Query 031355
Match_columns 161
No_of_seqs 149 out of 1811
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 20:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 100.0 1.4E-30 4.7E-35 169.7 12.9 145 2-155 1-146 (146)
2 3tnj_A Universal stress protei 100.0 1.2E-29 4E-34 166.1 15.3 146 3-158 3-149 (150)
3 3hgm_A Universal stress protei 100.0 6.7E-30 2.3E-34 166.6 13.6 145 5-154 1-147 (147)
4 2dum_A Hypothetical protein PH 100.0 3.1E-29 1.1E-33 167.4 15.8 152 3-160 2-160 (170)
5 1mjh_A Protein (ATP-binding do 100.0 2.9E-29 1E-33 166.2 14.6 151 1-158 1-161 (162)
6 3fg9_A Protein of universal st 100.0 4.3E-29 1.5E-33 164.5 14.7 142 2-155 11-156 (156)
7 3dlo_A Universal stress protei 100.0 4.7E-28 1.6E-32 159.6 15.1 132 3-155 21-155 (155)
8 1tq8_A Hypothetical protein RV 100.0 3E-28 1E-32 161.7 13.0 146 3-159 14-161 (163)
9 2z08_A Universal stress protei 100.0 9.4E-28 3.2E-32 154.9 13.7 137 5-155 1-137 (137)
10 3idf_A USP-like protein; unive 100.0 7.5E-28 2.6E-32 155.4 13.0 136 6-155 1-138 (138)
11 2gm3_A Unknown protein; AT3G01 100.0 1E-27 3.6E-32 160.7 14.2 151 3-158 2-165 (175)
12 3fdx_A Putative filament prote 100.0 2.2E-27 7.4E-32 154.0 13.2 139 6-155 1-143 (143)
13 3olq_A Universal stress protei 99.9 9.7E-26 3.3E-30 163.9 13.8 148 3-158 4-152 (319)
14 1jmv_A USPA, universal stress 99.9 4.9E-26 1.7E-30 147.3 9.6 140 5-158 1-140 (141)
15 3loq_A Universal stress protei 99.9 1.1E-25 3.9E-30 162.0 10.0 144 3-158 19-164 (294)
16 3mt0_A Uncharacterized protein 99.9 4.6E-24 1.6E-28 153.4 14.0 138 5-157 133-277 (290)
17 3cis_A Uncharacterized protein 99.9 1.1E-23 3.8E-28 152.7 15.0 144 3-158 16-163 (309)
18 3ab8_A Putative uncharacterize 99.9 2.5E-24 8.5E-29 153.0 11.0 143 7-158 1-151 (268)
19 3mt0_A Uncharacterized protein 99.9 3.3E-24 1.1E-28 154.1 11.8 125 3-157 4-129 (290)
20 1q77_A Hypothetical protein AQ 99.9 1.8E-24 6.2E-29 139.5 9.2 132 4-155 2-138 (138)
21 3loq_A Universal stress protei 99.9 2.4E-23 8.1E-28 149.9 14.0 126 4-159 168-293 (294)
22 3olq_A Universal stress protei 99.9 2.6E-23 8.7E-28 151.1 13.0 145 5-158 155-307 (319)
23 3cis_A Uncharacterized protein 99.9 1.3E-22 4.4E-27 147.0 15.4 139 4-158 169-308 (309)
24 3ab8_A Putative uncharacterize 99.8 1.8E-20 6.2E-25 133.1 12.7 116 5-155 153-268 (268)
25 2iel_A Hypothetical protein TT 96.7 0.047 1.6E-06 34.2 10.5 129 7-154 2-133 (138)
26 3g40_A Na-K-CL cotransporter; 95.6 0.054 1.8E-06 38.4 7.3 87 40-159 194-280 (294)
27 3a2k_A TRNA(Ile)-lysidine synt 95.6 0.15 5E-06 38.8 10.1 96 5-127 17-129 (464)
28 1wy5_A TILS, hypothetical UPF0 95.0 0.21 7.3E-06 35.9 9.0 95 5-127 23-135 (317)
29 4b4k_A N5-carboxyaminoimidazol 94.2 0.27 9.1E-06 32.3 7.1 68 82-158 39-110 (181)
30 3umv_A Deoxyribodipyrimidine p 93.9 0.51 1.7E-05 36.3 9.3 86 17-123 50-135 (506)
31 2xry_A Deoxyribodipyrimidine p 93.5 0.59 2E-05 35.6 9.1 112 18-156 50-161 (482)
32 3oow_A Phosphoribosylaminoimid 93.4 0.59 2E-05 30.3 7.5 69 81-158 21-93 (166)
33 4grd_A N5-CAIR mutase, phospho 93.3 0.52 1.8E-05 30.7 7.1 67 82-157 29-99 (173)
34 2ywx_A Phosphoribosylaminoimid 93.2 0.57 2E-05 30.1 7.2 67 81-156 15-82 (157)
35 3trh_A Phosphoribosylaminoimid 93.1 0.59 2E-05 30.4 7.2 68 81-157 22-93 (169)
36 2wq7_A RE11660P; lyase-DNA com 92.6 1.3 4.3E-05 34.5 9.9 129 7-156 29-161 (543)
37 3lp6_A Phosphoribosylaminoimid 92.6 0.5 1.7E-05 30.9 6.4 67 82-157 24-94 (174)
38 3kuu_A Phosphoribosylaminoimid 92.5 0.78 2.7E-05 29.9 7.2 67 82-157 29-99 (174)
39 3g40_A Na-K-CL cotransporter; 92.5 2 7E-05 30.5 12.3 121 8-157 22-147 (294)
40 1xmp_A PURE, phosphoribosylami 92.5 0.82 2.8E-05 29.7 7.2 68 82-158 28-99 (170)
41 3ors_A N5-carboxyaminoimidazol 92.1 0.52 1.8E-05 30.5 6.0 68 81-157 19-90 (163)
42 1o4v_A Phosphoribosylaminoimid 92.0 0.51 1.7E-05 31.1 5.9 69 81-158 29-101 (183)
43 3rg8_A Phosphoribosylaminoimid 91.4 1.2 4.1E-05 28.7 7.1 68 81-157 18-90 (159)
44 1u11_A PURE (N5-carboxyaminoim 91.3 1.2 4E-05 29.3 7.0 68 82-158 38-109 (182)
45 1iv0_A Hypothetical protein; r 91.1 0.67 2.3E-05 27.3 5.4 55 104-159 38-96 (98)
46 1o97_C Electron transferring f 90.7 3.1 0.00011 29.1 11.4 84 11-129 31-124 (264)
47 1zun_A Sulfate adenylyltransfe 90.3 2.1 7.2E-05 30.9 8.4 39 6-49 46-84 (325)
48 3tvs_A Cryptochrome-1; circadi 88.2 0.88 3E-05 35.3 5.4 89 17-125 16-107 (538)
49 3ih5_A Electron transfer flavo 87.2 5.2 0.00018 27.0 8.9 85 6-126 3-100 (217)
50 2hma_A Probable tRNA (5-methyl 86.8 7.6 0.00026 28.6 9.9 40 2-50 5-44 (376)
51 3kcq_A Phosphoribosylglycinami 85.5 6.5 0.00022 26.6 8.9 89 2-127 4-92 (215)
52 1ni5_A Putative cell cycle pro 82.8 4.5 0.00015 30.4 6.9 41 5-50 12-53 (433)
53 4f2d_A L-arabinose isomerase; 82.4 7.2 0.00025 30.0 7.9 47 105-157 59-106 (500)
54 1nu0_A Hypothetical protein YQ 82.3 0.97 3.3E-05 28.4 2.6 55 104-158 40-98 (138)
55 1qv9_A F420-dependent methylen 82.2 3.1 0.00011 28.7 5.2 44 109-156 56-99 (283)
56 1np7_A DNA photolyase; protein 82.0 12 0.0004 28.6 9.0 102 7-126 6-109 (489)
57 2h31_A Multifunctional protein 81.9 4.2 0.00014 30.5 6.3 68 81-157 281-353 (425)
58 1vhx_A Putative holliday junct 81.6 0.65 2.2E-05 29.6 1.6 55 104-158 42-100 (150)
59 1efv_B Electron transfer flavo 81.5 11 0.00038 26.2 10.4 78 16-129 39-128 (255)
60 3fy4_A 6-4 photolyase; DNA rep 81.5 4.4 0.00015 31.4 6.5 103 7-125 5-111 (537)
61 1efp_B ETF, protein (electron 80.7 12 0.0004 25.9 10.4 80 14-129 34-125 (252)
62 2j4d_A Cryptochrome 3, cryptoc 79.9 15 0.00051 28.4 9.0 102 8-126 41-144 (525)
63 1owl_A Photolyase, deoxyribodi 79.3 7.7 0.00026 29.6 7.2 115 17-156 15-129 (484)
64 2j07_A Deoxyribodipyrimidine p 79.1 13 0.00045 27.7 8.3 107 18-156 15-121 (420)
65 1dnp_A DNA photolyase; DNA rep 78.3 6.1 0.00021 30.0 6.3 87 18-126 14-104 (471)
66 3zqu_A Probable aromatic acid 77.2 5.4 0.00018 26.9 5.1 37 5-47 3-39 (209)
67 1sur_A PAPS reductase; assimil 77.0 14 0.00046 24.6 9.5 34 7-49 45-78 (215)
68 2e0i_A 432AA long hypothetical 75.9 13 0.00044 28.0 7.4 114 17-156 13-126 (440)
69 3k32_A Uncharacterized protein 75.0 7 0.00024 25.9 5.3 40 2-50 2-41 (203)
70 3qjg_A Epidermin biosynthesis 74.1 5.3 0.00018 26.1 4.4 112 4-155 3-117 (175)
71 1k92_A Argininosuccinate synth 72.9 29 0.00098 26.4 9.9 38 4-50 8-45 (455)
72 3bl5_A Queuosine biosynthesis 72.8 18 0.0006 23.9 11.2 37 5-50 2-38 (219)
73 3f6p_A Transcriptional regulat 72.4 12 0.0004 21.7 7.6 47 106-156 35-81 (120)
74 2yxb_A Coenzyme B12-dependent 71.4 13 0.00044 23.7 5.7 41 85-128 39-80 (161)
75 2nz2_A Argininosuccinate synth 70.8 30 0.001 25.8 9.6 37 5-50 4-40 (413)
76 1vp8_A Hypothetical protein AF 70.6 12 0.0004 25.0 5.3 78 75-154 26-104 (201)
77 1u3d_A Cryptochrome 1 apoprote 70.2 31 0.0011 26.4 8.5 123 8-156 13-138 (509)
78 1ccw_A Protein (glutamate muta 69.0 17 0.0006 22.3 6.1 65 85-154 24-91 (137)
79 3da8_A Probable 5'-phosphoribo 68.0 25 0.00085 23.7 8.2 85 4-127 10-99 (215)
80 3o1l_A Formyltetrahydrofolate 67.8 30 0.001 24.6 9.0 84 5-127 104-191 (302)
81 2nwr_A 2-dehydro-3-deoxyphosph 67.2 29 0.001 24.2 8.3 63 81-156 64-126 (267)
82 2gkg_A Response regulator homo 66.4 16 0.00055 21.0 5.3 46 106-154 38-86 (127)
83 2dfa_A Hypothetical UPF0271 pr 66.3 30 0.001 24.0 8.8 119 11-152 33-161 (250)
84 1jq5_A Glycerol dehydrogenase; 66.2 19 0.00064 26.3 6.3 69 80-157 46-119 (370)
85 4ds3_A Phosphoribosylglycinami 66.2 27 0.00092 23.4 10.4 87 4-127 5-96 (209)
86 3n0v_A Formyltetrahydrofolate 66.2 32 0.0011 24.3 8.9 84 5-127 89-176 (286)
87 1v6t_A Hypothetical UPF0271 pr 65.8 31 0.0011 24.0 10.8 119 11-152 33-161 (255)
88 3kht_A Response regulator; PSI 65.7 19 0.00064 21.5 7.1 68 83-157 20-90 (144)
89 1g63_A Epidermin modifying enz 65.2 8 0.00027 25.3 3.8 37 5-47 1-37 (181)
90 3p9x_A Phosphoribosylglycinami 63.5 31 0.0011 23.2 9.1 85 6-127 2-91 (211)
91 2qv7_A Diacylglycerol kinase D 63.5 19 0.00065 25.8 5.9 70 81-157 44-115 (337)
92 1xw8_A UPF0271 protein YBGL; N 63.0 35 0.0012 23.7 10.3 115 15-152 32-156 (252)
93 1y80_A Predicted cobalamin bin 62.8 23 0.00078 23.4 5.8 24 104-127 126-149 (210)
94 3i42_A Response regulator rece 62.5 20 0.00069 20.7 8.4 49 105-157 35-86 (127)
95 3obi_A Formyltetrahydrofolate 61.2 40 0.0014 23.8 7.1 21 107-127 156-176 (288)
96 3t8y_A CHEB, chemotaxis respon 61.1 26 0.0009 21.6 8.2 47 106-156 60-106 (164)
97 3s40_A Diacylglycerol kinase; 60.8 24 0.00083 24.9 6.0 68 82-157 29-98 (304)
98 3cg4_A Response regulator rece 60.7 23 0.0008 20.9 7.8 50 104-157 38-90 (142)
99 4hs4_A Chromate reductase; tri 60.5 33 0.0011 22.5 8.0 43 1-49 1-47 (199)
100 3lou_A Formyltetrahydrofolate 60.3 42 0.0015 23.7 9.2 84 5-127 94-181 (292)
101 2j48_A Two-component sensor ki 60.1 21 0.00071 20.1 7.8 48 106-157 34-84 (119)
102 2ppv_A Uncharacterized protein 60.0 8.7 0.0003 27.9 3.5 51 104-157 166-218 (332)
103 2p0y_A Hypothetical protein LP 59.9 8.1 0.00028 28.1 3.3 50 104-156 177-228 (341)
104 2oq2_A Phosphoadenosine phosph 59.5 40 0.0014 23.2 8.5 38 6-49 41-78 (261)
105 2ejb_A Probable aromatic acid 59.1 22 0.00075 23.4 5.1 34 7-46 2-35 (189)
106 2zay_A Response regulator rece 58.9 26 0.0009 20.9 6.0 48 106-157 41-91 (147)
107 2q5c_A NTRC family transcripti 58.8 36 0.0012 22.4 8.5 49 97-157 30-79 (196)
108 1p3y_1 MRSD protein; flavoprot 57.6 14 0.00049 24.5 4.0 37 4-46 6-42 (194)
109 2o2z_A Hypothetical protein; s 57.2 9.8 0.00034 27.5 3.3 51 104-157 167-219 (323)
110 3gxq_A Putative regulator of t 57.1 14 0.00047 18.0 2.8 25 96-120 12-37 (54)
111 3d0c_A Dihydrodipicolinate syn 56.9 50 0.0017 23.5 8.1 61 94-155 82-144 (314)
112 3nrb_A Formyltetrahydrofolate 56.5 49 0.0017 23.3 6.8 21 107-127 155-175 (287)
113 2q7x_A UPF0052 protein SP_1565 56.2 9.3 0.00032 27.6 3.1 50 104-156 173-224 (326)
114 1xrs_A D-lysine 5,6-aminomutas 56.0 48 0.0016 25.2 6.8 48 92-139 149-199 (516)
115 1k68_A Phytochrome response re 55.4 29 0.00098 20.3 6.2 69 82-157 16-94 (140)
116 3tqi_A GMP synthase [glutamine 55.3 45 0.0015 25.7 7.0 35 7-49 231-265 (527)
117 3hv2_A Response regulator/HD d 55.0 32 0.0011 20.7 6.6 67 82-157 28-95 (153)
118 2bon_A Lipid kinase; DAG kinas 54.4 44 0.0015 23.9 6.5 68 83-157 48-119 (332)
119 3klo_A Transcriptional regulat 54.3 30 0.001 22.7 5.3 58 96-157 33-92 (225)
120 1zco_A 2-dehydro-3-deoxyphosph 54.3 52 0.0018 22.8 11.0 104 18-156 35-138 (262)
121 3h5i_A Response regulator/sens 54.2 32 0.0011 20.4 8.5 53 102-157 35-87 (140)
122 3dm5_A SRP54, signal recogniti 53.9 69 0.0024 24.2 9.6 84 14-130 109-195 (443)
123 3rjz_A N-type ATP pyrophosphat 53.7 46 0.0016 22.8 6.1 91 7-126 5-99 (237)
124 1qzu_A Hypothetical protein MD 53.4 23 0.00077 23.7 4.5 39 4-47 17-55 (206)
125 1zgz_A Torcad operon transcrip 53.3 29 0.001 19.8 7.7 47 106-156 35-81 (122)
126 2wsi_A FAD synthetase; transfe 53.1 58 0.002 23.1 9.8 24 7-30 54-77 (306)
127 2vc6_A MOSA, dihydrodipicolina 53.0 56 0.0019 22.9 7.4 60 96-155 72-133 (292)
128 3n53_A Response regulator rece 52.9 33 0.0011 20.2 7.7 48 106-157 35-85 (140)
129 2ojp_A DHDPS, dihydrodipicolin 52.7 57 0.0019 22.9 7.1 60 96-155 73-134 (292)
