.+. -.|+--.+..|.+-=.+ .++.||-|+.....-...|.+
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V 70 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRV 70 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCC
Confidence 345678999988765322 22222 11444567788775444 467899999988766555544
No 245
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=51.11 E-value=25 Score=22.77 Aligned_cols=12 Identities=17% Similarity=0.601 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 031354 39 LLVSFLFLYARW 50 (161)
Q Consensus 39 l~~~~~~~~~~~ 50 (161)
++++++|+..|-
T Consensus 13 i~~i~yF~~iRP 24 (109)
T PRK05886 13 IMGGFMYFASRR 24 (109)
T ss_pred HHHHHHHHHccH
Confidence 333334444433
No 246
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.09 E-value=2.3 Score=32.39 Aligned_cols=49 Identities=29% Similarity=0.553 Sum_probs=36.6
Q ss_pred CCCccccccccccCC--Cee-eecCC-------CCCccchhhHHHHHcCC-CCCcccccc
Q 031354 100 EESECCICLGVFEDG--DKV-KILPK-------CRHCYHCECVDAWLSAR-SSCPLCRNS 148 (161)
Q Consensus 100 ~~~~CaICL~~f~~~--~~v-~~lp~-------C~H~FH~~Ci~~Wl~~~-~~CP~CR~~ 148 (161)
....|.||...|... ..+ +++.. |||..+..|++.-+... ..||.||..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 456899999999832 222 23333 99999999999987654 579999875
No 247
>PLN02436 cellulose synthase A
Probab=50.71 E-value=25 Score=31.82 Aligned_cols=53 Identities=21% Similarity=0.468 Sum_probs=33.9
Q ss_pred CCCCCcccccccccc---CCCeeeecCCCCCccchhhHHHHHc-CCCCCcccccccc
Q 031354 98 KEEESECCICLGVFE---DGDKVKILPKCRHCYHCECVDAWLS-ARSSCPLCRNSLR 150 (161)
Q Consensus 98 ~~~~~~CaICL~~f~---~~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 150 (161)
......|-||=|+.. +|+.-.-..-|+--.|..|.+-=-+ .++.||-|+....
T Consensus 33 ~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 33 ELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 344569999999853 4443322222555588999843222 3578999999887
No 248
>PTZ00046 rifin; Provisional
Probab=50.70 E-value=20 Score=28.29 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=15.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 25 GRTLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
+...-++.++++|+++++++.++++++.+.
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 344555555555555555555555544443
No 249
>PF13994 PgaD: PgaD-like protein
Probab=50.31 E-value=74 Score=21.33 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=6.8
Q ss_pred hhcCCCCHHHHhcC
Q 031354 70 ALTRGLDLTTINTL 83 (161)
Q Consensus 70 ~~~~~~~~~~i~~l 83 (161)
+..=+++.+.+.++
T Consensus 107 A~~f~l~~~~l~~l 120 (138)
T PF13994_consen 107 ARSFGLSPEQLQQL 120 (138)
T ss_pred HHHcCCCHHHHHHH
Confidence 33445555555543
No 250
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=50.30 E-value=41 Score=23.07 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 031354 39 LLVSFLFLYARWFCRR 54 (161)
Q Consensus 39 l~~~~~~~~~~~~~~~ 54 (161)
++++++|.++..+++|
T Consensus 132 ~iliii~CLiei~shr 147 (154)
T PF14914_consen 132 MILIIIFCLIEICSHR 147 (154)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3344444444455444
No 251
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=49.96 E-value=14 Score=30.10 Aligned_cols=56 Identities=21% Similarity=0.543 Sum_probs=33.9
Q ss_pred CCCCCcccccc-ccccCCCeeeecCCCCCccchhhHHHHHcC--------CCCCccccccccCCC
Q 031354 98 KEEESECCICL-GVFEDGDKVKILPKCRHCYHCECVDAWLSA--------RSSCPLCRNSLRVDS 153 (161)
Q Consensus 98 ~~~~~~CaICL-~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~l~~~~ 153 (161)
-..+..|.+|. ....++..+.....|+--||..|-...... ...|=+|+.-.....
T Consensus 165 ~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 165 HKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred ccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 33445699998 444455544444447778999997664322 124888866554333
No 252
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=49.59 E-value=7.4 Score=18.16 Aligned_cols=9 Identities=33% Similarity=1.172 Sum_probs=6.9
Q ss_pred CCccccccc
Q 031354 141 SCPLCRNSL 149 (161)
Q Consensus 141 ~CP~CR~~l 149 (161)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 589997766
No 253
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=49.41 E-value=19 Score=26.28 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=23.1
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 18 DHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWF 51 (161)
Q Consensus 18 ~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~ 51 (161)
..+......++-+|.++++|++++++..++++++
T Consensus 31 ~~~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 31 SRSKDYVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred cccccceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 3344567788888888888888776666654344
No 254
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=49.19 E-value=15 Score=27.71 Aligned_cols=44 Identities=25% Similarity=0.466 Sum_probs=26.3
Q ss_pred CCCccccccccccCCCeeeecCCCCC-ccchhhHHHHH-cCCCCCc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRH-CYHCECVDAWL-SARSSCP 143 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H-~FH~~Ci~~Wl-~~~~~CP 143 (161)
.-..|.||++---+|-.-.-|.+=.- .=|.+|.++|= ..++.||
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 34567777776544433322221111 36899999994 4578899
No 255
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=48.58 E-value=41 Score=24.86 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.5
Q ss_pred HHHHHH
Q 031354 48 ARWFCR 53 (161)
Q Consensus 48 ~~~~~~ 53 (161)
+.|...
T Consensus 213 ~C~k~d 218 (259)
T PF07010_consen 213 MCWKTD 218 (259)
T ss_pred HhhcCC
Confidence 344443
No 256
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=48.39 E-value=5.9 Score=31.52 Aligned_cols=52 Identities=21% Similarity=0.510 Sum_probs=0.0
Q ss_pred CCCcccccccccc-------------CC---CeeeecCCCCCccchhhHHHHHcC---------CCCCccccccccCC
Q 031354 100 EESECCICLGVFE-------------DG---DKVKILPKCRHCYHCECVDAWLSA---------RSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~-------------~~---~~v~~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~l~~~ 152 (161)
..-+|++|+..=. .+ -....-| |||+-=.+...-|-+. +..||+|-.+|...
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 3679999996411 11 1334567 9999888888889754 23599998888754
No 257
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=48.15 E-value=51 Score=18.71 Aligned_cols=8 Identities=25% Similarity=0.356 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 031354 46 LYARWFCR 53 (161)
Q Consensus 46 ~~~~~~~~ 53 (161)
.++|+...
T Consensus 25 l~IRri~~ 32 (58)
T PF13314_consen 25 LFIRRILI 32 (58)
T ss_pred HHHHHHHH
Confidence 33444443
No 258
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.75 E-value=10 Score=25.21 Aligned_cols=27 Identities=30% Similarity=0.756 Sum_probs=19.2
Q ss_pred ccchhhHHHHHcCCCCCccccccccCCCCC
Q 031354 126 CYHCECVDAWLSARSSCPLCRNSLRVDSAL 155 (161)
Q Consensus 126 ~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 155 (161)
.||.+|-..-..+ ||.|..+|..+..+
T Consensus 29 afcskcgeati~q---cp~csasirgd~~v 55 (160)
T COG4306 29 AFCSKCGEATITQ---CPICSASIRGDYYV 55 (160)
T ss_pred HHHhhhchHHHhc---CCccCCccccccee
Confidence 4888887765443 99999988765443
No 259
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=47.56 E-value=29 Score=19.56 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 26 RTLFSIIVVFAVVLLVSFLFLYARW 50 (161)
Q Consensus 26 ~~i~ii~~l~~~~l~~~~~~~~~~~ 50 (161)
-.-+++..++.+++++..+....++
T Consensus 30 p~~~Ii~gii~~~~fV~~Lv~lV~~ 54 (56)
T PF11174_consen 30 PVHFIIVGIILAALFVAGLVLLVNL 54 (56)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665544
No 260
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=47.06 E-value=26 Score=21.53 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=14.4
Q ss_pred CCCccccccchHHHHHHHHHHHHHH
Q 031354 17 DDHNFQIRGRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 17 ~~~~~~~~~~~i~ii~~l~~~~l~~ 41 (161)
+........+.++|.+.+..+++++
T Consensus 27 d~~~Lka~kysIVI~FWv~LA~FV~ 51 (90)
T PF15183_consen 27 DEEKLKANKYSIVIAFWVSLAAFVV 51 (90)
T ss_pred CHHHhcccceeeehhHHHHHHHHHH
Confidence 4445556667777766655444433
No 261
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.93 E-value=35 Score=19.81 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=9.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHH
Q 031354 22 QIRGRTLFSIIVVFAVVLLVSFL 44 (161)
Q Consensus 22 ~~~~~~i~ii~~l~~~~l~~~~~ 44 (161)
.++...|++|.+...++++++..
T Consensus 9 GlnPGlIVLlvV~g~ll~flvGn 31 (69)
T PF04689_consen 9 GLNPGLIVLLVVAGLLLVFLVGN 31 (69)
T ss_pred CCCCCeEEeehHHHHHHHHHHHH
Confidence 34444444444444444433333
No 262
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=46.72 E-value=8.3 Score=22.09 Aligned_cols=13 Identities=38% Similarity=1.037 Sum_probs=9.6
Q ss_pred CCCccccccccCC
Q 031354 140 SSCPLCRNSLRVD 152 (161)
Q Consensus 140 ~~CP~CR~~l~~~ 152 (161)
--||+||.++...
T Consensus 9 LaCP~~kg~L~~~ 21 (60)
T COG2835 9 LACPVCKGPLVYD 21 (60)
T ss_pred eeccCcCCcceEe
Confidence 3599999887543
No 263
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.72 E-value=13 Score=27.80 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=28.6
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS 137 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~ 137 (161)
....+.|..||..+.+ -.+.| =||+|..+||.+.+.
T Consensus 40 iK~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccC---CccCC-CCeeeeHHHHHHHHH
Confidence 3456789999999875 33566 799999999999874
No 264
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=46.45 E-value=17 Score=19.53 Aligned_cols=15 Identities=13% Similarity=0.529 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 031354 31 IIVVFAVVLLVSFLF 45 (161)
Q Consensus 31 i~~l~~~~l~~~~~~ 45 (161)
++++++++++++++-
T Consensus 6 ~~iilg~~ll~~Lig 20 (49)
T PF05624_consen 6 VLIILGALLLLLLIG 20 (49)
T ss_pred eHHHHHHHHHHHHHH
Confidence 334444444443333
No 265
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=46.38 E-value=34 Score=21.61 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=17.0
Q ss_pred CcccCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 031354 11 WHYTELDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLY 47 (161)
Q Consensus 11 ~~~~~~~~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~ 47 (161)
|.+-+=.+...+++..+++++.++.+.+..++.+.++
T Consensus 8 W~fl~CY~~~~d~~~~Wl~~i~~~~v~~~t~~~l~iY 44 (97)
T PF04834_consen 8 WNFLDCYDKKSDMPNYWLYAIGIVLVFCSTFFSLAIY 44 (97)
T ss_pred ccchhhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333445666666665544443333333333
No 266
>PLN02195 cellulose synthase A
Probab=46.07 E-value=31 Score=30.99 Aligned_cols=60 Identities=13% Similarity=0.337 Sum_probs=37.9
Q ss_pred CCCCCccccccccccC---CCeeeecCCCCCccchhhHHHHHcC--CCCCccccccccCCCCCCCC
Q 031354 98 KEEESECCICLGVFED---GDKVKILPKCRHCYHCECVDAWLSA--RSSCPLCRNSLRVDSALPSI 158 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~---~~~v~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~~~~~~~~ 158 (161)
+.+...|.||=|+... |+...-.--|+---|..|. +.=++ ++.||-|+.....++.+-++
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk~~~~~~d~ 67 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYDAENVFDDV 67 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCccccccccchh
Confidence 3456689999886653 3322211126666899998 43332 57799999999855544433
No 267
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=45.80 E-value=6.4 Score=21.83 Aligned_cols=10 Identities=40% Similarity=1.335 Sum_probs=4.1
Q ss_pred CCcccccccc
Q 031354 141 SCPLCRNSLR 150 (161)
Q Consensus 141 ~CP~CR~~l~ 150 (161)
+||+|...+.
T Consensus 26 tCP~C~a~~~ 35 (54)
T PF09237_consen 26 TCPICGAVIR 35 (54)
T ss_dssp E-TTT--EES
T ss_pred CCCcchhhcc
Confidence 4777765543
No 268
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=45.67 E-value=20 Score=22.90 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=27.4
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS 137 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~ 137 (161)
.|.||=.++..|+....++. =.-|..|+.+=..
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHHh
Confidence 69999999999999988873 5679999887554
No 269
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=45.66 E-value=55 Score=20.12 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 29 FSIIVVFAVVLLVSFLFLYARWFC 52 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~~~~~~ 52 (161)
+.+....++++++.++++.++.-.
T Consensus 13 L~vlGmg~VflfL~iLi~~~~~m~ 36 (84)
T COG3630 13 LMVLGMGFVFLFLSILIYAMRGMG 36 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566655655555433
No 270
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.62 E-value=26 Score=22.04 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=28.6
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA 138 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~ 138 (161)
.-.|.||=.....|+....++ =| ..|.+|+..=...
