BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031355
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 22 ALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV 81
A +WTL+ ++T + FK++++H + V+ G V+ + DF+
Sbjct: 30 AFEWTLEKIVRSNTSD--FKILLLHVQ-----VVDEDGFDDVDSIYASPEDFR------- 75
Query: 82 EEAKEICSSKSVH--DFVVE------------VVEGDARNILCEAVEKHHASILVVGSHG 127
+ ++ +K +H +F V + GD ++++C+ V++ LVVGS G
Sbjct: 76 -DXRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRG 134
Query: 128 YGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156
G ++ +G+VS +C HA C V +KR
Sbjct: 135 LGRFQKVFVGTVSAFCVKHAECPVXTIKR 163
>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
Length = 309
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 9 MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPH 68
++VGIDDS + A++W A L +VHA SP L P VL
Sbjct: 22 IIVGIDDSPAAQVAVRWA-----ARDAELRKIPLTLVHAV-SPEVATWLEVPLPPGVLRW 75
Query: 69 VDSDFKKI---AARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGS 125
+ + A +VVE+A +VH E+V A L + A ++VVG
Sbjct: 76 QQDHGRHLIDDALKVVEQASLRAGPPTVHS---EIVPAAAVPTLVDM--SKDAVLMVVGC 130
Query: 126 HGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154
G G +LGSVS HAHC V+I+
Sbjct: 131 LGSGRWPGRLLGSVSSGLLRHAHCPVVII 159
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 114 EKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKT 159
A ++VVGS G G ++GSV + A A V++ + T
Sbjct: 264 RSEEAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARESLT 309
>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
Tuberculosis
Length = 305
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 64/149 (42%), Gaps = 14/149 (9%)
Query: 9 MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPH 68
++VGIDDS + A++W A L +VHA SP L P VL
Sbjct: 10 IIVGIDDSPAAQVAVRWA-----ARDAELRKIPLTLVHAV-SPEVATWLEVPLPPGVLRW 63
Query: 69 VDSDFKKI---AARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGS 125
+ + A +VVE+A +VH E+V A L + A + VVG
Sbjct: 64 QQDHGRHLIDDALKVVEQASLRAGPPTVHS---EIVPAAAVPTLVDX--SKDAVLXVVGC 118
Query: 126 HGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154
G G +LGSVS HAHC V+I+
Sbjct: 119 LGSGRWPGRLLGSVSSGLLRHAHCPVVII 147
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 114 EKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKT 159
A ++VVGS G G ++GSV + A A V++ + T
Sbjct: 252 RSEEAQLVVVGSRGRGGYAGXLVGSVGETVAQLARTPVIVARESLT 297
>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
Thermus Themophilus Hb8
pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 137
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSV 139
V+EEA+ + ++E V +A + +A A ++V+G+ G GA+ LGS
Sbjct: 65 VLEEARALTGVPKEDALLLEGVPAEA---ILQAARAEKADLIVMGTRGLGALGSLFLGSQ 121
Query: 140 SDYCAHHAHCTVMIVK 155
S A C V++V+
Sbjct: 122 SQRVVAEAPCPVLLVR 137
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 45 VHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSS--KSVHD--FVVE- 99
+ R S ++G+AG V+ ++ ++ EEAK + K + D F V+
Sbjct: 47 IKKRDIFSLLLGVAGLN-----KSVEEFENELKNKLTEEAKNKMENIKKELEDVGFKVKD 101
Query: 100 -VVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPK 158
+V G + + E I+++GSHG +K +LGSV++ ++ V++VKR
Sbjct: 102 IIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRKN 161
Query: 159 T 159
+
Sbjct: 162 S 162
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea
Length = 150
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 49 PSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNI 108
P P G A P E D +K ++ +I ++ + +V G+ R
Sbjct: 47 PXPDTPYGTAIPLDTETTYDAXLDVEK------QKLSQIGNTLGIDPAHRWLVWGEPREE 100
Query: 109 LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155
+ E+ + ++VVGSHG + +LGS ++ H+A C V+ V+
Sbjct: 101 IIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea With Amp Bound
Length = 150
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 100 VVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155
+V G+ R + E+ + ++VVGSHG + +LGS ++ H+A C V+ V+
Sbjct: 92 LVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 70 DSDFKKIAARVVEEAKEICSSKSV-HDFVVEVVEGD--ARNILCEAVEKHHASILVVGSH 126
D K A + +AK + V D V V+G +R I+ A K ++V+G+
Sbjct: 61 DDALKDYATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFA-RKRECDLVVIGAQ 119
Query: 127 GYGAIKRAVLGSVSDYCAHHAHCTVMIV 154
G K +LGSV+ A AHC V++V
Sbjct: 120 GTNGDKSLLLGSVAQRVAGSAHCPVLVV 147
