Query 031354
Match_columns 161
No_of_seqs 136 out of 2046
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 20:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.9 6.5E-23 2.2E-27 128.9 6.9 79 69-151 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.8 3.9E-22 1.3E-26 121.0 3.4 70 79-153 5-74 (75)
3 2kiz_A E3 ubiquitin-protein li 99.8 3.1E-20 1.1E-24 110.7 6.3 59 95-154 8-66 (69)
4 1iym_A EL5; ring-H2 finger, ub 99.8 1.3E-20 4.5E-25 107.4 4.1 52 99-150 3-54 (55)
5 2ep4_A Ring finger protein 24; 99.8 4.1E-20 1.4E-24 111.7 6.3 61 96-157 10-70 (74)
6 2ect_A Ring finger protein 126 99.8 5.4E-20 1.9E-24 112.2 6.4 62 95-157 9-70 (78)
7 2ecl_A Ring-box protein 2; RNF 99.8 7.1E-20 2.4E-24 112.5 4.1 53 100-152 14-77 (81)
8 2ecm_A Ring finger and CHY zin 99.8 5.3E-19 1.8E-23 100.7 4.2 51 99-150 3-54 (55)
9 2d8s_A Cellular modulator of i 99.7 1.2E-18 4.2E-23 106.3 4.7 62 96-159 10-78 (80)
10 3ng2_A RNF4, snurf, ring finge 99.7 2.1E-18 7.3E-23 103.2 4.1 58 97-155 6-67 (71)
11 1v87_A Deltex protein 2; ring- 99.7 4.7E-18 1.6E-22 110.8 5.6 52 100-152 24-95 (114)
12 3dpl_R Ring-box protein 1; ubi 99.7 3.4E-18 1.1E-22 109.8 4.7 50 100-150 36-100 (106)
13 2ea6_A Ring finger protein 4; 99.7 3.7E-18 1.3E-22 101.5 4.3 55 96-151 10-68 (69)
14 2ecn_A Ring finger protein 141 99.7 4.9E-18 1.7E-22 101.4 4.6 57 97-158 11-67 (70)
15 2xeu_A Ring finger protein 4; 99.7 3.9E-18 1.3E-22 99.9 2.6 53 100-153 2-58 (64)
16 2djb_A Polycomb group ring fin 99.7 2.6E-17 9E-22 98.7 5.6 60 96-158 10-69 (72)
17 2d8t_A Dactylidin, ring finger 99.7 4.6E-17 1.6E-21 97.4 4.5 54 96-153 10-63 (71)
18 4a0k_B E3 ubiquitin-protein li 99.7 7.9E-18 2.7E-22 109.5 0.2 50 100-150 47-111 (117)
19 1chc_A Equine herpes virus-1 r 99.7 6.6E-17 2.3E-21 95.8 4.1 50 99-151 3-52 (68)
20 2ct2_A Tripartite motif protei 99.6 2.1E-16 7E-21 98.3 5.6 56 96-152 10-69 (88)
21 2ysl_A Tripartite motif-contai 99.6 7.3E-16 2.5E-20 92.5 5.7 53 97-153 16-71 (73)
22 2csy_A Zinc finger protein 183 99.6 5.6E-16 1.9E-20 95.0 5.1 51 96-150 10-60 (81)
23 2ecy_A TNF receptor-associated 99.6 7.3E-16 2.5E-20 90.8 4.9 53 97-153 11-64 (66)
24 2yur_A Retinoblastoma-binding 99.6 7.9E-16 2.7E-20 92.7 4.8 56 96-154 10-67 (74)
25 4ayc_A E3 ubiquitin-protein li 99.6 7.8E-16 2.7E-20 103.5 3.9 47 101-151 53-99 (138)
26 2ct0_A Non-SMC element 1 homol 99.6 2.2E-15 7.7E-20 90.1 5.4 51 98-151 12-64 (74)
27 4ap4_A E3 ubiquitin ligase RNF 99.6 7.5E-16 2.6E-20 102.6 3.5 55 99-154 5-63 (133)
28 1t1h_A Gspef-atpub14, armadill 99.6 2E-15 6.8E-20 91.8 5.1 56 98-157 5-61 (78)
29 2ecv_A Tripartite motif-contai 99.6 2.7E-15 9.3E-20 92.4 5.0 58 97-158 15-78 (85)
30 2egp_A Tripartite motif-contai 99.6 8.8E-16 3E-20 93.5 2.5 54 97-154 8-68 (79)
31 2ecw_A Tripartite motif-contai 99.6 3.1E-15 1.1E-19 92.1 4.7 55 98-156 16-76 (85)
32 3lrq_A E3 ubiquitin-protein li 99.5 1.5E-15 5E-20 96.8 2.6 52 99-153 20-72 (100)
33 1g25_A CDK-activating kinase a 99.5 3.2E-15 1.1E-19 87.7 3.5 56 100-156 2-60 (65)
34 2y43_A E3 ubiquitin-protein li 99.5 3E-15 1E-19 95.0 3.6 51 100-153 21-71 (99)
35 2ckl_A Polycomb group ring fin 99.5 3.2E-15 1.1E-19 96.4 3.7 52 99-153 13-64 (108)
36 2ysj_A Tripartite motif-contai 99.5 9.5E-15 3.2E-19 85.2 5.2 46 96-145 15-63 (63)
37 4ap4_A E3 ubiquitin ligase RNF 99.5 3.1E-15 1.1E-19 99.5 2.9 55 98-153 69-127 (133)
38 2ecj_A Tripartite motif-contai 99.5 1.6E-14 5.5E-19 82.7 4.6 46 96-145 10-58 (58)
39 3fl2_A E3 ubiquitin-protein li 99.5 2.1E-14 7.2E-19 94.8 5.2 49 100-152 51-100 (124)
40 1jm7_A BRCA1, breast cancer ty 99.5 3.1E-14 1.1E-18 92.2 4.5 53 100-156 20-75 (112)
41 3ztg_A E3 ubiquitin-protein li 99.5 5.2E-14 1.8E-18 88.1 5.1 54 96-152 8-63 (92)
42 2ckl_B Ubiquitin ligase protei 99.5 3E-14 1E-18 98.5 4.4 51 99-152 52-103 (165)
43 2vje_A E3 ubiquitin-protein li 99.4 3.4E-14 1.2E-18 83.0 2.8 49 98-150 5-56 (64)
44 1z6u_A NP95-like ring finger p 99.4 9.5E-14 3.3E-18 94.5 5.1 50 100-153 77-127 (150)
45 3hct_A TNF receptor-associated 99.4 3.9E-14 1.3E-18 92.7 2.7 53 97-153 14-67 (118)
46 1rmd_A RAG1; V(D)J recombinati 99.4 8.9E-14 3E-18 90.7 3.8 52 100-155 22-74 (116)
47 2vje_B MDM4 protein; proto-onc 99.4 7.2E-14 2.4E-18 81.4 2.9 52 98-151 4-56 (63)
48 1bor_A Transcription factor PM 99.4 7.1E-14 2.4E-18 79.5 2.5 50 98-154 3-52 (56)
49 1e4u_A Transcriptional repress 99.4 3.6E-13 1.2E-17 81.6 5.7 56 98-154 8-65 (78)
50 3l11_A E3 ubiquitin-protein li 99.4 3.3E-14 1.1E-18 92.7 0.7 50 98-151 12-62 (115)
51 2y1n_A E3 ubiquitin-protein li 99.4 2.4E-13 8.2E-18 104.6 4.5 50 100-153 331-381 (389)
52 2kr4_A Ubiquitin conjugation f 99.4 6.3E-13 2.2E-17 82.0 4.4 55 98-156 11-65 (85)
53 2kre_A Ubiquitin conjugation f 99.3 1.3E-12 4.3E-17 83.0 5.0 56 98-157 26-81 (100)
54 3knv_A TNF receptor-associated 99.3 5.2E-13 1.8E-17 89.9 3.1 52 97-152 27-79 (141)
55 3k1l_B Fancl; UBC, ring, RWD, 99.3 3.5E-13 1.2E-17 101.3 2.3 56 97-152 304-374 (381)
56 1wgm_A Ubiquitin conjugation f 99.3 2.1E-12 7.3E-17 81.6 5.4 55 98-156 19-74 (98)
57 1jm7_B BARD1, BRCA1-associated 99.3 5.2E-13 1.8E-17 87.2 2.4 49 100-154 21-70 (117)
58 4ic3_A E3 ubiquitin-protein li 99.3 4.2E-13 1.4E-17 80.6 1.5 44 100-151 23-67 (74)
59 1vyx_A ORF K3, K3RING; zinc-bi 99.3 1.7E-12 5.7E-17 74.6 3.5 50 98-151 3-59 (60)
60 2ea5_A Cell growth regulator w 99.2 8.6E-12 3E-16 73.6 4.3 50 95-152 9-59 (68)
61 3hcs_A TNF receptor-associated 99.2 4.5E-12 1.5E-16 87.9 2.7 54 97-154 14-68 (170)
62 2ecg_A Baculoviral IAP repeat- 99.2 1.1E-11 3.8E-16 74.5 3.1 45 100-152 24-69 (75)
63 1wim_A KIAA0161 protein; ring 99.2 2E-11 6.8E-16 76.6 3.5 49 99-148 3-61 (94)
64 2yu4_A E3 SUMO-protein ligase 99.1 1.3E-11 4.4E-16 77.5 2.1 53 98-153 4-65 (94)
65 2yho_A E3 ubiquitin-protein li 99.1 1.7E-11 5.9E-16 74.4 1.8 44 100-151 17-61 (79)
66 2c2l_A CHIP, carboxy terminus 99.1 4.5E-11 1.5E-15 88.6 3.5 57 97-157 204-261 (281)
67 2f42_A STIP1 homology and U-bo 99.0 1.5E-10 5E-15 80.5 3.4 57 97-157 102-159 (179)
68 3t6p_A Baculoviral IAP repeat- 98.9 2.4E-10 8.3E-15 87.3 1.7 45 100-152 294-339 (345)
69 3htk_C E3 SUMO-protein ligase 98.9 4.8E-10 1.7E-14 81.7 2.9 56 98-156 178-237 (267)
70 2bay_A PRE-mRNA splicing facto 98.9 3.5E-10 1.2E-14 65.1 1.5 53 101-156 3-55 (61)
71 3vk6_A E3 ubiquitin-protein li 98.7 1.6E-08 5.4E-13 62.8 4.0 48 103-153 3-51 (101)
72 3nw0_A Non-structural maintena 98.3 3.4E-07 1.2E-11 66.5 4.1 50 100-152 179-230 (238)
73 2ko5_A Ring finger protein Z; 97.6 7.5E-05 2.6E-09 45.5 4.0 56 95-156 22-78 (99)
74 2lri_C Autoimmune regulator; Z 97.2 0.00044 1.5E-08 39.9 3.8 50 96-149 7-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 96.6 0.001 3.4E-08 41.5 2.4 35 100-135 2-36 (101)
76 1wil_A KIAA1045 protein; ring 96.5 0.0067 2.3E-07 36.2 5.1 38 96-135 10-47 (89)
77 2l5u_A Chromodomain-helicase-D 95.5 0.011 3.8E-07 33.3 2.8 49 96-148 6-58 (61)
78 1fp0_A KAP-1 corepressor; PHD 94.9 0.023 8E-07 34.5 3.1 58 95-156 19-80 (88)
79 2ysm_A Myeloid/lymphoid or mix 94.8 0.0099 3.4E-07 37.7 1.3 48 98-146 4-55 (111)
80 3u5n_A E3 ubiquitin-protein li 94.8 0.0073 2.5E-07 42.6 0.8 49 98-150 4-56 (207)
81 2yql_A PHD finger protein 21A; 94.7 0.0045 1.6E-07 34.3 -0.3 47 97-147 5-55 (56)
82 2yt5_A Metal-response element- 94.6 0.013 4.5E-07 33.4 1.5 52 98-149 3-62 (66)
83 2lbm_A Transcriptional regulat 94.6 0.044 1.5E-06 36.3 4.1 47 97-147 59-116 (142)
84 1mm2_A MI2-beta; PHD, zinc fin 94.5 0.0097 3.3E-07 33.5 0.8 48 98-149 6-57 (61)
85 3o36_A Transcription intermedi 94.5 0.008 2.8E-07 41.6 0.5 47 100-150 3-53 (184)
86 1f62_A Transcription factor WS 94.5 0.019 6.4E-07 31.0 1.8 44 103-147 2-49 (51)
87 2puy_A PHD finger protein 21A; 94.4 0.0047 1.6E-07 34.7 -0.7 49 100-152 4-56 (60)
88 1we9_A PHD finger family prote 94.4 0.018 6.1E-07 32.6 1.7 51 98-149 3-59 (64)
89 2k16_A Transcription initiatio 94.3 0.015 5E-07 34.2 1.2 54 97-151 14-71 (75)
90 2ku3_A Bromodomain-containing 94.1 0.022 7.6E-07 33.1 1.8 52 97-148 12-66 (71)
91 1xwh_A Autoimmune regulator; P 94.1 0.0087 3E-07 34.3 -0.1 47 98-148 5-55 (66)
92 2l43_A N-teminal domain from h 93.7 0.037 1.3E-06 33.5 2.2 55 97-151 21-78 (88)
93 3ql9_A Transcriptional regulat 93.5 0.084 2.9E-06 34.3 3.8 48 97-148 53-111 (129)
94 3v43_A Histone acetyltransfera 93.3 0.13 4.5E-06 32.5 4.5 47 100-146 4-62 (112)
95 3lqh_A Histone-lysine N-methyl 92.8 0.04 1.4E-06 38.1 1.5 48 101-148 2-63 (183)
96 3v43_A Histone acetyltransfera 92.6 0.032 1.1E-06 35.4 0.7 45 103-147 63-111 (112)
97 1wev_A Riken cDNA 1110020M19; 92.4 0.031 1.1E-06 33.9 0.5 55 100-154 15-78 (88)
98 2lv9_A Histone-lysine N-methyl 92.0 0.077 2.6E-06 32.8 2.0 46 100-147 27-75 (98)
99 2e6r_A Jumonji/ARID domain-con 91.7 0.028 9.5E-07 34.4 -0.3 51 97-148 12-66 (92)
100 2kwj_A Zinc finger protein DPF 91.6 0.15 5.1E-06 32.4 3.1 45 102-146 2-59 (114)
101 2ro1_A Transcription intermedi 91.5 0.039 1.3E-06 38.3 0.3 46 101-150 2-51 (189)
102 4gne_A Histone-lysine N-methyl 91.2 0.27 9.2E-06 30.9 3.9 50 96-151 10-65 (107)
103 2l8s_A Integrin alpha-1; trans 90.4 1.3 4.3E-05 24.1 5.5 29 25-53 8-36 (54)
104 2ri7_A Nucleosome-remodeling f 90.2 0.15 5.3E-06 34.6 2.3 50 98-148 5-59 (174)
105 2knc_A Integrin alpha-IIB; tra 89.6 1.5 5.2E-05 23.8 5.5 26 25-50 11-36 (54)
106 3shb_A E3 ubiquitin-protein li 89.0 0.057 2E-06 31.9 -0.5 45 103-148 28-77 (77)
107 3m62_A Ubiquitin conjugation f 88.7 0.33 1.1E-05 41.7 3.6 56 98-157 888-944 (968)
108 2vpb_A Hpygo1, pygopus homolog 88.2 0.51 1.7E-05 26.7 3.1 36 98-133 5-41 (65)
109 1wep_A PHF8; structural genomi 87.9 0.61 2.1E-05 27.4 3.5 50 98-149 9-64 (79)
110 2e6s_A E3 ubiquitin-protein li 87.9 0.15 5E-06 30.1 0.7 46 101-147 26-76 (77)
111 2l2t_A Receptor tyrosine-prote 87.2 0.54 1.9E-05 24.4 2.6 21 34-54 20-40 (44)
112 1wew_A DNA-binding family prot 87.0 0.33 1.1E-05 28.5 2.0 51 99-151 14-75 (78)
113 1wem_A Death associated transc 87.0 0.51 1.7E-05 27.4 2.8 48 101-150 16-72 (76)
114 2ysm_A Myeloid/lymphoid or mix 86.9 0.17 5.9E-06 31.8 0.7 47 103-150 56-106 (111)
115 2xb1_A Pygopus homolog 2, B-ce 86.8 0.11 3.8E-06 32.5 -0.3 51 102-152 4-65 (105)
116 2wwb_C SEC61BETA, protein tran 86.7 0.8 2.7E-05 28.0 3.5 36 6-41 51-86 (96)
117 1wen_A Inhibitor of growth fam 86.2 0.7 2.4E-05 26.6 3.0 47 98-149 13-66 (71)
118 3asl_A E3 ubiquitin-protein li 86.0 0.15 5.3E-06 29.4 0.1 44 103-147 20-68 (70)
119 2kwj_A Zinc finger protein DPF 85.7 0.086 2.9E-06 33.5 -1.2 48 103-151 60-111 (114)
120 1weu_A Inhibitor of growth fam 85.3 0.6 2E-05 28.4 2.5 48 98-150 33-87 (91)
121 1wfk_A Zinc finger, FYVE domai 85.0 0.93 3.2E-05 27.3 3.3 54 98-151 6-66 (88)
122 2k1a_A Integrin alpha-IIB; sin 84.6 2 6.8E-05 22.0 3.9 21 26-46 10-30 (42)
123 3t7l_A Zinc finger FYVE domain 84.3 0.87 3E-05 27.5 2.9 52 100-151 19-76 (90)
124 3o70_A PHD finger protein 13; 84.2 0.3 1E-05 27.9 0.8 50 96-147 14-66 (68)
125 2yw8_A RUN and FYVE domain-con 83.9 0.94 3.2E-05 26.8 2.9 51 100-150 18-74 (82)
126 2ks1_B Epidermal growth factor 83.9 1.6 5.5E-05 22.6 3.4 23 32-54 15-37 (44)
127 1z2q_A LM5-1; membrane protein 83.8 1.1 3.9E-05 26.5 3.3 54 100-153 20-81 (84)
128 1joc_A EEA1, early endosomal a 83.3 0.94 3.2E-05 29.1 2.9 36 100-135 68-103 (125)
129 1wee_A PHD finger family prote 83.1 0.36 1.2E-05 27.8 0.8 50 99-150 14-68 (72)
130 1y02_A CARP2, FYVE-ring finger 83.0 0.19 6.6E-06 32.2 -0.4 50 100-149 18-67 (120)
131 1vfy_A Phosphatidylinositol-3- 82.9 1.1 3.8E-05 25.8 2.9 34 102-135 12-45 (73)
132 2kgg_A Histone demethylase jar 82.4 0.49 1.7E-05 25.4 1.2 44 103-146 4-52 (52)
133 3c6w_A P28ING5, inhibitor of g 82.1 0.36 1.2E-05 26.7 0.5 44 99-147 7-57 (59)
134 3ask_A E3 ubiquitin-protein li 81.8 0.43 1.5E-05 34.0 1.0 46 102-148 175-225 (226)
135 2vnf_A ING 4, P29ING4, inhibit 81.5 0.37 1.3E-05 26.8 0.5 44 99-147 8-58 (60)
136 1x4u_A Zinc finger, FYVE domai 81.1 1.4 4.9E-05 26.1 3.0 36 100-135 13-48 (84)
137 2jwa_A Receptor tyrosine-prote 80.5 4.4 0.00015 20.9 6.1 21 31-51 18-38 (44)
138 2g6q_A Inhibitor of growth pro 80.3 0.45 1.6E-05 26.6 0.5 44 99-147 9-59 (62)
139 2jp3_A FXYD domain-containing 80.0 6.1 0.00021 22.3 5.6 38 17-54 6-45 (67)
140 2rsd_A E3 SUMO-protein ligase 79.8 0.27 9.2E-06 28.1 -0.6 48 99-147 8-64 (68)
141 1rh5_C Secbeta; protein transl 79.4 2.3 7.8E-05 23.0 3.2 37 6-42 11-47 (53)
142 2ww9_C Protein transport prote 78.6 0.99 3.4E-05 27.0 1.6 36 6-41 42-77 (87)
143 1dvp_A HRS, hepatocyte growth 78.5 1.2 4.2E-05 31.4 2.4 35 101-135 161-195 (220)
144 2gmg_A Hypothetical protein PF 78.5 0.46 1.6E-05 29.6 0.2 25 123-152 73-97 (105)
145 2d8v_A Zinc finger FYVE domain 78.1 2 6.7E-05 24.3 2.7 34 97-135 4-38 (67)
146 3zyq_A Hepatocyte growth facto 78.0 1.3 4.5E-05 31.4 2.5 51 100-150 163-221 (226)
147 1x4l_A Skeletal muscle LIM-pro 77.6 2.2 7.4E-05 24.0 3.0 41 100-150 4-46 (72)
148 1zbd_B Rabphilin-3A; G protein 77.6 1.7 5.8E-05 28.3 2.7 50 99-148 53-107 (134)
149 1wyh_A SLIM 2, skeletal muscle 77.4 2.3 7.8E-05 23.8 3.0 41 101-151 5-45 (72)
150 1weo_A Cellulose synthase, cat 77.3 9.4 0.00032 22.9 6.1 54 98-151 13-70 (93)
151 3f6q_B LIM and senescent cell 74.4 2.3 7.7E-05 23.7 2.4 43 100-152 10-52 (72)
152 2cs3_A Protein C14ORF4, MY039 74.2 6.8 0.00023 23.1 4.3 59 97-156 11-75 (93)
153 1z60_A TFIIH basal transcripti 72.9 1.9 6.5E-05 23.9 1.7 42 102-145 16-58 (59)
154 2jny_A Uncharacterized BCR; st 72.8 0.55 1.9E-05 26.8 -0.5 20 133-152 4-23 (67)
155 2co8_A NEDD9 interacting prote 72.8 5 0.00017 23.3 3.8 43 98-151 12-54 (82)
156 2cu8_A Cysteine-rich protein 2 72.6 2.1 7.2E-05 24.4 2.0 42 99-151 7-48 (76)
157 1iml_A CRIP, cysteine rich int 72.6 1.2 4.1E-05 25.5 0.9 40 102-146 28-68 (76)
158 2pk7_A Uncharacterized protein 72.4 0.61 2.1E-05 26.8 -0.4 20 133-152 2-21 (69)
159 3a1b_A DNA (cytosine-5)-methyl 70.9 3.7 0.00013 27.5 3.1 46 97-146 75-132 (159)
160 2a20_A Regulating synaptic mem 70.3 0.49 1.7E-05 26.1 -1.1 50 97-147 5-59 (62)
161 3mjh_B Early endosome antigen 69.4 1.1 3.9E-05 21.8 0.3 16 100-115 4-19 (34)
162 3i2d_A E3 SUMO-protein ligase 69.3 4.4 0.00015 31.0 3.6 48 101-151 249-300 (371)
163 2d8x_A Protein pinch; LIM doma 69.3 4.3 0.00015 22.6 2.8 41 100-152 4-44 (70)
164 3kqi_A GRC5, PHD finger protei 68.4 2.1 7.2E-05 24.7 1.4 47 100-148 9-61 (75)
165 2pv0_B DNA (cytosine-5)-methyl 67.9 6.7 0.00023 30.2 4.4 47 97-147 89-147 (386)
166 1x4i_A Inhibitor of growth pro 67.9 3.6 0.00012 23.4 2.3 45 100-149 5-56 (70)
167 3mpx_A FYVE, rhogef and PH dom 67.7 1.1 3.8E-05 34.7 0.0 50 100-149 374-430 (434)
168 4fo9_A E3 SUMO-protein ligase 67.4 5 0.00017 30.6 3.5 49 101-152 215-267 (360)
169 2l6w_A Beta-type platelet-deri 69.5 1.2 4.3E-05 22.3 0.0 23 28-50 9-31 (39)
170 2k21_A Potassium voltage-gated 65.4 17 0.0006 23.3 5.2 29 26-54 53-81 (138)
171 1x62_A C-terminal LIM domain p 64.9 6.5 0.00022 22.5 3.1 40 99-150 13-52 (79)
172 2rgt_A Fusion of LIM/homeobox 64.7 5.1 0.00018 26.7 2.9 39 102-150 66-104 (169)
173 2jo1_A Phospholemman; FXYD1, N 64.7 15 0.0005 21.0 4.2 26 29-54 17-44 (72)
174 2jr6_A UPF0434 protein NMA0874 64.5 0.59 2E-05 26.7 -1.6 19 134-152 3-21 (68)
175 1x68_A FHL5 protein; four-and- 64.5 7.2 0.00025 22.1 3.2 40 101-150 5-46 (76)
176 2jmi_A Protein YNG1, ING1 homo 64.3 2.2 7.5E-05 25.8 0.9 46 97-147 22-75 (90)
177 1a7i_A QCRP2 (LIM1); LIM domai 64.2 2.1 7.3E-05 24.7 0.8 42 100-152 6-47 (81)
178 2kpi_A Uncharacterized protein 63.4 0.54 1.8E-05 25.8 -1.8 20 133-152 4-23 (56)
179 1pi7_A VPU protein, U ORF prot 63.4 12 0.00041 18.4 4.3 16 33-48 10-25 (36)
180 2jvx_A NF-kappa-B essential mo 62.9 1.7 5.7E-05 20.2 0.1 12 139-150 3-14 (28)
181 2zxe_G FXYD10, phospholemman-l 62.6 6.1 0.00021 22.7 2.4 30 19-48 10-39 (74)
182 3o7a_A PHD finger protein 13 v 61.5 1.8 6.1E-05 23.1 0.1 41 106-147 8-51 (52)
183 1zfo_A LAsp-1; LIM domain, zin 61.2 3.8 0.00013 19.2 1.2 28 102-132 4-31 (31)
184 2zet_C Melanophilin; complex, 61.0 6.4 0.00022 26.2 2.8 47 99-147 66-116 (153)
185 2js4_A UPF0434 protein BB2007; 60.5 0.68 2.3E-05 26.7 -1.8 19 134-152 3-21 (70)
186 2rdd_B UPF0092 membrane protei 60.2 7.8 0.00027 19.0 2.4 16 39-54 12-27 (37)
187 2jmo_A Parkin; IBR, E3 ligase, 60.2 0.67 2.3E-05 27.3 -2.0 14 122-135 55-68 (80)
188 2hf1_A Tetraacyldisaccharide-1 59.9 0.59 2E-05 26.7 -2.1 17 135-151 4-20 (68)
189 1wd2_A Ariadne-1 protein homol 59.5 4.1 0.00014 22.5 1.4 16 140-155 7-22 (60)
190 1yuz_A Nigerythrin; rubrythrin 59.0 5.4 0.00018 27.8 2.2 25 117-148 171-195 (202)
191 2cur_A Skeletal muscle LIM-pro 56.8 10 0.00035 20.8 2.9 39 100-150 4-42 (69)
192 1x61_A Thyroid receptor intera 55.4 9.5 0.00033 21.1 2.6 39 101-149 5-43 (72)
193 3lb6_C IL-13, interleukin-13 r 54.8 3.7 0.00013 31.1 0.9 12 3-14 323-334 (380)
194 1g47_A Pinch protein; LIM doma 54.1 8.3 0.00028 21.7 2.2 44 99-152 9-52 (77)
195 2lcq_A Putative toxin VAPC6; P 54.0 3 0.0001 27.9 0.2 23 122-150 137-159 (165)
196 3pwf_A Rubrerythrin; non heme 53.8 8.7 0.0003 25.9 2.5 26 116-148 137-162 (170)
197 2k9j_B Integrin beta-3; transm 52.4 22 0.00076 18.1 3.8 14 28-41 10-23 (43)
198 3fyb_A Protein of unknown func 51.7 5.8 0.0002 24.2 1.2 11 127-137 42-52 (104)
199 2o35_A Hypothetical protein DU 51.7 5.9 0.0002 24.3 1.2 11 127-137 43-53 (105)
200 1x4k_A Skeletal muscle LIM-pro 51.6 10 0.00035 21.0 2.3 41 101-151 5-45 (72)
201 2xjy_A Rhombotin-2; oncoprotei 51.5 14 0.00047 23.3 3.1 27 124-150 51-77 (131)
202 2dj7_A Actin-binding LIM prote 50.9 16 0.00055 20.9 3.1 42 98-150 12-53 (80)
203 1nyp_A Pinch protein; LIM doma 50.8 7 0.00024 21.3 1.4 39 101-151 5-43 (66)
204 2jtn_A LIM domain-binding prot 50.7 7.9 0.00027 26.1 2.0 44 102-151 88-131 (182)
205 2ct7_A Ring finger protein 31; 50.6 1.4 4.7E-05 26.3 -1.7 26 119-144 45-72 (86)
206 2cor_A Pinch protein; LIM doma 48.8 22 0.00076 20.2 3.5 42 98-151 12-53 (79)
207 2dar_A PDZ and LIM domain prot 48.0 17 0.00058 21.2 3.0 41 99-151 23-63 (90)
208 2cuq_A Four and A half LIM dom 47.1 12 0.00043 21.1 2.2 38 101-150 15-52 (80)
209 1x63_A Skeletal muscle LIM-pro 45.3 14 0.00046 21.1 2.2 41 101-151 15-55 (82)
210 1m3v_A FLIN4, fusion of the LI 45.0 22 0.00074 22.2 3.3 48 102-151 33-81 (122)