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kG-sVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KG-SVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CC-cchHHHHHHHHhc
Confidence 457999999999999998887 44 4599998875544
No 271
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=45.01 E-value=31 Score=21.88 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031354 32 IVVFAVVLLVSFLFLYARWFCR 53 (161)
Q Consensus 32 ~~l~~~~l~~~~~~~~~~~~~~ 53 (161)
.++..++++++++|+..|-.++
T Consensus 11 ~ll~~vl~~~ifyFli~RPQrK 32 (97)
T COG1862 11 LLLPLVLIFAIFYFLIIRPQRK 32 (97)
T ss_pred HHHHHHHHHHHHHHhhcCHHHH
Confidence 3333444444444444444333
No 272
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=44.92 E-value=27 Score=20.25 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 031354 28 LFSIIVVFAVVLLV 41 (161)
Q Consensus 28 i~ii~~l~~~~l~~ 41 (161)
++++.+++++++++
T Consensus 2 WIiiSIvLai~lLI 15 (66)
T PF07438_consen 2 WIIISIVLAIALLI 15 (66)
T ss_pred hhhHHHHHHHHHHH
Confidence 34444444444433
No 273
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=44.85 E-value=21 Score=27.41 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 28 LFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 28 i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
-.++-|+++++|..++++.++.+...|
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~R 296 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGR 296 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEe
Confidence 356667666665555555554444443
No 274
>PHA03164 hypothetical protein; Provisional
Probab=44.42 E-value=39 Score=20.30 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 031354 29 FSIIVVFAVVLLVS 42 (161)
Q Consensus 29 ~ii~~l~~~~l~~~ 42 (161)
+++..|+++.++++
T Consensus 61 lvLtgLaIamILfi 74 (88)
T PHA03164 61 LVLTGLAIAMILFI 74 (88)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 275
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=44.16 E-value=19 Score=23.49 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=28.5
Q ss_pred CCCCccccccccccC--CCeeeecCCCCCccchhhHHHHHcCCC--CCccccc
Q 031354 99 EEESECCICLGVFED--GDKVKILPKCRHCYHCECVDAWLSARS--SCPLCRN 147 (161)
Q Consensus 99 ~~~~~CaICL~~f~~--~~~v~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~ 147 (161)
.+...|++|...|.- +... ....|+|.++..|-.. ..+.. .|-+|..
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~~-~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRGR-VCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTCE-EETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred cCCcchhhhCCcccccCCCCC-cCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 366799999987643 2233 3344999999999665 11122 4888854
No 276
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=44.10 E-value=12 Score=23.44 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=29.8
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
....|.-|-..+.--|.+ | |-.|+..+..|..|++++...
T Consensus 32 ~rS~C~~C~~~L~~~~lI---P----------i~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 32 PRSHCPHCGHPLSWWDLI---P----------ILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred CCCcCcCCCCcCcccccc---h----------HHHHHHhCCCCcccCCCCChH
Confidence 346788887776654433 4 667999999999999998653
No 277
>COG4640 Predicted membrane protein [Function unknown]
Probab=44.09 E-value=10 Score=30.31 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=20.8
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 18 DHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARW 50 (161)
Q Consensus 18 ~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~ 50 (161)
..--+++...++.+.+++++++++++++++-+.
T Consensus 42 trrkniskK~ii~was~a~~lIlii~~~~fgk~ 74 (465)
T COG4640 42 TRRKNISKKKIIPWASGAFILILIIILFFFGKN 74 (465)
T ss_pred hhccCCccceeehhHHHHHHHHHHHHHHHHhhc
Confidence 334456777777777777777666666655443
No 278
>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.82 E-value=14 Score=34.97 Aligned_cols=38 Identities=26% Similarity=0.600 Sum_probs=28.6
Q ss_pred CCCCccchhhHHHHHcCC--------------------CCCccccccccCCCCCCCCC
Q 031354 122 KCRHCYHCECVDAWLSAR--------------------SSCPLCRNSLRVDSALPSIT 159 (161)
Q Consensus 122 ~C~H~FH~~Ci~~Wl~~~--------------------~~CP~CR~~l~~~~~~~~~~ 159 (161)
.|||.-|..|........ .-||+|++......+++..+
T Consensus 1150 ~c~h~mh~~c~~~~~~a~r~~~n~~~~~l~~~~se~~l~lCp~c~slsn~~lp~~~~~ 1207 (1738)
T KOG1140|consen 1150 SCGHHMHYGCFKRYVQAKRFRENARTAPLCQHYSENGLFLCPLCKSLSNVSLPMFLPP 1207 (1738)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhhhcCcccccccCCcccCCchHhhhhccCCcCCch
Confidence 399999999999887321 13999998887777765543
No 279
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=43.72 E-value=12 Score=25.26 Aligned_cols=21 Identities=33% Similarity=0.790 Sum_probs=15.9
Q ss_pred CCCCCccchhhHHHHHcCCCCCccccccc
Q 031354 121 PKCRHCYHCECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 121 p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 149 (161)
+.|||+|+. .+.-||.|.+..
T Consensus 33 ~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 33 KKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred CCCCeEEcC--------CcccCCCCCCCC
Confidence 349999874 456799998874
No 280
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=43.55 E-value=26 Score=18.88 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=24.7
Q ss_pred CCCCccccccccc--cCCCeeeecCCCCCccchhhHHH
Q 031354 99 EEESECCICLGVF--EDGDKVKILPKCRHCYHCECVDA 134 (161)
Q Consensus 99 ~~~~~CaICL~~f--~~~~~v~~lp~C~H~FH~~Ci~~ 134 (161)
.....|.+|-+.+ ...+.++-.- |+-..|.+|++.
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~-C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSW-CGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETT-TT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCCCCeEEECC-CCChHhhhhhhh
Confidence 4566899998887 4455666566 999999999865
No 281
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=43.10 E-value=7.1 Score=21.26 Aligned_cols=20 Identities=25% Similarity=0.758 Sum_probs=13.0
Q ss_pred CCCccchhhHHHHHc----CCCCCccccc
Q 031354 123 CRHCYHCECVDAWLS----ARSSCPLCRN 147 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~----~~~~CP~CR~ 147 (161)
|||.|-. |.. ....||.|.+
T Consensus 11 Cg~~fe~-----~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 11 CGHRFEV-----LQKMSDDPLATCPECGG 34 (52)
T ss_pred CCCEeEE-----EEecCCCCCCCCCCCCC
Confidence 8887764 322 2346999987
No 282
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=43.05 E-value=30 Score=31.42 Aligned_cols=51 Identities=18% Similarity=0.396 Sum_probs=32.4
Q ss_pred CCCCccccccccccCCC--eeeec-CCCCCccchhhHHHHHc--CCCCCcccccccc
Q 031354 99 EEESECCICLGVFEDGD--KVKIL-PKCRHCYHCECVDAWLS--ARSSCPLCRNSLR 150 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~--~v~~l-p~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~l~ 150 (161)
.+...|-||=|+..... ++.+- --|+-=-|..|.+ .=+ .++.||-|+....
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 34569999988865322 22222 1144448899983 333 3578999999887
No 283
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=43.02 E-value=28 Score=30.44 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031354 28 LFSIIVVFAVVLLVSFLFLYARWFCRRFS 56 (161)
Q Consensus 28 i~ii~~l~~~~l~~~~~~~~~~~~~~~~~ 56 (161)
.++-..+++++++++++.+|+|.+|.+.+
T Consensus 277 ~ILG~~~livl~lL~vLl~yCrrkc~~~r 305 (807)
T PF10577_consen 277 AILGGTALIVLILLCVLLCYCRRKCLKPR 305 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 33333555555666677777777776634
No 284
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=42.91 E-value=9.1 Score=35.69 Aligned_cols=52 Identities=23% Similarity=0.438 Sum_probs=40.7
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCccccccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNSL 149 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 149 (161)
.+.....|-+|....++.+.+.-.- |.-.||..|+..-+.. ...||-||..-
T Consensus 1104 ~s~~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1104 RSAVNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cccchhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3455679999999988766665555 7888999999998865 34699998765
No 285
>PF15179 Myc_target_1: Myc target protein 1
Probab=42.82 E-value=64 Score=23.01 Aligned_cols=17 Identities=18% Similarity=0.700 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 031354 38 VLLVSFLFLYARWFCRR 54 (161)
Q Consensus 38 ~l~~~~~~~~~~~~~~~ 54 (161)
+++-.+++++..|.-||
T Consensus 33 LviG~li~~LltwlSRR 49 (197)
T PF15179_consen 33 LVIGALIWALLTWLSRR 49 (197)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33333344444444443
No 286
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=42.74 E-value=1.4e+02 Score=22.21 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 24 RGRTLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 24 ~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
...++-+++++++.+|++-.++-|+|.++..
T Consensus 192 ~~~wla~~Lm~~G~fI~irsi~dY~rVKR~E 222 (233)
T PF10176_consen 192 SNPWLAYILMAFGWFIFIRSIIDYWRVKRME 222 (233)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677777777777777777666655
No 287
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=42.52 E-value=18 Score=27.11 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=18.4
Q ss_pred CccccccccccCCCeeeecCCCCCcc
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCY 127 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~F 127 (161)
..|++|-..+..++.-...+ .||.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 46999999997655544555 67988
No 288
>PLN02400 cellulose synthase
Probab=42.48 E-value=26 Score=31.79 Aligned_cols=52 Identities=19% Similarity=0.418 Sum_probs=32.6
Q ss_pred CCCCccccccccccCCC--eeeec-CCCCCccchhhHHHHHc--CCCCCccccccccC
Q 031354 99 EEESECCICLGVFEDGD--KVKIL-PKCRHCYHCECVDAWLS--ARSSCPLCRNSLRV 151 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~--~v~~l-p~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~l~~ 151 (161)
.+...|-||=|+....+ ++.+. -.|+-=-|..|.+ .=+ .++.||-|+.....
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCcccc
Confidence 35569999988865422 22222 1144447888983 322 25789999998873
No 289
>PRK01343 zinc-binding protein; Provisional
Probab=42.47 E-value=14 Score=20.97 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=9.1
Q ss_pred CCCCcccccccc
Q 031354 139 RSSCPLCRNSLR 150 (161)
Q Consensus 139 ~~~CP~CR~~l~ 150 (161)
...||+|+.+..
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 456999988764
No 290
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=42.45 E-value=78 Score=19.49 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 28 LFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 28 i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
.+.+++..+|+++++++++..+...+.
T Consensus 13 ~lm~~GM~~VF~fL~lLi~~~~l~~~~ 39 (85)
T PRK03814 13 TLMLTGMGVVFIFLTLLVYLVQLMSKL 39 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666665554
No 291
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=42.13 E-value=35 Score=20.73 Aligned_cols=9 Identities=56% Similarity=0.862 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 031354 41 VSFLFLYAR 49 (161)
Q Consensus 41 ~~~~~~~~~ 49 (161)
++++++..+
T Consensus 13 ~i~yf~~~r 21 (82)
T PF02699_consen 13 VIFYFLMIR 21 (82)
T ss_dssp HHHHHHTHH
T ss_pred HHHhhheec
Confidence 333333333
No 292
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=42.12 E-value=19 Score=21.94 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=22.0
Q ss_pred CCCccccccccccCCCeee-ecCCCCCccchhhHHH
Q 031354 100 EESECCICLGVFEDGDKVK-ILPKCRHCYHCECVDA 134 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~-~lp~C~H~FH~~Ci~~ 134 (161)
....|.+|-... |..+. ..++|.-.||..|-..
T Consensus 35 ~~~~C~~C~~~~--Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKG--GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCC--CeEEEEeCCCCCcEEChHHHcc
Confidence 345899998652 43332 2334889999999765
No 293
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=41.84 E-value=50 Score=24.32 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 26 RTLFSIIVVFAVVLLVSFLFLYARWFC 52 (161)
Q Consensus 26 ~~i~ii~~l~~~~l~~~~~~~~~~~~~ 52 (161)
..++.+..++++++.+++.++.++++.
T Consensus 215 s~wf~~~miI~v~~sFVsMiliiqifk 241 (244)
T KOG2678|consen 215 SYWFYITMIIFVILSFVSMILIIQIFK 241 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555566666666666543
No 294
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=41.51 E-value=82 Score=19.18 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031354 31 IIVVFAVVLLVSFLFLYARWF 51 (161)
Q Consensus 31 i~~l~~~~l~~~~~~~~~~~~ 51 (161)
+++..+|++++.++++.++..
T Consensus 12 v~GM~~VF~fL~lLi~~i~~~ 32 (82)
T TIGR01195 12 VLGMGIVFLFLSLLIYAVRGM 32 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 295
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=41.38 E-value=51 Score=23.67 Aligned_cols=19 Identities=21% Similarity=0.460 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031354 31 IIVVFAVVLLVSFLFLYAR 49 (161)
Q Consensus 31 i~~l~~~~l~~~~~~~~~~ 49 (161)
+++++++++.+++.+++.+
T Consensus 4 i~~i~~~~vG~~~G~~~~~ 22 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVRK 22 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 296
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.63 E-value=8.2 Score=29.59 Aligned_cols=51 Identities=22% Similarity=0.622 Sum_probs=38.2
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
....+.|-||...+.-... ..+|.|-|...|...|......||.||....+
T Consensus 102 ~~~~~~~~~~~g~l~vpt~---~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTR---IQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred cCCccceeeeeeeEEeccc---ccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 4456678888776553221 22499999999999999999999999876643
No 297
>PF14851 FAM176: FAM176 family
Probab=39.82 E-value=40 Score=23.28 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031354 34 VFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 34 l~~~~l~~~~~~~~~~~~~~~ 54 (161)
-+++-+++.+..+..++.|+.