130 1o5k_A DHDPS, dihydrodipicolin 52.3 60 0.002 23.0 7.6 60 96-155 84-145 (306)
131 2v9d_A YAGE; dihydrodipicolini 52.2 64 0.0022 23.3 7.6 60 96-155 103-164 (343)
132 3eul_A Possible nitrate/nitrit 52.0 36 0.0012 20.4 6.1 49 105-157 49-98 (152)
133 3vmk_A 3-isopropylmalate dehyd 51.9 69 0.0024 23.6 7.5 77 17-124 179-255 (375)
134 1f6k_A N-acetylneuraminate lya 51.9 59 0.002 22.8 6.9 52 104-155 84-137 (293)
135 3eod_A Protein HNR; response r 51.5 33 0.0011 19.8 6.1 48 106-157 40-88 (130)
136 1vr6_A Phospho-2-dehydro-3-deo 51.3 69 0.0023 23.4 10.6 104 18-156 118-221 (350)
137 2qzj_A Two-component response 51.2 36 0.0012 20.1 6.9 47 107-157 38-84 (136)
138 2r8w_A AGR_C_1641P; APC7498, d 51.2 65 0.0022 23.1 7.9 60 96-155 106-167 (332)
139 1w0d_A 3-isopropylmalate dehyd 51.2 68 0.0023 23.3 8.2 78 17-124 154-231 (337)
140 1xky_A Dihydrodipicolinate syn 50.9 63 0.0021 22.8 7.8 60 96-155 84-145 (301)
141 3hly_A Flavodoxin-like domain; 50.6 44 0.0015 20.9 5.7 40 87-129 24-63 (161)
142 3m5v_A DHDPS, dihydrodipicolin 50.5 63 0.0022 22.8 10.4 49 107-155 93-141 (301)
143 3q9s_A DNA-binding response re 50.5 54 0.0019 22.0 7.1 48 106-157 70-117 (249)
144 2ehh_A DHDPS, dihydrodipicolin 50.4 63 0.0021 22.7 7.7 52 104-155 80-133 (294)
145 2rfg_A Dihydrodipicolinate syn 50.3 64 0.0022 22.7 7.0 60 96-155 72-133 (297)
146 2pg3_A Queuosine biosynthesis 50.3 54 0.0018 21.9 11.2 35 6-49 2-36 (232)
147 2yxg_A DHDPS, dihydrodipicolin 50.3 62 0.0021 22.6 7.5 52 104-155 80-133 (289)
148 3a5f_A Dihydrodipicolinate syn 50.0 63 0.0022 22.6 6.7 60 96-155 73-134 (291)
149 1qkk_A DCTD, C4-dicarboxylate 49.4 35 0.0012 20.6 4.8 47 106-156 36-83 (155)
150 1o2d_A Alcohol dehydrogenase, 49.1 56 0.0019 23.8 6.4 21 105-125 86-107 (371)
151 3gt7_A Sensor protein; structu 48.6 43 0.0015 20.3 8.2 48 106-157 40-90 (154)
152 2i2x_B MTAC, methyltransferase 48.5 63 0.0022 22.2 6.9 65 85-154 144-210 (258)
153 3lqk_A Dipicolinate synthase s 48.4 25 0.00086 23.4 4.1 37 4-46 5-42 (201)
154 3nbm_A PTS system, lactose-spe 48.0 31 0.0011 20.4 4.1 34 117-156 53-86 (108)
155 2wkj_A N-acetylneuraminate lya 48.0 71 0.0024 22.6 6.9 52 104-155 91-145 (303)
156 3cpr_A Dihydrodipicolinate syn 47.7 71 0.0024 22.6 7.7 52 104-155 96-149 (304)
157 2l69_A Rossmann 2X3 fold prote 47.6 25 0.00087 20.3 3.4 47 78-125 36-83 (134)
158 2qr3_A Two-component system re 47.6 40 0.0014 19.7 5.5 47 106-155 36-87 (140)
159 1sbz_A Probable aromatic acid 47.5 39 0.0013 22.4 4.9 35 7-46 1-35 (197)
160 1rtt_A Conserved hypothetical 47.5 21 0.00073 23.0 3.6 43 1-49 1-46 (193)
161 3kyj_B CHEY6 protein, putative 47.1 43 0.0015 19.9 7.8 68 82-156 27-95 (145)
162 2x5e_A UPF0271 protein PA4511; 46.9 69 0.0024 22.2 9.1 121 12-152 40-170 (252)
163 1uf3_A Hypothetical protein TT 46.9 31 0.0011 22.4 4.5 9 42-50 6-14 (228)
164 2dpl_A GMP synthetase, GMP syn 46.9 74 0.0025 22.5 8.3 35 7-49 21-55 (308)
165 3vzx_A Heptaprenylglyceryl pho 46.8 30 0.001 23.6 4.3 47 108-157 22-68 (228)
166 1s8n_A Putative antiterminator 46.4 55 0.0019 20.9 7.7 45 107-155 48-92 (205)
167 3fni_A Putative diflavin flavo 46.4 52 0.0018 20.6 6.1 23 105-129 46-68 (159)
168 3kl4_A SRP54, signal recogniti 46.3 91 0.0031 23.4 8.0 83 15-130 107-192 (433)
169 2pju_A Propionate catabolism o 46.2 66 0.0023 21.7 8.8 60 85-157 29-91 (225)
170 3ce9_A Glycerol dehydrogenase; 45.9 26 0.00089 25.3 4.2 66 82-157 51-121 (354)
171 3w01_A Heptaprenylglyceryl pho 45.8 31 0.0011 23.7 4.2 47 108-157 27-73 (235)
172 1t57_A Conserved protein MTH16 45.8 23 0.0008 23.6 3.5 76 75-153 34-110 (206)
173 1meo_A Phosophoribosylglycinam 45.5 65 0.0022 21.5 10.0 105 7-157 1-110 (209)
174 1rrm_A Lactaldehyde reductase; 44.9 32 0.0011 25.2 4.5 21 105-125 76-97 (386)
175 2a9o_A Response regulator; ess 44.2 42 0.0014 18.9 8.0 47 107-157 35-81 (120)
176 3na8_A Putative dihydrodipicol 44.2 84 0.0029 22.4 7.3 60 96-155 96-157 (315)
177 1w2w_B 5-methylthioribose-1-ph 44.1 25 0.00087 23.2 3.5 44 112-156 44-93 (191)
178 1vlc_A 3-isopropylmalate dehyd 43.9 94 0.0032 22.9 8.1 77 17-124 174-250 (366)
179 2y3z_A 3-isopropylmalate dehyd 43.8 94 0.0032 22.8 8.1 77 17-124 163-239 (359)
180 3lua_A Response regulator rece 43.7 37 0.0013 20.0 4.1 49 106-157 38-90 (140)
181 3to5_A CHEY homolog; alpha(5)b 43.6 53 0.0018 20.0 6.2 47 107-157 47-96 (134)
182 3tdn_A FLR symmetric alpha-bet 43.4 52 0.0018 22.2 5.2 48 107-154 38-85 (247)
183 3l21_A DHDPS, dihydrodipicolin 43.4 85 0.0029 22.2 7.5 60 96-155 87-148 (304)
184 3nhm_A Response regulator; pro 43.3 47 0.0016 19.2 6.3 49 105-157 35-86 (133)
185 3cnb_A DNA-binding response re 43.2 49 0.0017 19.4 6.2 48 106-157 43-93 (143)
186 2ywr_A Phosphoribosylglycinami 43.2 72 0.0025 21.3 10.3 42 107-157 70-111 (216)
187 1xhf_A DYE resistance, aerobic 43.1 45 0.0015 18.9 8.1 48 106-157 36-83 (123)
188 3ezx_A MMCP 1, monomethylamine 43.0 40 0.0014 22.5 4.5 36 85-123 113-149 (215)
189 2b4a_A BH3024; flavodoxin-like 43.0 49 0.0017 19.3 5.6 46 106-155 48-95 (138)
190 2jba_A Phosphate regulon trans 42.8 46 0.0016 19.0 4.7 47 106-156 35-84 (127)
191 1cnz_A IPMDH, IMDH, protein (3 42.8 98 0.0033 22.7 8.1 77 17-124 170-246 (363)
192 2gwr_A DNA-binding response re 42.7 70 0.0024 21.0 7.6 45 109-157 41-85 (238)
193 3tqr_A Phosphoribosylglycinami 42.4 75 0.0026 21.3 8.9 84 6-127 5-93 (215)
194 3qxc_A Dethiobiotin synthetase 42.2 47 0.0016 22.7 4.8 49 107-156 119-169 (242)
195 1a05_A IPMDH, IMDH, 3-isopropy 41.8 1E+02 0.0034 22.6 8.4 77 17-124 165-241 (358)
196 3bfj_A 1,3-propanediol oxidore 41.6 47 0.0016 24.3 5.0 21 105-125 80-101 (387)
197 1ta9_A Glycerol dehydrogenase; 41.5 51 0.0018 24.9 5.3 68 80-157 106-178 (450)
198 3grc_A Sensor protein, kinase; 41.4 53 0.0018 19.2 7.8 47 106-156 39-88 (140)
199 1kor_A Argininosuccinate synth 41.4 1.1E+02 0.0036 22.7 9.3 36 7-50 1-36 (400)
200 2c5s_A THII, probable thiamine 41.3 1.1E+02 0.0036 22.8 12.1 35 6-49 187-221 (413)
201 4e0q_A COP9 signalosome comple 41.3 41 0.0014 20.9 4.0 47 108-154 74-120 (141)
202 2ywb_A GMP synthase [glutamine 41.2 1.2E+02 0.004 23.2 10.3 34 7-49 210-243 (503)
203 1h5y_A HISF; histidine biosynt 41.0 48 0.0017 22.1 4.8 48 107-154 157-204 (253)
204 3mcu_A Dipicolinate synthase, 40.8 36 0.0012 22.8 3.9 38 4-47 3-41 (207)
205 3u1h_A 3-isopropylmalate dehyd 40.8 1.1E+02 0.0038 22.7 8.1 77 17-124 186-262 (390)
206 3inp_A D-ribulose-phosphate 3- 40.6 58 0.002 22.4 5.0 44 81-126 182-225 (246)
207 1vlj_A NADH-dependent butanol 40.6 67 0.0023 23.7 5.7 21 105-125 89-110 (407)
208 2oqr_A Sensory transduction pr 40.3 74 0.0025 20.6 7.5 46 107-156 38-83 (230)
209 4e7p_A Response regulator; DNA 40.0 59 0.002 19.4 7.8 50 104-157 53-103 (150)
210 1k66_A Phytochrome response re 39.8 57 0.0019 19.2 6.1 38 116-157 61-101 (149)
211 2o8v_A Phosphoadenosine phosph 39.8 87 0.003 21.3 9.2 34 7-49 46-79 (252)
212 1x0l_A Homoisocitrate dehydrog 39.6 1.1E+02 0.0036 22.2 7.5 79 17-124 144-222 (333)
213 3qze_A DHDPS, dihydrodipicolin 39.5 1E+02 0.0034 21.9 7.8 60 96-155 95-156 (314)
214 3h1g_A Chemotaxis protein CHEY 39.3 56 0.0019 18.9 7.6 52 102-157 36-90 (129)
215 3n0r_A Response regulator; sig 39.1 95 0.0032 21.5 7.4 51 103-157 192-242 (286)
216 3pm6_A Putative fructose-bisph 39.1 17 0.00059 26.0 2.2 52 102-153 36-87 (306)
217 3lte_A Response regulator; str 38.9 56 0.0019 18.8 7.6 22 106-127 39-60 (132)
218 3udu_A 3-isopropylmalate dehyd 38.7 1.1E+02 0.0039 22.4 8.2 77 17-124 167-243 (361)
219 2der_A TRNA-specific 2-thiouri 38.7 1.2E+02 0.0039 22.4 10.5 36 5-49 16-51 (380)
220 3b2n_A Uncharacterized protein 38.6 58 0.002 18.9 7.7 48 106-157 38-86 (133)
221 3daq_A DHDPS, dihydrodipicolin 38.6 1E+02 0.0034 21.6 6.9 60 96-155 74-135 (292)
222 3en0_A Cyanophycinase; serine 38.5 56 0.0019 23.1 4.8 105 9-145 28-138 (291)
223 2f6u_A GGGPS, (S)-3-O-geranylg 38.4 36 0.0012 23.3 3.6 48 107-157 23-70 (234)
224 2pjk_A 178AA long hypothetical 38.2 79 0.0027 20.4 5.3 43 82-124 43-88 (178)
225 3flu_A DHDPS, dihydrodipicolin 38.1 1E+02 0.0035 21.6 7.7 60 96-155 79-140 (297)
226 3snk_A Response regulator CHEY 38.1 60 0.002 18.9 5.8 44 110-157 52-96 (135)
227 3e96_A Dihydrodipicolinate syn 38.0 1.1E+02 0.0036 21.8 6.8 59 96-155 84-144 (316)
228 3uhj_A Probable glycerol dehyd 37.6 52 0.0018 24.2 4.7 69 80-157 67-139 (387)
229 2q8u_A Exonuclease, putative; 37.4 23 0.00079 25.2 2.8 11 41-51 18-28 (336)
230 1gvf_A Tagatose-bisphosphate a 37.4 17 0.00057 25.8 1.9 53 101-153 26-79 (286)
231 3vk5_A MOEO5; TIM barrel, tran 37.3 30 0.001 24.5 3.1 46 109-155 58-104 (286)
232 3tak_A DHDPS, dihydrodipicolin 37.3 1E+02 0.0036 21.5 7.5 60 96-155 73-134 (291)
233 4dad_A Putative pilus assembly 37.2 64 0.0022 19.0 5.6 52 102-157 51-104 (146)
234 1ydg_A Trp repressor binding p 37.1 85 0.0029 20.4 5.4 45 1-50 1-46 (211)
235 2hy5_B Intracellular sulfur ox 36.7 73 0.0025 19.5 5.3 39 5-49 4-46 (136)
236 2lpm_A Two-component response 35.8 68 0.0023 19.2 4.3 46 106-156 42-87 (123)
237 3ox4_A Alcohol dehydrogenase 2 35.7 1E+02 0.0034 22.6 6.0 43 81-123 48-94 (383)
238 2w6r_A Imidazole glycerol phos 35.7 74 0.0025 21.6 5.1 46 108-153 34-79 (266)
239 3r8w_A 3-isopropylmalate dehyd 35.7 1.4E+02 0.0047 22.4 8.4 77 17-124 207-283 (405)
240 3elf_A Fructose-bisphosphate a 35.7 27 0.00092 25.5 2.8 52 102-153 30-92 (349)
241 3si9_A DHDPS, dihydrodipicolin 35.3 1.2E+02 0.0041 21.6 7.4 60 96-155 94-155 (315)
242 2amj_A Modulator of drug activ 34.9 73 0.0025 20.9 4.7 47 79-128 34-81 (204)
243 3ilh_A Two component response 34.8 69 0.0024 18.7 8.2 47 107-157 45-101 (146)
244 1t9k_A Probable methylthioribo 34.5 68 0.0023 23.3 4.8 44 112-156 222-269 (347)
245 3gl9_A Response regulator; bet 34.5 66 0.0023 18.4 8.0 47 107-157 36-85 (122)
246 1mb3_A Cell division response 34.3 65 0.0022 18.2 7.8 47 107-157 35-84 (124)
247 3inp_A D-ribulose-phosphate 3- 34.3 58 0.002 22.4 4.2 58 83-143 125-182 (246)
248 2yvk_A Methylthioribose-1-phos 34.1 70 0.0024 23.6 4.8 44 112-156 247-294 (374)
249 3fgn_A Dethiobiotin synthetase 34.1 97 0.0033 21.2 5.4 49 107-156 114-165 (251)
250 2qxy_A Response regulator; reg 34.1 72 0.0025 18.6 7.3 47 106-157 37-84 (142)
251 3b4u_A Dihydrodipicolinate syn 34.0 1.2E+02 0.0041 21.2 7.1 62 94-155 73-140 (294)
252 1of8_A Phospho-2-dehydro-3-deo 34.0 1.4E+02 0.0048 22.0 10.3 126 7-156 67-203 (370)
253 3cu5_A Two component transcrip 33.9 64 0.0022 19.1 4.1 20 107-126 39-58 (141)
254 2a0u_A Initiation factor 2B; S 33.7 72 0.0025 23.6 4.9 44 112-156 251-298 (383)
255 3blx_A Isocitrate dehydrogenas 33.6 1.4E+02 0.0047 21.8 7.5 79 17-124 157-236 (349)
256 2qvg_A Two component response 33.6 73 0.0025 18.6 7.2 38 116-157 58-98 (143)
257 1vbk_A Hypothetical protein PH 33.5 1.3E+02 0.0044 21.3 9.4 86 6-126 179-264 (307)
258 2rjn_A Response regulator rece 33.0 80 0.0027 18.8 7.3 47 106-156 40-87 (154)
259 1vs1_A 3-deoxy-7-phosphoheptul 32.9 1.3E+02 0.0043 21.1 9.6 104 18-156 50-153 (276)
260 3nkl_A UDP-D-quinovosamine 4-d 32.7 62 0.0021 19.4 3.9 17 107-123 82-98 (141)