211 2egq_A FHL1 protein; LIM domai 44.8 21 0.00071 20.0 2.9 41 101-152 15-59 (77)
212 3kv5_D JMJC domain-containing 44.6 5.8 0.0002 31.5 0.5 48 99-148 35-88 (488)
213 2l4z_A DNA endonuclease RBBP8, 44.4 23 0.0008 22.2 3.4 39 101-150 61-99 (123)
214 2cup_A Skeletal muscle LIM-pro 43.7 15 0.00052 21.8 2.3 30 101-132 66-95 (101)
215 1wig_A KIAA1808 protein; LIM d 42.9 38 0.0013 18.8 3.9 28 101-132 5-32 (73)
216 1lko_A Rubrerythrin all-iron(I 42.6 12 0.0004 25.7 1.8 25 118-148 156-180 (191)
217 3arc_L Photosystem II reaction 42.0 31 0.0011 16.7 4.2 26 16-41 5-30 (37)
218 1afo_A Glycophorin A; integral 40.7 35 0.0012 17.0 4.0 20 27-46 12-31 (40)
219 1x64_A Alpha-actinin-2 associa 40.6 16 0.00054 21.3 2.0 41 99-151 23-63 (89)
220 1rut_X Flinc4, fusion protein 40.4 18 0.00062 24.4 2.5 27 124-150 54-80 (188)
221 2d8y_A Eplin protein; LIM doma 40.2 20 0.00068 20.9 2.4 41 100-151 14-54 (91)
222 2kdx_A HYPA, hydrogenase/ureas 39.5 9.9 0.00034 23.9 1.0 22 122-149 78-100 (119)
223 2iyb_E Testin, TESS, TES; LIM 38.7 22 0.00075 19.2 2.3 38 102-150 3-43 (65)
224 2l3k_A Rhombotin-2, linker, LI 38.5 14 0.00047 23.2 1.5 34 102-137 37-70 (123)
225 2l9u_A Receptor tyrosine-prote 38.2 36 0.0012 16.4 4.3 6 49-54 29-34 (40)
226 1loi_A Cyclic 3',5'-AMP specif 38.0 1.5 5.1E-05 19.2 -2.1 12 126-137 6-17 (26)
227 2jne_A Hypothetical protein YF 38.0 7.6 0.00026 23.7 0.2 41 101-150 32-72 (101)
228 1l8d_A DNA double-strand break 37.8 8 0.00027 23.8 0.3 12 139-150 47-58 (112)
229 3vhs_A ATPase wrnip1; zinc fin 37.8 8.3 0.00028 17.3 0.3 9 141-149 8-16 (29)
230 4ayb_P DNA-directed RNA polyme 36.3 34 0.0012 17.8 2.5 19 139-157 23-41 (48)
231 1b8t_A Protein (CRP1); LIM dom 35.0 31 0.0011 23.3 3.0 39 101-150 115-153 (192)
232 2fiy_A Protein FDHE homolog; F 34.3 3 0.0001 31.1 -2.4 48 99-148 180-231 (309)
233 3arc_H Photosystem II reaction 32.9 66 0.0022 17.9 4.6 12 26-37 27-38 (65)
234 2dlo_A Thyroid receptor-intera 32.6 19 0.00064 20.5 1.4 40 100-151 14-53 (81)
235 2d8z_A Four and A half LIM dom 31.1 30 0.001 18.8 2.1 39 100-150 4-42 (70)
236 1x3h_A Leupaxin; paxillin fami 30.9 22 0.00075 20.0 1.5 40 101-152 15-54 (80)
237 2jrp_A Putative cytoplasmic pr 30.5 18 0.00061 21.3 1.0 11 103-113 4-14 (81)
238 2xqn_T Testin, TESS; metal-bin 29.5 44 0.0015 20.6 2.9 27 123-151 49-75 (126)
239 2i50_A Ubiquitin carboxyl-term 29.1 12 0.00041 23.9 0.0 26 123-148 7-37 (126)
240 1r79_A Diacylglycerol kinase, 27.6 95 0.0033 18.1 3.9 40 101-144 38-80 (84)
241 1q55_A EP-cadherin, C-cadherin 27.4 13 0.00044 31.8 0.0 23 30-52 707-729 (880)
242 2ehe_A Four and A half LIM dom 26.3 35 0.0012 19.2 1.8 40 101-150 15-54 (82)
243 2lx0_A Membrane fusion protein 25.3 58 0.002 14.8 3.5 20 30-49 8-27 (32)
244 3bbo_3 Ribosomal protein L33; 24.8 30 0.001 19.4 1.2 15 139-153 49-63 (66)
245 4rxn_A Rubredoxin; electron tr 24.7 33 0.0011 18.4 1.3 39 103-148 5-45 (54)
246 2jz8_A Uncharacterized protein 24.0 41 0.0014 20.0 1.7 20 140-159 49-68 (87)
247 1dl6_A Transcription factor II 24.0 19 0.00066 19.5 0.3 8 140-147 12-19 (58)
248 3c5k_A HD6, histone deacetylas 24.0 57 0.002 20.1 2.5 24 101-128 24-47 (109)
249 3i1m_R 30S ribosomal protein S 23.6 20 0.00068 20.7 0.3 15 136-150 5-19 (75)
250 1lv3_A Hypothetical protein YA 22.3 22 0.00076 20.1 0.3 11 140-150 10-20 (68)
251 2lq6_A Bromodomain-containing 22.1 37 0.0013 20.0 1.3 33 101-134 17-50 (87)
252 2akl_A PHNA-like protein PA012 21.4 35 0.0012 22.0 1.2 27 101-127 27-54 (138)
253 2y69_L Cytochrome C oxidase su 20.9 1.2E+02 0.004 16.7 5.8 33 21-53 29-61 (63)
254 1v6g_A Actin binding LIM prote 20.8 46 0.0016 18.7 1.6 27 102-132 16-42 (81)
255 2csz_A Synaptotagmin-like prot 20.6 54 0.0019 18.9 1.8 34 98-131 22-56 (76)
256 6rxn_A Rubredoxin; electron tr 20.6 29 0.001 17.9 0.6 9 140-148 31-39 (46)
257 4bbq_A Lysine-specific demethy 20.6 31 0.0011 21.2 0.8 44 104-147 62-113 (117)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.88 E-value=6.5e-23 Score=128.90 Aligned_cols=79 Identities=29% Similarity=0.646 Sum_probs=69.0
Q ss_pred HhhcCCCCHHHHhcCCcEeeecCCCCCCCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccc
Q 031354 69 QALTRGLDLTTINTLPIVLHRSEKSTKDDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNS 148 (161)
Q Consensus 69 ~~~~~~~~~~~i~~lp~~~~~~~~~~~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 148 (161)
....++++++.++.||.+.+.... .....+..|+||+++|.+++.++.+| |||.||..||++|+..+.+||+||..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~---~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDH---GAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTC---SSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CcCCCCCCHHHHHhCCCeeecccc---cccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 345678999999999999877544 23456789999999999999999999 99999999999999999999999998
Q ss_pred ccC
Q 031354 149 LRV 151 (161)
Q Consensus 149 l~~ 151 (161)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.9e-22 Score=120.95 Aligned_cols=70 Identities=33% Similarity=0.820 Sum_probs=59.6
Q ss_pred HHhcCCcEeeecCCCCCCCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 79 TINTLPIVLHRSEKSTKDDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 79 ~i~~lp~~~~~~~~~~~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
.++.+|.+++.... ...+...|+||+++|.+++.++.+| |||+||..||.+|++.+.+||+||+++...+
T Consensus 5 ~i~~lp~~~~~~~~----~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN----HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CCSSCCCEEBCSSS----CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred hHhhCCcEEecCcc----ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 45678888776433 3456789999999999999999999 9999999999999999999999999987654
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-20 Score=110.72 Aligned_cols=59 Identities=37% Similarity=0.986 Sum_probs=52.2
Q ss_pred CCCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCC
Q 031354 95 KDDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSA 154 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 154 (161)
.........|+||++.|..++.++.+| |||+||..||.+|+..+.+||+||..+....+
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 344566789999999999988999999 99999999999999998999999999977654
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.81 E-value=1.3e-20 Score=107.43 Aligned_cols=52 Identities=46% Similarity=1.188 Sum_probs=47.5
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
.++.+|+||+++|.+++.+..+|.|||.||.+||.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567899999999999988888779999999999999999999999999875
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.1e-20 Score=111.67 Aligned_cols=61 Identities=31% Similarity=0.777 Sum_probs=53.8
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~ 157 (161)
.....+..|+||+++|.+++.++++| |||+||..||.+|++.+.+||+||.++.....++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCCC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccccCC
Confidence 34456789999999999999999999 99999999999999988999999999987766554
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=5.4e-20 Score=112.23 Aligned_cols=62 Identities=32% Similarity=0.790 Sum_probs=54.5
Q ss_pred CCCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCCC
Q 031354 95 KDDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~ 157 (161)
.........|+||+++|.+++.++.++ |||+||..||.+|++.+.+||+||..+......++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 344566789999999999999999999 99999999999999999999999999987766544
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.1e-20 Score=112.50 Aligned_cols=53 Identities=32% Similarity=0.764 Sum_probs=43.5
Q ss_pred CCCccccccccccC-----------CCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 100 EESECCICLGVFED-----------GDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~-----------~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
+++.|+||+++|.+ ++.+++++.|||+||.+||++|+..+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 46678888888854 455666656999999999999999999999999997643
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.76 E-value=5.3e-19 Score=100.66 Aligned_cols=51 Identities=31% Similarity=0.670 Sum_probs=44.6
Q ss_pred CCCCccccccccccCC-CeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 99 EEESECCICLGVFEDG-DKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~-~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
.+...|+||+++|.++ +.+..++ |||+||..||.+|++.+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4667899999999664 4577888 9999999999999998899999999874
No 9
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=106.32 Aligned_cols=62 Identities=24% Similarity=0.626 Sum_probs=52.2
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCC-----CccchhhHHHHHcCC--CCCccccccccCCCCCCCCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCR-----HCYHCECVDAWLSAR--SSCPLCRNSLRVDSALPSIT 159 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~~~~~~~ 159 (161)
....++..|+||+++|.+++.+ ++| |+ |.||.+||++|+..+ .+||+||.++.....+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~~ 78 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGPS 78 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCCC
Confidence 4455678999999999988877 689 96 999999999999865 58999999999887776653
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.73 E-value=2.1e-18 Score=103.16 Aligned_cols=58 Identities=21% Similarity=0.578 Sum_probs=49.0
Q ss_pred CCCCCCccccccccccC----CCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCC
Q 031354 97 DKEEESECCICLGVFED----GDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSAL 155 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~----~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 155 (161)
...+...|+||++.|.+ ++.+..++ |||.||..||.+|+..+.+||+||.++...+-.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 34567899999999876 35567888 999999999999999999999999999866543
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.72 E-value=4.7e-18 Score=110.84 Aligned_cols=52 Identities=23% Similarity=0.594 Sum_probs=43.1
Q ss_pred CCCccccccccccCCC---------------eeeecCCCCCccchhhHHHHH-----cCCCCCccccccccCC
Q 031354 100 EESECCICLGVFEDGD---------------KVKILPKCRHCYHCECVDAWL-----SARSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~---------------~v~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~l~~~ 152 (161)
.++.|+|||++|.+.. .++.++ |||+||..||++|+ ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4569999999997643 445788 99999999999999 4567899999998644
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.72 E-value=3.4e-18 Score=109.80 Aligned_cols=50 Identities=30% Similarity=0.662 Sum_probs=43.4
Q ss_pred CCCccccccccccCC---------------CeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 100 EESECCICLGVFEDG---------------DKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 100 ~~~~CaICL~~f~~~---------------~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
+++.|+||+++|.+. ..++.++ |+|.||..||++||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 467899999999864 1366788 9999999999999999999999999854
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-18 Score=101.47 Aligned_cols=55 Identities=20% Similarity=0.541 Sum_probs=46.6
Q ss_pred CCCCCCCccccccccccCC----CeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 96 DDKEEESECCICLGVFEDG----DKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~----~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
....+...|+||++.|.+. ..+..++ |||+||..||++|+..+.+||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4456678999999999863 4457788 99999999999999998999999998754
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.9e-18 Score=101.36 Aligned_cols=57 Identities=33% Similarity=0.848 Sum_probs=49.0
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPSI 158 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~ 158 (161)
...+...|+||++.+.+ ..+| |||.||..||.+|+..+.+||+||.++...+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 67 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGP 67 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCC
T ss_pred cCCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccC
Confidence 34567899999999876 5788 999999999999999999999999999877765544
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.70 E-value=3.9e-18 Score=99.90 Aligned_cols=53 Identities=21% Similarity=0.585 Sum_probs=45.9
Q ss_pred CCCccccccccccCC----CeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 100 EESECCICLGVFEDG----DKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 100 ~~~~CaICL~~f~~~----~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
+..+|+||+++|.+. +.+..++ |||.||..|+.+|+..+.+||+||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 467899999999753 4557788 9999999999999999999999999987654
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=98.73 Aligned_cols=60 Identities=22% Similarity=0.461 Sum_probs=50.1
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCCCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPSI 158 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~ 158 (161)
+...+...|+||++.|.+ .+.+++ |||.||..||.+|+..+.+||+||.++...+..+.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 10 SELTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred hhcCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 344567799999999875 444457 999999999999999889999999999988777654
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.6e-17 Score=97.41 Aligned_cols=54 Identities=30% Similarity=0.574 Sum_probs=45.6
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
....+...|+||++.+.+ ...+| |||+||..||.+|+..+.+||+||..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp CSSSSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred ccCCCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 344567799999999865 45678 9999999999999999999999999987543
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.66 E-value=7.9e-18 Score=109.54 Aligned_cols=50 Identities=30% Similarity=0.701 Sum_probs=1.0
Q ss_pred CCCccccccccccCC-------------C--eeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 100 EESECCICLGVFEDG-------------D--KVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 100 ~~~~CaICL~~f~~~-------------~--~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
.++.|+||+++|.+. + .+..++ |+|.||..||++||..+.+||+||++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457999999999752 2 233356 9999999999999999999999999864
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.65 E-value=6.6e-17 Score=95.83 Aligned_cols=50 Identities=28% Similarity=0.763 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
..+..|+||++.+.+ .+..+| |||.||..|+.+|+..+.+||+||.++..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456789999999864 356788 99999999999999988999999999864
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=98.27 Aligned_cols=56 Identities=30% Similarity=0.694 Sum_probs=47.4
Q ss_pred CCCCCCCccccccccccCCCe-eeecCCCCCccchhhHHHHHcCC---CCCccccccccCC
Q 031354 96 DDKEEESECCICLGVFEDGDK-VKILPKCRHCYHCECVDAWLSAR---SSCPLCRNSLRVD 152 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~-v~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~~~ 152 (161)
....+...|+||++.|.+++. ...++ |||.||..|+.+|+..+ .+||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345567799999999998764 66788 99999999999999875 7899999988654
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.3e-16 Score=92.51 Aligned_cols=53 Identities=28% Similarity=0.668 Sum_probs=43.7
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHc---CCCCCccccccccCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS---ARSSCPLCRNSLRVDS 153 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~l~~~~ 153 (161)
...+...|+||++.|.+ ...++ |||.||..||.+|++ .+.+||+||.++..++
T Consensus 16 ~~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred hCccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34567799999999875 44568 999999999999997 4568999999987653
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.6e-16 Score=94.95 Aligned_cols=51 Identities=24% Similarity=0.597 Sum_probs=43.6
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
........|+||++.|.+ ..+++ |||.||..||.+|+..+.+||+||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 344556799999999965 34688 9999999999999998899999999985
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=7.3e-16 Score=90.80 Aligned_cols=53 Identities=26% Similarity=0.506 Sum_probs=43.2
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHc-CCCCCccccccccCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS-ARSSCPLCRNSLRVDS 153 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~ 153 (161)
...+...|+||++.+.+. + .++ |||.||..||.+|+. .+.+||+||.++..++
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~-~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP--K-QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCCCEECTTTCCEESSC--C-CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCcCCCCCCCChHhcCe--e-ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 345677999999998753 2 368 999999999999995 5678999999987653
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.60 E-value=7.9e-16 Score=92.71 Aligned_cols=56 Identities=30% Similarity=0.649 Sum_probs=44.2
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC--CCCccccccccCCCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR--SSCPLCRNSLRVDSA 154 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~~ 154 (161)
+...+...|+||++.|.+ .+ ++|.|||.||..||..|+..+ .+||+||.++...+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~--p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTD--AV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CCSCGGGSCSSSCCCCTT--CE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred ccCCCCCCCcCCChHHhC--Ce-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 344567799999999975 33 466699999999999999865 689999998655443