>pdb|3OLQ|A Chain A, The Crystal Structure Of A Universal Stress Protein E From
Proteus Mirabilis Hi4320
Length = 319
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 66 LPHVDSDFKKIAARV--VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVV 123
LP D + A R + KE+ S+ + V EG ++ + E+ +A I+V+
Sbjct: 213 LPDFDPNLYNNALRGQHLIAXKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVL 272
Query: 124 GSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155
G G + A LG+ ++ H C ++ +K
Sbjct: 273 GILGRTGLSAAFLGNTAEQLIDHIKCDLLAIK 304
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 82 EEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKH-HASILVVGSHGYGAIKRAVLGSVS 140
+ ++ ++ S + E+ G ++ + + ++H ++V+G+ G + R +GS +
Sbjct: 72 RQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTT 131
Query: 141 DYCAHHAHCTVMIVK 155
Y HA C V++++
Sbjct: 132 SYVVDHAPCNVIVIR 146
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 64 EVLPHVDSDFKKIAARVVEEAKEICSS-KSVHDFVVEV------VEGDA-RNILCEAVEK 115
EV +D + KKI E AKEI + D +VE+ +EGD R IL E EK
Sbjct: 403 EVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFEK 462
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 64 EVLPHVDSDFKKIAARVVEEAKEICSS-KSVHDFVVEV------VEGDA-RNILCEAVEK 115
EV +D + KKI E AKEI + D +VE+ +EGD R IL E EK
Sbjct: 403 EVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFEK 462
>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
Length = 294
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 61 GAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASI 120
G +++ ++D +K + E A++I ++ + + GD + +A E + S
Sbjct: 69 GGIDIDHYIDEXSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEIIKASENY--SF 126
Query: 121 LVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155
+ GS G K+ +LGSVS+ H + V I K
Sbjct: 127 IAXGSRGASKFKKILLGSVSEGVLHDSKVPVYIFK 161
>pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
Length = 163
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 109 LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154
L ++ A +LVVG+ G I +LGSV + A V+IV
Sbjct: 111 LVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156
>pdb|3E9A|A Chain A, Crystal Structure Of 2-dehydro-3-deoxyphosphooctonate
Aldolase From Vibrio Cholerae O1 Biovar Eltor Str.
N16961
Length = 286
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 75 KIAARVVEEAKEICSSKSVHDFVVEVVE-GDARNILCEAVEKHHASILVVGSHGYGAIKR 133
K A + + + S V + V + E G+ + ILCE H LVV G+G +K+
Sbjct: 133 KTGAVINVKKPQFMSPGQVGNIVEKFAECGNDKVILCERGSCHGYDNLVVDMLGFGVMKQ 192
Query: 134 AVLGS 138
A GS
Sbjct: 193 ASNGS 197
>pdb|3FH0|A Chain A, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
pdb|3FH0|B Chain B, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
Length = 144
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 100 VVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155
V EG ++ + + A ++++ SH I +LGS + HA C+V++V+
Sbjct: 90 VAEGSPKDKILALAKSLPADLVIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
>pdb|3FDX|A Chain A, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae.
pdb|3FDX|B Chain B, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae
Length = 143
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 100 VVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155
V EG ++ + + A ++++ SH I +LGS + HA C+V++V+
Sbjct: 89 VAEGSPKDKILALAKSLPADLVIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 143
>pdb|2Y0S|C Chain C, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|Y Chain Y, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|C Chain C, Rnap At 3.2ang
pdb|4B1O|C Chain C, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|Y Chain Y, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 395
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 62 AVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVE------K 115
++ ++ +D++ K V++ K+ + + +FV++ EG+ NI ++ K
Sbjct: 162 SMSIILQLDNEMLKDKGVTVDDVKKAINRLKLGEFVIDESEGNTLNISFANIDSIAALFK 221
Query: 116 HHASILVVGSHGYGAIKRAVLGSVSD 141
IL G IKRA++ D
Sbjct: 222 LRDKILNTKIKGIKGIKRAIVQKKGD 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,857,286
Number of Sequences: 62578
Number of extensions: 173604
Number of successful extensions: 499
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 27
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)