261 2rdm_A Response regulator rece 32.5 73 0.0025 18.2 6.9 49 106-157 38-88 (132)
262 3flk_A Tartrate dehydrogenase/ 32.5 1.5E+02 0.0051 21.8 8.1 79 17-124 166-244 (364)
263 3ctl_A D-allulose-6-phosphate 32.4 73 0.0025 21.6 4.5 57 82-141 96-152 (231)
264 2nuw_A 2-keto-3-deoxygluconate 32.3 1.3E+02 0.0044 21.0 6.8 52 104-155 76-130 (288)
265 3pzy_A MOG; ssgcid, seattle st 32.3 66 0.0023 20.4 4.0 41 82-124 30-73 (164)
266 2zki_A 199AA long hypothetical 32.2 99 0.0034 19.7 5.1 39 7-50 5-43 (199)
267 2qsj_A DNA-binding response re 32.0 54 0.0018 19.6 3.6 48 106-157 38-87 (154)
268 1srr_A SPO0F, sporulation resp 31.8 73 0.0025 18.0 7.6 46 107-156 37-83 (124)
269 1y5e_A Molybdenum cofactor bio 31.5 1E+02 0.0034 19.6 5.1 41 84-124 36-79 (169)
270 3bul_A Methionine synthase; tr 31.1 1E+02 0.0035 24.2 5.5 65 85-154 119-185 (579)
271 3q94_A Fructose-bisphosphate a 30.9 29 0.00098 24.6 2.2 52 102-153 30-85 (288)
272 3t1i_A Double-strand break rep 30.7 70 0.0024 24.0 4.5 13 146-158 137-149 (431)
273 3f6c_A Positive transcription 30.6 80 0.0027 18.1 6.9 44 110-157 39-83 (134)
274 3c3d_A 2-phospho-L-lactate tra 30.5 44 0.0015 24.0 3.2 48 104-156 172-221 (311)
275 3iwt_A 178AA long hypothetical 30.4 1.1E+02 0.0036 19.5 5.4 42 83-125 44-89 (178)
276 1a2o_A CHEB methylesterase; ba 30.3 1.5E+02 0.0052 21.3 9.0 50 102-156 35-84 (349)
277 1w3i_A EDA, 2-keto-3-deoxy glu 30.2 1.4E+02 0.0048 20.9 6.8 52 104-155 76-130 (293)
278 3cz5_A Two-component response 30.2 90 0.0031 18.6 4.9 48 106-157 40-88 (153)
279 3cg0_A Response regulator rece 30.2 83 0.0028 18.2 7.8 48 107-157 44-91 (140)
280 2y88_A Phosphoribosyl isomeras 30.1 77 0.0026 21.2 4.3 48 107-154 152-199 (244)
281 1vl2_A Argininosuccinate synth 30.0 1.8E+02 0.006 21.9 8.5 37 4-49 12-48 (421)
282 1vzw_A Phosphoribosyl isomeras 29.6 72 0.0025 21.4 4.1 48 107-154 149-196 (244)
283 3av0_A DNA double-strand break 29.5 40 0.0014 24.6 3.0 11 41-51 20-30 (386)
284 3dff_A Teicoplanin pseudoaglyc 29.3 1.4E+02 0.0049 20.6 9.4 50 105-154 136-185 (273)
285 1mvo_A PHOP response regulator 29.0 87 0.003 18.0 8.5 47 107-157 37-84 (136)
286 1thf_D HISF protein; thermophI 29.0 1.2E+02 0.0043 20.2 5.3 49 106-154 153-201 (253)
287 1viz_A PCRB protein homolog; s 28.9 61 0.0021 22.2 3.6 47 107-156 23-69 (240)
288 2r91_A 2-keto-3-deoxy-(6-phosp 28.8 1.5E+02 0.0051 20.7 7.0 52 104-155 75-129 (286)
289 2is8_A Molybdopterin biosynthe 28.8 1.1E+02 0.0038 19.2 5.1 42 83-124 25-69 (164)
290 2pln_A HP1043, response regula 28.7 89 0.0031 18.1 7.1 44 106-157 51-95 (137)
291 3eb2_A Putative dihydrodipicol 28.5 1.5E+02 0.0053 20.8 8.8 61 96-156 76-138 (300)
292 4fbk_A DNA repair and telomere 28.3 81 0.0028 24.1 4.4 21 106-126 104-124 (472)
293 1t5o_A EIF2BD, translation ini 28.3 91 0.0031 22.7 4.6 45 111-156 219-266 (351)
294 4fbw_A DNA repair protein RAD3 28.2 62 0.0021 24.2 3.8 12 146-157 118-129 (417)
295 1mvl_A PPC decarboxylase athal 27.9 95 0.0032 20.7 4.3 27 5-31 18-44 (209)
296 3of5_A Dethiobiotin synthetase 27.9 68 0.0023 21.5 3.7 28 5-32 3-32 (228)
297 3r7f_A Aspartate carbamoyltran 27.8 1.1E+02 0.0038 21.8 4.9 41 103-152 78-118 (304)
298 4fe7_A Xylose operon regulator 27.4 1.5E+02 0.0051 21.5 5.8 64 79-155 41-104 (412)
299 3blx_B Isocitrate dehydrogenas 27.4 1.8E+02 0.0062 21.2 7.8 79 17-124 163-243 (354)
300 3rpe_A MDAB, modulator of drug 27.2 98 0.0034 20.7 4.3 46 80-128 48-94 (218)
301 3rqi_A Response regulator prot 27.1 1.2E+02 0.004 18.9 6.5 47 107-157 41-88 (184)
302 1x92_A APC5045, phosphoheptose 27.1 88 0.003 20.1 4.1 39 5-49 112-150 (199)
303 2a6a_A Hypothetical protein TM 27.0 61 0.0021 21.8 3.3 38 117-155 66-104 (218)
304 1jkx_A GART;, phosphoribosylgl 26.9 1.4E+02 0.0048 19.8 10.2 43 106-157 68-110 (212)
305 1i3c_A Response regulator RCP1 26.9 1E+02 0.0035 18.2 7.2 38 116-157 60-100 (149)
306 1zh2_A KDP operon transcriptio 26.7 89 0.0031 17.4 7.2 50 103-157 32-81 (121)
307 2q9u_A A-type flavoprotein; fl 26.7 1.8E+02 0.0063 21.0 7.9 22 106-129 298-319 (414)
308 4edg_A DNA primase; catalytic 26.4 70 0.0024 23.1 3.7 35 6-45 195-229 (329)
309 3jte_A Response regulator rece 26.2 1E+02 0.0035 17.9 7.9 51 103-157 34-86 (143)
310 3cfy_A Putative LUXO repressor 26.1 1E+02 0.0035 17.9 7.1 47 106-156 37-84 (137)
311 3mm4_A Histidine kinase homolo 26.1 1.3E+02 0.0046 19.2 7.8 38 116-157 118-160 (206)
312 2xdq_A Light-independent proto 26.0 32 0.0011 25.8 1.9 27 103-129 113-140 (460)
313 2au3_A DNA primase; zinc ribbo 25.2 1.1E+02 0.0038 22.6 4.7 34 7-45 288-321 (407)
314 3c3m_A Response regulator rece 25.2 1.1E+02 0.0037 17.8 7.9 46 107-156 37-85 (138)
315 3hdv_A Response regulator; PSI 25.1 1E+02 0.0036 17.7 7.5 51 103-157 38-90 (136)
316 1dos_A Aldolase class II; lyas 25.1 48 0.0017 24.3 2.6 55 100-154 36-107 (358)
317 2x9q_A Cyclodipeptide syntheta 24.8 79 0.0027 22.3 3.5 40 6-50 80-121 (289)
318 3o3m_A Alpha subunit 2-hydroxy 24.8 49 0.0017 24.5 2.7 54 104-157 321-374 (408)
319 3qvl_A Putative hydantoin race 24.7 73 0.0025 21.7 3.4 19 114-132 171-189 (245)
320 4ebj_A Aminoglycoside nucleoti 24.4 33 0.0011 24.0 1.5 51 73-127 18-69 (272)
321 2l2q_A PTS system, cellobiose- 24.2 1.1E+02 0.0038 17.7 5.6 35 116-156 50-84 (109)
322 2l8b_A Protein TRAI, DNA helic 24.1 1.4E+02 0.0047 19.7 4.4 40 106-151 138-177 (189)
323 3ecs_A Translation initiation 24.0 2E+02 0.0069 20.6 8.9 39 117-156 189-231 (315)
324 1wot_A Putative minimal nucleo 23.4 38 0.0013 19.4 1.5 67 82-156 14-80 (98)
325 3rfq_A Pterin-4-alpha-carbinol 23.0 1.6E+02 0.0055 19.1 5.3 42 82-124 52-96 (185)
326 3e61_A Putative transcriptiona 22.9 1.7E+02 0.0059 19.4 7.5 69 78-157 24-95 (277)
327 3t6k_A Response regulator rece 22.9 1.2E+02 0.0041 17.6 8.4 48 106-157 37-87 (136)
328 3egc_A Putative ribose operon 22.9 1.8E+02 0.0061 19.6 10.0 71 78-157 24-96 (291)
329 1m3s_A Hypothetical protein YC 22.9 1.4E+02 0.0049 18.7 4.5 39 5-49 78-116 (186)
330 3ovp_A Ribulose-phosphate 3-ep 22.9 1.5E+02 0.0052 19.9 4.7 52 85-139 105-156 (228)
331 2fyw_A Conserved hypothetical 22.8 76 0.0026 22.0 3.2 28 96-123 38-65 (267)
332 1zmr_A Phosphoglycerate kinase 22.7 1.1E+02 0.0039 22.6 4.2 46 111-156 45-94 (387)
333 3dbi_A Sugar-binding transcrip 22.6 2E+02 0.0068 20.0 9.6 70 79-156 80-151 (338)
334 3heb_A Response regulator rece 22.6 1.3E+02 0.0044 17.8 7.1 40 114-157 56-98 (152)
335 3a10_A Response regulator; pho 22.5 1.1E+02 0.0037 16.9 7.6 47 106-156 34-81 (116)
336 2yvt_A Hypothetical protein AQ 22.5 1.3E+02 0.0043 20.0 4.3 20 106-125 21-40 (260)
337 3bzc_A TEX; helix-turn-helix, 22.4 49 0.0017 27.1 2.4 47 106-156 372-421 (785)
338 2xxa_A Signal recognition part 22.3 2.5E+02 0.0085 21.0 8.7 36 7-47 101-137 (433)
339 3bvp_A INT, TP901-1 integrase; 22.3 1.4E+02 0.0047 18.0 5.7 50 105-156 59-110 (138)
340 2yva_A DNAA initiator-associat 22.3 1.2E+02 0.0042 19.3 4.1 39 5-49 108-146 (196)
341 2vxa_A Dodecin; flavoprotein, 22.2 1.1E+02 0.0036 16.7 3.7 45 1-50 1-45 (72)
342 2d1p_B TUSC, hypothetical UPF0 22.1 50 0.0017 19.6 1.9 38 6-49 1-42 (119)
343 3nvt_A 3-deoxy-D-arabino-heptu 22.0 2.4E+02 0.0083 20.8 9.4 103 18-155 154-256 (385)
344 1nmo_A Hypothetical protein YB 21.9 66 0.0023 22.0 2.7 22 103-124 42-63 (247)
345 1xrs_B D-lysine 5,6-aminomutas 21.9 73 0.0025 22.2 2.9 25 104-128 167-191 (262)
346 2g2c_A Putative molybdenum cof 21.5 1.6E+02 0.0055 18.5 4.6 36 88-124 38-76 (167)
347 2q62_A ARSH; alpha/beta, flavo 21.5 2E+02 0.0068 19.6 5.3 41 5-50 33-76 (247)
348 2ffh_A Protein (FFH); SRP54, s 21.4 2.6E+02 0.0089 20.9 9.7 22 109-130 172-193 (425)
349 3hzh_A Chemotaxis response reg 21.4 1.4E+02 0.0048 17.8 7.2 50 103-157 68-120 (157)
350 3o1i_D Periplasmic protein TOR 21.4 1.9E+02 0.0066 19.4 8.5 68 79-154 22-93 (304)
351 3kbq_A Protein TA0487; structu 21.4 1.7E+02 0.0059 18.8 4.7 41 82-124 26-69 (172)
352 3m9w_A D-xylose-binding peripl 21.3 2E+02 0.0069 19.6 9.9 71 80-157 20-92 (313)
353 2etv_A Iron(III) ABC transport 21.1 1E+02 0.0036 21.9 3.8 32 116-156 95-126 (346)
354 3r0j_A Possible two component 21.1 1.9E+02 0.0064 19.1 7.7 48 106-157 56-104 (250)
355 3d6n_B Aspartate carbamoyltran 21.0 1.9E+02 0.0066 20.4 5.0 42 103-153 76-118 (291)
356 3qk7_A Transcriptional regulat 21.0 2E+02 0.0068 19.4 9.7 70 78-156 26-96 (294)
357 1ka9_F Imidazole glycerol phos 21.0 1.7E+02 0.0059 19.5 4.7 49 106-154 154-202 (252)
358 2eq5_A 228AA long hypothetical 20.9 1.7E+02 0.0059 19.2 4.7 16 1-16 1-16 (228)
359 2hmc_A AGR_L_411P, dihydrodipi 20.8 2.4E+02 0.0083 20.3 6.5 60 96-155 95-158 (344)
360 3v7q_A Probable ribosomal prot 20.8 1.2E+02 0.004 17.4 3.3 21 107-127 25-45 (101)
361 8abp_A L-arabinose-binding pro 20.7 2E+02 0.0069 19.4 6.3 68 79-155 19-89 (306)
362 1a3w_A Pyruvate kinase; allost 20.6 1.9E+02 0.0066 22.2 5.2 44 105-157 382-426 (500)
363 3jy6_A Transcriptional regulat 20.6 2E+02 0.0067 19.2 10.2 70 78-157 23-94 (276)
364 2qjg_A Putative aldolase MJ040 20.5 2.1E+02 0.0071 19.4 7.5 41 107-155 169-209 (273)
365 2d1c_A Isocitrate dehydrogenas 20.5 3E+02 0.01 21.2 8.4 79 17-124 165-243 (496)
366 3psf_A Transcription elongatio 20.5 74 0.0025 27.0 3.1 48 107-157 568-623 (1030)
367 4drs_A Pyruvate kinase; glycol 20.3 2.3E+02 0.0079 22.0 5.6 45 104-157 411-456 (526)
368 3s81_A Putative aspartate race 20.3 1E+02 0.0036 21.3 3.5 39 107-153 89-127 (268)
369 1no5_A Hypothetical protein HI 20.2 22 0.00077 21.0 0.1 41 83-127 16-56 (114)
370 3hs3_A Ribose operon repressor 20.2 1.8E+02 0.0062 19.4 4.8 65 78-157 26-94 (277)
371 2w6r_A Imidazole glycerol phos 20.1 2.1E+02 0.0071 19.3 5.3 49 106-154 158-206 (266)
372 3psh_A Protein HI_1472; substr 20.0 2.2E+02 0.0076 19.8 5.3 34 115-157 82-115 (326)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.97 E-value=1.4e-30 Score=169.72 Aligned_cols=145 Identities=17% Similarity=0.275 Sum_probs=121.0
Q ss_pred CCCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHH
Q 031355 2 ATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV 81 (161)
Q Consensus 2 ~~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (161)
+.|++++||||+|+|+.+..++++|+.+|+.. + ++++++||.+......... ........+..++..++.+
T Consensus 1 s~~~~~~ILv~~D~s~~s~~al~~A~~la~~~-~----a~l~ll~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l 71 (146)
T 3s3t_A 1 SNARYTNILVPVDSSDAAQAAFTEAVNIAQRH-Q----ANLTALYVVDDSAYHTPAL----DPVLSELLDAEAAHAKDAM 71 (146)
T ss_dssp -CCCCCEEEEECCSSHHHHHHHHHHHHHHHHH-T----CEEEEEEEEECCCCCCGGG----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCccceEEEEcCCCHHHHHHHHHHHHHHHhc-C----CEEEEEEEecCcccccccc----ccccHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999985 7 8999999988754321100 0012233455666777888
Q ss_pred HHHHHHhhhcCCccEEEEEEcCChHhHHHH-HHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDARNILCE-AVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~-~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+++.+.+...|...+++.+..|++.+.|++ ++++.++||||||+++++.+.++++||++++++++++||||+||