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.58 E-value=7.8e-16 Score=103.53 Aligned_cols=47 Identities=30% Similarity=0.918 Sum_probs=41.7
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
+..|+||++.|.+ ..++| |||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999999975 45788 99999999999999999999999999864
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=90.05 Aligned_cols=51 Identities=22% Similarity=0.588 Sum_probs=43.8
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC--CCCccccccccC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR--SSCPLCRNSLRV 151 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~ 151 (161)
.....+|+||.+.+..++... . |+|.||..||.+||+.+ .+||+||++...
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 445689999999999876664 5 99999999999999877 789999998763
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.58 E-value=7.5e-16 Score=102.60 Aligned_cols=55 Identities=20% Similarity=0.559 Sum_probs=47.1
Q ss_pred CCCCccccccccccCC----CeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCC
Q 031354 99 EEESECCICLGVFEDG----DKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSA 154 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~----~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 154 (161)
.+...|+||++.|.+. +.+..++ |||.||..||.+|++.+.+||+||..+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 4567899999999763 5557888 99999999999999999999999999876543
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.58 E-value=2e-15 Score=91.77 Aligned_cols=56 Identities=25% Similarity=0.487 Sum_probs=46.3
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccccCCCCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~~~ 157 (161)
..+...|+||++.|.+ -.+++ |||.||..||.+|+.. +.+||+||.++...+..|.
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred CcccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 4567899999999875 34568 9999999999999987 7889999999987655444
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=92.41 Aligned_cols=58 Identities=33% Similarity=0.648 Sum_probs=47.1
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC------CCCCccccccccCCCCCCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA------RSSCPLCRNSLRVDSALPSI 158 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~~~~~~~~ 158 (161)
...+...|+||++.|.+ ...++ |||.||..|+..|+.. ...||+||..+...+..+..
T Consensus 15 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred HccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence 34566799999999875 34578 9999999999999987 67899999999876555443
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.56 E-value=8.8e-16 Score=93.50 Aligned_cols=54 Identities=30% Similarity=0.618 Sum_probs=44.6
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-------CCCCccccccccCCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-------RSSCPLCRNSLRVDSA 154 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~l~~~~~ 154 (161)
...+...|+||++.|.+ ...+| |||.||..||.+|+.. ..+||+||.++...+.
T Consensus 8 ~~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred hcccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 34567899999999975 34578 9999999999999986 5689999999876543
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.1e-15 Score=92.13 Aligned_cols=55 Identities=25% Similarity=0.650 Sum_probs=45.3
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC------CCCCccccccccCCCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA------RSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~~~~~~ 156 (161)
..+...|+||++.|.+ -..++ |||.||..||..|+.. ...||+||..+...+..+
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp CCTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEE
T ss_pred CccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCc
Confidence 4567799999999875 23688 9999999999999987 678999999988664443
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.55 E-value=1.5e-15 Score=96.76 Aligned_cols=52 Identities=27% Similarity=0.698 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC-CCCccccccccCCC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR-SSCPLCRNSLRVDS 153 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~~ 153 (161)
.+...|+||++.|.+ .+..++ |||.||..||.+|+..+ .+||+||.++...+
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 345689999999974 444488 99999999999999977 69999999986544
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.54 E-value=3.2e-15 Score=87.74 Aligned_cols=56 Identities=21% Similarity=0.463 Sum_probs=43.9
Q ss_pred CCCccccccc-cccCCCee-eecCCCCCccchhhHHHHHcC-CCCCccccccccCCCCCC
Q 031354 100 EESECCICLG-VFEDGDKV-KILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 100 ~~~~CaICL~-~f~~~~~v-~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~~ 156 (161)
++..|+||++ .|.+.... ..++ |||.||..||.+|+.. +.+||+||.++...+-.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 3568999999 77765433 4577 9999999999999765 467999999997765443
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.54 E-value=3e-15 Score=95.05 Aligned_cols=51 Identities=27% Similarity=0.648 Sum_probs=43.1
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
+...|+||++.|.+ .+..++ |||.||..||.+|+..+.+||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 45689999999975 444447 9999999999999999899999999987643
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.54 E-value=3.2e-15 Score=96.42 Aligned_cols=52 Identities=25% Similarity=0.670 Sum_probs=44.5
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
.+...|+||++.|.+ .+..++ |||.||..||..|+..+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKTR 64 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSSC
T ss_pred CCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccccC
Confidence 456789999999864 555458 9999999999999999899999999988654
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=9.5e-15 Score=85.16 Aligned_cols=46 Identities=28% Similarity=0.688 Sum_probs=38.1
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHc---CCCCCccc
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS---ARSSCPLC 145 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 145 (161)
+...+...|+||++.|.+ ..+++ |||.||..||.+|++ .+.+||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 344567899999999985 44568 999999999999998 45689998
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.52 E-value=3.1e-15 Score=99.54 Aligned_cols=55 Identities=22% Similarity=0.632 Sum_probs=46.7
Q ss_pred CCCCCccccccccccC----CCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCC
Q 031354 98 KEEESECCICLGVFED----GDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDS 153 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~----~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 153 (161)
..+...|+||++.|.+ +.....++ |||+||..||++|+..+.+||+||.++..+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3456789999999976 33446778 9999999999999999999999999997654
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=82.70 Aligned_cols=46 Identities=26% Similarity=0.849 Sum_probs=37.5
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHc---CCCCCccc
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS---ARSSCPLC 145 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 145 (161)
....+...|+||++.|.+. ..++ |||.||..||.+|+. .+.+||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3345677999999999763 4578 999999999999954 56789998
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=94.78 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=41.6
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCC-CCccccccccCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARS-SCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 152 (161)
+...|+||++.|.+ ...+| |||.||..||..|+..+. +||+||.++...
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 100 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGRS 100 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCCC
Confidence 45689999999985 44578 999999999999998554 899999999773
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.47 E-value=3.1e-14 Score=92.20 Aligned_cols=53 Identities=28% Similarity=0.608 Sum_probs=43.0
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCC---CCccccccccCCCCCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARS---SCPLCRNSLRVDSALP 156 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~l~~~~~~~ 156 (161)
....|+||++.|.+ ...+| |||.||..||..|+..+. +||+||.++...+..+
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 34589999999875 33478 999999999999998654 8999999988765443
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.47 E-value=5.2e-14 Score=88.11 Aligned_cols=54 Identities=28% Similarity=0.624 Sum_probs=42.7
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC--CCCccccccccCC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR--SSCPLCRNSLRVD 152 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~ 152 (161)
....+...|+||++.|.+ . .++|.|||.||..||.+|+..+ .+||+||.++...
T Consensus 8 ~~~~~~~~C~IC~~~~~~--p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTD--A-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63 (92)
T ss_dssp CCCCTTTEETTTTEECSS--C-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT
T ss_pred ccCCcCCCCCCCChhhcC--c-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc
Confidence 345567899999999975 3 3566599999999999999743 5899999997433
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.47 E-value=3e-14 Score=98.48 Aligned_cols=51 Identities=27% Similarity=0.677 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccccCC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVD 152 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 152 (161)
.....|+||++.|.+ .+..++ |||.||..||.+|+.. +.+||+||.++...
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 345699999999975 555558 9999999999999997 77899999998543
No 43
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.44 E-value=3.4e-14 Score=83.05 Aligned_cols=49 Identities=22% Similarity=0.510 Sum_probs=41.1
Q ss_pred CCCCCccccccccccCCCeeeec--CCCCCc-cchhhHHHHHcCCCCCcccccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKIL--PKCRHC-YHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~l--p~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
..++.+|+||++++.+ ...+ | |||+ |+.+|+..|...+..||+||+++.
T Consensus 5 ~~~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3466789999998765 3344 9 9999 899999999998889999999885
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.44 E-value=9.5e-14 Score=94.50 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=42.5
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCC-CCccccccccCCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARS-SCPLCRNSLRVDS 153 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~~ 153 (161)
+...|+||++.|.+ ..++| |||.||..||..|+.... +||+||.++....
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCCC
Confidence 45689999999875 34578 999999999999998754 8999999998763
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.43 E-value=3.9e-14 Score=92.71 Aligned_cols=53 Identities=25% Similarity=0.506 Sum_probs=44.2
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCC-CCccccccccCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARS-SCPLCRNSLRVDS 153 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~~ 153 (161)
...+...|+||++.|.+ -..++ |||.||..||.+|+..+. +||+||.++....
T Consensus 14 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 44566799999999875 34578 999999999999998764 8999999987654
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.42 E-value=8.9e-14 Score=90.70 Aligned_cols=52 Identities=25% Similarity=0.483 Sum_probs=43.4
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccccCCCCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVDSAL 155 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~ 155 (161)
+...|+||++.|.+ ...++ |||.||..||.+|+.. +.+||+||.++...+..
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 45689999999865 33478 9999999999999986 67899999998876543
No 47
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.42 E-value=7.2e-14 Score=81.41 Aligned_cols=52 Identities=21% Similarity=0.475 Sum_probs=41.5
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCc-cchhhHHHHHcCCCCCccccccccC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
......|.||++.+.+. .+..+| |||+ |+..|+.+|.+.+..||+||+++..
T Consensus 4 ~~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 45567899999986541 122348 9998 9999999999888899999999853
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.41 E-value=7.1e-14 Score=79.54 Aligned_cols=50 Identities=24% Similarity=0.550 Sum_probs=41.4
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSA 154 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 154 (161)
..+...|+||++.|.+ ..++| |||.||..|+..| ...||+||..+.....
T Consensus 3 e~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp SCCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred cccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 3466789999999986 46789 9999999999884 5679999999876544
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.41 E-value=3.6e-13 Score=81.61 Aligned_cols=56 Identities=27% Similarity=0.442 Sum_probs=43.5
Q ss_pred CCCCCccccccccccCCCe-eeecCCCCCccchhhHHHHHcC-CCCCccccccccCCCC
Q 031354 98 KEEESECCICLGVFEDGDK-VKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVDSA 154 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~-v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~ 154 (161)
..++..|+||++.+...+. +..++ |||.||..|+..|+.. ...||+||.++.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4567799999999865433 22356 9999999999999853 5689999999976543
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.40 E-value=3.3e-14 Score=92.65 Aligned_cols=50 Identities=26% Similarity=0.690 Sum_probs=41.9
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccccC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRV 151 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 151 (161)
..++..|+||++.|.+ ...++ |||.||..||.+|+.. +.+||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3456789999999875 44568 9999999999999986 6789999999863
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.38 E-value=2.4e-13 Score=104.63 Aligned_cols=50 Identities=32% Similarity=0.722 Sum_probs=43.4
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHc-CCCCCccccccccCCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS-ARSSCPLCRNSLRVDS 153 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~ 153 (161)
....|+||++.+.+ ...+| |||.||..|+..|+. .+.+||+||.++....
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 34799999999865 66788 999999999999998 7889999999987653
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.35 E-value=6.3e-13 Score=81.97 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=46.6
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 156 (161)
......|+||++-|.+ -.+++ |||.|+..||.+|+..+.+||+||.++......|
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CchheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence 4467899999999876 44688 9999999999999998899999999987665444
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.33 E-value=1.3e-12 Score=82.95 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=47.2
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~ 157 (161)
......|+||++-|.+ -.++| |||.|+..||.+|+..+.+||+||.++......|.
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred CcHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence 4557799999999875 44688 99999999999999988999999999987655443
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.33 E-value=5.2e-13 Score=89.92 Aligned_cols=52 Identities=23% Similarity=0.446 Sum_probs=42.4
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCC-CCccccccccCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARS-SCPLCRNSLRVD 152 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 152 (161)
...+...|+||++.|.+. ..++ |||.||..||.+|+.... +||+||.++...
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 345677999999998753 4578 999999999999998654 899999987543
No 55
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.32 E-value=3.5e-13 Score=101.32 Aligned_cols=56 Identities=30% Similarity=0.726 Sum_probs=43.2
Q ss_pred CCCCCCccccccccccCCCeee----ecCCCCCccchhhHHHHHcCC-----------CCCccccccccCC
Q 031354 97 DKEEESECCICLGVFEDGDKVK----ILPKCRHCYHCECVDAWLSAR-----------SSCPLCRNSLRVD 152 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~----~lp~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~l~~~ 152 (161)
......+|+||++.+.++..+- ..+.|||.||..||.+||+.. .+||+||.++...
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4567889999999998844332 223499999999999999742 4699999998654
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.32 E-value=2.1e-12 Score=81.61 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=46.5
Q ss_pred CCCCCccccccccccCCCeeeecCCCC-CccchhhHHHHHcCCCCCccccccccCCCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCR-HCYHCECVDAWLSARSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 156 (161)
...+..|+||++-|.+ -.+++ || |.|+..||.+|+..+.+||+||.++......|
T Consensus 19 ~p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred CcHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceE
Confidence 3456799999999875 44678 99 99999999999998889999999998765544
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=5.2e-13 Score=87.18 Aligned_cols=49 Identities=20% Similarity=0.657 Sum_probs=40.6
Q ss_pred CCCccccccccccCCCeeeec-CCCCCccchhhHHHHHcCCCCCccccccccCCCC
Q 031354 100 EESECCICLGVFEDGDKVKIL-PKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSA 154 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 154 (161)
+...|+||++.|.+ . ..+ + |||.||..||..|+. ..||+||.++...+.