T Consensus 29 gVC~GLlLtLcllV~risc~~ 49 (153)
T PF14851_consen 29 GVCAGLLLTLCLLVIRISCRP 49 (153)
T ss_pred HHHHHHHHHHHHHHhhheeec
Confidence 333444444444566666643
No 298
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=39.81 E-value=1.5e+02 Score=24.75 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=9.2
Q ss_pred cc-hhhHHHHHcCC
Q 031354 127 YH-CECVDAWLSAR 139 (161)
Q Consensus 127 FH-~~Ci~~Wl~~~ 139 (161)
|| .-++..||+.+
T Consensus 289 fh~kGsL~dyL~~n 302 (534)
T KOG3653|consen 289 FHPKGSLCDYLKAN 302 (534)
T ss_pred eccCCcHHHHHHhc
Confidence 44 46888888765
No 299
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=39.79 E-value=14 Score=32.28 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=34.0
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHc--C----CCCCcccccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS--A----RSSCPLCRNSLR 150 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~--~----~~~CP~CR~~l~ 150 (161)
......|-.|....- ...-+.+.|||.+|.+|+..|.- + -..|++||..-.
T Consensus 226 ~g~~~mC~~C~~tlf--n~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 226 KGIREMCDRCETTLF--NIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred cCcchhhhhhccccc--ceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 445678999976532 23445556999999999999951 1 134887765543
No 300
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=39.63 E-value=1.1e+02 Score=22.43 Aligned_cols=14 Identities=14% Similarity=0.800 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHh
Q 031354 41 VSFLFLYARWFCRR 54 (161)
Q Consensus 41 ~~~~~~~~~~~~~~ 54 (161)
+++++++.+|..+|
T Consensus 79 I~Liy~l~rwL~rR 92 (219)
T PRK13415 79 IFLIYALVKWLNKR 92 (219)
T ss_pred HHHHHHHHHHHHHh
Confidence 33344445666665
No 301
>PHA02657 hypothetical protein; Provisional
Probab=39.59 E-value=74 Score=19.62 Aligned_cols=14 Identities=21% Similarity=0.043 Sum_probs=6.4
Q ss_pred CHHHHhcCCcEeee
Q 031354 76 DLTTINTLPIVLHR 89 (161)
Q Consensus 76 ~~~~i~~lp~~~~~ 89 (161)
++....+|-.+.|.
T Consensus 71 TRRsF~qLD~VYYT 84 (95)
T PHA02657 71 SKTHFTRLDGVYYT 84 (95)
T ss_pred hHHHHHhhcceEEc
Confidence 34444445444444
No 302
>PHA02831 EEV host range protein; Provisional
Probab=39.41 E-value=53 Score=24.92 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=6.9
Q ss_pred CCCCcccCCCCCcc
Q 031354 8 PFHWHYTELDDHNF 21 (161)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (161)
+..+.+.++|++..
T Consensus 205 ~~~~~~~~~~~~~~ 218 (268)
T PHA02831 205 QPNYLFDDLDEDFN 218 (268)
T ss_pred CccceecccccccC
Confidence 34445555555443
No 303
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=39.39 E-value=29 Score=30.57 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=24.9
Q ss_pred CCccccccccccCCC---eeee--cCCCCCccchhhHHHHH
Q 031354 101 ESECCICLGVFEDGD---KVKI--LPKCRHCYHCECVDAWL 136 (161)
Q Consensus 101 ~~~CaICL~~f~~~~---~v~~--lp~C~H~FH~~Ci~~Wl 136 (161)
...|..|-..|-.-. ..|. ...||++||..|-....
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 467999999995311 1121 33499999999988765
No 304
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=39.12 E-value=72 Score=19.62 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=16.5
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 20 NFQIRGRTLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 20 ~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
...++.+++.+|..-..++++. .+.+.+-++|.|
T Consensus 9 vqplp~~~yyiiA~gga~llL~-~v~l~vvL~C~r 42 (87)
T PF11980_consen 9 VQPLPPYWYYIIAMGGALLLLV-AVCLGVVLYCHR 42 (87)
T ss_pred cCCCCceeeHHHhhccHHHHHH-HHHHHHHHhhhh
Confidence 3346677766666554444433 333333333443
No 305
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=38.73 E-value=77 Score=21.80 Aligned_cols=28 Identities=7% Similarity=0.225 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 27 TLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
++..++-+.++-+++.+++.+++.....
T Consensus 81 ~~~~imPlYtiGI~~f~lY~l~Ki~~~k 108 (152)
T PF15361_consen 81 LMGQIMPLYTIGIVLFILYTLFKIKKKK 108 (152)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555555555555555555433
No 306
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=38.70 E-value=38 Score=25.82 Aligned_cols=6 Identities=17% Similarity=0.301 Sum_probs=2.2
Q ss_pred cchHHH
Q 031354 25 GRTLFS 30 (161)
Q Consensus 25 ~~~i~i 30 (161)
+..++|
T Consensus 227 G~VVlI 232 (281)
T PF12768_consen 227 GFVVLI 232 (281)
T ss_pred eEEEEE
Confidence 333333
No 307
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=38.42 E-value=25 Score=31.87 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=16.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 24 RGRTLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 24 ~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
...|++++.++++.++++++.+++.++-..+
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~GFFK 1006 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKCGFFK 1006 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4455666666666666555555555443333
No 308
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=38.17 E-value=82 Score=20.01 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=4.1
Q ss_pred ccchHHHHHHH
Q 031354 24 RGRTLFSIIVV 34 (161)
Q Consensus 24 ~~~~i~ii~~l 34 (161)
....+++++++
T Consensus 13 e~sl~~~~~~l 23 (108)
T PF07219_consen 13 ETSLWVALILL 23 (108)
T ss_pred EeeHHHHHHHH
Confidence 33333333333
No 309
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=37.78 E-value=74 Score=22.04 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=5.5
Q ss_pred CCcEeeecCC
Q 031354 83 LPIVLHRSEK 92 (161)
Q Consensus 83 lp~~~~~~~~ 92 (161)
+|.++|+...
T Consensus 99 fp~f~ynPkD 108 (175)
T COG4741 99 FPEFKYNPKD 108 (175)
T ss_pred ccCCCcCCcc
Confidence 5666665443
No 310
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=37.75 E-value=45 Score=21.45 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 031354 39 LLVSFLFLYAR 49 (161)
Q Consensus 39 l~~~~~~~~~~ 49 (161)
++++++++..|
T Consensus 27 i~~i~yf~~~R 37 (106)
T PRK05585 27 FFAIFYFLIIR 37 (106)
T ss_pred HHHHHHHHhcc
Confidence 33333333333
No 311
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=37.48 E-value=27 Score=20.21 Aligned_cols=11 Identities=27% Similarity=0.957 Sum_probs=7.9
Q ss_pred CCCcccccccc
Q 031354 140 SSCPLCRNSLR 150 (161)
Q Consensus 140 ~~CP~CR~~l~ 150 (161)
..||.|+.++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 35888888764
No 312
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.35 E-value=36 Score=29.25 Aligned_cols=46 Identities=24% Similarity=0.490 Sum_probs=31.9
Q ss_pred ccccccccccCCCeeeecCCCCC-ccchhhHHHHHc--C----CCCCccccccccCC
Q 031354 103 ECCICLGVFEDGDKVKILPKCRH-CYHCECVDAWLS--A----RSSCPLCRNSLRVD 152 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H-~FH~~Ci~~Wl~--~----~~~CP~CR~~l~~~ 152 (161)
.|+||-..+. +.....||| .-+.+|...-.. + ...||+||..+...
T Consensus 2 ~c~ic~~s~~----~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPD----FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCcc----ccccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 5899977643 334455999 799999877642 3 34589999977543
No 313
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=37.07 E-value=31 Score=27.15 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=14.4
Q ss_pred CCCCCccccccccccCCCeeeecCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCR 124 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~ 124 (161)
+..++.|++|=+. ..|=.-..|. |.
T Consensus 12 edl~ElCPVCGDk-VSGYHYGLLT-CE 36 (475)
T KOG4218|consen 12 EDLGELCPVCGDK-VSGYHYGLLT-CE 36 (475)
T ss_pred cccccccccccCc-cccceeeeee-hh
Confidence 4567789999554 2333444454 53
No 314
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=36.97 E-value=28 Score=21.32 Aligned_cols=6 Identities=50% Similarity=0.916 Sum_probs=2.2
Q ss_pred HHHHHH
Q 031354 43 FLFLYA 48 (161)
Q Consensus 43 ~~~~~~ 48 (161)
++++..
T Consensus 16 ~yf~~~ 21 (84)
T TIGR00739 16 FYFLII 21 (84)
T ss_pred HHHhee
Confidence 333333
No 315
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=36.23 E-value=84 Score=19.08 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAVVLLVSFLFLYAR 49 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~~~~~~ 49 (161)
+..++.+..++.+++++..+++..+
T Consensus 16 G~~iv~~~al~~l~~~isGl~l~~p 40 (88)
T PF13703_consen 16 GRWIVGILALLLLLLLISGLYLWWP 40 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5566666677677777766666654
No 316
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.21 E-value=58 Score=19.43 Aligned_cols=26 Identities=23% Similarity=0.635 Sum_probs=20.3
Q ss_pred CccchhhHHHHHcCCCCCccccccccCC
Q 031354 125 HCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 125 H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
|.|+.+|-..-| +..||.|--.+...
T Consensus 29 cTFCadCae~~l--~g~CPnCGGelv~R 54 (84)
T COG3813 29 CTFCADCAENRL--HGLCPNCGGELVAR 54 (84)
T ss_pred eehhHhHHHHhh--cCcCCCCCchhhcC
Confidence 789999998754 46899997776543
No 317
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=35.91 E-value=29 Score=27.54 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 031354 39 LLVSFLFLYAR 49 (161)
Q Consensus 39 l~~~~~~~~~~ 49 (161)
+++.+.+++.+
T Consensus 312 vl~~~~~~~~~ 322 (361)
T PF12259_consen 312 VLISLAWLYRT 322 (361)
T ss_pred HHHHHHhheee
Confidence 33333444444
No 318
>PF14002 YniB: YniB-like protein
Probab=35.80 E-value=94 Score=21.70 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=9.3
Q ss_pred CCcccCCCCCccccccchHHHH
Q 031354 10 HWHYTELDDHNFQIRGRTLFSI 31 (161)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~ii 31 (161)
.|.++-..+-...+.+..+.+.
T Consensus 57 FW~nSPvP~~~~~f~~~ni~F~ 78 (166)
T PF14002_consen 57 FWNNSPVPDFDNGFSGSNIMFW 78 (166)
T ss_pred hccCCCCCCcccccccccHHHH
Confidence 3555544444433333333333
No 319
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=35.80 E-value=1.4e+02 Score=20.21 Aligned_cols=13 Identities=8% Similarity=-0.056 Sum_probs=6.9
Q ss_pred hcCCCCHHHHhcC
Q 031354 71 LTRGLDLTTINTL 83 (161)
Q Consensus 71 ~~~~~~~~~i~~l 83 (161)
..=+++.+.+..+
T Consensus 97 ~Sf~is~el~~qL 109 (137)
T PRK14585 97 ESLAIPDELYQQL 109 (137)
T ss_pred HHcCCCHHHHHHH
Confidence 3445566655554
No 320
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=35.31 E-value=1.1e+02 Score=20.31 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=6.9
Q ss_pred cchHHHHHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~ 41 (161)
+...-++..|+.++.++
T Consensus 16 ~~l~qv~~~L~lVl~lI 32 (124)
T PRK11486 16 SPLLQVSGALIGIIALI 32 (124)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 321
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=35.21 E-value=35 Score=17.64 Aligned_cols=34 Identities=18% Similarity=0.509 Sum_probs=24.0
Q ss_pred CCCccccccccccCCC-eeeecCCCCCccchhhHHH
Q 031354 100 EESECCICLGVFEDGD-KVKILPKCRHCYHCECVDA 134 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~-~v~~lp~C~H~FH~~Ci~~ 134 (161)
....|.+|.+.+.... .++-.. |+=..|..|...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~C~~-C~~~~H~~C~~~ 44 (49)
T smart00109 10 KPTKCCVCRKSIWGSFQGLRCSW-CKVKCHKKCAEK 44 (49)
T ss_pred CCCCccccccccCcCCCCcCCCC-CCchHHHHHHhh
Confidence 4557999988876532 343344 888899999876
No 322
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=35.13 E-value=20 Score=20.32 Aligned_cols=11 Identities=27% Similarity=1.008 Sum_probs=4.9
Q ss_pred CCccccccccC
Q 031354 141 SCPLCRNSLRV 151 (161)
Q Consensus 141 ~CP~CR~~l~~ 151 (161)
.||.|++++..
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 47788777655
No 323
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=34.93 E-value=14 Score=28.51 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCCCccccccccccCCCeeeecC-CCC--CccchhhHHHHHcCCCCCccccc
Q 031354 99 EEESECCICLGVFEDGDKVKILP-KCR--HCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp-~C~--H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
.....|+||=..-..+ .++.-. .=| |.+|.-|-.+|--.+..||.|-.