T Consensus 72 ~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 72 RQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 888888877776258899999999999999 99999999999999999999999999999999999999999997
No 2
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.97 E-value=1.2e-29 Score=166.10 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=103.3
Q ss_pred CCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCccc-ccCCCCCcCcccccchHHHHHHHHHH
Q 031355 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVI-GLAGPGAVEVLPHVDSDFKKIAARVV 81 (161)
Q Consensus 3 ~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (161)
||++++||||+|+|+.+..++++|+.+|+.. + ++|+++||.+...... .+... .........+...+..++.+
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~la~~~-~----a~l~ll~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 76 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNLASQI-G----ARLSLIHVLDNIPMPDTPYGTA-IPLDTETTYDAMLDVEKQKL 76 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHHHHHH-T----CEEEEEEEEC--------CTTC-CCSSSCCCHHHHHHHHHHHH
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHHHhhc-C----CEEEEEEEEcCccccccccccc-cCcCHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999985 7 8999999988654310 11111 11112233344555555555
Q ss_pred HHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCCC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPK 158 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~~ 158 (161)
+++.+. .+...+++.+..|++.++|+++++++++||||||+++++.+. +++||++++++++++||||+||++.
T Consensus 77 ~~~~~~---~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~~~~ 149 (150)
T 3tnj_A 77 SQIGNT---LGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVRLRD 149 (150)
T ss_dssp HHHHHH---HTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEECCC
T ss_pred HHHHHH---cCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEeCCC
Confidence 555443 344335677889999999999999999999999999999999 9999999999999999999999764
No 3
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.97 E-value=6.7e-30 Score=166.58 Aligned_cols=145 Identities=23% Similarity=0.255 Sum_probs=119.7
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHH
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (161)
|+++||||+|+|+.+..++++|+.+|+.. + ++++++||.+.....................+..++..++.++++
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~-~----a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLT-G----AELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQA 75 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHH-C----CEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhc-C----CEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999985 7 899999999875422111111112223344566777888888888
Q ss_pred HHHhhhcCCc--cEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 85 KEICSSKSVH--DFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 85 ~~~~~~~~~~--~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
.+.+...|.. .+++.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++||||+|
T Consensus 76 ~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 76 KTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 8888877643 238899999999999999999999999999999999999999999999999999999986
No 4
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.1e-29 Score=167.37 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=116.6
Q ss_pred CCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCC-----CcCcccccchHHHHHH
Q 031355 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPG-----AVEVLPHVDSDFKKIA 77 (161)
Q Consensus 3 ~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 77 (161)
++++++||||+|+|+.+..++++|+.+|+.. + ++|+++||++............ .......+.+..++..
T Consensus 2 ~~m~~~ILv~vD~s~~s~~al~~A~~la~~~-~----a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T 2dum_A 2 IFMFRKVLFPTDFSEGAYRAVEVFEKRNKME-V----GEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEA 76 (170)
T ss_dssp --CCSEEEEECCSSHHHHHHHHHHHHHCCSC-C----SEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHH
T ss_pred ccccceEEEEecCCHHHHHHHHHHHHHHHhc-C----CEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHH
Confidence 3578999999999999999999999999985 7 8999999987543211100000 0011123344556677
Q ss_pred HHHHHHHHHHhhhcCCccEEE--EEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 78 ARVVEEAKEICSSKSVHDFVV--EVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~--~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
++.++++.+.+...+.. +++ .+..|++.+.|+++++++++||||||+++++.+.++++||++++|+++++|||||||
T Consensus 77 ~~~l~~~~~~~~~~g~~-~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~ 155 (170)
T 2dum_A 77 SRKLQEKAEEVKRAFRA-KNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK 155 (170)
T ss_dssp HHHHHHHHHHHHHHTTC-SEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHcCCc-eeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence 77788887777666653 666 888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 031355 156 RPKTK 160 (161)
Q Consensus 156 ~~~~~ 160 (161)
.....
T Consensus 156 ~~~~~ 160 (170)
T 2dum_A 156 EVDEN 160 (170)
T ss_dssp CCCCC
T ss_pred cCCcc
Confidence 76543
No 5
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.97 E-value=2.9e-29 Score=166.21 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=116.9
Q ss_pred CCCCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCC----cccccCCCC--C-cCc---ccccc
Q 031355 1 MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS----AVIGLAGPG--A-VEV---LPHVD 70 (161)
Q Consensus 1 ~~~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~----~~~~~~~~~--~-~~~---~~~~~ 70 (161)
|+. ++++||||+|+|+.+.+++++|+.+|+.. + ++|+++||++... ....+.... . ... ...+.
T Consensus 1 M~~-~~~~ILv~vD~s~~s~~al~~a~~la~~~-~----a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (162)
T 1mjh_A 1 MSV-MYKKILYPTDFSETAEIALKHVKAFKTLK-A----EEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELK 74 (162)
T ss_dssp --C-CCCEEEEECCSCHHHHHHHHHHHHTCCSS-C----CEEEEEEEEEGGGTC-----------------CHHHHHHHH
T ss_pred Ccc-ccceEEEEeCCCHHHHHHHHHHHHHHhhc-C----CeEEEEEEecCccccccccccccccccccccchhhhHHHHH
Confidence 443 68999999999999999999999999985 7 8999999987531 100010000 0 000 11233
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCc
Q 031355 71 SDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCT 150 (161)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~p 150 (161)
+..++..++.++++.+.+...|. ++++.+..|++.+.|++++++.++||||||+++++++.++++||++++|+++++||
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~g~-~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~p 153 (162)
T 1mjh_A 75 NKLTEEAKNKMENIKKELEDVGF-KVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKP 153 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-EEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-ceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCC
Confidence 44556677778888777776665 48888889999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC
Q 031355 151 VMIVKRPK 158 (161)
Q Consensus 151 vlvv~~~~ 158 (161)
||+||++.
T Consensus 154 Vlvv~~~~ 161 (162)
T 1mjh_A 154 VLVVKRKN 161 (162)
T ss_dssp EEEECCCC
T ss_pred EEEEeCCC
Confidence 99999753
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.96 E-value=4.3e-29 Score=164.49 Aligned_cols=142 Identities=19% Similarity=0.261 Sum_probs=118.4
Q ss_pred CCCCceeEEEEec--CChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHH
Q 031355 2 ATAETQTMVVGID--DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAAR 79 (161)
Q Consensus 2 ~~~~~~~ilv~~d--~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (161)
.++++++||||+| +|+.+..++++|..+|+.. + ++++++||++...... +. .......+..++..++
T Consensus 11 ~~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~-~----a~l~ll~v~~~~~~~~-~~-----~~~~~~~~~~~~~~~~ 79 (156)
T 3fg9_A 11 EPLVYRRILLTVDEDDNTSSERAFRYATTLAHDY-D----VPLGICSVLESEDINI-FD-----SLTPSKIQAKRKHVED 79 (156)
T ss_dssp SCCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHH-T----CCEEEEEEECCCCTTC-CC-----SSHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHhc-C----CEEEEEEEEeCCCccc-cc-----cCCHHHHHHHHHHHHH
Confidence 4678999999999 9999999999999999985 7 8999999998754321 11 1122344556667788
Q ss_pred HHHHHHHHhhhcCCccEEEEEEc-CChHhHHHHH-HHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 80 VVEEAKEICSSKSVHDFVVEVVE-GDARNILCEA-VEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~-a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
.++++.+.+...|...+++.+.. |++.++|+++ +++.++||||||+++++++. .++||++++|+++++||||+||
T Consensus 80 ~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 80 VVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCCEEEeC
Confidence 88888888877776458888999 9999999999 99999999999999999887 5899999999999999999997
No 7
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.96 E-value=4.7e-28 Score=159.59 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=112.7
Q ss_pred CCCceeEEEEecC-ChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHH
Q 031355 3 TAETQTMVVGIDD-SEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV 81 (161)
Q Consensus 3 ~~~~~~ilv~~d~-s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (161)
.|++++||||+|+ |+.+..++++|+.+|+.. + ++|+++||.+.... ..+...+..++.+
T Consensus 21 ~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~-~----a~l~llhV~~~~~~---------------~~~~~~~~~~~~l 80 (155)
T 3dlo_A 21 GMIYMPIVVAVDKKSDRAERVLRFAAEEARLR-G----VPVYVVHSLPGGGR---------------TKDEDIIEAKETL 80 (155)
T ss_dssp -CCCCCEEEECCSSSHHHHHHHHHHHHHHHHH-T----CCEEEEEEECCSTT---------------SCHHHHHHHHHHH
T ss_pred ccccCeEEEEECCCCHHHHHHHHHHHHHHHhc-C----CEEEEEEEEcCCCc---------------ccHHHHHHHHHHH
Confidence 5789999999999 999999999999999985 7 89999999885421 1144556677788
Q ss_pred HHHHHHhhhcCCccEE--EEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 82 EEAKEICSSKSVHDFV--VEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~--~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+++.+.+...+.. ++ +.+..|++.++|++++++.++||||||+++++++.++++||++++|+++++||||+|+
T Consensus 81 ~~~~~~~~~~g~~-~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 81 SWAVSIIRKEGAE-GEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp HHHHHHHHHTTCC-EEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHhcCCC-ceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 8888888776643 44 4456699999999999999999999999999999999999999999999999999996
No 8
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.96 E-value=3e-28 Score=161.74 Aligned_cols=146 Identities=22% Similarity=0.224 Sum_probs=109.7
Q ss_pred CCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEE--EecCCCCcccccCCCCCcCcccccchHHHHHHHHH
Q 031355 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIV--HARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARV 80 (161)
Q Consensus 3 ~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
..++++||||+|+|+.+..++++|+.+|+ . + ++|+++ ||.+.......... . ...+.+..++..++.