T Consensus 21 ~~~~C~IC~~~~~~--p-v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 21 KLLRCSRCTNILRE--P-VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDL 70 (117)
T ss_dssp HTTSCSSSCSCCSS--C-BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSC
T ss_pred hCCCCCCCChHhhC--c-cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccccc
Confidence 45689999999965 3 345 7 999999999999998 789999999865443
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.31 E-value=4.2e-13 Score=80.64 Aligned_cols=44 Identities=30% Similarity=0.716 Sum_probs=38.0
Q ss_pred CCCccccccccccCCCeeeecCCCCCc-cchhhHHHHHcCCCCCccccccccC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45689999999765 56789 9999 999999999 789999998864
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.29 E-value=1.7e-12 Score=74.65 Aligned_cols=50 Identities=24% Similarity=0.673 Sum_probs=39.5
Q ss_pred CCCCCccccccccccCCCeeeecCCCC--C---ccchhhHHHHHcC--CCCCccccccccC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCR--H---CYHCECVDAWLSA--RSSCPLCRNSLRV 151 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~--H---~FH~~Ci~~Wl~~--~~~CP~CR~~l~~ 151 (161)
..+...|.||+++. ++.+ ++| |. | .||..|+++|+.. +.+||+||.++..
T Consensus 3 ~~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45677999999983 3444 688 76 4 8999999999974 5789999998753
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.6e-12 Score=73.57 Aligned_cols=50 Identities=28% Similarity=0.695 Sum_probs=41.0
Q ss_pred CCCCCCCCccccccccccCCCeeeecCCCCCc-cchhhHHHHHcCCCCCccccccccCC
Q 031354 95 KDDKEEESECCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
+....+...|.||++.+.+ +..+| |||. |+..|+.. ...||+||.++...
T Consensus 9 e~~~~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSCCCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred cccCCCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3445567899999998765 77899 9999 99999984 47899999998754
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.21 E-value=4.5e-12 Score=87.91 Aligned_cols=54 Identities=24% Similarity=0.482 Sum_probs=44.3
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC-CCCccccccccCCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR-SSCPLCRNSLRVDSA 154 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~~~ 154 (161)
...+...|+||++.|.+ . ..++ |||.|+..||.+|+..+ .+||+||.++...+.
T Consensus 14 ~~~~~~~C~IC~~~~~~--p-v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 14 PLESKYECPICLMALRE--A-VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (170)
T ss_dssp CCCGGGBCTTTCSBCSS--E-EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCCCChhhcC--c-EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh
Confidence 34567799999999875 3 4578 99999999999999864 489999999876543
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=74.53 Aligned_cols=45 Identities=29% Similarity=0.708 Sum_probs=37.2
Q ss_pred CCCccccccccccCCCeeeecCCCCCc-cchhhHHHHHcCCCCCccccccccCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
+...|+||++.+.+ ...+| |||. ||..|+.. ...||+||.++...
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 34589999999765 56789 9999 99999975 37899999998654
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=2e-11 Score=76.58 Aligned_cols=49 Identities=24% Similarity=0.626 Sum_probs=41.5
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC--------CCCCcc--cccc
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA--------RSSCPL--CRNS 148 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~ 148 (161)
.+...|+||++++...+.+...+ |||.|+.+|+..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45678999999998877777778 9999999999999963 246999 9987
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.3e-11 Score=77.46 Aligned_cols=53 Identities=23% Similarity=0.470 Sum_probs=41.1
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC------CCCcc--cccc-ccCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR------SSCPL--CRNS-LRVDS 153 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~-l~~~~ 153 (161)
......|+||++.|.+ .|.... |||.|+..||.+|+..+ .+||+ |+.. +...+
T Consensus 4 ~~~~~~CPI~~~~~~d--PV~~~~-cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK--PVKNKV-CGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp CSSCCBCTTTCSBCSS--EEEESS-SCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CCcEeECcCcCchhcC--CEEcCC-CCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 3466789999999874 554335 99999999999999753 48999 9866 55443
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.11 E-value=1.7e-11 Score=74.39 Aligned_cols=44 Identities=27% Similarity=0.640 Sum_probs=37.3
Q ss_pred CCCccccccccccCCCeeeecCCCCCc-cchhhHHHHHcCCCCCccccccccC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
+...|+||++.+.+ ...+| |||. |+..|+..| ..||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 34589999998765 66789 9999 999999987 489999998864
No 66
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=4.5e-11 Score=88.65 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=45.8
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccccCCCCCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~~~ 157 (161)
.......|+||++-|.+ -.++| |||.|+..||..|+.. ..+||+||.++......|.
T Consensus 204 ~~~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CCCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CCCcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 34467799999999875 44688 9999999999999985 4559999999976655443
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.01 E-value=1.5e-10 Score=80.51 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=46.0
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC-CCCccccccccCCCCCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR-SSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~~~~~~ 157 (161)
.......|+||++-|.+ .| ++| |||.|...||..|+..+ .+||+||.++......|.
T Consensus 102 ~ip~~f~CPI~~elm~D--PV-~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE--PC-ITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp CCCGGGBCTTTCSBCSS--EE-ECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred CCcHhhcccCccccCCC--Ce-ECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 34567899999999875 44 568 99999999999999863 579999999877655543
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.92 E-value=2.4e-10 Score=87.26 Aligned_cols=45 Identities=31% Similarity=0.764 Sum_probs=38.5
Q ss_pred CCCccccccccccCCCeeeecCCCCCc-cchhhHHHHHcCCCCCccccccccCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHC-YHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||.++...
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 35689999999865 66779 9999 999999998 6899999998643
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.91 E-value=4.8e-10 Score=81.73 Aligned_cols=56 Identities=18% Similarity=0.433 Sum_probs=44.7
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC--CCCcc--ccccccCCCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR--SSCPL--CRNSLRVDSALP 156 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~l~~~~~~~ 156 (161)
......|+||++.|. +.|+.+. |||.|+..||.+|+..+ .+||+ ||..+...+..|
T Consensus 178 ~~~el~CPIcl~~f~--DPVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 178 GKIELTCPITCKPYE--APLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp SBCCSBCTTTSSBCS--SEEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred CceeeECcCccCccc--CCeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 345669999999985 6776667 99999999999999864 46999 999886654433
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.90 E-value=3.5e-10 Score=65.10 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=43.5
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCCCCCC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 156 (161)
...|+||++-+.+ .|...+ +||+|-..||.+|++.+.+||+.+.++...+.+|
T Consensus 3 ~~~CpIs~~~m~d--PV~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRR--PVLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSS--EEEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred eEEecCCCCCCCC--CEEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 3579999999884 453336 9999999999999998888999999998766554
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.68 E-value=1.6e-08 Score=62.75 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=38.2
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcC-CCCCccccccccCCC
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-RSSCPLCRNSLRVDS 153 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~ 153 (161)
-|.+|--.+ ....|.+| |+|+|+.+|+..|.++ .++||+||.++..-+
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 366775444 45788999 9999999999999865 688999999986543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.34 E-value=3.4e-07 Score=66.49 Aligned_cols=50 Identities=22% Similarity=0.597 Sum_probs=40.4
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCC--CCccccccccCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARS--SCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~l~~~ 152 (161)
....|+||.+-...|..+ ++|+|.||..|+.+|++.+. +||.|+.+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 477999999988766444 34999999999999998654 899999886544
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.59 E-value=7.5e-05 Score=45.52 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=43.8
Q ss_pred CCCCCCCCccccccccccCCCeeeecCCCC-CccchhhHHHHHcCCCCCccccccccCCCCCC
Q 031354 95 KDDKEEESECCICLGVFEDGDKVKILPKCR-HCYHCECVDAWLSARSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~~v~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 156 (161)
.....+...|--|+-+++. -| . |+ |+++..|+..-|.+...||+|+.+|...-.++
T Consensus 22 d~s~~G~~nCKsCWf~~k~--LV---~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENKG--LV---E-CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp SCCCSCCCCCCSSCSCCSS--EE---E-CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred CccccCcccChhhccccCC--ee---e-ecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 4556677899999977543 23 3 65 99999999999999999999999997654433
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.18 E-value=0.00044 Score=39.91 Aligned_cols=50 Identities=18% Similarity=0.428 Sum_probs=36.1
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCC----CCCccccccc
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSAR----SSCPLCRNSL 149 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~l 149 (161)
+.......|.||-+. ++.+ .-..|...||..|++..|... ..||.|+...
T Consensus 7 ~~~~~~~~C~vC~~~---~~ll-~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 7 QNLAPGARCGVCGDG---TDVL-RCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTCCCTTTSCC---TTCE-ECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred cCCCCCCCcCCCCCC---CeEE-ECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 344556789999753 4444 444488999999999888653 3699997654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.62 E-value=0.001 Score=41.49 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=27.5
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHH
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~W 135 (161)
++..|.||++++.......-+. |+|.|+..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3468999998765445555588 9999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.48 E-value=0.0067 Score=36.21 Aligned_cols=38 Identities=16% Similarity=0.460 Sum_probs=26.6
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHH
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~W 135 (161)
+....++.|.|| +.+..++... -..|+-+||..|+.+-
T Consensus 10 e~~~~D~~C~VC-~~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVC-EVWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTT-CCCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCcc-ccccccceec-cccccccccHhhcccc
Confidence 345578899999 5555444332 2238999999999995
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=95.47 E-value=0.011 Score=33.32 Aligned_cols=49 Identities=24% Similarity=0.653 Sum_probs=34.4
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCcccccc
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNS 148 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 148 (161)
.....+..|.+|-+. ++.+. -..|...||..|++.=+.. ...||.|+..
T Consensus 6 ~~~~~~~~C~vC~~~---g~ll~-CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG---GEIIL-CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSCC---SSEEE-CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCCC---CcEEE-CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345667899999863 44444 3448889999999985543 3469999753
No 78
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.88 E-value=0.023 Score=34.45 Aligned_cols=58 Identities=24% Similarity=0.515 Sum_probs=39.0
Q ss_pred CCCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCccccccccCCCCCC
Q 031354 95 KDDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNSLRVDSALP 156 (161)
Q Consensus 95 ~~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~~~~~~~ 156 (161)
......+..|.+|.+. ++.+ .-..|.-.||..|+++=+.. ...||.|+..-..++...
T Consensus 19 ~~~d~n~~~C~vC~~~---g~LL-~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke~~~ 80 (88)
T 1fp0_A 19 GTLDDSATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDV 80 (88)
T ss_dssp CSSSSSSSCCSSSCSS---SCCE-ECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCCSST
T ss_pred cccCCCCCcCcCcCCC---CCEE-ECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccchhhc
Confidence 3445667799999864 4444 34448889999999876543 246999987655444443
No 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.76 E-value=0.0099 Score=37.67 Aligned_cols=48 Identities=23% Similarity=0.524 Sum_probs=32.2
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCcccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCR 146 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR 146 (161)
..+++.|.||.+.=+.++.+.-- .|+..||..|++..+.. ...||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence 35778999998763323334434 49999999999987652 23466654
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=94.76 E-value=0.0073 Score=42.65 Aligned_cols=49 Identities=27% Similarity=0.573 Sum_probs=35.2
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCcccccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNSLR 150 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 150 (161)
...++.|.+|-+. |+ +....+|...||..|+.+-+.. ...||.|+..-.
T Consensus 4 d~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3466789999754 33 4455558899999999887654 246999986543
No 81
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.70 E-value=0.0045 Score=34.28 Aligned_cols=47 Identities=28% Similarity=0.682 Sum_probs=32.8
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCccccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRN 147 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 147 (161)
....+..|.+|-+. ++.+. -..|...||..|+++=+.. ...||.|+.
T Consensus 5 ~~~~~~~C~vC~~~---g~ll~-Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQLLM-CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---SCCEE-CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---CeEEE-cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34567789999874 44444 3348899999999965543 235999964
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=94.58 E-value=0.013 Score=33.42 Aligned_cols=52 Identities=21% Similarity=0.483 Sum_probs=35.2
Q ss_pred CCCCCcccccccccc-CCCeeeecCCCCCccchhhHHHHH-------cCCCCCccccccc
Q 031354 98 KEEESECCICLGVFE-DGDKVKILPKCRHCYHCECVDAWL-------SARSSCPLCRNSL 149 (161)
Q Consensus 98 ~~~~~~CaICL~~f~-~~~~v~~lp~C~H~FH~~Ci~~Wl-------~~~~~CP~CR~~l 149 (161)
..++..|.||..... ++..+..-..|.-.||..|+..=+ .....||.|+...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456789999997642 233444555588999999988633 2335699997543
No 83
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=94.57 E-value=0.044 Score=36.30 Aligned_cols=47 Identities=17% Similarity=0.461 Sum_probs=33.8
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHc-----------CCCCCccccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS-----------ARSSCPLCRN 147 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~ 147 (161)
....++.|.+|-+. |+.+ .-..|-.+||..||+.=+. ....||+|+.
T Consensus 59 ~Dg~~d~C~vC~~G---G~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG---GNLI-CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCC---SSEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCC---CcEE-eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34567899999875 4444 4444889999999996552 2457999974
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=94.54 E-value=0.0097 Score=33.55 Aligned_cols=48 Identities=23% Similarity=0.552 Sum_probs=33.1
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCccccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNSL 149 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 149 (161)
...+..|.||-+. ++.+ .-.+|...||..|+..=+.. ...||.|+...
T Consensus 6 d~~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SSCB-CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CCEE-EcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4567789999753 4444 33348889999999865543 34599997654
No 85
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=94.53 E-value=0.008 Score=41.60 Aligned_cols=47 Identities=26% Similarity=0.620 Sum_probs=34.0
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCcccccccc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNSLR 150 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 150 (161)
+++.|.+|-+. |+.+ ...+|.-.||..|+.+-+.. ...||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~ll-~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GELL-CCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SSCE-ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ceee-ecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 56789999854 5544 44458899999999876654 246999987543
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.46 E-value=0.019 Score=30.98 Aligned_cols=44 Identities=25% Similarity=0.628 Sum_probs=29.4
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCccccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRN 147 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 147 (161)
.|.||...-..++.+ .-..|...||..|++.=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588887654333444 44458899999999764433 235999964
No 87
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=94.45 E-value=0.0047 Score=34.73 Aligned_cols=49 Identities=27% Similarity=0.653 Sum_probs=34.2
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCccccccccCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~~~ 152 (161)
.+..|.||-.. ++.+. -..|.-.||..|+.+=+.. ...||.|+......
T Consensus 4 ~~~~C~vC~~~---g~ll~-Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLM-CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CCSSCTTTCCC---SSCEE-CSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCCcCCCCC---CcEEE-cCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 56789999874 44444 3448899999999965543 34599997665443
No 88
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.40 E-value=0.018 Score=32.65 Aligned_cols=51 Identities=20% Similarity=0.473 Sum_probs=34.8
Q ss_pred CCCCCccccccccccCCC-eeeecCCCCCccchhhHHHHHc-----CCCCCccccccc
Q 031354 98 KEEESECCICLGVFEDGD-KVKILPKCRHCYHCECVDAWLS-----ARSSCPLCRNSL 149 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~-~v~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l 149 (161)
..+...|+||...+.++. .|.-- .|..=||..|+.--.. .+-.||.|+..-
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCD-LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECS-SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEcc-CCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 456678999998886444 55444 3888899999864322 245699997643
No 89
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.27 E-value=0.015 Score=34.16 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=36.2
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCccccccccC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNSLRV 151 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~~ 151 (161)
...+...|.||-.....+..| .--.|.--||..|+..-... ...||.|+..+..
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi-~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMI-GCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEE-ECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred cCCCCcCCCCCCCCCCCCCEE-EcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 345566799998765332344 34448888999999865442 3469999876643
No 90
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=94.14 E-value=0.022 Score=33.11 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=35.1
Q ss_pred CCCCCCccccccccc-cCCCeeeecCCCCCccchhhHHHHHcC--CCCCcccccc
Q 031354 97 DKEEESECCICLGVF-EDGDKVKILPKCRHCYHCECVDAWLSA--RSSCPLCRNS 148 (161)
Q Consensus 97 ~~~~~~~CaICL~~f-~~~~~v~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~ 148 (161)
....+..|.||.+.- .+++.+..-..|.-.||..|+..-... ...||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 456678999998753 233445455558899999999853322 3469999653
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=94.09 E-value=0.0087 Score=34.30 Aligned_cols=47 Identities=23% Similarity=0.637 Sum_probs=33.1
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCcccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNS 148 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 148 (161)
...+..|.||-+. ++.+ .-..|.-.||..|+..=+.. ...||.|...
T Consensus 5 ~~~~~~C~vC~~~---g~ll-~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELI-CCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---SSCE-ECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---CCEE-EcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4567899999864 4444 44448889999999865443 3459999653
No 92
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=93.65 E-value=0.037 Score=33.55 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=36.5
Q ss_pred CCCCCCccccccccc-cCCCeeeecCCCCCccchhhHHHHHcC--CCCCccccccccC
Q 031354 97 DKEEESECCICLGVF-EDGDKVKILPKCRHCYHCECVDAWLSA--RSSCPLCRNSLRV 151 (161)
Q Consensus 97 ~~~~~~~CaICL~~f-~~~~~v~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~ 151 (161)
...++..|.||.+.- .+++.+..-..|.-.||..|+..=+.. ...||.|......
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 345678999998753 233345455558889999999864322 3469999765443
No 93
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=93.49 E-value=0.084 Score=34.33 Aligned_cols=48 Identities=17% Similarity=0.452 Sum_probs=33.1
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHH------c-----CCCCCcccccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWL------S-----ARSSCPLCRNS 148 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl------~-----~~~~CP~CR~~ 148 (161)
....++.|.||-+. |+ +..-..|-.+||.+||..=+ . ....|++|+..
T Consensus 53 ~Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34566789999864 33 43444588999999999742 1 23579999654
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=93.32 E-value=0.13 Score=32.49 Aligned_cols=47 Identities=23% Similarity=0.513 Sum_probs=29.2
Q ss_pred CCCcccccccccc-----CCCeeeecCCCCCccchhhHHHH------H-cCCCCCcccc
Q 031354 100 EESECCICLGVFE-----DGDKVKILPKCRHCYHCECVDAW------L-SARSSCPLCR 146 (161)
Q Consensus 100 ~~~~CaICL~~f~-----~~~~v~~lp~C~H~FH~~Ci~~W------l-~~~~~CP~CR 146 (161)
....|.+|+..=. .++++..-..|+..||..|+..+ + .....||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4568999987631 22334344449999999999532 2 2344577664
No 95
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.80 E-value=0.04 Score=38.15 Aligned_cols=48 Identities=25% Similarity=0.537 Sum_probs=33.3
Q ss_pred CCccccccccccCCCe---eeecCCCCCccchhhHHH------HHc-----CCCCCcccccc
Q 031354 101 ESECCICLGVFEDGDK---VKILPKCRHCYHCECVDA------WLS-----ARSSCPLCRNS 148 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~---v~~lp~C~H~FH~~Ci~~------Wl~-----~~~~CP~CR~~ 148 (161)
+..|+||-..|.+++. ......|..=||..|+.- -+. ..-.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4579999999988762 333334889999999632 111 14689999865
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=92.55 E-value=0.032 Score=35.41 Aligned_cols=45 Identities=27% Similarity=0.614 Sum_probs=30.4
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCccccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRN 147 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 147 (161)
.|.||-+.-.+++.+..-..|...||..|+++=|.. ...||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688887643333344444458899999999875543 246999974
No 97
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.36 E-value=0.031 Score=33.90 Aligned_cols=55 Identities=16% Similarity=0.447 Sum_probs=37.4
Q ss_pred CCCccccccccccC-CCeeeecCCCCCccchhhHHHHHc--------CCCCCccccccccCCCC
Q 031354 100 EESECCICLGVFED-GDKVKILPKCRHCYHCECVDAWLS--------ARSSCPLCRNSLRVDSA 154 (161)
Q Consensus 100 ~~~~CaICL~~f~~-~~~v~~lp~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~l~~~~~ 154 (161)
.+..|.||...-.. ++.+..--.|...||..|++.=|. ....||.|+........