T Consensus 182 ~~~~~CPvCGs~P~~s-~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 182 ESRTLCPACGSPPVAS-MVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCCCcCCCCCChhhhh-hhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3456999997653211 111100 012 44556667779888888999954
No 324
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=34.93 E-value=17 Score=20.66 Aligned_cols=27 Identities=30% Similarity=0.733 Sum_probs=17.5
Q ss_pred ccCCCeeeecCCCCCccchhhHHHHHcC-----CCCCccccc
Q 031354 111 FEDGDKVKILPKCRHCYHCECVDAWLSA-----RSSCPLCRN 147 (161)
Q Consensus 111 f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 147 (161)
...|..|+-| ||-+ |.=. ...||.|+.
T Consensus 21 av~G~pVvAL--CGk~--------wvp~rdp~~~PVCP~Ck~ 52 (58)
T PF11238_consen 21 AVMGTPVVAL--CGKV--------WVPTRDPKPFPVCPECKE 52 (58)
T ss_pred HhcCceeEee--eCce--------eCCCCCCCCCCCCcCHHH
Confidence 3356777777 8877 5422 346999964
No 325
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=34.84 E-value=77 Score=23.28 Aligned_cols=8 Identities=13% Similarity=0.077 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 031354 28 LFSIIVVF 35 (161)
Q Consensus 28 i~ii~~l~ 35 (161)
|+++.+++
T Consensus 187 W~i~~~v~ 194 (226)
T PHA02662 187 WTLLLAVA 194 (226)
T ss_pred chhHHHHH
Confidence 33333333
No 326
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=34.71 E-value=97 Score=18.95 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031354 31 IIVVFAVVLLVSFLFLYARWFC 52 (161)
Q Consensus 31 i~~l~~~~l~~~~~~~~~~~~~ 52 (161)
+++-.+|++++.++++.+++--
T Consensus 15 vlGMg~VfvFL~lLI~~i~~ms 36 (82)
T PRK02919 15 FLGMGFVLAFLFLLIFAIRGMS 36 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555554433
No 327
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=34.65 E-value=1.6e+02 Score=20.43 Aligned_cols=13 Identities=23% Similarity=0.135 Sum_probs=6.3
Q ss_pred hcCCCCHHHHhcC
Q 031354 71 LTRGLDLTTINTL 83 (161)
Q Consensus 71 ~~~~~~~~~i~~l 83 (161)
..=+++.+.+..+
T Consensus 106 ~sF~l~~e~i~qL 118 (153)
T PRK14584 106 SSFALSPELIAQL 118 (153)
T ss_pred HHcCCCHHHHHHH
Confidence 3345555555443
No 328
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=34.50 E-value=1e+02 Score=18.35 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=8.2
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAVVLLVSFL 44 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~ 44 (161)
.+-++.++..++++++++++
T Consensus 39 Ttp~Mg~~m~lf~vfl~iil 58 (73)
T PLN00055 39 TTPLMGVAMALFAVFLSIIL 58 (73)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 329
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=34.31 E-value=23 Score=22.90 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=16.4
Q ss_pred CccccccccccCCC-eeeecCCCCCcc
Q 031354 102 SECCICLGVFEDGD-KVKILPKCRHCY 127 (161)
Q Consensus 102 ~~CaICL~~f~~~~-~v~~lp~C~H~F 127 (161)
..|+-|-.+|.-.+ ...+.|-|+|-+
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~EW 29 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYEW 29 (109)
T ss_pred CcCCcCCCcceEecCCeeECccccccc
Confidence 46888888876433 344556677773
No 330
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=34.16 E-value=1.1e+02 Score=19.11 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031354 31 IIVVFAVVLLVSFLFLYARWFCR 53 (161)
Q Consensus 31 i~~l~~~~l~~~~~~~~~~~~~~ 53 (161)
++-.++..+++.++.+..||+.+
T Consensus 77 LiPFL~Gc~~~~v~~l~lrwr~r 99 (100)
T PF10954_consen 77 LIPFLAGCLILGVIALILRWRHR 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444445555555666543
No 331
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=34.10 E-value=1.1e+02 Score=18.68 Aligned_cols=28 Identities=29% Similarity=0.624 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 27 TLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
...-|.+++-++++++...++.|..|.+
T Consensus 47 SFsSIW~iiN~~il~~A~~vyLry~Cf~ 74 (82)
T PF03554_consen 47 SFSSIWAIINVVILLCAFCVYLRYLCFQ 74 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555666666654
No 332
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=34.03 E-value=1.1e+02 Score=22.86 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 25 GRTLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
.+++..++++++.++++..++-|++.++-.
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i~YikVrrm~ 251 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFINYIKVRRME 251 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHhhHH
Confidence 566667777777777777777777665544
No 333
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=33.78 E-value=39 Score=18.53 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=7.6
Q ss_pred CCCCCcccccc
Q 031354 138 ARSSCPLCRNS 148 (161)
Q Consensus 138 ~~~~CP~CR~~ 148 (161)
..-+||+|..+
T Consensus 33 ~~w~CP~C~a~ 43 (50)
T cd00730 33 DDWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCCc
Confidence 34579999653
No 334
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.51 E-value=22 Score=22.21 Aligned_cols=11 Identities=18% Similarity=0.909 Sum_probs=10.1
Q ss_pred cchhhHHHHHc
Q 031354 127 YHCECVDAWLS 137 (161)
Q Consensus 127 FH~~Ci~~Wl~ 137 (161)
||..|+..|..
T Consensus 43 FCRNCLs~Wy~ 53 (104)
T COG3492 43 FCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 335
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=33.39 E-value=20 Score=29.54 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=11.1
Q ss_pred CCCccccccccccCCC
Q 031354 100 EESECCICLGVFEDGD 115 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~ 115 (161)
+.-.|+-||+++-..+
T Consensus 25 ~~~yCp~CL~~~p~~e 40 (483)
T PF05502_consen 25 DSYYCPNCLFEVPSSE 40 (483)
T ss_pred ceeECccccccCChhh
Confidence 4457888888876544
No 336
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=32.41 E-value=18 Score=18.69 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=8.1
Q ss_pred CCccccccccC
Q 031354 141 SCPLCRNSLRV 151 (161)
Q Consensus 141 ~CP~CR~~l~~ 151 (161)
.||.|+..+..
T Consensus 1 ~CP~C~~~l~~ 11 (41)
T PF13453_consen 1 KCPRCGTELEP 11 (41)
T ss_pred CcCCCCcccce
Confidence 49999887654
No 337
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=32.33 E-value=28 Score=24.45 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=21.8
Q ss_pred cccccc---ccccCCCeeeecCCCCCccchhhHHHH
Q 031354 103 ECCICL---GVFEDGDKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 103 ~CaICL---~~f~~~~~v~~lp~C~H~FH~~Ci~~W 135 (161)
.|..|. ++...|..|.-- +|.-.||+.||..-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQ-GCs~sYHk~CLG~R 35 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQ-GCSSSYHKACLGPR 35 (175)
T ss_pred CcccccCCCCCccCCCeEEcC-ccChHHHhhhcCCc
Confidence 377774 555556555444 48899999998763
No 338
>PHA03156 hypothetical protein; Provisional
Probab=32.12 E-value=1.3e+02 Score=18.71 Aligned_cols=25 Identities=16% Similarity=0.398 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 30 SIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 30 ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
-+-+++-++++++...++.+..|.+
T Consensus 58 SIWallN~~i~~~A~~ifL~y~CF~ 82 (90)
T PHA03156 58 SIWAILNGIIFFCASLFFLRHLCFV 82 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555543
No 339
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=32.03 E-value=32 Score=18.04 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCCccccccccccC--CCeeeecCCCCCccchhhHHH
Q 031354 100 EESECCICLGVFED--GDKVKILPKCRHCYHCECVDA 134 (161)
Q Consensus 100 ~~~~CaICL~~f~~--~~~v~~lp~C~H~FH~~Ci~~ 134 (161)
....|.+|.+.+.. ....+-.. |+=..|..|...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~-C~~~~H~~C~~~ 45 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSW-CKVKCHKKCADK 45 (50)
T ss_pred CCCChhhcchhhhccccceeEcCC-CCCchhhhhhcc
Confidence 45579999888764 24444444 888899999765
No 340
>CHL00066 psbH photosystem II protein H
Probab=31.67 E-value=1.2e+02 Score=18.11 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=6.8
Q ss_pred chHHHHHHHHHHHHHHH
Q 031354 26 RTLFSIIVVFAVVLLVS 42 (161)
Q Consensus 26 ~~i~ii~~l~~~~l~~~ 42 (161)
+-++.++..++++++++
T Consensus 40 tp~Mgv~m~lf~vfl~i 56 (73)
T CHL00066 40 TPLMGVAMALFAVFLSI 56 (73)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444433333333
No 341
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=31.63 E-value=15 Score=30.55 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=46.7
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
......|.+|+......+..+.+..|.|-+...|+..|=.....||.|+..+..
T Consensus 257 q~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~ 310 (553)
T KOG4430|consen 257 QENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRT 310 (553)
T ss_pred hhcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccc
Confidence 455679999999998888888888677999999999998888999999887753
No 342
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=31.37 E-value=99 Score=17.14 Aligned_cols=12 Identities=17% Similarity=0.420 Sum_probs=4.5
Q ss_pred hHHHHHHHHHHH
Q 031354 27 TLFSIIVVFAVV 38 (161)
Q Consensus 27 ~i~ii~~l~~~~ 38 (161)
-++.++.+++++
T Consensus 26 plM~~~m~lf~v 37 (52)
T PF00737_consen 26 PLMGVFMALFAV 37 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334333333333
No 343
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=31.19 E-value=5.1 Score=22.52 Aligned_cols=16 Identities=25% Similarity=0.895 Sum_probs=11.9
Q ss_pred cCCCCCccchhhHHHH
Q 031354 120 LPKCRHCYHCECVDAW 135 (161)
Q Consensus 120 lp~C~H~FH~~Ci~~W 135 (161)
-+.|++.|+..|-.+|
T Consensus 43 C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 43 CPSCGTEFCFKCGEPW 58 (64)
T ss_dssp TTSCCSEECSSSTSES
T ss_pred CCCCCCcCccccCccc
Confidence 3448888888887776
No 344
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=31.14 E-value=45 Score=15.88 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=15.8
Q ss_pred ccccccccccCCCeeeecCCCCCccchhh
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCEC 131 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~C 131 (161)
.|.+|-.+......-.-.+ |+..+|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~-c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSE-CCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCC-CCCeEcCcc
Confidence 4778855544332222233 777788777
No 345
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=31.07 E-value=89 Score=16.50 Aligned_cols=14 Identities=14% Similarity=0.536 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 031354 39 LLVSFLFLYARWFC 52 (161)
Q Consensus 39 l~~~~~~~~~~~~~ 52 (161)
..+.+..++.+++.
T Consensus 21 ~~igm~~~~~~~F~ 34 (42)
T PF11346_consen 21 FTIGMGVFFIRYFI 34 (42)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444433
No 346
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.07 E-value=23 Score=27.11 Aligned_cols=31 Identities=29% Similarity=0.547 Sum_probs=24.2
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHH
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVD 133 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~ 133 (161)
..|.||+..-.+++.+.--- |..-||.-|+.
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~-CDRG~HT~CVG 345 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDV-CDRGPHTLCVG 345 (381)
T ss_pred HhhhccCCcccchheecccc-ccCCCCccccc
Confidence 47999999888777765444 88889998865
No 347
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.78 E-value=27 Score=23.37 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=15.1
Q ss_pred CccccccccccCCCeeeecCCCCCccch
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHC 129 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~ 129 (161)
+-=-||.+. +..|.... |||.|+.
T Consensus 58 ~hlfi~qs~---~~rv~rce-cghsf~d 81 (165)
T COG4647 58 DHLFICQSA---QKRVIRCE-CGHSFGD 81 (165)
T ss_pred CcEEEEecc---cccEEEEe-ccccccC
Confidence 334466554 23366667 9999986
No 348
>KOG3195 consensus Uncharacterized membrane protein NPD008/CGI-148 [General function prediction only]
Probab=30.74 E-value=90 Score=22.49 Aligned_cols=37 Identities=16% Similarity=0.389 Sum_probs=18.2
Q ss_pred CCCcccCCCCCcc---ccccchHHHHHHHHHHHHHHHHHH
Q 031354 9 FHWHYTELDDHNF---QIRGRTLFSIIVVFAVVLLVSFLF 45 (161)
Q Consensus 9 ~~~~~~~~~~~~~---~~~~~~i~ii~~l~~~~l~~~~~~ 45 (161)
+.|.+.+.++++. ..+..+.-+-+++..++.++..++
T Consensus 103 ShW~FES~k~~s~~~n~~dsriFWlgL~~~pv~W~if~v~ 142 (213)
T KOG3195|consen 103 SHWVFESAKQSSPNVNAIDSRIFWLGLYLCPVIWIIFAVF 142 (213)
T ss_pred eeEEEeccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777666 334443333333333333333333
No 349
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=30.46 E-value=14 Score=18.70 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=13.3
Q ss_pred CCCccchhhHHHHHcCCCCCccccccc
Q 031354 123 CRHCYHCECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 149 (161)
|||.|-..--..= .....||.|..++
T Consensus 11 Cg~~fe~~~~~~~-~~~~~CP~Cg~~~ 36 (41)
T smart00834 11 CGHTFEVLQKISD-DPLATCPECGGDV 36 (41)
T ss_pred CCCEEEEEEecCC-CCCCCCCCCCCcc
Confidence 7776543110000 2235699998754
No 350
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=30.25 E-value=54 Score=24.88 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=22.2
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHH
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDA 134 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~ 134 (161)
......|+.|=. ........|.|||.+|.+=...