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~-~----a~l~ll~a~v~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 82 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-A-D----AKLIIASAYLPQHEDARAADIL-K----DESYKVTGTAPIYEI 82 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-T-T----SEEEEEEECCC-------------------------CCTHHHH
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-C-C----CEEEEEEeeeccCccccccccc-c----cHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999 6 7 899999 88765432101000 0 111222233445666
Q ss_pred HHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCCCC
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKT 159 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~~~ 159 (161)
++++.+.+...+...+++.+..|++.++|++++++.++||||||+++++.+.++++||++++|+++++||||+||++..
T Consensus 83 l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~~~~ 161 (163)
T 1tq8_A 83 LHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTTEG 161 (163)
T ss_dssp HHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECCC--
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeCCCC
Confidence 7777777766554338888999999999999999999999999999999999999999999999999999999997643
No 9
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.96 E-value=9.4e-28 Score=154.87 Aligned_cols=137 Identities=26% Similarity=0.342 Sum_probs=105.5
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHH
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (161)
++++||||+|+|+.+..++++|..+|+.. + ++++++||.++... .+... ..+.+.+..++..++.++++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~-~----a~l~ll~v~~~~~~--~~~~~----~~~~~~~~~~~~~~~~l~~~ 69 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAH-G----ARLIVVHAYEPVPD--YLGEP----FFEEALRRRLERAEGVLEEA 69 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHH-T----CEEEEEEEECC--------------------CHHHHHHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhc-C----CEEEEEEEecCCCc--ccccc----chHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999985 7 89999999874321 11110 01122234445556666555
Q ss_pred HHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
.+. .|..++++.+..|++.+.|++++++.++||||||+++++++.++++||++++++++++||||+||
T Consensus 70 ~~~---~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 70 RAL---TGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHH---HCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHH---cCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 443 34313566788999999999999999999999999999999999999999999999999999997
No 10
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.96 E-value=7.5e-28 Score=155.39 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=112.7
Q ss_pred ceeEEEEecCChhHHHHHHHHHHHh-hccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHH-HHHHHHHHH
Q 031355 6 TQTMVVGIDDSEQSTYALQWTLDHF-FANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFK-KIAARVVEE 83 (161)
Q Consensus 6 ~~~ilv~~d~s~~s~~al~~a~~la-~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 83 (161)
+++||||+|+|+.+..++++|..+| +.. + ++++++||.+......... .......+..+ +..++.+++
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~-~----a~l~ll~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDA-D----CTLTLIHVKPEFMLYGEAV-----LAAYDEIEMKEEEKAKLLTQK 70 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCT-T----EEEEEEEEECCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCC-C----CEEEEEEEecCCCcccccc-----cCcHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999 764 7 8999999998764321100 00112234444 677778888
Q ss_pred HHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 84 AKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+.+.+...+. ++++.+..|++.+.|+++++ ++||||||+++++++.+++ ||++++++++++||||+||
T Consensus 71 ~~~~~~~~g~-~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 71 FSTFFTEKGI-NPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHTTTC-CCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHHCCC-CeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 8888877665 48899999999999999999 9999999999999999999 9999999999999999997
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.95 E-value=1e-27 Score=160.67 Aligned_cols=151 Identities=25% Similarity=0.503 Sum_probs=103.7
Q ss_pred CCCceeEEEEecCCh---------hHHHHHHHHHHHhhcc--CCCCCCcEEEEEEecCCCCcccc-cCC-CCCcCccccc
Q 031355 3 TAETQTMVVGIDDSE---------QSTYALQWTLDHFFAN--STVNPPFKLVIVHARPSPSAVIG-LAG-PGAVEVLPHV 69 (161)
Q Consensus 3 ~~~~~~ilv~~d~s~---------~s~~al~~a~~la~~~--~~~~~~a~l~~l~v~~~~~~~~~-~~~-~~~~~~~~~~ 69 (161)
...+++||||+|+|+ .+..++++|+.++.+. ++ ++|+++||++....... ... .........+
T Consensus 2 ~~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~----a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 77 (175)
T 2gm3_A 2 GSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSD----FKILLLHVQVVDEDGFDDVDSIYASPEDFRDM 77 (175)
T ss_dssp ---CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTS----EEEEEEEEEC----------CCCCSHHHHHHH
T ss_pred CCCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCC----CEEEEEEEeecccccccccccccCCHHHHHHH
Confidence 456899999999999 9999999999987432 25 89999999865321110 000 0000011112
Q ss_pred chHHHHHHHHHHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCC
Q 031355 70 DSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHC 149 (161)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~ 149 (161)
.+...+..++.++++.+.+...+.. +++.+..|++.+.|++++++.++||||||+++++++.++++||++++|+++++|
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~ 156 (175)
T 2gm3_A 78 RQSNKAKGLHLLEFFVNKCHEIGVG-CEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAEC 156 (175)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTCE-EEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCc-eEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCC
Confidence 2233445666777777777666654 888889999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCC
Q 031355 150 TVMIVKRPK 158 (161)
Q Consensus 150 pvlvv~~~~ 158 (161)
|||+||.+.
T Consensus 157 pVlvv~~~~ 165 (175)
T 2gm3_A 157 PVMTIKRNA 165 (175)
T ss_dssp CEEEEECCG
T ss_pred CEEEEcCCc
Confidence 999999763
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.95 E-value=2.2e-27 Score=154.03 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=107.3
Q ss_pred ceeEEEEecCChh--HHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHH
Q 031355 6 TQTMVVGIDDSEQ--STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (161)
Q Consensus 6 ~~~ilv~~d~s~~--s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (161)
.++||||+|+|+. +..++++|..+|+.. + ++++++||.+............ ....+..++..++.++.
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~-~----a~l~ll~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 70 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARID-D----AEVHFLTVIPSLPYYASLGMAY-----TAELPGMDELREGSETQ 70 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHH-T----CEEEEEEEECC---------------------CHHHHHHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhc-C----CeEEEEEEecCCcccccccccc-----cchhhhHHHHHHHHHHH
Confidence 3789999999999 999999999999985 7 8999999998754321111100 00112234445556666
Q ss_pred HHHHhhhcCC--ccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 84 AKEICSSKSV--HDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 84 ~~~~~~~~~~--~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+.+.+.+.+. ..+++.+..|++.++|++++++.++||||||+++ +++.++++||++++++++++||||+||
T Consensus 71 l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 71 LKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 7777776643 3478889999999999999999999999999995 888999999999999999999999997
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.94 E-value=9.7e-26 Score=163.90 Aligned_cols=148 Identities=11% Similarity=0.076 Sum_probs=114.7
Q ss_pred CCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHH
Q 031355 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (161)
Q Consensus 3 ~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (161)
|+++++|||++|+|+.+..+++||+.+|+.. + ++|+++||.+..... ..............+...+..++.++
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~-~----a~l~ll~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYIVQRN-G----GRIKAFLPVYDLSYD--MTTLLSPDERNAMRKGVINQKTAWIK 76 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHHHHHH-C----CEEEEEEEECCGGGG--CTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCcccHHHHHHHHHHHHHc-C----CeEEEEEEecccchh--hccccChhhHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999986 7 899999998653321 11110111112222334445566777
Q ss_pred HHHHHhhhcCCccEEEEEE-cCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCCC
Q 031355 83 EAKEICSSKSVHDFVVEVV-EGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPK 158 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~~ 158 (161)
++.+.+...+. ++++.+. .|++.+.|.+++++.++||||||+++.+.+.++++||++++++++++||||+||+..
T Consensus 77 ~~~~~~~~~~v-~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 77 QQARYYLEAGI-QIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKE 152 (319)
T ss_dssp HHHHHHHHTTC-CEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSC
T ss_pred HHHHHHhhcCC-eEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcc
Confidence 77666665555 4888888 899999999999999999999999999999999999999999999999999999764
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.93 E-value=4.9e-26 Score=147.34 Aligned_cols=140 Identities=18% Similarity=0.168 Sum_probs=100.7
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHH
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (161)
++++||||+|+|+.+..++++|..+|+.. + ++++++||.+...... .... ........+...+..++.++++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~-~----a~l~ll~v~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~~~ 72 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRH-D----AKLSIIHVDVNFSDLY--TGLI-DVNMSSMQDRISTETQKALLDL 72 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHH-T----CEEEEEEEEECCGGGC--CCCE-EHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhc-C----CEEEEEEEecCchhhh--cccc-ccchHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999985 7 8999999985422110 0000 0000001111112233333333
Q ss_pred HHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCCC
Q 031355 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPK 158 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~~ 158 (161)
....+....++.+..|++.+.|++++++.++||||||++ ++++.+ +||++++++++++||||+||++.
T Consensus 73 ---~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 73 ---AESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp ---HHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEEEECCC
T ss_pred ---HHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEEeeCCC
Confidence 333354323567788999999999999999999999999 888877 49999999999999999999764
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.93 E-value=1.1e-25 Score=162.01 Aligned_cols=144 Identities=19% Similarity=0.189 Sum_probs=118.8
Q ss_pred CCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHH
Q 031355 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (161)
Q Consensus 3 ~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (161)
||++++||||+|+|+.+..++++|+.+|+.. + ++|+++||.+........ .......+.+..++..++.++
T Consensus 19 m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~-~----a~l~ll~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~ 89 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDFKKVG-V----EEIGVLFVINLTKLSTVS----GGIDIDHYIDEMSEKAEEVLP 89 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHHHHTT-C----CEEEEECCEECTTC---------CCCTTHHHHHHHHHHHHHHH
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHHHhhc-C----CEEEEEEEecCccccccc----ccccHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999985 7 899999998775432111 112233344566677788888
Q ss_pred HHHHHhhhcCCccEEE-EEE-cCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCCC
Q 031355 83 EAKEICSSKSVHDFVV-EVV-EGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPK 158 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~v~-~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~~ 158 (161)
++.+.+...|.. +++ .+. .|++.+.| ++++.++||||||+++.+.+.++++||++++++++++||||+||+..
T Consensus 90 ~~~~~~~~~g~~-~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 164 (294)
T 3loq_A 90 EVAQKIEAAGIK-AEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDM 164 (294)
T ss_dssp HHHHHHHHTTCE-EEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCT
T ss_pred HHHHHHHHcCCC-cceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCcc
Confidence 888888876654 777 677 89999999 99999999999999999999999999999999999999999999864
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.92 E-value=4.6e-24 Score=153.41 Aligned_cols=138 Identities=14% Similarity=0.236 Sum_probs=105.8
Q ss_pred CceeEEEEecCChh-------HHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHH
Q 031355 5 ETQTMVVGIDDSEQ-------STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIA 77 (161)
Q Consensus 5 ~~~~ilv~~d~s~~-------s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (161)
.+++||||+|+|+. +.+++++|..+|+.. + ++++++||++....... .+ . . ...+..++..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~-~----a~l~ll~v~~~~~~~~~--~~---~-~-~~~~~~~~~~ 200 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA-K----ATLHVISAHPSPMLSSA--DP---T-F-QLSETIEARY 200 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT-T----CEEEEEEEEC--------------C-H-HHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc-C----CeEEEEEEecCcccccc--Cc---h-h-HHHHHHHHHH
Confidence 57899999999998 999999999999985 7 89999999986543211 00 0 0 1222233333
Q ss_pred HHHHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 78 ARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
++.+ .+++++.+.....+.+..|++.+.|++++++.++||||||+++++++.++++||++++++++++||||+||++
T Consensus 201 ~~~l---~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 201 REAC---RTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp HHHH---HHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEECCH
T ss_pred HHHH---HHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEECCC
Confidence 3333 3344444553356778899999999999999999999999999999999999999999999999999999874
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.91 E-value=1.1e-23 Score=152.66 Aligned_cols=144 Identities=26% Similarity=0.362 Sum_probs=113.7
Q ss_pred CCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHH
Q 031355 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (161)
Q Consensus 3 ~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (161)
.+++++|||++|+|+.+..++++|+.+|+.. + ++|+++||.++.... .... .......+..++..++.++
T Consensus 16 ~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~-~----a~l~ll~v~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~l~ 85 (309)
T 3cis_A 16 GNSSLGIIVGIDDSPAAQVAVRWAARDAELR-K----IPLTLVHAVSPEVAT-WLEV----PLPPGVLRWQQDHGRHLID 85 (309)
T ss_dssp --CTTEEEEECCSSHHHHHHHHHHHHHHHHH-T----CCEEEEEECCCCCCC-TTCC----CCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCHHHHHHHHHHHHHHHhc-C----CcEEEEEEecCcccc-cccC----CCCchhhHHHHHHHHHHHH
Confidence 4578999999999999999999999999985 7 899999998732211 0000 0111223344556677777
Q ss_pred HHHHHhhhc----CCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCCC
Q 031355 83 EAKEICSSK----SVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPK 158 (161)
Q Consensus 83 ~~~~~~~~~----~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~~ 158 (161)
++.+.+... +..++++.+..|++.+.|+++++ ++||||||+++.+.+.++++||++++|+++++||||+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 163 (309)
T 3cis_A 86 DALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDED 163 (309)
T ss_dssp HHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTTC
T ss_pred HHHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCCc
Confidence 777777654 23458888999999999999997 999999999999999999999999999999999999999764
No 18
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.91 E-value=2.5e-24 Score=153.04 Aligned_cols=143 Identities=16% Similarity=0.119 Sum_probs=111.2
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCccccc-------chHHHHHHHH
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHV-------DSDFKKIAAR 79 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 79 (161)
++||||+|+|+.+..++++|+.+|+.. + ++++++||.+......... .+........ .+...+..++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~-~----a~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKL-S----APLTVLFVVDTRLARIPEL-LDFGALTVPVPVLRTELERALALRGEA 74 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHH-T----CCEEEEEEEEHHHHTHHHH-C-------CHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHh-C----CcEEEEEEeccCCcccccc-cCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999985 7 8999999986532110000 0000011111 2334556677
Q ss_pred HHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCC-cceeeeccchHHHHhhcCCCcEEEEcCCC
Q 031355 80 VVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYG-AIKRAVLGSVSDYCAHHAHCTVMIVKRPK 158 (161)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~-~~~~~~~gs~~~~ll~~~~~pvlvv~~~~ 158 (161)
.++++.+.+...|.. +++.+..|++.+.|+++ +.++||||||+++++ .+.++++||++++++++++||||+||+..