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~ 78 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTT
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhcc
Confidence 45689999875322 234445555889999999987553 23569999876655443
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=91.99 E-value=0.077 Score=32.78 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=31.6
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC---CCCCccccc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA---RSSCPLCRN 147 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~ 147 (161)
+...| ||-.....+..|.--. |.--||..|+..=+.. ...||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~-C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDK-CSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTT-TCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCC-CCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34568 8877766666665444 8899999998753221 346999963
No 99
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.71 E-value=0.028 Score=34.41 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=33.9
Q ss_pred CCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCcccccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNS 148 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 148 (161)
...+...|.||...-..+..+ .-..|...||..|+.+=|.. ...||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll-~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLL-FCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCE-ECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEE-EcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 344556899998764333344 44458899999999854432 3459999764
No 100
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=91.63 E-value=0.15 Score=32.37 Aligned_cols=45 Identities=24% Similarity=0.476 Sum_probs=28.1
Q ss_pred CccccccccccC------CCeeeecCCCCCccchhhHHHHH-------cCCCCCcccc
Q 031354 102 SECCICLGVFED------GDKVKILPKCRHCYHCECVDAWL-------SARSSCPLCR 146 (161)
Q Consensus 102 ~~CaICL~~f~~------~~~v~~lp~C~H~FH~~Ci~~Wl-------~~~~~CP~CR 146 (161)
+.|.+|+..-.. ++.+..-..|+..||..|++.+. ...-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 579999875421 22333333499999999987542 1244577663
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=91.51 E-value=0.039 Score=38.34 Aligned_cols=46 Identities=30% Similarity=0.657 Sum_probs=31.8
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCcccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 150 (161)
++.|.+|.+. |+.+. ..+|...||..|+.+=+.. ...||.|+..-.
T Consensus 2 ~~~C~~C~~~---g~ll~-Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVM-CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCCBTTTCCC---SSCCC-CTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCcCccCCCC---CceeE-CCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 5679999854 44443 3348889999999764432 246999986643
No 102
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=91.25 E-value=0.27 Score=30.87 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=32.8
Q ss_pred CCCCCCCccccccccccCCCeeeecC--CCCCccchhhHHHHHcC----CCCCccccccccC
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILP--KCRHCYHCECVDAWLSA----RSSCPLCRNSLRV 151 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp--~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~~ 151 (161)
.....++.|.+|.+. |+.+ .-. .|-..||..|+. |.. +..||-|+..+-.
T Consensus 10 ~~~~~~~~C~~C~~~---G~ll-~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 10 PKQMHEDYCFQCGDG---GELV-MCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CCCSSCSSCTTTCCC---SEEE-ECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CcCCCCCCCCcCCCC---CcEe-EECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 345677889999842 4433 333 377899999998 543 2358887655543
No 103
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=90.40 E-value=1.3 Score=24.07 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=14.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAVVLLVSFLFLYARWFCR 53 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~~~~~~~~~~ 53 (161)
..+++++.++.+.++++++.+++.+.-..
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 34555555555555555444444444333
No 104
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=90.19 E-value=0.15 Score=34.63 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=31.9
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHH-----cCCCCCcccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWL-----SARSSCPLCRNS 148 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 148 (161)
......| +|-....++.....-..|..-||..|+.--. ...-.||.|+..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 3456789 9988765444333334488899999985211 224579999764
No 105
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=89.58 E-value=1.5 Score=23.78 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 25 GRTLFSIIVVFAVVLLVSFLFLYARW 50 (161)
Q Consensus 25 ~~~i~ii~~l~~~~l~~~~~~~~~~~ 50 (161)
..+++++.++.+.++++++.+++.+.
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444555554444444444444433
No 106
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=88.98 E-value=0.057 Score=31.87 Aligned_cols=45 Identities=33% Similarity=0.703 Sum_probs=28.0
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcC----C-CCCcccccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----R-SSCPLCRNS 148 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~-~~CP~CR~~ 148 (161)
.|.||-..-..+ .+..--.|...||..|+++=|.. . -.||.|+.+
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 566665543333 33344448899999999976643 2 469999763
No 107
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.72 E-value=0.33 Score=41.67 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=46.0
Q ss_pred CCCCCccccccccccCCCeeeecCCCC-CccchhhHHHHHcCCCCCccccccccCCCCCCC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCR-HCYHCECVDAWLSARSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~ 157 (161)
..+...|+|=++-+.+ -.++| -| +.|=...|.+|+..+.+||+=|.++.....+|.
T Consensus 888 iP~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp SCGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred CcHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 3456689999998765 44688 87 589999999999999999999999987766654
No 108
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.17 E-value=0.51 Score=26.72 Aligned_cols=36 Identities=19% Similarity=0.526 Sum_probs=24.7
Q ss_pred CCCCCccccccccccCCCeeeecC-CCCCccchhhHH
Q 031354 98 KEEESECCICLGVFEDGDKVKILP-KCRHCYHCECVD 133 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp-~C~H~FH~~Ci~ 133 (161)
......|.+|...+.+++....-. .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 445668999999987766554544 588889999963
No 109
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.90 E-value=0.61 Score=27.36 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=32.6
Q ss_pred CCCCCcccccccccc-CCCeeeecCCCCCccchhhHHHHHc-----CCCCCccccccc
Q 031354 98 KEEESECCICLGVFE-DGDKVKILPKCRHCYHCECVDAWLS-----ARSSCPLCRNSL 149 (161)
Q Consensus 98 ~~~~~~CaICL~~f~-~~~~v~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l 149 (161)
......| ||-..+. .+..|.--- |..=||..|+.---. ..-.||.|+...
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGL-CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTT-TCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCC-CCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3455677 8988875 344555444 888899999852211 245699998653
No 110
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.86 E-value=0.15 Score=30.08 Aligned_cols=46 Identities=26% Similarity=0.653 Sum_probs=30.5
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-----CCCCccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-----RSSCPLCRN 147 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 147 (161)
+..|.||...-..++.+ .-..|...||..|+++=|.. .-.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQL-LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEE-ECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEE-EcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34789998643334444 44458899999999854432 245999965
No 111
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=87.22 E-value=0.54 Score=24.44 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031354 34 VFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 34 l~~~~l~~~~~~~~~~~~~~~ 54 (161)
++.+++++...++++|.+.++
T Consensus 20 v~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 444444555555666655544
No 112
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.02 E-value=0.33 Score=28.50 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=33.8
Q ss_pred CCCCccccccccccCCCeeeec--CCCCCccchhhHHHHH---------cCCCCCccccccccC
Q 031354 99 EEESECCICLGVFEDGDKVKIL--PKCRHCYHCECVDAWL---------SARSSCPLCRNSLRV 151 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~l--p~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~l~~ 151 (161)
.....| ||-.....+.+|.-- . |..=||..|+.--- ..+..||.|+..-..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~-C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPR-CHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTT-TCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCcc-CCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 355678 798775566666544 4 88889999986321 124569999765443
No 113
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.96 E-value=0.51 Score=27.44 Aligned_cols=48 Identities=21% Similarity=0.379 Sum_probs=32.6
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHH---------HcCCCCCcccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAW---------LSARSSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~W---------l~~~~~CP~CR~~l~ 150 (161)
...| ||-..+..+..|.--. |..=||..|+.-- ...+-.||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~-C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEeCC-CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4567 8988776555665444 8888999997421 124577999976543
No 114
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.87 E-value=0.17 Score=31.77 Aligned_cols=47 Identities=23% Similarity=0.512 Sum_probs=30.0
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCcccccccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNSLR 150 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 150 (161)
.|.+|-..-.+...+ .-..|...||..|+++=+.. ...||.|+.--.
T Consensus 56 ~C~~C~~~~~~~~ll-~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGEDSKML-VCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSCCTTEE-ECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred cccccCccCCCCCee-ECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 466776653333344 34448899999999865443 345999976543
No 115
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=86.76 E-value=0.11 Score=32.51 Aligned_cols=51 Identities=25% Similarity=0.517 Sum_probs=33.3
Q ss_pred CccccccccccCCCeeeecC-CCCCccchhhHHHH------H----cCCCCCccccccccCC
Q 031354 102 SECCICLGVFEDGDKVKILP-KCRHCYHCECVDAW------L----SARSSCPLCRNSLRVD 152 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp-~C~H~FH~~Ci~~W------l----~~~~~CP~CR~~l~~~ 152 (161)
..|.||...+.++.....-- .|.-=||..|+.-= + ..+..||.|+..-...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~ 65 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS 65 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCC
Confidence 46999999986654443442 47777999996421 1 0235699998765443
No 116
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=86.74 E-value=0.8 Score=27.97 Aligned_cols=36 Identities=8% Similarity=0.296 Sum_probs=20.8
Q ss_pred CCCCCCcccCCCCCccccccchHHHHHHHHHHHHHH
Q 031354 6 SQPFHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~ii~~l~~~~l~~ 41 (161)
+....|.|.++|..+.-++...++++.+++++++++
T Consensus 51 SsaGllRfY~dds~GlKV~P~~VLv~sl~Fi~~Vi~ 86 (96)
T 2wwb_C 51 GTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFM 86 (96)
T ss_dssp ----------CCSCCCCCSSCSHHHHHHHHHHHHHH
T ss_pred CCcceeeeeecCCCceEECCEEehhhHHHHHHHHHH
Confidence 445778888878888999999888888777766654
No 117
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=86.20 E-value=0.7 Score=26.62 Aligned_cols=47 Identities=28% Similarity=0.665 Sum_probs=29.9
Q ss_pred CCCCCccccccccccCCCeeeecCC--CC-CccchhhHHHHHcC----CCCCccccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPK--CR-HCYHCECVDAWLSA----RSSCPLCRNSL 149 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~l 149 (161)
..+...| ||-... .++.| .--+ |. .-||..|+. |.. +..||.|+..-
T Consensus 13 ~~~~~~C-~C~~~~-~g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCS-CSSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCC-CCCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3456678 797753 35544 3334 44 579999998 443 24599997654
No 118
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=85.99 E-value=0.15 Score=29.36 Aligned_cols=44 Identities=34% Similarity=0.720 Sum_probs=28.1
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcC-----CCCCccccc
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-----RSSCPLCRN 147 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 147 (161)
.|.||...-..+ .+..-..|...||..|+++=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 567776532223 34344458899999999854432 336999975
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=85.73 E-value=0.086 Score=33.49 Aligned_cols=48 Identities=25% Similarity=0.529 Sum_probs=31.9
Q ss_pred ccccccccccCCCeeeecCCCCCccchhhHHHHHcC----CCCCccccccccC
Q 031354 103 ECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA----RSSCPLCRNSLRV 151 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~~ 151 (161)
.|.||-..-.+++.+. -..|...||..|+++=|.. ...||.|+..+..
T Consensus 60 ~C~~C~~~~~~~~ll~-Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSENDDQLLF-CDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTTTTEEE-CSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCCCceEE-cCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 5888877544444444 3448899999999964433 2359999765543
No 120
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.34 E-value=0.6 Score=28.36 Aligned_cols=48 Identities=27% Similarity=0.644 Sum_probs=30.2
Q ss_pred CCCCCccccccccccCCCeeeecCC--CC-CccchhhHHHHHcC----CCCCcccccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPK--CR-HCYHCECVDAWLSA----RSSCPLCRNSLR 150 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 150 (161)
..+...| ||-... .++.| .--+ |. .-||..|+. |.. +..||.|+..-.
T Consensus 33 ~~e~~yC-iC~~~~-~g~MI-~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 33 PNEPTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp SCCCBCS-TTCCBC-CSCCC-CCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCCcEE-ECCCCC-CCCEe-EecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 3455678 998754 24444 2333 44 569999998 433 346999976544
No 121
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=85.01 E-value=0.93 Score=27.25 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=35.9
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHc-------CCCCCccccccccC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS-------ARSSCPLCRNSLRV 151 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~l~~ 151 (161)
..+...|.+|-..|..-..-.--..||++|+..|....+. ....|-.|-..+..
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 4455689999999875432223345999999999866431 12358888666543
No 122
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=84.64 E-value=2 Score=22.04 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=8.8
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 031354 26 RTLFSIIVVFAVVLLVSFLFL 46 (161)
Q Consensus 26 ~~i~ii~~l~~~~l~~~~~~~ 46 (161)
.+++++.++...+++..+.+.
T Consensus 10 ~wiIi~s~l~GLllL~li~~~ 30 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLA 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=84.27 E-value=0.87 Score=27.45 Aligned_cols=52 Identities=15% Similarity=0.363 Sum_probs=34.2
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC------CCCCccccccccC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA------RSSCPLCRNSLRV 151 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~ 151 (161)
+...|.+|-..|.--..-..-..||++|+..|...+... ...|-.|-..+..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 345799999998754333334459999999998765421 2347777555543
No 124
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=84.22 E-value=0.3 Score=27.93 Aligned_cols=50 Identities=20% Similarity=0.407 Sum_probs=32.9
Q ss_pred CCCCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHc---CCCCCccccc
Q 031354 96 DDKEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS---ARSSCPLCRN 147 (161)
Q Consensus 96 ~~~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 147 (161)
....+...| ||-..+..+..|.--. |..=||..|+.---. ..-.||.|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~~~~MIqCd~-C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CTTTTCCCS-TTCCCCTTCCEEECTT-TCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCCceEe-ECCCcCCCCCEEECCC-CCccccccccCcCcccCCCcEECCCCCC
Confidence 344566788 9987765444665444 888899999864221 2346999964
No 125
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=83.92 E-value=0.94 Score=26.77 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=33.0
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC------CCCCcccccccc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA------RSSCPLCRNSLR 150 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~ 150 (161)
+...|.+|-..|.--..-.--..||.+|+..|....+.. ...|-.|-..|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 445799999999754322333459999999998764311 124777755544
No 126
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=83.91 E-value=1.6 Score=22.63 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031354 32 IVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 32 ~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
..++..+++++++.+...++.++
T Consensus 15 ~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eehhHHHHHHHHHHHHHHHHhhh
Confidence 33334344444444444444444
No 127
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=83.81 E-value=1.1 Score=26.53 Aligned_cols=54 Identities=19% Similarity=0.363 Sum_probs=35.4
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHc--------CCCCCccccccccCCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS--------ARSSCPLCRNSLRVDS 153 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~l~~~~ 153 (161)
+...|.+|-..|..-..-.--..||++|+..|...... ....|-.|-..+....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~~ 81 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSSN 81 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTSC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhcc
Confidence 45689999999975432233345999999999876531 1235777766555443
No 128
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=83.27 E-value=0.94 Score=29.12 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=25.7
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHH
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~W 135 (161)
....|.+|-..|.--..-..-..||++|+..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 345899999998753322233459999999997654
No 129
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.12 E-value=0.36 Score=27.81 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=32.4
Q ss_pred CCCCccccccccccCCC-eeeecCCCCCccchhhHHHHH----cCCCCCcccccccc
Q 031354 99 EEESECCICLGVFEDGD-KVKILPKCRHCYHCECVDAWL----SARSSCPLCRNSLR 150 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~-~v~~lp~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~l~ 150 (161)
.....| ||-....+++ .|.-- .|..=||..|+.--- ..+-.||.|+..-.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd-~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACD-GCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECS-SSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred CcceEe-eCCCccCCCCcEEECC-CCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 345578 6988766664 55444 387779999986421 12346999976543
No 130
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=82.98 E-value=0.19 Score=32.22 Aligned_cols=50 Identities=18% Similarity=0.398 Sum_probs=31.5
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 149 (161)
....|..|-..|..-..-....+||.+|+..|..........|-.|...+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 34689999998865322223345999999999877665566688885543
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=82.94 E-value=1.1 Score=25.82 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=24.3
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHH
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~W 135 (161)
..|.+|-..|.--..-.--..||++|+..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5899999998753322233459999999997543
No 132
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=82.42 E-value=0.49 Score=25.37 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=27.6
Q ss_pred ccccccccccCCCeeeecC-CCCCccchhhHHHH----HcCCCCCcccc
Q 031354 103 ECCICLGVFEDGDKVKILP-KCRHCYHCECVDAW----LSARSSCPLCR 146 (161)
Q Consensus 103 ~CaICL~~f~~~~~v~~lp-~C~H~FH~~Ci~~W----l~~~~~CP~CR 146 (161)
.|.+|...+.+++....-. .|.-=||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4678888876544333333 38877999996521 12456799885
No 133
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=82.08 E-value=0.36 Score=26.75 Aligned_cols=44 Identities=32% Similarity=0.745 Sum_probs=27.8
Q ss_pred CCCCccccccccccCCCeeeecCC--CC-CccchhhHHHHHcC----CCCCccccc
Q 031354 99 EEESECCICLGVFEDGDKVKILPK--CR-HCYHCECVDAWLSA----RSSCPLCRN 147 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 147 (161)
.+...| ||-... .|+.| .-.+ |. .-||..|+. +.. +-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~-~g~mi-~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS-YGEMI-GCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC-CCCee-EeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345667 897753 34444 3444 54 589999998 443 345999964
No 134
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=81.83 E-value=0.43 Score=34.01 Aligned_cols=46 Identities=30% Similarity=0.674 Sum_probs=26.4
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHcC-----CCCCcccccc
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-----RSSCPLCRNS 148 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~ 148 (161)
..|.+|-..=..++ +..--.|...||..|+++=|.. .-.||.|+..
T Consensus 175 c~C~vC~~~~~~~~-lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--C-CEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCC-eEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 36888866422233 3344458899999999964432 2359999753
No 135
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=81.52 E-value=0.37 Score=26.77 Aligned_cols=44 Identities=30% Similarity=0.729 Sum_probs=27.1
Q ss_pred CCCCccccccccccCCCeeeecCC--CC-CccchhhHHHHHcC----CCCCccccc
Q 031354 99 EEESECCICLGVFEDGDKVKILPK--CR-HCYHCECVDAWLSA----RSSCPLCRN 147 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 147 (161)
.+...| ||-... .|+.| .--+ |. .-||..|+. |.. +..||.|+.
T Consensus 8 ~e~~~C-~C~~~~-~g~mi-~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcC-CCCEE-EeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345567 897753 24433 3344 43 579999998 443 245999964
No 136
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.07 E-value=1.4 Score=26.06 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=25.0
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHH
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~W 135 (161)
+...|.+|-..|.--..-.--..||.+|+..|....
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 445899999998653322223349999999997653
No 137
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=80.46 E-value=4.4 Score=20.93 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031354 31 IIVVFAVVLLVSFLFLYARWF 51 (161)
Q Consensus 31 i~~l~~~~l~~~~~~~~~~~~ 51 (161)
+..++.++++.+.++++.|.+
T Consensus 18 vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhheehh
Confidence 333445555555555555443
No 138
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=80.35 E-value=0.45 Score=26.64 Aligned_cols=44 Identities=30% Similarity=0.649 Sum_probs=27.5
Q ss_pred CCCCccccccccccCCCeeeecCCCC---CccchhhHHHHHcC----CCCCccccc
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCR---HCYHCECVDAWLSA----RSSCPLCRN 147 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~---H~FH~~Ci~~Wl~~----~~~CP~CR~ 147 (161)
.+...| ||-... .|+.| .--+|. .-||..|+. |.. +-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g~MI-~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YGEMI-GCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CCCee-eeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 445677 897753 35444 333433 689999998 333 346999965
No 139
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=79.96 E-value=6.1 Score=22.27 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=18.1
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Q 031354 17 DDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYA--RWFCRR 54 (161)
Q Consensus 17 ~~~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~--~~~~~~ 54 (161)
.++.|..+-..+=+.-++++++++++.++++. +++|+.