T Consensus 306 ~~tS~~C~~cg~---~~~r~~~C~~cg~~~~rD~naa 339 (364)
T COG0675 306 YYTSKTCPCCGH---LSGRLFKCPRCGFVHDRDVNAA 339 (364)
T ss_pred CCCcccccccCC---ccceeEECCCCCCeehhhHHHH
Confidence 445578999977 2233345566999999875443
No 351
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=29.98 E-value=1.8e+02 Score=19.73 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 27 TLFSIIVVFAVVLLVSFLFLYARWFC 52 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~~~~~~ 52 (161)
+..++..++.++.+++++.++++...
T Consensus 24 ~~~~~gsL~~iL~lil~~~wl~kr~~ 49 (137)
T COG3190 24 LAQMFGSLILILALILFLAWLVKRLG 49 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555554444
No 352
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.64 E-value=43 Score=25.95 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=28.4
Q ss_pred CCCCccccccccccCCCeeeec-C-CCCCccchhhHHHHHcCCCCCccccc
Q 031354 99 EEESECCICLGVFEDGDKVKIL-P-KCRHCYHCECVDAWLSARSSCPLCRN 147 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~l-p-~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 147 (161)
.....|+||=..-..+ .++.- . +=.|.+|.-|-.+|--.+..||.|-.
T Consensus 185 ~~~~~CPvCGs~P~~s-~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSS-VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhh-eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3568999996653211 11110 1 01244666677779888888999954
No 353
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=29.59 E-value=1.6e+02 Score=18.87 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=12.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAVVLLVSFLFLYA 48 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~~~~~ 48 (161)
++.+-++..++.+++++.+++++.
T Consensus 14 g~sW~~LVGVv~~al~~SlLIala 37 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALA 37 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444443
No 354
>PF15050 SCIMP: SCIMP protein
Probab=29.45 E-value=1.4e+02 Score=19.74 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031354 33 VVFAVVLLVSFLFLYARWF 51 (161)
Q Consensus 33 ~l~~~~l~~~~~~~~~~~~ 51 (161)
+++++.++++.+.+-...+
T Consensus 10 iiLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 10 IILAVAIILVSVVLGLILY 28 (133)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 355
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=29.33 E-value=12 Score=23.64 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=16.1
Q ss_pred CCccccccccccCCC-eeeecCCCCCccchhhHHHHHcCC----CCCccccccccCCCC
Q 031354 101 ESECCICLGVFEDGD-KVKILPKCRHCYHCECVDAWLSAR----SSCPLCRNSLRVDSA 154 (161)
Q Consensus 101 ~~~CaICL~~f~~~~-~v~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~l~~~~~ 154 (161)
.+.|++|-+.+.-.+ ...+-+ =||.|- .|-...|... ..|++|.+.....+.
T Consensus 14 ~E~C~~C~~~i~~~~~~~~~C~-~GH~w~-RC~lT~l~i~~~~~r~C~~C~~~~l~~~~ 70 (99)
T PF12660_consen 14 FEKCPICGAPIPFDDLDEAQCE-NGHVWP-RCALTFLPIQTPGVRVCPVCGRRALDPEP 70 (99)
T ss_dssp ---------------SSEEE-T-TS-EEE-B-SSS-SBS-SS-EEE-TTT--EEE-GGG
T ss_pred cccccccccccccCCcCEeECC-CCCEEe-eeeeeeeeeccCCeeEcCCCCCEEecCcc
Confidence 478999988776333 334444 579974 3655555332 469999877665443
No 356
>PRK10220 hypothetical protein; Provisional
Probab=29.04 E-value=41 Score=21.80 Aligned_cols=25 Identities=28% Similarity=0.584 Sum_probs=15.4
Q ss_pred CccccccccccCCC-eeeecCCCCCc
Q 031354 102 SECCICLGVFEDGD-KVKILPKCRHC 126 (161)
Q Consensus 102 ~~CaICL~~f~~~~-~v~~lp~C~H~ 126 (161)
.-|+-|-.+|.-.+ ...+.|-|+|-
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hE 29 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHE 29 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCc
Confidence 46888888766433 33455557776
No 357
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=28.73 E-value=36 Score=21.76 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=13.2
Q ss_pred CCCccchhhHHHHHcCCCCCcccccc
Q 031354 123 CRHCYHCECVDAWLSARSSCPLCRNS 148 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 148 (161)
|||+|-.- ++-+. +-||-|-.+
T Consensus 8 CG~vf~~g--~~~il--~GCp~CG~n 29 (112)
T COG3364 8 CGEVFDDG--SEEIL--SGCPKCGCN 29 (112)
T ss_pred cccccccc--cHHHH--ccCccccch
Confidence 99998764 33222 348888443
No 358
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=28.62 E-value=1.4e+02 Score=18.25 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=7.2
Q ss_pred cchHHHHHHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAVVLLVS 42 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~ 42 (161)
.+.++++++.+.++++.+
T Consensus 14 vNiil~llvc~~~liv~~ 31 (82)
T PF02723_consen 14 VNIILWLLVCLVVLIVCI 31 (82)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334444444433333333
No 359
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=28.61 E-value=1.1e+02 Score=21.01 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031354 29 FSIIVVFAVVLLVSFLFLYARWF 51 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~~~~~ 51 (161)
.++++++.+++++++++.+.|-+
T Consensus 19 ~~~~i~~ll~~l~~~~~~Y~r~r 41 (149)
T PF11694_consen 19 RYILIIILLLVLIFFFIKYLRNR 41 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333444444444444443
No 360
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=28.45 E-value=1.1e+02 Score=22.32 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 031354 35 FAVVLLVSFLFLY 47 (161)
Q Consensus 35 ~~~~l~~~~~~~~ 47 (161)
++.++++..+++.
T Consensus 143 ICT~LfLSTVVLA 155 (227)
T PF05399_consen 143 ICTLLFLSTVVLA 155 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 361
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.44 E-value=1.2e+02 Score=27.79 Aligned_cols=55 Identities=16% Similarity=0.350 Sum_probs=34.4
Q ss_pred CCCCCCccccccccccC---CCeeeecCCCCCccchhhHHHHHc-CCCCCccccccccC
Q 031354 97 DKEEESECCICLGVFED---GDKVKILPKCRHCYHCECVDAWLS-ARSSCPLCRNSLRV 151 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~---~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~ 151 (161)
.......|.||=|+... |+...-.--|+--.|..|.+-=.+ .++.||-|+.....
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 34466789999887653 332211111445589999843222 35789999998873
No 362
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=28.30 E-value=1.6e+02 Score=20.67 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=4.4
Q ss_pred ccccchHHHHH
Q 031354 22 QIRGRTLFSII 32 (161)
Q Consensus 22 ~~~~~~i~ii~ 32 (161)
.....+|.-|+
T Consensus 111 ~~~~g~IaGIv 121 (169)
T PF12301_consen 111 EAEAGTIAGIV 121 (169)
T ss_pred CcccchhhhHH
Confidence 33344444333
No 363
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.20 E-value=42 Score=24.84 Aligned_cols=19 Identities=26% Similarity=0.725 Sum_probs=11.4
Q ss_pred hhHHHHHcCCCCCcccccc
Q 031354 130 ECVDAWLSARSSCPLCRNS 148 (161)
Q Consensus 130 ~Ci~~Wl~~~~~CP~CR~~ 148 (161)
.|-.+==++-..||+|++-
T Consensus 199 sC~qqIHRNAPiCPlCK~K 217 (230)
T PF10146_consen 199 SCHQQIHRNAPICPLCKAK 217 (230)
T ss_pred hHHHHHhcCCCCCcccccc
Confidence 3444332445789999764
No 364
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=27.95 E-value=20 Score=17.48 Aligned_cols=24 Identities=21% Similarity=0.616 Sum_probs=8.3
Q ss_pred ccccccccccCC-CeeeecCCCCCc
Q 031354 103 ECCICLGVFEDG-DKVKILPKCRHC 126 (161)
Q Consensus 103 ~CaICL~~f~~~-~~v~~lp~C~H~ 126 (161)
.|+-|-.++.-. ..+.+-|.|+|-
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCcceeccCCEEeCCccccc
Confidence 466666665432 233344556664
No 365
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=27.76 E-value=30 Score=21.64 Aligned_cols=26 Identities=19% Similarity=0.588 Sum_probs=15.6
Q ss_pred CCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 123 CRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
||-.|-.+ + ++.-..||.|++.=..+
T Consensus 64 CGfef~~~---~-ik~pSRCP~CKSE~Ie~ 89 (97)
T COG3357 64 CGFEFRDD---K-IKKPSRCPKCKSEWIEE 89 (97)
T ss_pred cCcccccc---c-cCCcccCCcchhhcccC
Confidence 77776541 1 12235699998875544
No 366
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.58 E-value=32 Score=29.50 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=28.5
Q ss_pred CCcccccccccc-CCCeeeecCCCCCccchhhHHHHHcCCCCCcccc
Q 031354 101 ESECCICLGVFE-DGDKVKILPKCRHCYHCECVDAWLSARSSCPLCR 146 (161)
Q Consensus 101 ~~~CaICL~~f~-~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 146 (161)
...|-+|-..=. +.+..|.+- |+-.||..| |+.-.+.||+|-
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~-C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTF-CYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHHhcCCcCccccccCccc-cCCcchHhh---hhhhhccCcccC
Confidence 347888854322 244666676 998888776 666677899993
No 367
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=27.16 E-value=67 Score=23.57 Aligned_cols=19 Identities=11% Similarity=0.261 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031354 29 FSIIVVFAVVLLVSFLFLY 47 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~ 47 (161)
-+++++++++|+++.+.++
T Consensus 17 NiaI~IV~lLIiiva~~lf 35 (217)
T PF07423_consen 17 NIAIGIVSLLIIIVAYQLF 35 (217)
T ss_pred HHHHHHHHHHHHHHhhhhe
Confidence 3444444444444443333
No 368
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=27.12 E-value=1.3e+02 Score=17.31 Aligned_cols=17 Identities=18% Similarity=0.493 Sum_probs=6.9
Q ss_pred cchHHHHHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~ 41 (161)
.+-++.++..+++++++
T Consensus 27 TTplMgv~m~Lf~vFl~ 43 (64)
T PRK02624 27 TTPVMAVFMVLFLVFLL 43 (64)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 33444444443333333
No 369
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=27.07 E-value=1.6e+02 Score=22.12 Aligned_cols=8 Identities=38% Similarity=0.929 Sum_probs=5.0
Q ss_pred HHHHHcCC
Q 031354 132 VDAWLSAR 139 (161)
Q Consensus 132 i~~Wl~~~ 139 (161)
.++|++..
T Consensus 216 f~~W~~~~ 223 (247)
T COG1622 216 FDAWVAEV 223 (247)
T ss_pred HHHHHHhh
Confidence 67777543
No 370
>PF15106 TMEM156: TMEM156 protein family
Probab=26.88 E-value=1.1e+02 Score=22.34 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031354 30 SIIVVFAVVLLVSFLFLY 47 (161)
Q Consensus 30 ii~~l~~~~l~~~~~~~~ 47 (161)
+.++++.|++++++++++
T Consensus 178 WYvLVllVfiflii~iI~ 195 (226)
T PF15106_consen 178 WYVLVLLVFIFLIILIIY 195 (226)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444333333
No 371
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=26.62 E-value=25 Score=19.46 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=9.3
Q ss_pred CCCccccccccC
Q 031354 140 SSCPLCRNSLRV 151 (161)
Q Consensus 140 ~~CP~CR~~l~~ 151 (161)
..|++|++++..
T Consensus 2 ~iCvvCK~Pi~~ 13 (53)
T PHA02610 2 KICVVCKQPIEK 13 (53)
T ss_pred ceeeeeCCchhh
Confidence 359999999853
No 372
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=26.47 E-value=42 Score=23.77 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=16.3
Q ss_pred HHHHcCCCCCccccccccCCCCCC
Q 031354 133 DAWLSARSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 133 ~~Wl~~~~~CP~CR~~l~~~~~~~ 156 (161)
+.-+....+||.|-..+...+.-+
T Consensus 126 deA~~~~F~Cp~Cg~~L~~~d~s~ 149 (176)
T COG1675 126 DEAMELGFTCPKCGEDLEEYDSSE 149 (176)
T ss_pred HHHHHhCCCCCCCCchhhhccchH
Confidence 344444588999999887665543
No 373
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=26.33 E-value=38 Score=19.30 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.8
Q ss_pred cccccccccCCCeeeecCCCCC
Q 031354 104 CCICLGVFEDGDKVKILPKCRH 125 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H 125 (161)
=-|=|+++.+|+.|...|.|.-
T Consensus 31 FeIsLeDl~~GE~VArCPSCSL 52 (67)
T COG5216 31 FEISLEDLRNGEVVARCPSCSL 52 (67)
T ss_pred eEEEHHHhhCCceEEEcCCceE
Confidence 3477888899999998888874
No 374
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=26.15 E-value=46 Score=19.25 Aligned_cols=7 Identities=43% Similarity=1.175 Sum_probs=3.1
Q ss_pred CCCCCcc
Q 031354 121 PKCRHCY 127 (161)
Q Consensus 121 p~C~H~F 127 (161)
|.|||.|
T Consensus 57 p~c~r~Y 63 (68)
T PF03966_consen 57 PECGREY 63 (68)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 3355444
No 375
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=26.14 E-value=2e+02 Score=20.91 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=18.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 23 IRGRTLFSIIVVFAVVLLVSFLFLYARWFC 52 (161)
Q Consensus 23 ~~~~~i~ii~~l~~~~l~~~~~~~~~~~~~ 52 (161)
..+.++++..|.+.+++++..+.++.|-++
T Consensus 60 s~T~WvLY~VI~VSaaVIagAVPlLLRARR 89 (207)
T PF10812_consen 60 SGTPWVLYAVIGVSAAVIAGAVPLLLRARR 89 (207)
T ss_pred CCCCEeehHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666666666665544
No 376
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=25.95 E-value=46 Score=24.63 Aligned_cols=20 Identities=25% Similarity=0.654 Sum_probs=12.0
Q ss_pred hhHHHHHcCCCCCccccccc
Q 031354 130 ECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 130 ~Ci~~Wl~~~~~CP~CR~~l 149 (161)
.|-.+--++-..||+|+..-
T Consensus 254 sChqqIHRNAPiCPlCKaKs 273 (286)
T KOG4451|consen 254 SCHQQIHRNAPICPLCKAKS 273 (286)
T ss_pred HHHHHHhcCCCCCcchhhcc
Confidence 33333334557899997643
No 377
>PF15025 DUF4524: Domain of unknown function (DUF4524)
Probab=25.87 E-value=48 Score=22.75 Aligned_cols=20 Identities=25% Similarity=0.680 Sum_probs=14.0
Q ss_pred cccCCCeeeecCCCCCc--cchh
Q 031354 110 VFEDGDKVKILPKCRHC--YHCE 130 (161)
Q Consensus 110 ~f~~~~~v~~lp~C~H~--FH~~ 130 (161)
.|.+|..+.+-| ||+. |+..