T Consensus 75 ~l~~~~~~~~~~g~~-~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~ 151 (268)
T 3ab8_A 75 VLERVRQSALAAGVA-VEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEP 151 (268)
T ss_dssp HHHHHHHHHHHTTCC-EEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSC
T ss_pred HHHHHHHHHHhCCCC-eEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCC
Confidence 788887777776654 88889999999999999 779999999999998 89999999999999999999999999754
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.91 E-value=3.3e-24 Score=154.11 Aligned_cols=125 Identities=10% Similarity=0.112 Sum_probs=105.4
Q ss_pred CCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHH
Q 031355 3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (161)
Q Consensus 3 ~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (161)
|+++++|||++|+|+.+..++++|+.+|+.. + ++|+++|+.++ +..++.++
T Consensus 4 M~~~~~ILv~~D~s~~s~~al~~A~~la~~~-~----a~l~ll~v~~~------------------------~~~~~~l~ 54 (290)
T 3mt0_A 4 MQAIRSILVVIEPDQLEGLALKRAQLIAGVT-Q----SHLHLLVCEKR------------------------RDHSAALN 54 (290)
T ss_dssp TTTCCEEEEECCSSCSCCHHHHHHHHHHHHH-C----CEEEEEEECSS------------------------SCCHHHHH
T ss_pred hhhhceEEEEeCCCccchHHHHHHHHHHHhc-C----CeEEEEEeeCc------------------------HHHHHHHH
Confidence 5678999999999999999999999999986 7 89999999872 01123334
Q ss_pred HHHHHhhhcCCccEEEEEE-cCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 83 EAKEICSSKSVHDFVVEVV-EGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
++.+.+...+. ++++.+. .|++.+.|.+++++.++||||||+++.+.+.+.++||++++++++++||||+||+.
T Consensus 55 ~~~~~~~~~~~-~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 55 DLAQELREEGY-SVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp HHHHHHHHTTC-CEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHhhCCC-eEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCC
Confidence 44444445454 4888887 57899999999999999999999999999999999999999999999999999954
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.91 E-value=1.8e-24 Score=139.48 Aligned_cols=132 Identities=16% Similarity=0.027 Sum_probs=100.4
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEec-CC-CCcc-cccCCCCCcCcccccchHHHHHHHHH
Q 031355 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHAR-PS-PSAV-IGLAGPGAVEVLPHVDSDFKKIAARV 80 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
.++++||||+|+|+.+..++++|..+|+.. + ++++++||. +. +... ...... . ......+...+..++.
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~-~----a~l~ll~v~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~ 73 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKL-G----AELDILAVLEDVYNLERANVTFGL-P--FPPEIKEESKKRIERR 73 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTT-C----CEEEEEEECHHHHHHHHHHHHHCC-C--CCTHHHHHHHHHHHHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHc-C----CeEEEEEEecccccccccccccCC-C--CChHHHHHHHHHHHHH
Confidence 468999999999999999999999999975 7 899999998 53 1000 000000 0 0012334445566666
Q ss_pred HHHHHHHh--hhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 81 VEEAKEIC--SSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 81 l~~~~~~~--~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
++++ +.+ ...+ .+++.+..|++.+.|++++++.++||||||++++ |++++++++++||||+||
T Consensus 74 l~~~-~~~~~~~~~--~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 74 LREV-WEKLTGSTE--IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHHH-HHHHHSCCC--CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEEEECC
T ss_pred HHHH-HHHhhccCC--cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCceEeeC
Confidence 7666 553 3334 4778888999999999999999999999999875 899999999999999986
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.91 E-value=2.4e-23 Score=149.90 Aligned_cols=126 Identities=19% Similarity=0.269 Sum_probs=109.5
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHH
Q 031355 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (161)
..+++|||++|+++.+.+++++|..+++.. + ++++++||.+... .++.+++
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~-~----~~l~ll~v~~~~~------------------------~~~~l~~ 218 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKT-G----GELHIIHVSEDGD------------------------KTADLRV 218 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHH-T----CEEEEEEECSSSC------------------------CHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhc-C----CEEEEEEEccCch------------------------HHHHHHH
Confidence 567899999999999999999999999975 7 8999999987632 1334455
Q ss_pred HHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCCCC
Q 031355 84 AKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKT 159 (161)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~~~ 159 (161)
+.+.+...+.. +++.+..|++.+.|.+++++.++||||||+++++++.++++||++++++++++||||+||++.+
T Consensus 219 ~~~~l~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~~ 293 (294)
T 3loq_A 219 MEEVIGAEGIE-VHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGDD 293 (294)
T ss_dssp HHHHHHHTTCC-EEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCTT
T ss_pred HHHHHHHcCCc-EEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCCC
Confidence 55566555654 8888999999999999999999999999999999999999999999999999999999998754
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.90 E-value=2.6e-23 Score=151.13 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=110.0
Q ss_pred CceeEEEEecCCh-------hHHHHHHHHHHHhhccC-CCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHH
Q 031355 5 ETQTMVVGIDDSE-------QSTYALQWTLDHFFANS-TVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKI 76 (161)
Q Consensus 5 ~~~~ilv~~d~s~-------~s~~al~~a~~la~~~~-~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (161)
.+++|||++|+|+ .+.+++++|..+++..+ + ++|+++||++.......... .......+.+..++.
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~----a~l~ll~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 228 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKD----PDVHLLSAYPVAPINIAIEL--PDFDPNLYNNALRGQ 228 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSS----CCEEEEEEECCCSCSCCTTC--TTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCC----CeEEEEEeecCcchhhhccC--CcccHHHHHHHHHHH
Confidence 5789999999998 67999999999999731 4 79999999987654321110 001111122223333
Q ss_pred HHHHHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 77 AARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.+ +.+.+++...+.......+..|++.+.|++++++.++||||||+++++++.++++||++++|+++++||||+||+
T Consensus 229 ~~---~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 229 HL---IAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKP 305 (319)
T ss_dssp HH---HHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred HH---HHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECC
Confidence 33 344445555565446677889999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 031355 157 PK 158 (161)
Q Consensus 157 ~~ 158 (161)
..
T Consensus 306 ~~ 307 (319)
T 3olq_A 306 DG 307 (319)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.90 E-value=1.3e-22 Score=147.05 Aligned_cols=139 Identities=22% Similarity=0.245 Sum_probs=107.4
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHH
Q 031355 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (161)
..+++|||++|+++.+..++++|..+|... + ++|+++||++..... . . .. ...+...+..++.+++
T Consensus 169 ~~~~~Ilv~~D~s~~s~~al~~a~~la~~~-~----a~l~ll~v~~~~~~~-~---~-~~----~~~~~~~~~~~~~l~~ 234 (309)
T 3cis_A 169 PQQAPVLVGVDGSSASELATAIAFDEASRR-N----VDLVALHAWSDVDVS-E---W-PG----IDWPATQSMAEQVLAE 234 (309)
T ss_dssp SCCCCEEEECCSSHHHHHHHHHHHHHHHHT-T----CCEEEEEESCSSCCT-T---C-SS----CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHHHhc-C----CEEEEEEEeeccccc-C---C-Cc----ccHHHHHHHHHHHHHH
Confidence 457899999999999999999999999985 7 899999998754321 0 0 00 0112333444444554
Q ss_pred HHHHhhh-cCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCCC
Q 031355 84 AKEICSS-KSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPK 158 (161)
Q Consensus 84 ~~~~~~~-~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~~ 158 (161)
+.+.+.. .+...+++.+..|++.+.|+++++ ++||||||+++++++.++++||++++|+++++||||+||++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~~ 308 (309)
T 3cis_A 235 RLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARESL 308 (309)
T ss_dssp HHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC--
T ss_pred HHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCCC
Confidence 4444433 223458888999999999999998 999999999999999999999999999999999999999753
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.85 E-value=1.8e-20 Score=133.08 Aligned_cols=116 Identities=23% Similarity=0.274 Sum_probs=98.1
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHH
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (161)
.+++||||+|+++.+.+++++|..++... + ++++++||++.. ...++.++++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~-~----a~l~ll~v~~~~-----------------------~~~~~~l~~~ 204 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARAL-G----LGVRVVSVHEDP-----------------------ARAEAWALEA 204 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHH-T----CCEEEEEECSSH-----------------------HHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcC-C----CEEEEEEEcCcH-----------------------HHHHHHHHHH
Confidence 56899999999999999999999999985 7 799999997652 1223445555
Q ss_pred HHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
.+.+...+.. +++.+..|++.++|.+++++. ||||||+ ++.++++||++++++++++||||++|
T Consensus 205 ~~~l~~~~~~-~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 205 EAYLRDHGVE-ASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHHHHTTCC-EEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHcCCc-eEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 6666665654 888888999999999999977 9999998 67788999999999999999999996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=96.71 E-value=0.047 Score=34.16 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=86.8
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHH
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKE 86 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (161)
.+|||-+...-.+....+....+... + +.+.+.++ .+..... ......+..+..+++.++....
T Consensus 2 ~~vlVlae~tl~~~dl~~vl~~l~~~--~--~~~~f~VL--VPa~~~~----------a~~~e~~~a~~~A~~~l~~sl~ 65 (138)
T 2iel_A 2 ARYLVVAHRTAKSPELAAKLKELLAQ--D--PEARFVLL--VPAVPPP----------GWVYEENEVRRRAEEEAAAAKR 65 (138)
T ss_dssp CEEEEECSTTTTCHHHHHHHHHHHHH--C--TTCEEEEE--EEEECCC----------CSCC--CHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCccCcHhHHHHHHHhhcC--C--CceEEEEE--ecCCCCc----------ccccChHHHHHHHHHHHHHHHH
Confidence 68889888776666666654555543 2 11344333 2221110 0111224566667777777777
Q ss_pred HhhhcCCccEE-EEEEcCChHhHHHHHHHhcC--CCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 87 ICSSKSVHDFV-VEVVEGDARNILCEAVEKHH--ASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 87 ~~~~~~~~~~~-~~v~~g~~~~~I~~~a~~~~--~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
.++..|.. .. -.+..++|...|.....+.+ +|=||+.... ...+++|.-..+.+.=+ ...||+=+
T Consensus 66 aL~~~G~~-a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~P-h~vs~~fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 66 ALEAQGIP-VEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLP-PGLSRWLRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp HHHTTTCC-CSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECC-TTTCHHHHTTHHHHGGG-GSSCEEEE
T ss_pred HHHHcCCc-ccccccCCCChHHHHHHHHHhcCCCCceEEEEcCC-chHHHHHhccHHHHHHh-cCCCEEEE
Confidence 88887876 55 88999999999999999999 9999998764 35566777778777777 89999865
No 26
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.63 E-value=0.054 Score=38.43 Aligned_cols=87 Identities=10% Similarity=0.080 Sum_probs=62.8
Q ss_pred cEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCC
Q 031355 40 FKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHAS 119 (161)
Q Consensus 40 a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~d 119 (161)
+++.++.|++. +...+.+++.++++.+.++- +.. .. .+ . .+..+|+..+ -.||
T Consensus 194 A~I~L~~vV~d--------------------e~a~~~a~~~l~~Lv~~~Ri-~a~-~~-vv-~-~~F~~il~~s--~~AD 246 (294)
T 3g40_A 194 ASLSFMTFAPT--------------------AIQAQAAENFLQSLAELARI-PNV-KM-QV-L-RENPIKSSKL--PFAS 246 (294)
T ss_dssp CEEEEEEECSS--------------------HHHHHHHHHHHHHHHHHHTC-CSC-EE-EE-E-SSCTTTSSSC--CCCS
T ss_pred CeEEEEEecCC--------------------HHHHHHHHHHHHHHHHHhcC-Cce-EE-Ee-c-CchHHHHhhC--cCCC
Confidence 79999999886 55667777777777776653 333 22 23 3 6666666666 4899
Q ss_pred EEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCCCC
Q 031355 120 ILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKT 159 (161)
Q Consensus 120 liVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~~~ 159 (161)
|+++|-.....+. +.++++..+....++++....
T Consensus 247 L~flGl~~~~df~------~~~~~~~~~~ssc~f~~dsg~ 280 (294)
T 3g40_A 247 LHIFSLDPNPDLD------LARHLMEKAGSSCIFALDSGE 280 (294)
T ss_dssp EEEEECCSSCCHH------HHHHHHHHHTSEEEEEECCSC
T ss_pred EEEEcCCCCCcHH------HHHHHHHhcCCeEEEEecCch
Confidence 9999987665554 668889999999999987643
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=95.59 E-value=0.15 Score=38.82 Aligned_cols=96 Identities=22% Similarity=0.335 Sum_probs=64.7
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHH
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (161)
...+|+|++++...|..++..+..+.... + .++.++||-..... ....+..+.+
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-~----~~v~avhvdhglrg---------------------~~s~~~~~~v 70 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEW-K----LQVIAAHVDHMFRG---------------------RESEEEMEFV 70 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTT-T----CBCEEEEEECTTCT---------------------HHHHHHHHHH
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHc-C----CeEEEEEEECCCCc---------------------cccHHHHHHH
Confidence 34679999999999999999988887764 6 68999999543210 1122334556
Q ss_pred HHHhhhcCCccEEEEEEc--------C-Ch--------HhHHHHHHHhcCCCEEEEecCC
Q 031355 85 KEICSSKSVHDFVVEVVE--------G-DA--------RNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~--------g-~~--------~~~I~~~a~~~~~dliVlg~~~ 127 (161)
+++++..|.. +.+.-.. | ++ ...+.+.+++.+++.|+.|++.
T Consensus 71 ~~~~~~lgi~-~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 71 KRFCVERRIL-CETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp HHHHHHTTCE-EEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred HHHHHHcCCc-EEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 6677777754 4333222 1 11 2346677888999999999874
No 28
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=94.98 E-value=0.21 Score=35.89 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=61.2
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcE-EEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHH
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFK-LVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~-l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (161)
..++++|+++++..|..++..+..+.... | .+ +.++|+..... ....+..+.