T Consensus 6 e~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 6 KGSPFYYDWESLQLGGLIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp TTSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cCCCcccchHHheecchhhHHHHHHHHHHHHHcCcccccC
Confidence 34444444444444445555555544444443 455554
No 140
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=79.85 E-value=0.27 Score=28.08 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=29.1
Q ss_pred CCCCccccccccccCCCeeeec-CCCCCccchhhHHHH---Hc-----CCCCCccccc
Q 031354 99 EEESECCICLGVFEDGDKVKIL-PKCRHCYHCECVDAW---LS-----ARSSCPLCRN 147 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~l-p~C~H~FH~~Ci~~W---l~-----~~~~CP~CR~ 147 (161)
.....| ||-.....+.+|.-= +.|..=||..|+.-- .. .+-.||.||.
T Consensus 8 e~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344567 797666666666432 127767999997321 01 1356999974
No 141
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=79.45 E-value=2.3 Score=22.98 Aligned_cols=37 Identities=8% Similarity=0.211 Sum_probs=20.5
Q ss_pred CCCCCCcccCCCCCccccccchHHHHHHHHHHHHHHH
Q 031354 6 SQPFHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLVS 42 (161)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~ii~~l~~~~l~~~ 42 (161)
++..-++|.+.++++.-++...++++.++++++++++
T Consensus 11 ssaGLvryy~ee~~giKi~P~~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 11 TSAGLIRYMDETFSKIRVKPEHVIGVTVAFVIIEAIL 47 (53)
T ss_dssp ----------CCCCSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccCCccccCCeehhhhHHHHHHHHHHH
Confidence 4456677888888888888888888777776666543
No 142
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=78.58 E-value=0.99 Score=27.02 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=14.3
Q ss_pred CCCCCCcccCCCCCccccccchHHHHHHHHHHHHHH
Q 031354 6 SQPFHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~ii~~l~~~~l~~ 41 (161)
++...+.|.++|..+.-++...++++.+++++++++
T Consensus 42 ss~gllrfYtdds~GlKV~P~~VLv~sl~FIa~Vil 77 (87)
T 2ww9_C 42 SSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVIA 77 (87)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHhhcCCCceEEcCeeehhhHHHHHHHHHH
Confidence 456778888888888888888877777776665544
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=78.49 E-value=1.2 Score=31.37 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=25.5
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHH
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAW 135 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~W 135 (161)
...|.+|-..|.--..-.-...||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47999999998753322233459999999997654
No 144
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=78.45 E-value=0.46 Score=29.59 Aligned_cols=25 Identities=24% Similarity=0.643 Sum_probs=16.3
Q ss_pred CCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 123 CRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
||+.|. .=+.....||.|++.=...
T Consensus 73 CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 73 CGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred CcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 999991 1123346799998875543
No 145
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=78.14 E-value=2 Score=24.31 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=26.6
Q ss_pred CCCCCCccccccccccCCCeeeecCCC-CCccchhhHHHH
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKC-RHCYHCECVDAW 135 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C-~H~FH~~Ci~~W 135 (161)
...+..-|.||.++ ..+|-+. | |-+|+..|..+-
T Consensus 4 ~~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 34566789999887 5588887 9 789999997763
No 146
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=78.00 E-value=1.3 Score=31.41 Aligned_cols=51 Identities=18% Similarity=0.411 Sum_probs=33.6
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC--------CCCCcccccccc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA--------RSSCPLCRNSLR 150 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~l~ 150 (161)
....|.+|-..|.--..-.....||++||..|-...... ...|-.|-..+.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 356999999998754333334459999999998765321 134777755443
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.64 E-value=2.2 Score=24.01 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=27.4
Q ss_pred CCCccccccccccC--CCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 100 EESECCICLGVFED--GDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 100 ~~~~CaICL~~f~~--~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
....|+-|-..+.. ++.+. .. -+..||.+|. +|-.|+.+|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~-~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYI-SF-EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCE-EC-SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCCcCCCccccCCCCcceE-EE-CCcccCcccC--------EeccCCCcCC
Confidence 35679999888775 33332 22 6788998875 4777777765
No 148
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=77.60 E-value=1.7 Score=28.30 Aligned_cols=50 Identities=14% Similarity=0.335 Sum_probs=31.5
Q ss_pred CCCCcccccccccc-CCCeeeecCCCCCccchhhHHHHHc-C---CCCCcccccc
Q 031354 99 EEESECCICLGVFE-DGDKVKILPKCRHCYHCECVDAWLS-A---RSSCPLCRNS 148 (161)
Q Consensus 99 ~~~~~CaICL~~f~-~~~~v~~lp~C~H~FH~~Ci~~Wl~-~---~~~CP~CR~~ 148 (161)
.+...|++|...|. .+..-++-..|.|.++..|-..--. + ...|=+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 46789999999993 3332334444999999999653211 1 1237777543
No 149
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.42 E-value=2.3 Score=23.85 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=27.3
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
...|+-|-..+..++.+. .. -+..||..|. +|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-EY-GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-CS-TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE-EE-CccccCcccC--------eECCCCCcCCC
Confidence 457899988887654442 22 5788888774 36677766654
No 150
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.28 E-value=9.4 Score=22.91 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=35.6
Q ss_pred CCCCCccccccccccCCC--eeeec-CCCCCccchhhHHHHHc-CCCCCccccccccC
Q 031354 98 KEEESECCICLGVFEDGD--KVKIL-PKCRHCYHCECVDAWLS-ARSSCPLCRNSLRV 151 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~--~v~~l-p~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~ 151 (161)
......|.||=++..... ++.+. -.|+--.+..|.+-=.+ .++.||-|+..+..
T Consensus 13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred ccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 345679999988854322 22222 11455578899876444 46889999999974
No 151
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=74.42 E-value=2.3 Score=23.73 Aligned_cols=43 Identities=23% Similarity=0.540 Sum_probs=30.9
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
....|+-|-..+..++.+.. . =|..||..|. +|-.|..+|...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~-~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-S-NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-E-TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE-e-CcCeeCcCCC--------cccCCCCCCCCC
Confidence 45689999999887775533 2 5778998886 477777776543
No 152
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=74.19 E-value=6.8 Score=23.05 Aligned_cols=59 Identities=25% Similarity=0.405 Sum_probs=39.8
Q ss_pred CCCCCCccccccccccCCCeeeecC-CCCCccchhhHHHHHcCC-----CCCccccccccCCCCCC
Q 031354 97 DKEEESECCICLGVFEDGDKVKILP-KCRHCYHCECVDAWLSAR-----SSCPLCRNSLRVDSALP 156 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp-~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~l~~~~~~~ 156 (161)
.......|.+|-+.+++..-|. .| .=+|-|+-.|-...++++ --||-=.+-....+.+|
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS~~P 75 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVP 75 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSSSSB
T ss_pred CCCCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCCcCc
Confidence 3456678999999999877664 33 235999999999888652 12666544444444444
No 153
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.87 E-value=1.9 Score=23.87 Aligned_cols=42 Identities=26% Similarity=0.671 Sum_probs=28.1
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHc-CCCCCccc
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS-ARSSCPLC 145 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~C 145 (161)
..|--|...|.+.. +..-|.|++.|+.+|=. ..- .-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 45999999986433 34456699999988832 222 22468887
No 154
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=72.84 E-value=0.55 Score=26.80 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=14.7
Q ss_pred HHHHcCCCCCccccccccCC
Q 031354 133 DAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 133 ~~Wl~~~~~CP~CR~~l~~~ 152 (161)
++||..--.||.|+.++...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 45777777899998887644
No 155
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.77 E-value=5 Score=23.25 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=29.9
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
......|+-|-..+.+++.+. . -+..||.+|.. |-.|+..|..
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~CF~--------C~~C~~~L~~ 54 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLC--V-NGHFFHRSCFR--------CHTCEATLWP 54 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCC--B-TTBCCBTTTCB--------CSSSCCBCCT
T ss_pred CCCCCCCcccCCCcccceEEE--E-CCCeeCCCcCE--------EcCCCCCcCC
Confidence 445678999999887777664 2 57889988843 5556555543
No 156
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.62 E-value=2.1 Score=24.40 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=30.9
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
.....|+.|-+.+..++.+.. -+..||.+|. +|-.|+.+|..
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCC
Confidence 345689999999887776643 5788998774 37778777764
No 157
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=72.60 E-value=1.2 Score=25.50 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=17.8
Q ss_pred CccccccccccCCCeeeecCCCCCccch-hhHHHHHcCCCCCcccc
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHC-ECVDAWLSARSSCPLCR 146 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~-~Ci~~Wl~~~~~CP~CR 146 (161)
..|..|-..+..+.-. . . =|..|+. .|..+-+ ...|--|.
T Consensus 28 F~C~~C~~~L~~~~~~-~-~-~g~~yC~~~cy~~~f--~~~C~~C~ 68 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHA-E-H-EGKPYCNHPCYSAMF--GPKGFGRG 68 (76)
T ss_dssp CBCTTTCCBCCTTTEE-E-E-TTEEEETTTHHHHHS--SCCCSSCC
T ss_pred CCccccCccCCCCceE-C-c-CCeEeeCHHHHHHHh--CccCCCcC
Confidence 3556665555543211 1 1 3455555 3554432 23355553
No 158
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=72.37 E-value=0.61 Score=26.76 Aligned_cols=20 Identities=30% Similarity=0.765 Sum_probs=13.7
Q ss_pred HHHHcCCCCCccccccccCC
Q 031354 133 DAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 133 ~~Wl~~~~~CP~CR~~l~~~ 152 (161)
++||..--.||.|+.++...
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 45666667788888887643
No 159
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=70.93 E-value=3.7 Score=27.49 Aligned_cols=46 Identities=33% Similarity=0.732 Sum_probs=32.6
Q ss_pred CCCCCCccccccccccCCCeeeecC--CCCCccchhhHHHHHcC----------CCCCcccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILP--KCRHCYHCECVDAWLSA----------RSSCPLCR 146 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR 146 (161)
....+..|.||-+. ..+..-. .|...|+.+||+.++-. ...|=+|.
T Consensus 75 eDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 75 DDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp TTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 34457799999763 4454443 48899999999999854 23588885
No 160
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=70.28 E-value=0.49 Score=26.15 Aligned_cols=50 Identities=26% Similarity=0.524 Sum_probs=34.2
Q ss_pred CCCCCCccccccc-cccCCCeeeecCCCCCccchhhHHHHHcCC-C---CCccccc
Q 031354 97 DKEEESECCICLG-VFEDGDKVKILPKCRHCYHCECVDAWLSAR-S---SCPLCRN 147 (161)
Q Consensus 97 ~~~~~~~CaICL~-~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~-~---~CP~CR~ 147 (161)
...+...|.||+. .|.+|-.-.-.. |.-.|+..|-..|-.+. + .|-+||.
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccc-cCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 4567789999986 577665554455 77778888877775432 2 3888865
No 161
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=69.42 E-value=1.1 Score=21.83 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=10.8
Q ss_pred CCCccccccccccCCC
Q 031354 100 EESECCICLGVFEDGD 115 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~ 115 (161)
+...|++|+.+|...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3467888888776533
No 162
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=69.27 E-value=4.4 Score=31.03 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=31.2
Q ss_pred CCccccccccccCCCeeeecCCCCCc--cchhhHHHHHc--CCCCCccccccccC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHC--YHCECVDAWLS--ARSSCPLCRNSLRV 151 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~--FH~~Ci~~Wl~--~~~~CP~CR~~l~~ 151 (161)
...|++=...+ ...+|-.. |.|+ |=..=+..... ....||+|...+..
T Consensus 249 SL~CPlS~~ri--~~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRM--KYPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBC--SSEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCccccc--cccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 35788766654 46888888 9998 55433333222 24579999988754
No 163
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.27 E-value=4.3 Score=22.57 Aligned_cols=41 Identities=29% Similarity=0.587 Sum_probs=26.1
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
....|+-|-..+. ++.+. . -+..||.+|. +|-.|+.+|...
T Consensus 4 ~~~~C~~C~~~I~-~~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFII-GRVIK--A-MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCC-SCCEE--E-TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCCcCccCCCEec-ceEEE--E-CcccccccCC--------EeCCCCCcCCCC
Confidence 4567888887776 33333 2 5678888775 466777666543
No 164
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=68.44 E-value=2.1 Score=24.70 Aligned_cols=47 Identities=19% Similarity=0.462 Sum_probs=29.3
Q ss_pred CCCccccccccccC-CCeeeecCCCCCccchhhHHHHHc-----CCCCCcccccc
Q 031354 100 EESECCICLGVFED-GDKVKILPKCRHCYHCECVDAWLS-----ARSSCPLCRNS 148 (161)
Q Consensus 100 ~~~~CaICL~~f~~-~~~v~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 148 (161)
....| ||-..+.. +..|.-- .|.-=||..|+.---. ..-.||.|+..
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd-~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECD-ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECT-TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEE-ECCCcCCCCCCEEEcC-CCCCCEecccccccccccCCCCEEECCCCccc
Confidence 33455 78776643 3455444 3887799999964221 23469999764
No 165
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=67.94 E-value=6.7 Score=30.18 Aligned_cols=47 Identities=34% Similarity=0.720 Sum_probs=32.8
Q ss_pred CCCCCCccccccccccCCCeeeecC--CCCCccchhhHHHHHcC----------CCCCccccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILP--KCRHCYHCECVDAWLSA----------RSSCPLCRN 147 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~ 147 (161)
....+..|.+|=+. .++.... .|...||.+||+..+-. ...|=+|.-
T Consensus 89 ~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 89 DDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34557789999764 3344433 48899999999999832 346888853
No 166
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.85 E-value=3.6 Score=23.44 Aligned_cols=45 Identities=29% Similarity=0.615 Sum_probs=27.5
Q ss_pred CCCccccccccccCCCeeeecCCCC---CccchhhHHHHHcC----CCCCccccccc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCR---HCYHCECVDAWLSA----RSSCPLCRNSL 149 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~---H~FH~~Ci~~Wl~~----~~~CP~CR~~l 149 (161)
+...| ||-.. ..+++|.--- |. .-||..|+. |.. +..||.|+...
T Consensus 5 ~~~yC-~C~~~-~~g~MI~CD~-cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQV-SYGEMVGCDN-QDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCC-CCSSEECCSC-TTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCC-CCCCEeEeCC-CCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 44566 47665 3455554333 53 569999997 332 34599997654
No 167
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=67.70 E-value=1.1 Score=34.69 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcC-------CCCCccccccc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA-------RSSCPLCRNSL 149 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~l 149 (161)
....|.+|-..|.--..-.....||++||..|...++.. ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 356899999988643222223349999999999876521 23477775544
No 168
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=67.37 E-value=5 Score=30.58 Aligned_cols=49 Identities=12% Similarity=0.253 Sum_probs=32.0
Q ss_pred CCccccccccccCCCeeeecCCCCCc--cchhhHHHHHc--CCCCCccccccccCC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHC--YHCECVDAWLS--ARSSCPLCRNSLRVD 152 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~--FH~~Ci~~Wl~--~~~~CP~CR~~l~~~ 152 (161)
...|++=...+ ...+|... |.|. |=..=+..... ....||+|...+...
T Consensus 215 SL~CPlS~~ri--~~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRL--TIPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBC--SSEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCcccee--ccCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 34788766554 46788888 9998 65433333322 245799999887543
No 169
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=69.48 E-value=1.2 Score=22.26 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031354 28 LFSIIVVFAVVLLVSFLFLYARW 50 (161)
Q Consensus 28 i~ii~~l~~~~l~~~~~~~~~~~ 50 (161)
.++..++..++++++.+++++..
T Consensus 9 ~vl~avlal~vi~iisLIiLi~~ 31 (39)
T 2l6w_A 9 VVISAILALVVLTIISLIILIML 31 (39)
Confidence 33444444444444444444433
No 170
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=65.37 E-value=17 Score=23.27 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031354 26 RTLFSIIVVFAVVLLVSFLFLYARWFCRR 54 (161)
Q Consensus 26 ~~i~ii~~l~~~~l~~~~~~~~~~~~~~~ 54 (161)
+..+++++.++.++++.++.-++|.+++.
T Consensus 53 ylYIL~vmgffgff~~GImLsYiRSKk~E 81 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIRSKKLE 81 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eehHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 33444444445555555555566665553
No 171
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.92 E-value=6.5 Score=22.48 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=27.1
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
.....|+-|-..+.. +.+ .. -+..||.+|. +|-.|+.+|.
T Consensus 13 ~~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-VFV--KL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCS-SCE--EC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCCccccCCCCccC-cEE--EE-CcceeCcCcC--------eeCCCCCCCC
Confidence 445789999888774 333 33 6789998885 3666666553
No 172
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=64.70 E-value=5.1 Score=26.72 Aligned_cols=39 Identities=23% Similarity=0.600 Sum_probs=20.5
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
..|+.|-..+..++.+.. . -++.||.+|. +|-.|+..|.
T Consensus 66 ~~C~~C~~~I~~~~~v~~-a-~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRR-A-QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEE-E-TTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEEE-c-CCceEeeCCC--------cCCCCCCCCC
Confidence 356666555554443322 2 4566666664 4566655554
No 173
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=64.65 E-value=15 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHh
Q 031354 29 FSIIVVFAVVLLVSFLFLYA--RWFCRR 54 (161)
Q Consensus 29 ~ii~~l~~~~l~~~~~~~~~--~~~~~~ 54 (161)
=+.-++++++++++.++++. +++|+.
T Consensus 17 RiGGLifA~vLfi~GI~iilS~KckCk~ 44 (72)
T 2jo1_A 17 QIGGLVIAGILFILGILIVLSRRCRCKF 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHcCccccCC
Confidence 33333444444443333333 444544
No 174
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=64.53 E-value=0.59 Score=26.73 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=12.0
Q ss_pred HHHcCCCCCccccccccCC
Q 031354 134 AWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 134 ~Wl~~~~~CP~CR~~l~~~ 152 (161)
+||..--.||.|+.++...
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp CSSSCCCBCSSSCCBCEEE
T ss_pred hHHhhheECCCCCCcCeEe
Confidence 3555556688887776543
No 175
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.46 E-value=7.2 Score=22.06 Aligned_cols=40 Identities=30% Similarity=0.537 Sum_probs=26.0
Q ss_pred CCccccccccccC--CCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 101 ESECCICLGVFED--GDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~--~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
...|+-|-..+.. ++.+. .. -+..||.+|. +|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFI-CF-QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeE-EE-CCcccCcccC--------ChhhCCCcCC
Confidence 4579999888774 23332 22 6788998885 3666666654
No 176
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=64.31 E-value=2.2 Score=25.78 Aligned_cols=46 Identities=28% Similarity=0.588 Sum_probs=27.7
Q ss_pred CCCCCCccccccccccCCCeeeecCCCC---CccchhhHHHHHcC----CCCCcc-ccc
Q 031354 97 DKEEESECCICLGVFEDGDKVKILPKCR---HCYHCECVDAWLSA----RSSCPL-CRN 147 (161)
Q Consensus 97 ~~~~~~~CaICL~~f~~~~~v~~lp~C~---H~FH~~Ci~~Wl~~----~~~CP~-CR~ 147 (161)
...+...| ||-... .++.|. -.+|. --||..|+. |.. +..||. |+.
T Consensus 22 ~~~~~~yC-iC~~~~-~g~MI~-CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVS-YGPMVA-CDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCC-SSSEEC-CCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCC-CCCEEE-ecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34456678 897642 345443 33354 579999986 332 346999 964
No 177
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=64.15 E-value=2.1 Score=24.71 Aligned_cols=42 Identities=21% Similarity=0.499 Sum_probs=27.7
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
....|+.|-..+.+++.+.. -+..||.+|.. |-.|+.+|...