T Consensus 13 ~f~Dgs~l~Lsp-cGs~f~~~~p 34 (148)
T PF15025_consen 13 RFSDGSRLQLSP-CGSEFLFEKP 34 (148)
T ss_pred EEcCCCEEEEcC-CCccEEEecC
Confidence 466777887778 9985 4443
No 378
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=25.73 E-value=1.8e+02 Score=19.69 Aligned_cols=11 Identities=9% Similarity=0.307 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 031354 31 IIVVFAVVLLV 41 (161)
Q Consensus 31 i~~l~~~~l~~ 41 (161)
|.++++++.++
T Consensus 6 Is~~iiAiAf~ 16 (139)
T COG4768 6 ISLAIIAIAFL 16 (139)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 379
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=25.50 E-value=2e+02 Score=21.83 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031354 30 SIIVVFAVVLLVSFLFLYARWFC 52 (161)
Q Consensus 30 ii~~l~~~~l~~~~~~~~~~~~~ 52 (161)
++.++++++.+++.+++++....
T Consensus 247 i~ylvvg~i~~v~~i~~~~~~~~ 269 (278)
T PF03381_consen 247 IAYLVVGGICLVLAIIFLIIHYF 269 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444333
No 380
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=25.47 E-value=60 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=17.6
Q ss_pred CCCCCCccccccccccCCCeeee
Q 031354 97 DKEEESECCICLGVFEDGDKVKI 119 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~ 119 (161)
...+.+.|.||.++-.++..+.+
T Consensus 62 ~~te~d~C~ICsd~~Rd~~~icV 84 (198)
T COG0353 62 NLTESDPCDICSDESRDKSQLCV 84 (198)
T ss_pred CcCCCCcCcCcCCcccCCceEEE
Confidence 34567799999999988775544
No 381
>PHA03163 hypothetical protein; Provisional
Probab=25.45 E-value=1.8e+02 Score=18.13 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 30 SIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 30 ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
-+.+++-++++++...++.++.|..
T Consensus 59 SIWaliNv~Ivl~A~~iyL~y~CF~ 83 (92)
T PHA03163 59 SIWAILNVLIMLIACIIYCIYMCFN 83 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555543
No 382
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=25.35 E-value=43 Score=23.57 Aligned_cols=16 Identities=38% Similarity=0.956 Sum_probs=12.6
Q ss_pred CCCCCccccccccCCC
Q 031354 138 ARSSCPLCRNSLRVDS 153 (161)
Q Consensus 138 ~~~~CP~CR~~l~~~~ 153 (161)
.+..||+|-.+|.+..
T Consensus 153 GRP~CPlCg~PlDP~G 168 (171)
T PF11290_consen 153 GRPPCPLCGEPLDPEG 168 (171)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 3678999999987653
No 383
>PRK03427 cell division protein ZipA; Provisional
Probab=25.34 E-value=81 Score=24.74 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 29 FSIIVVFAVVLLVSFLFLYARWFC 52 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~~~~~~ 52 (161)
+|++++.+++|+++++.-++-.++
T Consensus 7 LiLivvGAIAIiAlL~HGlWtsRK 30 (333)
T PRK03427 7 LILIIVGAIAIIALLVHGFWTSRK 30 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccc
Confidence 455555555555555555544433
No 384
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=25.27 E-value=1.7e+02 Score=17.98 Aligned_cols=9 Identities=0% Similarity=0.065 Sum_probs=4.3
Q ss_pred CCCHHHHhc
Q 031354 74 GLDLTTINT 82 (161)
Q Consensus 74 ~~~~~~i~~ 82 (161)
.+..++++.
T Consensus 51 ~lTpDQVrA 59 (92)
T PHA02681 51 KMTDDQVRA 59 (92)
T ss_pred cCCHHHHHH
Confidence 444455444
No 385
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=25.13 E-value=1.9e+02 Score=23.31 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 031354 27 TLFSIIVVFAVVLLVSFLFLYARWFCRRFSHQN 59 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (161)
.+.++..+.++.+.+.++++++.+.++.-.++.
T Consensus 18 sL~~la~v~~~~l~l~Ll~ll~yl~~~CC~r~~ 50 (406)
T PF04906_consen 18 SLLILASVAAACLALSLLFLLIYLICRCCCRRP 50 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 445555555555666666777777777755553
No 386
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=25.01 E-value=36 Score=17.99 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=11.2
Q ss_pred CCCCccccccccCCCC
Q 031354 139 RSSCPLCRNSLRVDSA 154 (161)
Q Consensus 139 ~~~CP~CR~~l~~~~~ 154 (161)
...||.|..++.....
T Consensus 21 ~~~Cp~CG~~~~~~~~ 36 (46)
T PRK00398 21 GVRCPYCGYRILFKER 36 (46)
T ss_pred ceECCCCCCeEEEccC
Confidence 3569999888775443
No 387
>PF05810 NinF: NinF protein; InterPro: IPR008712 This family consists of several bacteriophage NinF proteins as well as related sequences from Escherichia coli.
Probab=25.00 E-value=55 Score=18.45 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=9.0
Q ss_pred cchhhHHHHHc
Q 031354 127 YHCECVDAWLS 137 (161)
Q Consensus 127 FH~~Ci~~Wl~ 137 (161)
-+..|+.+||.
T Consensus 34 ~Ce~C~~E~l~ 44 (58)
T PF05810_consen 34 VCEECCAEWLV 44 (58)
T ss_pred HHHHHHHHHHh
Confidence 46789999986
No 388
>PRK06287 cobalt transport protein CbiN; Validated
Probab=24.88 E-value=2e+02 Score=18.50 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 27 TLFSIIVVFAVVLLVSFLFLYARWF 51 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~~~~~ 51 (161)
.-.++..++.+++++.+.+.+.+..
T Consensus 77 ~g~ilsgiiGv~i~l~l~~~~~~~l 101 (107)
T PRK06287 77 IGEIIAMVIGTLLVLALAYGVGKIF 101 (107)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555656555555444444433
No 389
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=24.80 E-value=34 Score=24.29 Aligned_cols=15 Identities=27% Similarity=0.835 Sum_probs=11.3
Q ss_pred CCCccccccccCCCC
Q 031354 140 SSCPLCRNSLRVDSA 154 (161)
Q Consensus 140 ~~CP~CR~~l~~~~~ 154 (161)
..||+|++-+..+.+
T Consensus 170 ~~c~~~~~~~~~~~~ 184 (187)
T TIGR01367 170 HECPLCLAGIPAEKP 184 (187)
T ss_pred ccCChhhcCCCCcCC
Confidence 459999988876554
No 390
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=24.76 E-value=44 Score=21.57 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=9.5
Q ss_pred CccccccccccCCC
Q 031354 102 SECCICLGVFEDGD 115 (161)
Q Consensus 102 ~~CaICL~~f~~~~ 115 (161)
..|+.|-+||.-.+
T Consensus 4 p~cp~c~sEytYed 17 (112)
T COG2824 4 PPCPKCNSEYTYED 17 (112)
T ss_pred CCCCccCCceEEec
Confidence 45888888776544
No 391
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=24.75 E-value=1.1e+02 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 29 FSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
.+++++++++++++.+++...+++.|
T Consensus 391 ~~~~~~f~~if~iva~ii~~~L~R~r 416 (807)
T KOG1094|consen 391 AILIIIFVAIFLIVALIIALMLWRWR 416 (807)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666667777777744
No 392
>PRK11677 hypothetical protein; Provisional
Probab=24.36 E-value=1.2e+02 Score=20.37 Aligned_cols=13 Identities=15% Similarity=0.094 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 031354 38 VLLVSFLFLYARW 50 (161)
Q Consensus 38 ~l~~~~~~~~~~~ 50 (161)
++.+++-++..|+
T Consensus 11 ivG~iiG~~~~R~ 23 (134)
T PRK11677 11 VVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHhh
Confidence 3333333444443
No 393
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.33 E-value=1.2e+02 Score=18.28 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=7.4
Q ss_pred cCCCCHHHHhcCC
Q 031354 72 TRGLDLTTINTLP 84 (161)
Q Consensus 72 ~~~~~~~~i~~lp 84 (161)
.+|..++.+.+..
T Consensus 46 e~gy~e~~I~~i~ 58 (85)
T PF11337_consen 46 EQGYKESDIKSIK 58 (85)
T ss_pred HcCCcHHHhhhhh
Confidence 4566666665543
No 394
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.30 E-value=1e+02 Score=25.94 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 031354 43 FLFLYARWFCR 53 (161)
Q Consensus 43 ~~~~~~~~~~~ 53 (161)
+++++..+.++
T Consensus 15 ~~~~~~~~~rr 25 (569)
T PRK04778 15 IAYLAGLILRK 25 (569)
T ss_pred HHHHHHHHHHH
Confidence 33344433333
No 395
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=24.23 E-value=70 Score=24.90 Aligned_cols=51 Identities=24% Similarity=0.466 Sum_probs=28.0
Q ss_pred CCCCCCCccccccccccCCCeeeecCC----CC-------Cc----cchhhHHHHHcCC-------CCCccccccccCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPK----CR-------HC----YHCECVDAWLSAR-------SSCPLCRNSLRVD 152 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~----C~-------H~----FH~~Ci~~Wl~~~-------~~CP~CR~~l~~~ 152 (161)
+...+...|+.|-.. |..||. |. |. -|.-=+..|.+.- .-|=.|..++...
T Consensus 303 ~~~~gGy~CP~Cktk------VCsLPi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~ 375 (421)
T COG5151 303 EVKGGGYECPVCKTK------VCSLPISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKP 375 (421)
T ss_pred eeccCceeCCcccce------eecCCccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCCCccceeccCCCCCC
Confidence 345667788888554 555552 32 21 2223355665431 1299998866544
No 396
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=24.07 E-value=26 Score=17.43 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=7.8
Q ss_pred CCccccccccCC
Q 031354 141 SCPLCRNSLRVD 152 (161)
Q Consensus 141 ~CP~CR~~l~~~ 152 (161)
.||.|.+++...
T Consensus 6 ~C~nC~R~v~a~ 17 (33)
T PF08209_consen 6 ECPNCGRPVAAS 17 (33)
T ss_dssp E-TTTSSEEEGG
T ss_pred ECCCCcCCcchh
Confidence 499998877543
No 397
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=24.07 E-value=45 Score=24.82 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=29.0
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCC--Ccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSS--CPL 144 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~--CP~ 144 (161)
+..|+|=+..+.. .+.-.. |+|.|-.+=|.+.++...+ ||.
T Consensus 189 ~nrCpitl~p~~~--pils~k-cnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFY--PILSSK-CNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchh--HHHHhh-hcccccHHHHHHHhcCCceeecch
Confidence 5689987765432 233334 9999999999999986544 774
No 398
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=24.05 E-value=33 Score=19.22 Aligned_cols=12 Identities=17% Similarity=0.675 Sum_probs=9.7
Q ss_pred CCccccccccCC
Q 031354 141 SCPLCRNSLRVD 152 (161)
Q Consensus 141 ~CP~CR~~l~~~ 152 (161)
.|.+|++++...