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~-g----~~~v~av~vd~g~r----------------------~~s~~~~~~ 75 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYF-S----LKEVALAHFNHMLR----------------------ESAERDEEF 75 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTT-T----CSEEEEEEEECCSS----------------------THHHHHHHH
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHc-C----CCEEEEEEEECCCC----------------------cccHHHHHH
Confidence 34689999999999999998888776653 5 57 99999954321 011222344
Q ss_pred HHHHhhhcCCccEEEEEEc--------C-Ch--------HhHHHHHHHhcCCCEEEEecCC
Q 031355 84 AKEICSSKSVHDFVVEVVE--------G-DA--------RNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~--------g-~~--------~~~I~~~a~~~~~dliVlg~~~ 127 (161)
++++++..|.. +.+.... | ++ ...+.+.+++.+++.|+.|.+.
T Consensus 76 v~~~a~~lgi~-~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 76 CKEFAKERNMK-IFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp HHHHHHHHTCC-EEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred HHHHHHHcCCc-EEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 55566666653 4333221 1 11 1245667888999999999874
No 29
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=94.24 E-value=0.27 Score=32.30 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=46.3
Q ss_pred HHHHHHhhhcCCccEEEEEEcC-ChHhH---HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEG-DARNI---LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~---I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
++..+.+++.|.. ++..|..- ...+. +.+.+++.+++.||.|..+...+. --+...+..||+-||..
T Consensus 39 ~~a~~~L~~~gI~-~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------GvvAa~T~~PVIGVPv~ 109 (181)
T 4b4k_A 39 KYACDILDELNIP-YEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------GMVAAKTNLPVIGVPVQ 109 (181)
T ss_dssp HHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------HHHHTTCCSCEEEEECC
T ss_pred HHHHHHHHHcCCC-eeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch--------hhHHhcCCCCEEEEecC
Confidence 4445556666764 88888875 33444 445556678899999987765544 23556789999999975
Q ss_pred C
Q 031355 158 K 158 (161)
Q Consensus 158 ~ 158 (161)
.
T Consensus 110 s 110 (181)
T 4b4k_A 110 S 110 (181)
T ss_dssp C
T ss_pred C
Confidence 4
No 30
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=93.89 E-value=0.51 Score=36.33 Aligned_cols=86 Identities=15% Similarity=0.068 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
-.+..||..|++.|... + .+|..|+++++.... ...........-+.+..+.+.+.+.|.
T Consensus 50 l~DN~AL~~A~~~a~~~-~----~pVl~vfildp~~~~------------~~~~~~r~~FL~~sL~dL~~~L~~lG~--- 109 (506)
T 3umv_A 50 LADNWALLHAAGLAAAS-A----SPLAVAFALFPRPFL------------LSARRRQLGFLLRGLRRLAADAAARHL--- 109 (506)
T ss_dssp STTCHHHHHHHHHHHHH-T----CCEEEEEECCCTTCG------------GGCCHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hhhcHHHHHHHHhhhhc-C----CCEEEEEeccchhhc------------cCCCHHHHHHHHHHHHHHHHHHHHcCC---
Confidence 35678999999988754 5 589999998875211 011233445566667777777777664
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEE
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVV 123 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVl 123 (161)
...+..|++.+. .+++++.+++.|+.
T Consensus 110 ~L~v~~G~p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 110 PFFLFTGGPAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp CEEEESSCTTHH-HHHHHHTTCSEEEE
T ss_pred ceEEEecChHHH-HHHHHhcCCCEEEe
Confidence 466788999999 99999999999997
No 31
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=93.53 E-value=0.59 Score=35.65 Aligned_cols=112 Identities=14% Similarity=0.078 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccEE
Q 031355 18 QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFV 97 (161)
Q Consensus 18 ~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (161)
.+..+|..|.+.+... + .+|..++++++.... .........-+.+..+.+.+.+.|. .
T Consensus 50 ~DN~aL~~A~~~a~~~-~----~~v~~vfi~dp~~~~--------------~~~~r~~Fl~~sL~~L~~~L~~~G~---~ 107 (482)
T 2xry_A 50 EDNWALLFSRAIAKEA-N----VPVVVVFCLTDEFLE--------------AGIRQYEFMLKGLQELEVSLSRKKI---P 107 (482)
T ss_dssp SSCHHHHHHHHHHHHH-T----SCEEEEEEECTTGGG--------------SCHHHHHHHHHHHHHHHHHHHHTTC---C
T ss_pred cccHHHHHHHHHHHHc-C----CcEEEEEEeChhhhc--------------cCHHHHHHHHHHHHHHHHHHHHcCC---c
Confidence 4677888888887654 4 489999998764321 1123334555666777777777664 3
Q ss_pred EEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 98 VEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 98 ~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
..+..|++.+.|.+.+++.+++.|+.-..- ....+ ...+.+....+|++..+..
T Consensus 108 L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~----~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 108 SFFLRGDPGEKISRFVKDYNAGTLVTDFSP-LRIKN----QWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp EEEEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHH----HHHHHHHHHCCSCEEEECC
T ss_pred EEEEeCCHHHHHHHHHHHcCCCEEEEeccc-chhHH----HHHHHHHHHcCCEEEEEeC
Confidence 556789999999999999999999986432 22111 1223344444777776643
No 32
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=93.42 E-value=0.59 Score=30.29 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=46.2
Q ss_pred HHHHHHHhhhcCCccEEEEEEcC-ChHhHHHHHH---HhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEG-DARNILCEAV---EKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a---~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.++....++..|.. ++..+..- ...+.+.+++ ++.+++.+|.+..+...+. --+...+.+||+-||.
T Consensus 21 ~~~a~~~l~~~gi~-~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 91 (166)
T 3oow_A 21 MKECCDILDNLGIG-YECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLP--------GMVAAKTTLPVLGVPV 91 (166)
T ss_dssp HHHHHHHHHHTTCE-EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------HHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHcCCC-EEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhH--------HHHHhccCCCEEEeec
Confidence 34555566666764 88887775 4455555554 4457899999987665443 3366678999999997
Q ss_pred CC
Q 031355 157 PK 158 (161)
Q Consensus 157 ~~ 158 (161)
..
T Consensus 92 ~~ 93 (166)
T 3oow_A 92 KS 93 (166)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 33
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=93.25 E-value=0.52 Score=30.71 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=44.5
Q ss_pred HHHHHHhhhcCCccEEEEEEcC-ChHhH---HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEG-DARNI---LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~---I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
++....++..|.. ++..|..- ...+. +.+.+++.+++.||.+..+...+. --+...+.+||+-||-+
T Consensus 29 ~~a~~~l~~~gi~-~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------gvvA~~t~~PVIgVPv~ 99 (173)
T 4grd_A 29 KHAVAILQEFGVP-YEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP--------GMLAAKTTVPVLGVPVA 99 (173)
T ss_dssp HHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH--------HHHHHHCCSCEEEEEEC
T ss_pred HHHHHHHHHcCCC-EEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch--------hhheecCCCCEEEEEcC
Confidence 4445555666764 88887775 34444 445555678999999887665443 23556789999999854
No 34
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=93.21 E-value=0.57 Score=30.07 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=48.0
Q ss_pred HHHHHHHhhhcCCccEEEEEEcC-ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEG-DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.++....++..|.. ++..+..- ...+.+.+++++...+.+|.+......+. --+...+.+||+-||.
T Consensus 15 ~~~a~~~l~~~gi~-~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lp--------gvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 15 AEKAVNILKEFGVE-FEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLP--------GVVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHH--------HHHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-eEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhH--------HHHHhccCCCEEEecC
Confidence 34455556666765 88888765 67788888888666699998877665443 3356678999999986
No 35
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=93.09 E-value=0.59 Score=30.39 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=45.8
Q ss_pred HHHHHHHhhhcCCccEEEEEEcC-ChH---hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEG-DAR---NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g-~~~---~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.++....++..|.. ++..|..- ... .++.+.+++.+++.+|.+......+. --+...+.+||+-||.
T Consensus 22 ~~~a~~~l~~~gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 92 (169)
T 3trh_A 22 METAFTELKSLGIP-FEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLA--------GTIAAHTLKPVIGVPM 92 (169)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHH--------HHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHcCCC-EEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------HHHHhcCCCCEEEeec
Confidence 34455556666765 88777774 334 44445566678999999887665443 3366678999999997
Q ss_pred C
Q 031355 157 P 157 (161)
Q Consensus 157 ~ 157 (161)
.
T Consensus 93 ~ 93 (169)
T 3trh_A 93 A 93 (169)
T ss_dssp C
T ss_pred C
Confidence 5
No 36
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=92.65 E-value=1.3 Score=34.46 Aligned_cols=129 Identities=10% Similarity=0.004 Sum_probs=78.7
Q ss_pred eeEEEEec--CChhHHHHHHHHHHHhhc--cCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHH
Q 031355 7 QTMVVGID--DSEQSTYALQWTLDHFFA--NSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE 82 (161)
Q Consensus 7 ~~ilv~~d--~s~~s~~al~~a~~la~~--~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (161)
..+|+=+- .--.+..+|..|++.+.. . + .+|..++++++..... ...........-+.+.
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~-~----~pv~~vfi~dp~~~~~-----------~~~~~~r~~Fl~~sL~ 92 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPG-R----YFVRPIFILDPGILDW-----------MQVGANRWRFLQQTLE 92 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTT-T----EEEEEEEEECTTGGGC-----------TTSCHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccC-C----CeEEEEEEECchhhcc-----------cCCCHHHHHHHHHHHH
Confidence 34455554 334677888888887754 2 3 5799999988743210 0111333345556667
Q ss_pred HHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.+.+.+.+.|. ...+..|++.+.|.+++++.+++-|+.-..- ...... .-.-..+++...+|++..+..
T Consensus 93 ~L~~~L~~~G~---~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~p~~~~-rd~~v~~~~~~~gi~~~~~~~ 161 (543)
T 2wq7_A 93 DLDNQLRKLNS---RLFVVRGKPAEVFPRIFKSWRVEMLTFETDI-EPYSVT-RDAAVQKLAKAEGVRVETHCS 161 (543)
T ss_dssp HHHHHHHHTTC---CCEEEESCHHHHHHHHHHHTTEEEEEEECCC-SHHHHH-HHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHcCCCEEEEecCc-CHHHHH-HHHHHHHHHHHcCCEEEEecC
Confidence 77777777664 3455679999999999999999999886431 121111 112223444555677766643
No 37
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=92.64 E-value=0.5 Score=30.88 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=45.5
Q ss_pred HHHHHHhhhcCCccEEEEEEcC-Ch---HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEG-DA---RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g-~~---~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
+++...++..|.. ++..|..- .. ..++.+.+++.+++.||.+......+. --+...+.+||+-||..
T Consensus 24 ~~a~~~L~~~gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 94 (174)
T 3lp6_A 24 ADAAAALAEFDIP-AEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP--------GMVAAATPLPVIGVPVP 94 (174)
T ss_dssp HHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHHHcCCC-EEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH--------HHHHhccCCCEEEeeCC
Confidence 4455556666765 88777764 33 445555566779999999887665443 33556789999999865
No 38
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=92.51 E-value=0.78 Score=29.94 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=45.1
Q ss_pred HHHHHHhhhcCCccEEEEEEcC-ChHhHHHHH---HHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEG-DARNILCEA---VEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~---a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
++....++..|.. ++..|..- ...+.+.++ +++.+++.||.+......+. --+...+.+||+-||..
T Consensus 29 ~~a~~~L~~~Gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 99 (174)
T 3kuu_A 29 QFAADVLTTLNVP-FHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLP--------GMLAAKTLVPVLGVPVQ 99 (174)
T ss_dssp HHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHH--------HHHHHTCSSCEEEEEEC
T ss_pred HHHHHHHHHcCCC-EEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------HHHHhccCCCEEEeeCC
Confidence 4455556666765 88887775 444555555 45578999999877665443 33566789999999865
No 39
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=92.49 E-value=2 Score=30.48 Aligned_cols=121 Identities=10% Similarity=0.102 Sum_probs=74.9
Q ss_pred eEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHH
Q 031355 8 TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEI 87 (161)
Q Consensus 8 ~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (161)
+|||++.........+++|..+.... | -++++++.+.... +.+.++ +..+++.
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~~~-G-----~ltv~~i~p~~~~-----------------~~l~~q----l~~l~~~ 74 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITYPK-G-----SVKLLGLAGNTDK-----------------ENLLSQ----LPSISEG 74 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHTTT-C-----EEEEEECC---CT-----------------TCHHHH----HHHHHHH
T ss_pred cEEEecCCchhhhhHHHHHHHhccCc-e-----eEEEEEEccCCCc-----------------cHHHHH----HHHHHHH
Confidence 59999988878999999999999987 6 9999999765321 111111 2555777
Q ss_pred hhhcCCccEEEEEEcCChHhHHHHHHHhc-----CCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 88 CSSKSVHDFVVEVVEGDARNILCEAVEKH-----HASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 88 ~~~~~~~~~~~~v~~g~~~~~I~~~a~~~-----~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
+++.+....-..+...++.+++....+.+ .++.|++|......-. --+..+..+ ++.....|++++..
T Consensus 75 l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~-~~y~~~i~~-~~~~~~nVlil~~~ 147 (294)
T 3g40_A 75 FQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRD-EEIREIIRK-ASMYRMGVLLFSKH 147 (294)
T ss_dssp HHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGH-HHHHHHHHH-HHHTTCEEEEEECC
T ss_pred HHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhh-HHHHHHHHH-HHHhCceEEEEecC
Confidence 77777764445555567888887776654 4678899876433211 112233332 33458899998753
No 40
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=92.47 E-value=0.82 Score=29.71 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=45.6
Q ss_pred HHHHHHhhhcCCccEEEEEEcC-ChHhHHHHHHH---hcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEG-DARNILCEAVE---KHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~---~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
+++...++..|.. ++..+..- ...+.+.++++ +.+++.||.+..+...+. --+...+.+||+-||..
T Consensus 28 ~~a~~~L~~~Gi~-~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 98 (170)
T 1xmp_A 28 KYACDILDELNIP-YEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------GMVAAKTNLPVIGVPVQ 98 (170)
T ss_dssp HHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHTTCCSCEEEEEEC
T ss_pred HHHHHHHHHcCCC-EEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------HHHHhccCCCEEEeeCC
Confidence 4445555666765 88888764 45555555554 556899998877665443 33566789999999965
Q ss_pred C
Q 031355 158 K 158 (161)
Q Consensus 158 ~ 158 (161)
.
T Consensus 99 ~ 99 (170)
T 1xmp_A 99 S 99 (170)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=92.13 E-value=0.52 Score=30.48 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=45.2
Q ss_pred HHHHHHHhhhcCCccEEEEEEcC-ChHhHHHHH---HHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEG-DARNILCEA---VEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~---a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.++....++..|.. ++..+..- ...+.+.++ +++.+++.+|.+..+...+. --+...+.+||+-||.