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF~--------C~~C~~~L~~~ 47 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQC---DGRSFHRCCFL--------CMVCRKNLDST 47 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEE---TTEEEESSSEE--------CSSSCCEECSS
T ss_pred CCCcCcCcCccccCceeEEe---CCcccccccCc--------cCCCCCCCCCC
Confidence 35679999888877775533 56788887743 66676666543
No 178
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=63.38 E-value=0.54 Score=25.79 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=13.6
Q ss_pred HHHHcCCCCCccccccccCC
Q 031354 133 DAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 133 ~~Wl~~~~~CP~CR~~l~~~ 152 (161)
++|+..--.||.|+.++...
T Consensus 4 d~~lL~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLEER 23 (56)
T ss_dssp CCSCTTSCCCSSSCSCEEEE
T ss_pred CHHHHhheeCCCCCCcceec
Confidence 34566666799998886543
No 179
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=63.37 E-value=12 Score=18.38 Aligned_cols=16 Identities=0% Similarity=0.252 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 031354 33 VVFAVVLLVSFLFLYA 48 (161)
Q Consensus 33 ~l~~~~l~~~~~~~~~ 48 (161)
++..++++.++.+...
T Consensus 10 alivalIiaIVVWtiv 25 (36)
T 1pi7_A 10 ALVVAIIIAIVVWSIV 25 (36)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334333333333
No 180
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=62.90 E-value=1.7 Score=20.22 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=8.4
Q ss_pred CCCCcccccccc
Q 031354 139 RSSCPLCRNSLR 150 (161)
Q Consensus 139 ~~~CP~CR~~l~ 150 (161)
+-.||+|+..+.
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 346999987654
No 181
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=62.56 E-value=6.1 Score=22.72 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=13.4
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHH
Q 031354 19 HNFQIRGRTLFSIIVVFAVVLLVSFLFLYA 48 (161)
Q Consensus 19 ~~~~~~~~~i~ii~~l~~~~l~~~~~~~~~ 48 (161)
+.|..+-..+=+.-+++.++++++.++++.
T Consensus 10 dpF~YDY~tLRigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 10 ERFTYDYYRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHheeccchhHHHHHHHHHHHHH
Confidence 334434334444444444455444444443
No 182
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=61.53 E-value=1.8 Score=23.06 Aligned_cols=41 Identities=22% Similarity=0.509 Sum_probs=25.8
Q ss_pred cccccccCCCeeeecCCCCCccchhhHHHHHc---CCCCCccccc
Q 031354 106 ICLGVFEDGDKVKILPKCRHCYHCECVDAWLS---ARSSCPLCRN 147 (161)
Q Consensus 106 ICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 147 (161)
||-.....+..|.--. |+-=||..|+.---. .+-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~-C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTT-TCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCC-CCccccccccCCCcccCCCcEECcCCCC
Confidence 5766554445565444 888899999863221 2346999975
No 183
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=61.15 E-value=3.8 Score=19.22 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=18.7
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhH
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECV 132 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci 132 (161)
+.|+.|-...-..+.+. . =|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 47888877665544443 2 5688998883
No 184
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=60.98 E-value=6.4 Score=26.17 Aligned_cols=47 Identities=19% Similarity=0.390 Sum_probs=31.1
Q ss_pred CCCCcccccccccc--CCCeeeecCCCCCccchhhHHHHHcCC--CCCccccc
Q 031354 99 EEESECCICLGVFE--DGDKVKILPKCRHCYHCECVDAWLSAR--SSCPLCRN 147 (161)
Q Consensus 99 ~~~~~CaICL~~f~--~~~~v~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~ 147 (161)
.++..|++|...|. .+....-.. |.|.+|..|-. |.... ..|-+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~-C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLE-CSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTT-TCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCC-CCchhhccccc-ccCCCCcEeeHHHHH
Confidence 46789999999764 333333344 99999999972 44332 24777754
No 185
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=60.50 E-value=0.68 Score=26.66 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=11.9
Q ss_pred HHHcCCCCCccccccccCC
Q 031354 134 AWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 134 ~Wl~~~~~CP~CR~~l~~~ 152 (161)
+||..--.||.|+.++...
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCCCBCTTTCCBEEEE
T ss_pred hHHhhheECCCCCCcCEEe
Confidence 3455556688887776543
No 186
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=60.21 E-value=7.8 Score=19.01 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 031354 39 LLVSFLFLYARWFCRR 54 (161)
Q Consensus 39 l~~~~~~~~~~~~~~~ 54 (161)
++++++++.+|-..++
T Consensus 12 ~~~ifYFl~iRPQ~Kr 27 (37)
T 2rdd_B 12 FGLIFYFMILRPQQKR 27 (37)
T ss_dssp HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhhHHHH
Confidence 3333444444444433
No 187
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=60.19 E-value=0.67 Score=27.31 Aligned_cols=14 Identities=29% Similarity=0.809 Sum_probs=12.9
Q ss_pred CCCCccchhhHHHH
Q 031354 122 KCRHCYHCECVDAW 135 (161)
Q Consensus 122 ~C~H~FH~~Ci~~W 135 (161)
.|||.|+..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 49999999999998
No 188
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=59.89 E-value=0.59 Score=26.74 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=10.0
Q ss_pred HHcCCCCCccccccccC
Q 031354 135 WLSARSSCPLCRNSLRV 151 (161)
Q Consensus 135 Wl~~~~~CP~CR~~l~~ 151 (161)
||..--.||.|+.++..
T Consensus 4 ~LL~iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLVF 20 (68)
T ss_dssp CCEEECBCTTTCCBCEE
T ss_pred HHhhheECCCCCCcCeE
Confidence 44444567777776654
No 189
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.50 E-value=4.1 Score=22.45 Aligned_cols=16 Identities=25% Similarity=0.715 Sum_probs=10.0
Q ss_pred CCCccccccccCCCCC
Q 031354 140 SSCPLCRNSLRVDSAL 155 (161)
Q Consensus 140 ~~CP~CR~~l~~~~~~ 155 (161)
+.||-|+..|..++.-
T Consensus 7 k~CP~C~~~Iek~~GC 22 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGC 22 (60)
T ss_dssp CCCTTTCCCCSSCCSC
T ss_pred eECcCCCCeeEeCCCC
Confidence 4577777777665443
No 190
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=58.95 E-value=5.4 Score=27.76 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=16.0
Q ss_pred eeecCCCCCccchhhHHHHHcCCCCCcccccc
Q 031354 117 VKILPKCRHCYHCECVDAWLSARSSCPLCRNS 148 (161)
Q Consensus 117 v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 148 (161)
..+.+.|||++-. ..-..||+|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 4455569999542 122579999764
No 191
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.78 E-value=10 Score=20.81 Aligned_cols=39 Identities=21% Similarity=0.547 Sum_probs=24.6
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
....|+-|-..+.. +.+.. -+..||.+|. +|-.|+.+|.
T Consensus 4 ~~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 4 GSSGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred CcCCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 34578888777753 33332 4677887774 3667776665
No 192
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.39 E-value=9.5 Score=21.14 Aligned_cols=39 Identities=23% Similarity=0.476 Sum_probs=21.5
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSL 149 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 149 (161)
...|+.|-..+..++.+. .. =+..||.+|. +|-.|+.+|
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L 43 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGV-VA-LDRVFHVGCF--------VCSTCRAQL 43 (72)
T ss_dssp CCCCSSSCSCCCSSSCCE-EC-SSSEECTTTC--------BCSSSCCBC
T ss_pred CCCCccCCCccCCCceEE-EE-CCCeEcccCC--------cccccCCcC
Confidence 456777776665433222 12 4567776663 355666655
No 193
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=54.75 E-value=3.7 Score=31.13 Aligned_cols=12 Identities=25% Similarity=0.244 Sum_probs=3.2
Q ss_pred CCCCCCCCCccc
Q 031354 3 SQESQPFHWHYT 14 (161)
Q Consensus 3 ~~~~~~~~~~~~ 14 (161)
|+++.+..|.-.
T Consensus 323 SeWS~~~~~~t~ 334 (380)
T 3lb6_C 323 SEWSDKQCWEGE 334 (380)
T ss_dssp CCCCCC------
T ss_pred CCCCCCEEEeCC
Confidence 455555555544
No 194
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.07 E-value=8.3 Score=21.71 Aligned_cols=44 Identities=23% Similarity=0.488 Sum_probs=29.4
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
.....|+-|-..+..++.+... -|..||..|. +|-.|+.+|...
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCC
Confidence 4567899999988765544322 5678998774 366676666543
No 195
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=53.97 E-value=3 Score=27.85 Aligned_cols=23 Identities=17% Similarity=0.566 Sum_probs=15.1
Q ss_pred CCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 122 KCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 122 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
.|||.|-.. .....||.|-.++.
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBEE
T ss_pred CCCCcccCC------CCCCcCCCCCCcce
Confidence 388887543 22347999987754
No 196
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=53.84 E-value=8.7 Score=25.91 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=16.4
Q ss_pred eeeecCCCCCccchhhHHHHHcCCCCCcccccc
Q 031354 116 KVKILPKCRHCYHCECVDAWLSARSSCPLCRNS 148 (161)
Q Consensus 116 ~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 148 (161)
...+.+.|||++-. ..-..||+|..+
T Consensus 137 ~~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred CeeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 34455669998752 222379999754
No 197
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=52.40 E-value=22 Score=18.06 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 031354 28 LFSIIVVFAVVLLV 41 (161)
Q Consensus 28 i~ii~~l~~~~l~~ 41 (161)
..++..++++++++
T Consensus 10 ~~Iv~gvi~~ivli 23 (43)
T 2k9j_B 10 LVVLLSVMGAILLI 23 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH
Confidence 33333333333333
No 198
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=51.70 E-value=5.8 Score=24.24 Aligned_cols=11 Identities=27% Similarity=0.966 Sum_probs=10.1
Q ss_pred cchhhHHHHHc
Q 031354 127 YHCECVDAWLS 137 (161)
Q Consensus 127 FH~~Ci~~Wl~ 137 (161)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 199
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=51.65 E-value=5.9 Score=24.28 Aligned_cols=11 Identities=18% Similarity=0.909 Sum_probs=10.1
Q ss_pred cchhhHHHHHc
Q 031354 127 YHCECVDAWLS 137 (161)
Q Consensus 127 FH~~Ci~~Wl~ 137 (161)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 200
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.60 E-value=10 Score=20.97 Aligned_cols=41 Identities=20% Similarity=0.449 Sum_probs=26.6
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
...|+.|-..+..++.+... -+..||.+|. +|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCC
Confidence 35788898888776543222 5678887774 36666666643
No 201
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=51.53 E-value=14 Score=23.25 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=13.3
Q ss_pred CCccchhhHHHHHcCCCCCcccccccc
Q 031354 124 RHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 124 ~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
|..|+..|..+-+..+..|..|..+|.
T Consensus 51 g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 51 GRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred CEEeecCchhhhCCCccChhhcCCccC
Confidence 444555555554433335555555554
No 202
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.89 E-value=16 Score=20.90 Aligned_cols=42 Identities=21% Similarity=0.496 Sum_probs=30.8
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
......|+-|-..+.+++.+.. -+..||.+|. +|-.|+.+|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 4456789999998887776654 4678998774 3777777765
No 203
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=50.80 E-value=7 Score=21.34 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=26.9
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
...|+-|-..+. ++.+ .. -|..||..|. +|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCcC--------EECCCCCCCCC
Confidence 457999988877 4433 33 6788998774 37778777754
No 204
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=50.67 E-value=7.9 Score=26.11 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=19.8
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
..|..|-..+..+. . .. =|..|+..|..+- -...|..|...|..
T Consensus 88 F~C~~C~~~L~~~~-f--~~-~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 88 LKCSDCHVPLAERC-F--SR-GESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp TSCTTTCCCCSSCC-E--EE-TTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred CccCCCCCccCCCc-e--eE-CCEeeecCccccc--cccccccCCCccCC
Confidence 35555555554432 1 11 3445555554431 12345555555543
No 205
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=50.64 E-value=1.4 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.696 Sum_probs=18.3
Q ss_pred ecCCCCCccchhhHHHHHcCC--CCCcc
Q 031354 119 ILPKCRHCYHCECVDAWLSAR--SSCPL 144 (161)
Q Consensus 119 ~lp~C~H~FH~~Ci~~Wl~~~--~~CP~ 144 (161)
.-|.|+|.|+..|-..|=..| .+|..
T Consensus 45 ~C~~C~~~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp ECTTTCCEECSSSCSBCCTTTTTSCHHH
T ss_pred EeCCCCCccccccCCchhhcCCCCChHH
Confidence 455699999999998884433 34544
No 206
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.75 E-value=22 Score=20.16 Aligned_cols=42 Identities=17% Similarity=0.345 Sum_probs=28.2
Q ss_pred CCCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 98 KEEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
......|+-|-..+. ++.+. . -|..||.+|. +|-.|+.+|..
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLI--F-KNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCC--C-SSSCCCTTTS--------BCSSSCCBCCT
T ss_pred ccCCCCCccCCCEec-ceEEE--E-CcceeCCCCC--------EeCCCCCccCC
Confidence 344578999988877 34332 2 6788888774 47777777654
No 207
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.04 E-value=17 Score=21.22 Aligned_cols=41 Identities=22% Similarity=0.507 Sum_probs=28.1
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
.....|+-|-..+. ++.+. . -+..||.+|. +|-.|+.+|..
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLV--A-LGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEE--E-TTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEec-ceEEE--E-CCccccccCC--------ccCCCCCCCCC
Confidence 34568999988884 44443 3 6788998775 46777777654
No 208
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.05 E-value=12 Score=21.13 Aligned_cols=38 Identities=24% Similarity=0.557 Sum_probs=25.4
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
...|+-|-..+.. +.+ .. =+..||.+|. +|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~-~~v--~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQ-GGV--TY-RDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCS-CCE--ES-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCcCCCCCCEecC-cEE--EE-CCchhhhhhC--------CcccCCCcCC
Confidence 3578888887764 333 33 6788888774 4677777764
No 209
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.30 E-value=14 Score=21.09 Aligned_cols=41 Identities=20% Similarity=0.521 Sum_probs=28.3
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
...|+.|-..+..++.+.. . =+..||.+|. +|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE-Y-KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE-C-SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEE-E-CccccccccC--------chhhCCCccCC
Confidence 3689999998887665422 2 5788998775 36667766654
No 210
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.05 E-value=22 Score=22.17 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=32.7
Q ss_pred CccccccccccC-CCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 102 SECCICLGVFED-GDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 102 ~~CaICL~~f~~-~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
..|+.|-..+.+ +... ... =|..|+..|..+-+..+..|-.|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~-~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeE-EEE-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 367777777653 2222 222 56778888988877766689999888874
No 211
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=44.81 E-value=21 Score=19.95 Aligned_cols=41 Identities=22% Similarity=0.480 Sum_probs=28.3
Q ss_pred CCccccccccccC---C-CeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 101 ESECCICLGVFED---G-DKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 101 ~~~CaICL~~f~~---~-~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
...|+-|-..+.. + +.+.. =+..||..|. +|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY---EGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE---TTEEEETTTC--------BCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeEEE---CcceeCcccC--------EehhcCCCCCCC
Confidence 3679999888874 2 33332 5688998874 478888887643
No 212
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=44.56 E-value=5.8 Score=31.55 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=30.7
Q ss_pred CCCCcccccccccc-CCCeeeecCCCCCccchhhHHHHHc-----CCCCCcccccc
Q 031354 99 EEESECCICLGVFE-DGDKVKILPKCRHCYHCECVDAWLS-----ARSSCPLCRNS 148 (161)
Q Consensus 99 ~~~~~CaICL~~f~-~~~~v~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 148 (161)
.+...| ||-..+. .+..|.-- .|.-=||..|+.---. .+-.||.|+..
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECD-ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBT-TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEcc-CCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 344567 8988765 34455444 4887899999853211 13469999754
No 213
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=44.42 E-value=23 Score=22.20 Aligned_cols=39 Identities=23% Similarity=0.518 Sum_probs=28.7
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
...|+-|-..+.....+.. -+..||.+|. +|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEccccc--------CcCcCCCccc
Confidence 4689999988875544433 6788998883 4788888875
No 214
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=43.66 E-value=15 Score=21.82 Aligned_cols=30 Identities=20% Similarity=0.457 Sum_probs=20.8
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhH
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECV 132 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci 132 (161)
...|+.|-..+..++.+... =+..||.+|.
T Consensus 66 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 95 (101)
T 2cup_A 66 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF 95 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEES--SSCEEETTTC
T ss_pred CCccccCCCccccCCeEEEe--CCcchHHhCC
Confidence 45788898888766644332 5788898774
No 215
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.94 E-value=38 Score=18.78 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=15.6
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhH
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECV 132 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci 132 (161)
...|+-|-..+.. +.+ .. -+..||.+|.
T Consensus 5 ~~~C~~C~~~I~~-~~v--~a-~~~~wH~~CF 32 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVL--EA-GEKHYHPSCA 32 (73)
T ss_dssp CCSCSSSCCCCSS-CCB--CC-SSCCBCTTTS
T ss_pred cCCcccCCCEecC-eeE--Ee-CCCCCCCCcC
Confidence 3467777666653 222 22 5667777663
No 216
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=42.57 E-value=12 Score=25.72 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=15.0
Q ss_pred eecCCCCCccchhhHHHHHcCCCCCcccccc
Q 031354 118 KILPKCRHCYHCECVDAWLSARSSCPLCRNS 148 (161)
Q Consensus 118 ~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 148 (161)
.+.+.|||++-.+ ..-..||+|..+
T Consensus 156 ~~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 156 WRCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EEETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EEECCCCCEeeCC------CCCCCCCCCcCC
Confidence 3444588886522 112379999765
No 217
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=42.02 E-value=31 Score=16.74 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=14.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH
Q 031354 16 LDDHNFQIRGRTLFSIIVVFAVVLLV 41 (161)
Q Consensus 16 ~~~~~~~~~~~~i~ii~~l~~~~l~~ 41 (161)
.+....+.+.+.+++-+++++++.++
T Consensus 5 pn~q~VELNRTSLy~GLLlifvlavl 30 (37)
T 3arc_L 5 PNRQPVELNRTSLYLGLLLILVLALL 30 (37)
T ss_dssp TTCCCBCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceechhhHHHHHHHHHHHHHH
Confidence 34455566667777665555554443
No 218
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=40.68 E-value=35 Score=16.96 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 031354 27 TLFSIIVVFAVVLLVSFLFL 46 (161)
Q Consensus 27 ~i~ii~~l~~~~l~~~~~~~ 46 (161)
++++++.+.+.++..++++.
T Consensus 12 i~lII~~vmaGiIG~IllI~ 31 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLIS 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333
No 219
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.57 E-value=16 Score=21.30 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 99 EEESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
.....|+-|-+.+.. +.+ .. -+..||.+|. +|-.|+..|..
T Consensus 23 ~~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVV--KA-RDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCE--ES-SSCEECTTTC--------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc-cEE--EE-CCceECccCC--------EecCCCCCCCC
Confidence 445689999888774 333 23 6788998884 36677776654
No 220
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=40.41 E-value=18 Score=24.43 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=11.6
Q ss_pred CCccchhhHHHHHcCCCCCcccccccc
Q 031354 124 RHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 124 ~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
|..|+..|..+-+..+..|+.|...|.