T Consensus 3 ~CvVCKqpi~~a 14 (54)
T PF10886_consen 3 ICVVCKQPIDDA 14 (54)
T ss_pred eeeeeCCccCcc
Confidence 589999998764
No 399
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=23.90 E-value=2e+02 Score=19.97 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 031354 36 AVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~ 54 (161)
..++.+++.++.+++..++
T Consensus 15 iGl~~f~iYyfvF~flI~k 33 (161)
T PRK09702 15 IGLCFTLLYFVVFRTLILQ 33 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444
No 400
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.79 E-value=49 Score=16.40 Aligned_cols=9 Identities=33% Similarity=1.213 Sum_probs=5.9
Q ss_pred CCCcccccc
Q 031354 140 SSCPLCRNS 148 (161)
Q Consensus 140 ~~CP~CR~~ 148 (161)
..||+|..+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 468888653
No 401
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.68 E-value=1.6e+02 Score=21.88 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=6.2
Q ss_pred CCCccccccchHHHHH
Q 031354 17 DDHNFQIRGRTLFSII 32 (161)
Q Consensus 17 ~~~~~~~~~~~i~ii~ 32 (161)
++++++.-+.++++++
T Consensus 176 ~~~gl~GETvFL~~ll 191 (261)
T KOG1631|consen 176 DDSGLSGETVFLYILL 191 (261)
T ss_pred cCCCcccchhHHHHHH
Confidence 3444443333333333
No 402
>PHA02909 hypothetical protein; Provisional
Probab=23.62 E-value=1.5e+02 Score=16.68 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 031354 4 QESQPFH 10 (161)
Q Consensus 4 ~~~~~~~ 10 (161)
|+++||-
T Consensus 6 qnpdpny 12 (72)
T PHA02909 6 QNPDPNY 12 (72)
T ss_pred cCcCCCe
Confidence 4455543
No 403
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=23.42 E-value=52 Score=17.22 Aligned_cols=17 Identities=29% Similarity=0.722 Sum_probs=11.5
Q ss_pred HHcCCCCCccccccccC
Q 031354 135 WLSARSSCPLCRNSLRV 151 (161)
Q Consensus 135 Wl~~~~~CP~CR~~l~~ 151 (161)
|-.-...||.|..++..
T Consensus 13 ~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 13 WTMLDEHCPDCGTPLMR 29 (41)
T ss_pred HhHhcCccCCCCCeeEE
Confidence 43345678888877765
No 404
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=23.30 E-value=40 Score=28.85 Aligned_cols=27 Identities=37% Similarity=0.853 Sum_probs=21.7
Q ss_pred CCCccchhhHHHHHcC-----CCCCccccccc
Q 031354 123 CRHCYHCECVDAWLSA-----RSSCPLCRNSL 149 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~l 149 (161)
||-.||..|+..|+.. ...||-||...
T Consensus 41 c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 41 CGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 7889999999999863 25699887654
No 405
>PF05058 ActA: ActA Protein; InterPro: IPR007752 The ActA family is found in Listeria and is associated with motility. ActA protein acts as a scaffold to assemble and activate host cell actin cytoskeletal factors at the bacterial surface, resulting in directional actin polymerisation and propulsion of the bacterium through the cytoplasm of the host cell [, ].
Probab=23.28 E-value=1.3e+02 Score=25.33 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=17.2
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 031354 20 NFQIRGRTLFSIIVVFAVVLLVSFLFLYAR 49 (161)
Q Consensus 20 ~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~ 49 (161)
......++++++.+|.+.++.+++++=.++
T Consensus 599 ~ee~gnnT~Li~allAigVisL~vfIKIi~ 628 (633)
T PF05058_consen 599 NEESGNNTTLIIALLAIGVISLGVFIKIIR 628 (633)
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666777777666665555444443
No 406
>PF15281 Consortin_C: Consortin C-terminus
Probab=23.21 E-value=1.3e+02 Score=19.60 Aligned_cols=19 Identities=11% Similarity=0.427 Sum_probs=7.7
Q ss_pred cccchHHHHHHHHHHHHHH
Q 031354 23 IRGRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 23 ~~~~~i~ii~~l~~~~l~~ 41 (161)
..+...++++++..+.+++
T Consensus 49 ~~g~Scl~L~LlclvTv~l 67 (113)
T PF15281_consen 49 VGGDSCLLLLLLCLVTVVL 67 (113)
T ss_pred cCCCccHHHHHHHHHHHHH
Confidence 3334444444444444333
No 407
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=23.06 E-value=64 Score=16.72 Aligned_cols=16 Identities=25% Similarity=0.806 Sum_probs=7.4
Q ss_pred HHHHHcCCC-CCccccc
Q 031354 132 VDAWLSARS-SCPLCRN 147 (161)
Q Consensus 132 i~~Wl~~~~-~CP~CR~ 147 (161)
++-.|.+|. .||.|-+
T Consensus 5 lelll~~H~~dC~~C~~ 21 (41)
T PF10588_consen 5 LELLLANHPLDCPTCDK 21 (41)
T ss_dssp HHHHHTT----TTT-TT
T ss_pred HHHHHhCCCCcCcCCCC
Confidence 344556664 4999954
No 408
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=22.97 E-value=41 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=14.0
Q ss_pred hhhHHHHHc-CCCCCcccccccc
Q 031354 129 CECVDAWLS-ARSSCPLCRNSLR 150 (161)
Q Consensus 129 ~~Ci~~Wl~-~~~~CP~CR~~l~ 150 (161)
+.||++==. ...-||+||-...
T Consensus 97 ktCIrkn~~~~gnpCPICRDeyL 119 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEYL 119 (239)
T ss_pred hHHHhhcCeecCCCCCccccceE
Confidence 567776321 2345999998754
No 409
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=22.78 E-value=1.3e+02 Score=21.21 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=12.7
Q ss_pred HcCCCCCccccccccCCC
Q 031354 136 LSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 136 l~~~~~CP~CR~~l~~~~ 153 (161)
+...-.||.|...+...+
T Consensus 133 ~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 133 MEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred hhcCCcCCCCCCCCeecc
Confidence 344567999988886543
No 410
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=22.70 E-value=38 Score=23.27 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=10.1
Q ss_pred CCCCccccccccCCCCCCC
Q 031354 139 RSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 139 ~~~CP~CR~~l~~~~~~~~ 157 (161)
...|-.+...-...+++|+
T Consensus 129 ets~~YyNfqkP~~~~~pq 147 (158)
T PF11770_consen 129 ETSSEYYNFQKPSTPEVPQ 147 (158)
T ss_pred CCchhhhcccCCCCCCCCC
Confidence 3456666665555444444
No 411
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=22.68 E-value=64 Score=18.30 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=13.8
Q ss_pred cccccccccCCCeeeecCCCCCccchh
Q 031354 104 CCICLGVFEDGDKVKILPKCRHCYHCE 130 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H~FH~~ 130 (161)
|..|... .++...-|. |||+++..
T Consensus 1 C~~C~~~--~~~lw~CL~-Cg~~~C~~ 24 (63)
T PF02148_consen 1 CSVCGST--NSNLWLCLT-CGYVGCGR 24 (63)
T ss_dssp -SSSHTC--SSSEEEETT-TS-EEETT
T ss_pred CCCCCCc--CCceEEeCC-CCcccccC
Confidence 5556544 344455676 99998874
No 412
>PRK11595 DNA utilization protein GntX; Provisional
Probab=22.64 E-value=88 Score=22.82 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=11.4
Q ss_pred cchhhHHHHHcCCCCCccccccc
Q 031354 127 YHCECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 127 FH~~Ci~~Wl~~~~~CP~CR~~l 149 (161)
.|..|...|-.....||.|-.++
T Consensus 22 lC~~C~~~l~~~~~~C~~Cg~~~ 44 (227)
T PRK11595 22 ICSVCSRALRTLKTCCPQCGLPA 44 (227)
T ss_pred ccHHHHhhCCcccCcCccCCCcC
Confidence 45555555432234566665443
No 413
>PRK12705 hypothetical protein; Provisional
Probab=22.60 E-value=1.6e+02 Score=24.71 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 031354 31 IIVVFAVVL 39 (161)
Q Consensus 31 i~~l~~~~l 39 (161)
|++++++++
T Consensus 9 ~~~~~~~~~ 17 (508)
T PRK12705 9 ILLLLIGLL 17 (508)
T ss_pred HHHHHHHHH
Confidence 333333333
No 414
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=21.74 E-value=1.2e+02 Score=17.31 Aligned_cols=12 Identities=0% Similarity=0.166 Sum_probs=5.2
Q ss_pred chHHHHHHHHHH
Q 031354 26 RTLFSIIVVFAV 37 (161)
Q Consensus 26 ~~i~ii~~l~~~ 37 (161)
++++++++++++
T Consensus 7 YWWiiLl~lvG~ 18 (63)
T PF13980_consen 7 YWWIILLILVGM 18 (63)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 415
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=21.66 E-value=98 Score=22.97 Aligned_cols=9 Identities=22% Similarity=0.526 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 031354 41 VSFLFLYAR 49 (161)
Q Consensus 41 ~~~~~~~~~ 49 (161)
+.++|++.-
T Consensus 202 lpv~FY~~s 210 (237)
T PF09777_consen 202 LPVLFYLSS 210 (237)
T ss_pred HHHHHHHhh
Confidence 333444433
No 416
>PHA03265 envelope glycoprotein D; Provisional
Probab=21.61 E-value=80 Score=25.02 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 31 IIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 31 i~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
++.++++-++++..++++.|++++
T Consensus 353 ~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 353 SVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred EEccchhhhhhhhHHHHHHhhhhh
Confidence 333334444444444555444443
No 417
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=21.60 E-value=94 Score=15.38 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=2.6
Q ss_pred cccccc
Q 031354 104 CCICLG 109 (161)
Q Consensus 104 CaICL~ 109 (161)
|+=|-.
T Consensus 5 CP~C~~ 10 (38)
T TIGR02098 5 CPNCKT 10 (38)
T ss_pred CCCCCC
Confidence 444444
No 418
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=21.59 E-value=2.4e+02 Score=23.46 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 27 TLFSIIVVFAVVLLVSFLFLYARW 50 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~~~~ 50 (161)
.++++..+.++.+.+.++++++.+
T Consensus 42 aL~lla~l~aa~l~l~Ll~ll~yl 65 (526)
T KOG4433|consen 42 ALLLLAALAAACLGLSLLFLLFYL 65 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444444433
No 419
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=21.54 E-value=61 Score=15.81 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=9.9
Q ss_pred CCccccccccCCCCCCC
Q 031354 141 SCPLCRNSLRVDSALPS 157 (161)
Q Consensus 141 ~CP~CR~~l~~~~~~~~ 157 (161)
.|+-||..|..+..++.
T Consensus 3 ~C~~C~t~L~yP~gA~~ 19 (31)
T TIGR01053 3 VCGGCRTLLMYPRGASS 19 (31)
T ss_pred CcCCCCcEeecCCCCCe
Confidence 46666666665555443
No 420
>KOG3816 consensus Cell differentiation regulator of the Headcase family [Signal transduction mechanisms]
Probab=21.51 E-value=42 Score=26.92 Aligned_cols=29 Identities=28% Similarity=0.619 Sum_probs=20.8
Q ss_pred cccccccccCCCeeeecCCCCCccchhhHHHHH
Q 031354 104 CCICLGVFEDGDKVKILPKCRHCYHCECVDAWL 136 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl 136 (161)
=+||.-...+.+.+ | |+...|..|...|-
T Consensus 91 ~~~C~~VvCNNE~C---~-~~~~MH~qCF~~WE 119 (526)
T KOG3816|consen 91 PLICSFVVCNNEHC---P-CSTWMHLQCFYEWE 119 (526)
T ss_pred hhhceEEeecCCCC---C-hhhHHHHHHHHHHH
Confidence 34555554455544 6 99999999999995
No 421
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=21.49 E-value=52 Score=18.38 Aligned_cols=13 Identities=23% Similarity=0.879 Sum_probs=8.2
Q ss_pred CCccccccccCCC
Q 031354 141 SCPLCRNSLRVDS 153 (161)
Q Consensus 141 ~CP~CR~~l~~~~ 153 (161)
+||.|-..+..+.
T Consensus 4 ~CP~CG~~iev~~ 16 (54)
T TIGR01206 4 ECPDCGAEIELEN 16 (54)
T ss_pred CCCCCCCEEecCC
Confidence 5777776665543
No 422
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=21.45 E-value=72 Score=18.27 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=13.5
Q ss_pred CCCeeeecCCCCCccchhh
Q 031354 113 DGDKVKILPKCRHCYHCEC 131 (161)
Q Consensus 113 ~~~~v~~lp~C~H~FH~~C 131 (161)
+++=|..|. |||.=|..=
T Consensus 8 e~hWVA~L~-CGH~QHvRH 25 (61)
T PF12088_consen 8 EGHWVAELS-CGHTQHVRH 25 (61)
T ss_pred cCCEEEEec-ccccccccC
Confidence 466788999 998877543
No 423
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=21.39 E-value=1.3e+02 Score=20.67 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=12.2
Q ss_pred cCCCCCccccccccCCC
Q 031354 137 SARSSCPLCRNSLRVDS 153 (161)
Q Consensus 137 ~~~~~CP~CR~~l~~~~ 153 (161)
...-.||.|...+...+
T Consensus 126 ~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 126 ELNFTCPRCGAMLDYLD 142 (158)
T ss_pred HcCCcCCCCCCEeeecc
Confidence 34567999988876544
No 424
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=21.29 E-value=55 Score=17.63 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 031354 39 LLVSFLFLYARWFCRR 54 (161)
Q Consensus 39 l~~~~~~~~~~~~~~~ 54 (161)
.+++.+.++..+++++
T Consensus 29 a~fi~lt~yal~r~~~ 44 (46)
T PF11431_consen 29 AVFIGLTIYALWRRRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344445555555444
No 425
>PRK13844 recombination protein RecR; Provisional
Probab=21.25 E-value=94 Score=22.52 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=16.5
Q ss_pred CCCCCccccccccccCCCeeee
Q 031354 98 KEEESECCICLGVFEDGDKVKI 119 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~ 119 (161)
..+.+.|+||.++-.+...+.+
T Consensus 66 lte~~~C~IC~d~~Rd~~~iCV 87 (200)
T PRK13844 66 LTEDDVCNICSNTNRDDTKLCI 87 (200)
T ss_pred CCCCCCCCCCCCCCCCCCEEEE
Confidence 4566789999999887665544
No 426
>PF14353 CpXC: CpXC protein
Probab=21.15 E-value=76 Score=20.75 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=0.0
Q ss_pred CCccccccccccC---------------------CCeeeecCCCCCccc
Q 031354 101 ESECCICLGVFED---------------------GDKVKILPKCRHCYH 128 (161)
Q Consensus 101 ~~~CaICL~~f~~---------------------~~~v~~lp~C~H~FH 128 (161)
+-.|+-|-..|.. .--..+.|.|||.|.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
No 427
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=21.12 E-value=1.8e+02 Score=23.14 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=0.0
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 19 HNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWFCR 53 (161)
Q Consensus 19 ~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~ 53 (161)
.++.+....++++++++++++++.+++.+++...+
T Consensus 33 ~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~ 67 (409)
T TIGR00540 33 ANRIIEMSITGLAIFFIIALAIIFAFEWGLRRFFR 67 (409)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 428
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=21.12 E-value=1.8e+02 Score=16.68 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhhHHh
Q 031354 27 TLFSIIVVFAVVLLVSFLFLYARWFCRRFSHQNSNPDVPRAQQA 70 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (161)
+++++.++++..+.-.++.+++|..+.- -.+.++...+++-+.
T Consensus 29 iiiflailfgftiagwlvvfcirlv~sa-ilr~r~aih~eqlqk 71 (73)
T PF07069_consen 29 IIIFLAILFGFTIAGWLVVFCIRLVCSA-ILRARSAIHPEQLQK 71 (73)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhcccccChHHHhh
No 429
>PRK07758 hypothetical protein; Provisional
Probab=21.10 E-value=66 Score=20.32 Aligned_cols=18 Identities=22% Similarity=0.637 Sum_probs=0.0
Q ss_pred CCCccccccccCCCCCCC
Q 031354 140 SSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 140 ~~CP~CR~~l~~~~~~~~ 157 (161)
.+||.|....-+....++
T Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (95)
T PRK07758 23 PTCPTCEKERKPKEGFLS 40 (95)
T ss_pred CCCcccccccCCCCCCCc
No 430
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=21.00 E-value=33 Score=20.73 Aligned_cols=9 Identities=44% Similarity=1.272 Sum_probs=0.0
Q ss_pred CCCCccccc
Q 031354 139 RSSCPLCRN 147 (161)
Q Consensus 139 ~~~CP~CR~ 147 (161)
+..||.|+.
T Consensus 7 ~~~Cp~C~~ 15 (86)
T TIGR02183 7 RPGCPYCVR 15 (86)
T ss_pred CCCCccHHH
No 431
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=20.83 E-value=2.6e+02 Score=18.32 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhhHHhhcCCCCHHHHhcCC
Q 031354 25 GRTLFSIIVVFAVVLLVSFLFLYARWFCRRFSHQNSNPDVPRAQQALTRGLDLTTINTLP 84 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lp 84 (161)
+..+++..+++.+....+.+.+..+.+++. +.++.+.++.+.
T Consensus 77 pQalvLTaIVI~~a~~A~~Lal~i~~yr~~------------------gt~d~d~l~~l~ 118 (119)
T PRK08388 77 PQALVLTSIVIGVCVLSLAMALTINAYRHY------------------GTLDVTKLRRLR 118 (119)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------------CCCCHHHHHhhc
No 432
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.82 E-value=81 Score=22.93 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=0.0
Q ss_pred CCCCccccccccccC---------------------CC------eeeecCCCCCccchh
Q 031354 99 EEESECCICLGVFED---------------------GD------KVKILPKCRHCYHCE 130 (161)
Q Consensus 99 ~~~~~CaICL~~f~~---------------------~~------~v~~lp~C~H~FH~~ 130 (161)
.....||+|-.+|.. ++ .|.+.|+||-.|...
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
No 433
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=20.79 E-value=1.1e+02 Score=20.26 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=0.0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHH
Q 031354 20 NFQIRGRTLFSIIVVFAVVLLVSFLFLY 47 (161)
Q Consensus 20 ~~~~~~~~i~ii~~l~~~~l~~~~~~~~ 47 (161)
+..+...+++.+++++++++++.++.++
T Consensus 1 Nl~I~~KL~~~f~~~~~l~~~~~~~~~~ 28 (181)
T PF12729_consen 1 NLSIRTKLILGFGLIILLLLIVGIVGLY 28 (181)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH
No 434
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=20.68 E-value=1.8e+02 Score=16.39 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHH
Q 031354 22 QIRGRTLFSIIVVFAVVLLVSFLFL 46 (161)
Q Consensus 22 ~~~~~~i~ii~~l~~~~l~~~~~~~ 46 (161)
+.++.....++++++.++++.+.++
T Consensus 8 ~~p~d~~~~lLiliis~~f~lI~~l 32 (61)
T PF06692_consen 8 SAPGDYSGPLLILIISFVFFLITSL 32 (61)
T ss_pred CCCccchhHHHHHHHHHHHHHHhhh
No 435
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=20.64 E-value=1.7e+02 Score=16.15 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhh
Q 031354 29 FSIIVVFAVVLLVSFLFLYARWFCRRFSHQNSNPDVPRA 67 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (161)
++.+++...+++.++....+.|-.+..+-........+.
T Consensus 3 il~~LIpiSl~l~~~~l~~f~Wavk~GQfDDle~~a~ri 41 (51)
T TIGR00847 3 ILTILIPISLLLGGVGLVAFLWSLKSGQYDDLKGAAWRI 41 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccHHHHH
No 436
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=20.51 E-value=4.5e+02 Score=23.77 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCCCCCCCcccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCCChhhHHhhcCCCCHHHH
Q 031354 3 SQESQPFHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWFCRRF--SHQNSNPDVPRAQQALTRGLDLTTI 80 (161)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i 80 (161)
...+.+..+.....+..........+++..++.+++++++.+++.....++|+ .+.+...........-..+
T Consensus 524 G~~S~~~~fqT~~~~~~~~~~~~l~~i~g~~~~~v~~lll~~vv~~~~~~~r~~~~~~~~~~~~t~~~~~~~~~------ 597 (996)
T KOG0196|consen 524 GPYSGKHEFQTLPSESSSQSGEQLPLIIGSILAGVVFLLLAAVVVVAIVCSRKRCGYSRAEQEYTEKLQHYSNG------ 597 (996)
T ss_pred CCCCCceeeeecCcccccccccchhhHHHHHHHHHHHHHHHHHHHHhheeecccccchhcccCCChhHhhhhcC------
Q ss_pred hcCCcEeeecCCCCCCCCCC
Q 031354 81 NTLPIVLHRSEKSTKDDKEE 100 (161)
Q Consensus 81 ~~lp~~~~~~~~~~~~~~~~ 100 (161)
.++|-.+.....-+.++...
T Consensus 598 ~~~pG~k~YiDP~TYEDPnq 617 (996)
T KOG0196|consen 598 EQLPGTKTYIDPHTYEDPNQ 617 (996)
T ss_pred CCCCCceeecCCccccCccH
No 437
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.46 E-value=57 Score=18.60 Aligned_cols=17 Identities=18% Similarity=0.602 Sum_probs=0.0
Q ss_pred CCCCccccccccCCCCC
Q 031354 139 RSSCPLCRNSLRVDSAL 155 (161)
Q Consensus 139 ~~~CP~CR~~l~~~~~~ 155 (161)
|.-||+|-..|.+++..
T Consensus 8 H~HC~VCg~aIp~de~~ 24 (64)
T COG4068 8 HRHCVVCGKAIPPDEQV 24 (64)
T ss_pred CccccccCCcCCCccch
No 438
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.42 E-value=58 Score=17.22 Aligned_cols=13 Identities=23% Similarity=0.779 Sum_probs=0.0
Q ss_pred cCCCCCccccccc
Q 031354 137 SARSSCPLCRNSL 149 (161)
Q Consensus 137 ~~~~~CP~CR~~l 149 (161)
...+.||+|-.++
T Consensus 6 lp~K~C~~C~rpf 18 (42)
T PF10013_consen 6 LPSKICPVCGRPF 18 (42)
T ss_pred CCCCcCcccCCcc
No 439
>PRK00076 recR recombination protein RecR; Reviewed
Probab=20.36 E-value=98 Score=22.33 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=0.0
Q ss_pred CCCCCCccccccccccCCCeeee
Q 031354 97 DKEEESECCICLGVFEDGDKVKI 119 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~ 119 (161)
...+.+.|+||.++-.+...+.+
T Consensus 61 ~lse~~~C~IC~d~~Rd~~~icV 83 (196)
T PRK00076 61 NLTEQDPCEICSDPRRDQSLICV 83 (196)
T ss_pred CcCCCCcCCCCCCCCCCCCEEEE
No 440
>PHA03281 envelope glycoprotein E; Provisional
Probab=20.36 E-value=2.2e+02 Score=24.14 Aligned_cols=57 Identities=11% Similarity=-0.046 Sum_probs=0.0
Q ss_pred CCCCCCCcccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 031354 5 ESQPFHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWFCRRFSHQNSN 61 (161)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 61 (161)
...|+..+..+......+.+....-+++.-+.+.++++++++.+....+.+++++..
T Consensus 533 ~~~p~~~~~~~~~s~~~~~p~~~y~~l~~~~a~~~ll~l~~~~~c~~~~~~~~~~~~ 589 (642)
T PHA03281 533 PSKPKEIANNDVISEPGTFPFKRYAAITGGFAALALLCLAIALICTAKKFGHKAYRS 589 (642)
T ss_pred CCCcccccCCccccccCCCCeEeehhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec
No 441
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.28 E-value=68 Score=29.14 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCC-----CccchhhHHHHHcCCCCCccccccccCCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCR-----HCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~-----H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
+.+.....|+=|=... .....|.|| ..||.+| .+......||-|...+...+
T Consensus 621 eVEVg~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 621 EVEIGRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPYS 677 (1121)
T ss_pred eecccCccCCCCCCcC----CcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCccc
No 442
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=20.21 E-value=33 Score=27.91 Aligned_cols=14 Identities=36% Similarity=0.512 Sum_probs=0.0
Q ss_pred CCCccccccccccC
Q 031354 100 EESECCICLGVFED 113 (161)
Q Consensus 100 ~~~~CaICL~~f~~ 113 (161)
+...|+||+.+|.+
T Consensus 14 egflCPiC~~dl~~ 27 (505)
T KOG1842|consen 14 EGFLCPICLLDLPN 27 (505)
T ss_pred hcccCchHhhhhhh
No 443
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=20.16 E-value=2.4e+02 Score=19.55 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 16 LDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWF 51 (161)
Q Consensus 16 ~~~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~ 51 (161)
..+.-+..+...+++.++.+.++++++..+++-...
T Consensus 9 ~~~~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~ 44 (175)
T PRK14472 9 LSGGLLSPNPGLIFWTAVTFVIVLLILKKIAWGPIL 44 (175)
T ss_pred hcCCccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH
No 444
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=20.16 E-value=31 Score=15.74 Aligned_cols=11 Identities=36% Similarity=1.150 Sum_probs=0.0
Q ss_pred CccccccccCC
Q 031354 142 CPLCRNSLRVD 152 (161)
Q Consensus 142 CP~CR~~l~~~ 152 (161)
||.|.+.....
T Consensus 5 C~~CgR~F~~~ 15 (25)
T PF13913_consen 5 CPICGRKFNPD 15 (25)
T ss_pred CCCCCCEECHH
No 445
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=20.15 E-value=43 Score=31.52 Aligned_cols=15 Identities=27% Similarity=0.913 Sum_probs=0.0
Q ss_pred eecCCCCCccchhhHH
Q 031354 118 KILPKCRHCYHCECVD 133 (161)
Q Consensus 118 ~~lp~C~H~FH~~Ci~ 133 (161)
|+-. |||-||.+|+.
T Consensus 877 R~~~-C~Hsl~rD~L~ 891 (1598)
T KOG0230|consen 877 RVAS-CGHSLHRDCLR 891 (1598)
T ss_pred cccC-Ccchhhhhhhh
No 446
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=20.09 E-value=45 Score=18.02 Aligned_cols=8 Identities=38% Similarity=1.269 Sum_probs=0.0
Q ss_pred CCcccccc
Q 031354 141 SCPLCRNS 148 (161)
Q Consensus 141 ~CP~CR~~ 148 (161)
+||+|...
T Consensus 36 ~CP~C~a~ 43 (47)
T PF00301_consen 36 VCPVCGAP 43 (47)
T ss_dssp B-TTTSSB
T ss_pred cCcCCCCc
No 447
>PF12907 zf-met2: Zinc-binding
Probab=20.08 E-value=28 Score=18.18 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=0.0
Q ss_pred CCCCccccccc
Q 031354 139 RSSCPLCRNSL 149 (161)
Q Consensus 139 ~~~CP~CR~~l 149 (161)
+..|++||+..
T Consensus 1 ~i~C~iC~qtF 11 (40)
T PF12907_consen 1 NIICKICRQTF 11 (40)
T ss_pred CcCcHHhhHHH
Done!