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CccccccccccccccCCccccCCCccc
Confidence 344444444443332224555554443
No 221
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.20 E-value=20 Score=20.94 Aligned_cols=41 Identities=20% Similarity=0.588 Sum_probs=28.1
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
....|+-|-..+..++.+. . -+..||.+|.. |=.|+.+|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF~--------C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL--A-NQQVFHISCFR--------CSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE--C-SSSEEETTTCB--------CTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeEE--E-CCCEECCCCCe--------eCCCCCCCCC
Confidence 4568999998888766553 3 67888988743 5556555544
No 222
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=39.54 E-value=9.9 Score=23.85 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=15.3
Q ss_pred CCCCccchhhHHHHHcCCC-CCccccccc
Q 031354 122 KCRHCYHCECVDAWLSARS-SCPLCRNSL 149 (161)
Q Consensus 122 ~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l 149 (161)
.|||.|-.+ .... .||.|.++.
T Consensus 78 ~CG~~~e~~------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 78 DCSHVFKPN------ALDYGVCEKCHSKN 100 (119)
T ss_dssp SSSCEECSC------CSTTCCCSSSSSCC
T ss_pred CCCCEEeCC------CCCCCcCccccCCC
Confidence 389988752 3346 799997763
No 223
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=38.74 E-value=22 Score=19.23 Aligned_cols=38 Identities=24% Similarity=0.578 Sum_probs=25.6
Q ss_pred CccccccccccCC-CeeeecCCCCCccc--hhhHHHHHcCCCCCcccccccc
Q 031354 102 SECCICLGVFEDG-DKVKILPKCRHCYH--CECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 102 ~~CaICL~~f~~~-~~v~~lp~C~H~FH--~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
..|+-|-..+..+ +.+.. -|..|| .+|. +|=.|+.+|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a---~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY---NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE---TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE---CCCccCCCCCCE--------ECCCCCCcCC
Confidence 4688888888764 33332 578899 8774 4667777764
No 224
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=38.46 E-value=14 Score=23.16 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=20.8
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhHHHHHc
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLS 137 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~ 137 (161)
..|..|-..+..++..... =|..||..|..+.+.
T Consensus 37 F~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWTK 70 (123)
T ss_dssp CBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHHH
T ss_pred CccccCCCCCCCCCcEEee--CCEEEcHHHhHHHhc
Confidence 4667776666555544332 466777777777663
No 225
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=38.22 E-value=36 Score=16.41 Aligned_cols=6 Identities=50% Similarity=0.922 Sum_probs=2.3
Q ss_pred HHHHHh
Q 031354 49 RWFCRR 54 (161)
Q Consensus 49 ~~~~~~ 54 (161)
.|+.+|
T Consensus 29 ywrgrr 34 (40)
T 2l9u_A 29 YWRGRR 34 (40)
T ss_dssp HHHHHH
T ss_pred EEcccc
Confidence 343433
No 226
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=38.05 E-value=1.5 Score=19.16 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=8.9
Q ss_pred ccchhhHHHHHc
Q 031354 126 CYHCECVDAWLS 137 (161)
Q Consensus 126 ~FH~~Ci~~Wl~ 137 (161)
.||..|-.+||-
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 478888888864
No 227
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=37.97 E-value=7.6 Score=23.70 Aligned_cols=41 Identities=24% Similarity=0.610 Sum_probs=24.2
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
+..|+.|-.+++-.. ++.++..|-.. +.....||-|.++|.
T Consensus 32 ~~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHH
Confidence 368999987765322 22234444332 344567999988874
No 228
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.79 E-value=8 Score=23.85 Aligned_cols=12 Identities=33% Similarity=1.079 Sum_probs=8.1
Q ss_pred CCCCcccccccc
Q 031354 139 RSSCPLCRNSLR 150 (161)
Q Consensus 139 ~~~CP~CR~~l~ 150 (161)
...||+|-+++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 345888877665
No 229
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=37.76 E-value=8.3 Score=17.28 Aligned_cols=9 Identities=33% Similarity=1.339 Sum_probs=5.6
Q ss_pred CCccccccc
Q 031354 141 SCPLCRNSL 149 (161)
Q Consensus 141 ~CP~CR~~l 149 (161)
.||+|.+-+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 477776544
No 230
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=36.32 E-value=34 Score=17.82 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=12.6
Q ss_pred CCCCccccccccCCCCCCC
Q 031354 139 RSSCPLCRNSLRVDSALPS 157 (161)
Q Consensus 139 ~~~CP~CR~~l~~~~~~~~ 157 (161)
.-.||.|-..+...--.|.
T Consensus 23 ~IrCpyCGyrii~KvR~p~ 41 (48)
T 4ayb_P 23 GVRCPYCGYKIIFMVRKPT 41 (48)
T ss_dssp SSCCTTTCCSCEECCCCCS
T ss_pred CcccCccCcEEEEEecCCc
Confidence 3469999877776654443
No 231
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=34.99 E-value=31 Score=23.27 Aligned_cols=39 Identities=26% Similarity=0.506 Sum_probs=23.9
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
...|+.|-..+.+++.+.. -+..||.+|. +|-.|+.+|.
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 153 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSCF--------RCAKCGKSLE 153 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTTC--------BCTTTCCBCC
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhcC--------CccccCCCCC
Confidence 4568888887776665542 4567777663 2555555553
No 232
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=34.26 E-value=3 Score=31.12 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=30.1
Q ss_pred CCCCccccccccccCCCeeee--cCCCC--CccchhhHHHHHcCCCCCcccccc
Q 031354 99 EEESECCICLGVFEDGDKVKI--LPKCR--HCYHCECVDAWLSARSSCPLCRNS 148 (161)
Q Consensus 99 ~~~~~CaICL~~f~~~~~v~~--lp~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~ 148 (161)
.....|++|=..-..+ .++. .. =| |.+|.-|-.+|--.+..||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~-~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKE-TGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC-----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCC-CCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5678999997654322 2221 01 23 456666777787788899999654
No 233
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=32.92 E-value=66 Score=17.86 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=4.6
Q ss_pred chHHHHHHHHHH
Q 031354 26 RTLFSIIVVFAV 37 (161)
Q Consensus 26 ~~i~ii~~l~~~ 37 (161)
+-++.++..+++
T Consensus 27 tplMgv~m~Lf~ 38 (65)
T 3arc_H 27 TPLMAVFMGLFL 38 (65)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 334444333333
No 234
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.57 E-value=19 Score=20.45 Aligned_cols=40 Identities=23% Similarity=0.573 Sum_probs=26.9
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccC
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
....|+-|-..+.+ ..+. . -+..||.+|. +|-.|+.+|..
T Consensus 14 ~~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 2dlo_A 14 TLEKCATCSQPILD-RILR--A-MGKAYHPGCF--------TCVVCHRGLDG 53 (81)
T ss_dssp SCCBCTTTCCBCCS-CCEE--E-TTEEECTTTC--------BCSSSCCBCTT
T ss_pred CCCccccCCCeecc-eeEE--E-CCccccHHhc--------CcccCCCccCC
Confidence 45679999888763 3332 2 5688888774 47788777753
No 235
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.14 E-value=30 Score=18.81 Aligned_cols=39 Identities=28% Similarity=0.556 Sum_probs=25.4
Q ss_pred CCCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 100 EESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 100 ~~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
....|+-|-..+.. +.+ .. -+..||.+|. +|-.|+.+|.
T Consensus 4 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 4 GSSGCVQCKKPITT-GGV--TY-REQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CCCBCSSSCCBCCS-SEE--ES-SSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCCcccCCeecc-ceE--EE-CccccCCCCC--------ccCCCCCcCC
Confidence 34578888887764 333 23 5678887774 3667777664
No 236
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.95 E-value=22 Score=20.03 Aligned_cols=40 Identities=20% Similarity=0.436 Sum_probs=26.6
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCccccccccCC
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVD 152 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 152 (161)
...|+-|-..+.+ +.+.. -+..||.+|. +|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~-~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLSA---MDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCEEE---TTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeEEE---CCCeEecCcC--------ChhhCCCCCCCC
Confidence 3578888888775 33432 5678888774 377777777543
No 237
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.50 E-value=18 Score=21.27 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=5.6
Q ss_pred ccccccccccC
Q 031354 103 ECCICLGVFED 113 (161)
Q Consensus 103 ~CaICL~~f~~ 113 (161)
.|+.|-.++..
T Consensus 4 ~CP~C~~~l~~ 14 (81)
T 2jrp_A 4 TCPVCHHALER 14 (81)
T ss_dssp CCSSSCSCCEE
T ss_pred CCCCCCCcccc
Confidence 45555555443
No 238
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=29.52 E-value=44 Score=20.64 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=12.8
Q ss_pred CCCccchhhHHHHHcCCCCCccccccccC
Q 031354 123 CRHCYHCECVDAWLSARSSCPLCRNSLRV 151 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 151 (161)
=|..|+..|..+- ....|+.|..+|..
T Consensus 49 ~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 49 NDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp TTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCEEechHHhCcC--cCccCcccCCcCCc
Confidence 3445555555442 22345555555543
No 239
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=29.05 E-value=12 Score=23.94 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=20.3
Q ss_pred CCCccchhhHHHHHcC-----CCCCcccccc
Q 031354 123 CRHCYHCECVDAWLSA-----RSSCPLCRNS 148 (161)
Q Consensus 123 C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~ 148 (161)
|-|+++..++..|-.. ...|+.|+..
T Consensus 7 C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 7 CRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp CSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CcChhhccccccccccccCCCCCcCcccccc
Confidence 9999999999888431 2469999764
No 240
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=27.65 E-value=95 Score=18.15 Aligned_cols=40 Identities=18% Similarity=0.459 Sum_probs=27.4
Q ss_pred CCccccccccccCC---CeeeecCCCCCccchhhHHHHHcCCCCCcc
Q 031354 101 ESECCICLGVFEDG---DKVKILPKCRHCYHCECVDAWLSARSSCPL 144 (161)
Q Consensus 101 ~~~CaICL~~f~~~---~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 144 (161)
...|.+|-+..... ...|-+= |+-..|.+|.++. ...|++
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~W-Cq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLW-CKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESS-SCCEECHHHHHHC---CSCBCC
T ss_pred CCEeCCCCCEeCCccCCCCCCCcc-cChhHHHHHHHhc---cCcCCC
Confidence 46899997764321 3445555 8889999999885 344664
No 241
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=27.39 E-value=13 Score=31.76 Aligned_cols=23 Identities=13% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031354 30 SIIVVFAVVLLVSFLFLYARWFC 52 (161)
Q Consensus 30 ii~~l~~~~l~~~~~~~~~~~~~ 52 (161)
++++|++++++++++++++.++|
T Consensus 707 ii~il~~~~~ll~~~ll~~~~~~ 729 (880)
T 1q55_A 707 ILVILGSVLALLILFLLLLLFLK 729 (880)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344444444433333333333
No 242
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.35 E-value=35 Score=19.24 Aligned_cols=40 Identities=20% Similarity=0.487 Sum_probs=25.6
Q ss_pred CCccccccccccCCCeeeecCCCCCccchhhHHHHHcCCCCCcccccccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 150 (161)
...|+-|-..+..++.+.. . =+..||..|. +|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELF-Y-EDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCC-C-SSCCCBTTTS--------BCTTTCCBCS
T ss_pred CCcCccCCCccccCcEEEE-e-CCccccccCC--------eecCCCCccC
Confidence 3479999888874333322 2 4678888774 3666766665
No 243
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=25.32 E-value=58 Score=14.75 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031354 30 SIIVVFAVVLLVSFLFLYAR 49 (161)
Q Consensus 30 ii~~l~~~~l~~~~~~~~~~ 49 (161)
+|..++..+-++.+-+.+++
T Consensus 8 viaglvalltflafgfwlfk 27 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444333333333343333
No 244
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.78 E-value=30 Score=19.39 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=10.1
Q ss_pred CCCCccccccccCCC
Q 031354 139 RSSCPLCRNSLRVDS 153 (161)
Q Consensus 139 ~~~CP~CR~~l~~~~ 153 (161)
+.-||.||......+
T Consensus 49 kKycp~c~kHtlhkE 63 (66)
T 3bbo_3 49 RKFCPYCYKHTIHGE 63 (66)
T ss_dssp CCCCCSSSSCCCCCC
T ss_pred EccCCCCCCeeeEEe
Confidence 346999987765543
No 245
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.75 E-value=33 Score=18.37 Aligned_cols=39 Identities=21% Similarity=0.488 Sum_probs=19.2
Q ss_pred ccccccccccC--CCeeeecCCCCCccchhhHHHHHcCCCCCcccccc
Q 031354 103 ECCICLGVFED--GDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNS 148 (161)
Q Consensus 103 ~CaICL~~f~~--~~~v~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 148 (161)
.|.+|-..|.. |+.-.-++ =|.-|-. |-..-+||+|...
T Consensus 5 ~C~vCGyvYd~~~Gdp~~gi~-pGt~fe~------lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPDDGVN-PGTDFKD------IPDDWVCPLCGVG 45 (54)
T ss_dssp EETTTCCEECTTTCBGGGTBC-TTCCGGG------SCTTCBCTTTCCB
T ss_pred ECCCCCeEECCCcCCcccCcC-CCCChhH------CCCCCcCcCCCCc
Confidence 56666655543 33222233 3444332 1223579999764
No 246
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=24.03 E-value=41 Score=19.99 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=14.3
Q ss_pred CCCccccccccCCCCCCCCC
Q 031354 140 SSCPLCRNSLRVDSALPSIT 159 (161)
Q Consensus 140 ~~CP~CR~~l~~~~~~~~~~ 159 (161)
..||.|...+..+..++...
T Consensus 49 ~~CpYCg~~y~~~~~~~~~e 68 (87)
T 2jz8_A 49 KICPYCSTLYRYDPSLSYNQ 68 (87)
T ss_dssp ECCTTTCCEEECCTTSCTTC
T ss_pred EECCCCCCEeEcCCCCCcCC
Confidence 36999988887776665543
No 247
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=23.96 E-value=19 Score=19.49 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=4.5
Q ss_pred CCCccccc
Q 031354 140 SSCPLCRN 147 (161)
Q Consensus 140 ~~CP~CR~ 147 (161)
..||.|..
T Consensus 12 ~~Cp~C~~ 19 (58)
T 1dl6_A 12 VTCPNHPD 19 (58)
T ss_dssp CSBTTBSS
T ss_pred ccCcCCCC
Confidence 35666644
No 248
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=23.96 E-value=57 Score=20.10 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=17.6
Q ss_pred CCccccccccccCCCeeeecCCCCCccc
Q 031354 101 ESECCICLGVFEDGDKVKILPKCRHCYH 128 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~lp~C~H~FH 128 (161)
...|..|... ++.-.-|. |||+++
T Consensus 24 ~~~C~~C~~~---~~~W~CL~-CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLS-CYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETT-TCCEEE
T ss_pred CCcCccccCC---CCeeeeee-cCcccc
Confidence 4579999875 34455677 999986
No 249
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=23.65 E-value=20 Score=20.71 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=0.0
Q ss_pred HcCCCCCcccccccc
Q 031354 136 LSARSSCPLCRNSLR 150 (161)
Q Consensus 136 l~~~~~CP~CR~~l~ 150 (161)
..+++.||+|+..+.
T Consensus 5 ~~r~k~C~fc~~~~~ 19 (75)
T 3i1m_R 5 FRRRKFCRFTAEGVQ 19 (75)
T ss_dssp ---------------
T ss_pred CCCCCCCCcccCCCC
Confidence 456678999987764
No 250
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=22.30 E-value=22 Score=20.12 Aligned_cols=11 Identities=27% Similarity=0.918 Sum_probs=8.9
Q ss_pred CCCcccccccc
Q 031354 140 SSCPLCRNSLR 150 (161)
Q Consensus 140 ~~CP~CR~~l~ 150 (161)
..||+|..++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 45999998875
No 251
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=22.10 E-value=37 Score=20.00 Aligned_cols=33 Identities=18% Similarity=0.583 Sum_probs=20.7
Q ss_pred CCccccccccccCCCeeee-cCCCCCccchhhHHH
Q 031354 101 ESECCICLGVFEDGDKVKI-LPKCRHCYHCECVDA 134 (161)
Q Consensus 101 ~~~CaICL~~f~~~~~v~~-lp~C~H~FH~~Ci~~ 134 (161)
...|.||-.. ..|..|.- .++|.-.||..|-.+
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 4579999542 12444432 223888999999765
No 252
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=21.41 E-value=35 Score=21.96 Aligned_cols=27 Identities=22% Similarity=0.549 Sum_probs=18.8
Q ss_pred CCccccccccccCCC-eeeecCCCCCcc
Q 031354 101 ESECCICLGVFEDGD-KVKILPKCRHCY 127 (161)
Q Consensus 101 ~~~CaICL~~f~~~~-~v~~lp~C~H~F 127 (161)
-..|+-|-.+|.-.+ ...+.|-|+|-+
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCCcceEecCCeEECCcccccc
Confidence 467999999887543 344666688873
No 253
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.89 E-value=1.2e+02 Score=16.74 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=17.4
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031354 21 FQIRGRTLFSIIVVFAVVLLVSFLFLYARWFCR 53 (161)
Q Consensus 21 ~~~~~~~i~ii~~l~~~~l~~~~~~~~~~~~~~ 53 (161)
++......+.+...+.....+.+.++..++...
T Consensus 29 F~~~nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~ 61 (63)
T 2y69_L 29 FSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLL 61 (63)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcchhHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 344455544444444555555566666666543
No 254
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.78 E-value=46 Score=18.69 Aligned_cols=27 Identities=30% Similarity=0.691 Sum_probs=19.1
Q ss_pred CccccccccccCCCeeeecCCCCCccchhhH
Q 031354 102 SECCICLGVFEDGDKVKILPKCRHCYHCECV 132 (161)
Q Consensus 102 ~~CaICL~~f~~~~~v~~lp~C~H~FH~~Ci 132 (161)
..|+-|-..+. ++.+. . -+..||.+|.
T Consensus 16 ~~C~~C~~~I~-~~~v~--a-~~~~wH~~CF 42 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--A-LGKTYHPDCF 42 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--E-TTEEECTTTS
T ss_pred CcCccccCEec-cceEE--E-CCceeCccCC
Confidence 48999988877 34443 2 5788998875
No 255
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.64 E-value=54 Score=18.93 Aligned_cols=34 Identities=18% Similarity=0.438 Sum_probs=21.8
Q ss_pred CCCCCccccccccccC-CCeeeecCCCCCccchhh
Q 031354 98 KEEESECCICLGVFED-GDKVKILPKCRHCYHCEC 131 (161)
Q Consensus 98 ~~~~~~CaICL~~f~~-~~~v~~lp~C~H~FH~~C 131 (161)
...+..|+.|.+.|-- .+.-.+-+.|.|..+.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 5677899999998763 111112234778777766
No 256
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.63 E-value=29 Score=17.91 Aligned_cols=9 Identities=44% Similarity=1.043 Sum_probs=6.8
Q ss_pred CCCcccccc
Q 031354 140 SSCPLCRNS 148 (161)
Q Consensus 140 ~~CP~CR~~ 148 (161)
-.||+|...
T Consensus 31 w~CP~Cg~~ 39 (46)
T 6rxn_A 31 WCCPVCGVS 39 (46)
T ss_dssp CBCTTTCCB
T ss_pred CcCcCCCCc
Confidence 379999764
No 257
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=20.60 E-value=31 Score=21.25 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=24.6
Q ss_pred cccccccccCCCeeeecCCCCCccchhhHHHHHcC--------CCCCccccc
Q 031354 104 CCICLGVFEDGDKVKILPKCRHCYHCECVDAWLSA--------RSSCPLCRN 147 (161)
Q Consensus 104 CaICL~~f~~~~~v~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~ 147 (161)
|..|..+...++.+..-..|...||..|...-... ...||.|+.
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 33333333333334444459999999998643211 135999974
Done!