T Consensus 19 ~~~a~~~l~~~gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 89 (163)
T 3ors_A 19 MQESCNMLDYFEIP-YEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP--------GMVASLTTLPVIGVPI 89 (163)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-EEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------HHHHhccCCCEEEeeC
Confidence 34555566666765 88877774 444454444 55567899999877665443 3355678999999986
Q ss_pred C
Q 031355 157 P 157 (161)
Q Consensus 157 ~ 157 (161)
.
T Consensus 90 ~ 90 (163)
T 3ors_A 90 E 90 (163)
T ss_dssp C
T ss_pred C
Confidence 5
No 42
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=91.97 E-value=0.51 Score=31.08 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=45.3
Q ss_pred HHHHHHHhhhcCCccEEEEEEcC-ChHhHHHHH---HHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEG-DARNILCEA---VEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~---a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.+++...++..|.. ++..|..- ...+.+.++ +++.+++.||.+..+...+. --+...+.+||+-||.
T Consensus 29 ~~~a~~~L~~~Gi~-~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 99 (183)
T 1o4v_A 29 MKQAAEILEEFGID-YEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP--------GMVASITHLPVIGVPV 99 (183)
T ss_dssp HHHHHHHHHHTTCE-EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-eEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH--------HHHHhccCCCEEEeeC
Confidence 34455556666765 88887764 344444444 55567899998887665443 3355678999999996
Q ss_pred CC
Q 031355 157 PK 158 (161)
Q Consensus 157 ~~ 158 (161)
..
T Consensus 100 ~~ 101 (183)
T 1o4v_A 100 KT 101 (183)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 43
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=91.39 E-value=1.2 Score=28.65 Aligned_cols=68 Identities=6% Similarity=0.150 Sum_probs=44.8
Q ss_pred HHHHHHHhhhcCCccEEEEEEcC-ChHhHHHHHH---Hhc-CCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEG-DARNILCEAV---EKH-HASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a---~~~-~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
.++....++..|.. ++..+..- ...+.+.+++ ++. +++.||.+......+. --+...+.+||+-||
T Consensus 18 ~~~a~~~l~~~gi~-~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP 88 (159)
T 3rg8_A 18 AEKIASELKTFGIE-YAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALS--------GFVDGFVKGATIACP 88 (159)
T ss_dssp HHHHHHHHHHTTCE-EEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHH--------HHHHHHSSSCEEECC
T ss_pred HHHHHHHHHHcCCC-EEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhH--------HHHHhccCCCEEEee
Confidence 34455556666764 88777764 4455555554 443 5899999987665443 335567899999999
Q ss_pred CC
Q 031355 156 RP 157 (161)
Q Consensus 156 ~~ 157 (161)
..
T Consensus 89 ~~ 90 (159)
T 3rg8_A 89 PP 90 (159)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 44
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=91.27 E-value=1.2 Score=29.32 Aligned_cols=68 Identities=13% Similarity=0.246 Sum_probs=45.3
Q ss_pred HHHHHHhhhcCCccEEEEEEcC-ChHhHHHHHHH---hcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEG-DARNILCEAVE---KHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~---~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
++....++..|.. ++..|..- ...+.+.++++ +.+++.||.+..+...+. --+...+.+||+-||..
T Consensus 38 ~~a~~~L~~~Gi~-~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 108 (182)
T 1u11_A 38 RHADALLTELEIP-HETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP--------GMCAAWTRLPVLGVPVE 108 (182)
T ss_dssp HHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHHHcCCC-eEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH--------HHHHhccCCCEEEeeCC
Confidence 4445555666765 88887764 45555555554 456899998877665443 33566789999999865
Q ss_pred C
Q 031355 158 K 158 (161)
Q Consensus 158 ~ 158 (161)
.
T Consensus 109 ~ 109 (182)
T 1u11_A 109 S 109 (182)
T ss_dssp C
T ss_pred C
Confidence 3
No 45
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=91.11 E-value=0.67 Score=27.28 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=37.4
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCC-Cc---ceeeeccchHHHHhhcCCCcEEEEcCCCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGY-GA---IKRAVLGSVSDYCAHHAHCTVMIVKRPKT 159 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~-~~---~~~~~~gs~~~~ll~~~~~pvlvv~~~~~ 159 (161)
...+.|.+++++++++.||+|-+.. ++ ......-.+++.|-.. ++||..+-++..
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DERlT 96 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCCCC
Confidence 4578899999999999999996522 11 1111223456667666 899999877644
No 46
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=90.73 E-value=3.1 Score=29.09 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=51.3
Q ss_pred EEecCChhHHHHHHHHHHHhhccCCCCCCc--EEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHh
Q 031355 11 VGIDDSEQSTYALQWTLDHFFANSTVNPPF--KLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEIC 88 (161)
Q Consensus 11 v~~d~s~~s~~al~~a~~la~~~~~~~~~a--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (161)
++....+.+..+++.|.+++... | . +++++.+-+.. .++.+.. .
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~-g----~~~~V~av~~G~~~-------------------------~~~~lr~---a- 76 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESS-D----TDVEVVVVSVGPDR-------------------------VDESLRK---C- 76 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHC-S----SCCEEEEEEESCGG-------------------------GHHHHHH---H-
T ss_pred CCCccCHHHHHHHHHHHHHHHhc-C----CCceEEEEEeCchh-------------------------HHHHHHH---H-
Confidence 34445678999999999998864 5 4 89988875421 0122222 2
Q ss_pred hhcCCccEEEEEEc----C-C---hHhHHHHHHHhcCCCEEEEecCCCC
Q 031355 89 SSKSVHDFVVEVVE----G-D---ARNILCEAVEKHHASILVVGSHGYG 129 (161)
Q Consensus 89 ~~~~~~~~~~~v~~----g-~---~~~~I~~~a~~~~~dliVlg~~~~~ 129 (161)
...|.. --+++.. + + .+..|...+++.++|+|++|....+
T Consensus 77 la~GaD-~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 77 LAKGAD-RAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp HHTTCS-EEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred HhcCCC-EEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 122432 2222222 1 2 2456777888889999999987643
No 47
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=90.30 E-value=2.1 Score=30.92 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=30.8
Q ss_pred ceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 6 ~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
+.+++|++.+...|...+..+....... + .++.++|+-.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~-~----~~i~vv~vDt 84 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPG-K----LPFPVMHVDT 84 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTS-C----CSSCEEEECC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhcccc-C----CCEEEEEEEC
Confidence 4689999999999999999988886642 3 4677888843
No 48
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=88.24 E-value=0.88 Score=35.30 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhc---CC
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSK---SV 93 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~ 93 (161)
-.+..||..|++.+. . | .+|..|+|+++..... ...........-+.+..+.+.+.+. |.
T Consensus 16 l~DN~AL~~A~~~~~-~-g----~~vl~vfi~dp~~~~~-----------~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~ 78 (538)
T 3tvs_A 16 LHDNPALLAALADKD-Q-G----IALIPVFIFDGESAGT-----------KNVGYNRMRFLLDSLQDIDDQLQAATDGRG 78 (538)
T ss_dssp SSSCHHHHTTTGGGT-T-T----CBCCEEEEECSSSSCS-----------TTCCHHHHHHHHHHHHHHHHHGGGSCSSSS
T ss_pred hhhhHHHHHHHHhCC-C-C----CCEEEEEecChhhhcc-----------CCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 345667777766554 3 4 5899999988643210 0112334446666777787777776 53
Q ss_pred ccEEEEEEcCChHhHHHHHHHhcCCCEEEEec
Q 031355 94 HDFVVEVVEGDARNILCEAVEKHHASILVVGS 125 (161)
Q Consensus 94 ~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~ 125 (161)
...+..|++.+.|.+++++.+++.|+.-.
T Consensus 79 ---~L~v~~G~~~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 79 ---RLLVFEGEPAYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp ---CCEEEESCHHHHHHHHHHHHCEEEECEEC
T ss_pred ---eEEEEeCCHHHHHHHHHHHcCCCEEEEcc
Confidence 35567899999999999999999998753
No 49
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=87.17 E-value=5.2 Score=27.03 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=55.4
Q ss_pred ceeEEEEecC-----ChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHH
Q 031355 6 TQTMVVGIDD-----SEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARV 80 (161)
Q Consensus 6 ~~~ilv~~d~-----s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
+++|||-++- .+.+..++..|.+++... | .+++++-+-+... +.
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~-g----~~v~av~~G~~~~--------------------------~~ 51 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANEL-N----CQLEAVVAGTGLK--------------------------EI 51 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHH-T----CCEEEEEEESCCT--------------------------TT
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhc-C----CeEEEEEECCCHH--------------------------HH
Confidence 4578888873 467999999999999975 6 5888887754311 11
Q ss_pred HHHHHHHhhhcCCccEEEEEEc----C-C---hHhHHHHHHHhcCCCEEEEecC
Q 031355 81 VEEAKEICSSKSVHDFVVEVVE----G-D---ARNILCEAVEKHHASILVVGSH 126 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~----g-~---~~~~I~~~a~~~~~dliVlg~~ 126 (161)
.. + +..+|...+ +.+.. + + ....|.+.+++.++|+|++|..
T Consensus 52 ~~---~-~~~~Gad~v-~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t 100 (217)
T 3ih5_A 52 EK---Q-ILPYGVDKL-HVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGAT 100 (217)
T ss_dssp HH---H-HGGGTCSEE-EEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECS
T ss_pred HH---H-HHhcCCCEE-EEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11 1 222354322 22222 1 1 3567888999999999999974
No 50
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=86.83 E-value=7.6 Score=28.59 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=29.2
Q ss_pred CCCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 2 ATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 2 ~~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
.....++|+|++++...|..++..+.+ . | .++..+|+...
T Consensus 5 ~~~~~~kVlVa~SGGvDSsv~a~lL~~----~-G----~~V~~v~~~~~ 44 (376)
T 2hma_A 5 SDNSKTRVVVGMSGGVDSSVTALLLKE----Q-G----YDVIGIFMKNW 44 (376)
T ss_dssp CCGGGSEEEEECCSSHHHHHHHHHHHH----T-T----CEEEEEEEECC
T ss_pred hhCCCCeEEEEEeCHHHHHHHHHHHHH----c-C----CcEEEEEEECC
Confidence 344567899999999988877766543 2 4 58999988543
No 51
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=85.55 E-value=6.5 Score=26.58 Aligned_cols=89 Identities=11% Similarity=0.028 Sum_probs=48.5
Q ss_pred CCCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHH
Q 031355 2 ATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV 81 (161)
Q Consensus 2 ~~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (161)
+|....||.|-+.++.....++-.+..-.. . + +++.++-...+ ... .
T Consensus 4 ~~~~~~ri~vl~SG~gsnl~all~~~~~~~-~-~----~~I~~Vis~~~-~a~-----------------~--------- 50 (215)
T 3kcq_A 4 SMKKELRVGVLISGRGSNLEALAKAFSTEE-S-S----VVISCVISNNA-EAR-----------------G--------- 50 (215)
T ss_dssp ---CCEEEEEEESSCCHHHHHHHHHTCCC--C-S----EEEEEEEESCT-TCT-----------------H---------
T ss_pred CCCCCCEEEEEEECCcHHHHHHHHHHHcCC-C-C----cEEEEEEeCCc-chH-----------------H---------
Confidence 345567899999998777666655542211 1 2 45555433221 110 0
Q ss_pred HHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~ 127 (161)
.+++++.|.. +...-...-..+++.+..++.++|++|+...+
T Consensus 51 ---l~~A~~~gIp-~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 51 ---LLIAQSYGIP-TFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp ---HHHHHHTTCC-EEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred ---HHHHHHcCCC-EEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 1344555654 32211111123788999999999999998654
No 52
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=82.77 E-value=4.5 Score=30.39 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=33.6
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhc-cCCCCCCcEEEEEEecCC
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFA-NSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~-~~~~~~~a~l~~l~v~~~ 50 (161)
...+|+|++++...|..++..+..+... . | .++.++||-..
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~-g----~~v~avhvdhg 53 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENP-G----VALRAIHVHHG 53 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTST-T----CEEEEEEECCS
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcC-C----CeEEEEEEECC
Confidence 3468999999999999999988887765 3 5 69999999543
No 53
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=82.37 E-value=7.2 Score=29.98 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=32.2
Q ss_pred hHhHHHHHH-HhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 105 ARNILCEAV-EKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 105 ~~~~I~~~a-~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.+..+.+.+ +..++|.||+=.+..+. .+..-.++...++|||+....
T Consensus 59 ~~~~~~~~~n~~~~vdgvi~~~~TFs~------a~~~i~~l~~l~~PvL~~~~q 106 (500)
T 4f2d_A 59 EITAICRDANYDDRCAGLVVWLHTFSP------AKMWINGLTMLNKPLLQFHTQ 106 (500)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECCSCCC------THHHHHHHHHCCSCEEEEECC
T ss_pred HHHHHHHHhccccCCcEEEEeCCcCcc------HHHHHHHHHhcCCCEEEEeCC
Confidence 344555555 55689999998776554 334456777889999998643
No 54
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=82.32 E-value=0.97 Score=28.40 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=36.7
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCC-CCcce---eeeccchHHHHhhcCCCcEEEEcCCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHG-YGAIK---RAVLGSVSDYCAHHAHCTVMIVKRPK 158 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~-~~~~~---~~~~gs~~~~ll~~~~~pvlvv~~~~ 158 (161)
...+.|.+++++++++.||+|-+. .++.. ....-.+++.|-...++||..+-++.
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERl 98 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERL 98 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 457899999999999999999652 12211 11112455566555689999986543
No 55
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=82.18 E-value=3.1 Score=28.69 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 109 LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 109 I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+++.+++.+.|++|+.+....... ..-+++++....+|.+|+-.
T Consensus 56 ~~~~~~~~~pDfvI~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D 99 (283)
T 1qv9_A 56 ALDIAEDFEPDFIVYGGPNPAAPG----PSKAREMLADSEYPAVIIGD 99 (283)
T ss_dssp HHHHHHHHCCSEEEEECSCTTSHH----HHHHHHHHHTSSSCEEEEEE
T ss_pred hhhhhhhcCCCEEEEECCCCCCCC----chHHHHHHHhCCCCEEEEcC
Confidence 345568999999999988765332 35677899999999999854
No 56
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=82.04 E-value=12 Score=28.60 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=62.9
Q ss_pred eeEEEEec--CChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHH
Q 031355 7 QTMVVGID--DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (161)
Q Consensus 7 ~~ilv~~d--~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (161)
+.+|+=+- .--.+..+|..|++ . + .++..|+++++........ .............-+.+..+
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~----~-~----~~v~~vfi~dp~~~~~~~~------~~~~~~~~r~~Fl~~sL~~L 70 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALK----S-G----LAITAVYCYDPRQFAQTHQ------GFAKTGPWRSNFLQQSVQNL 70 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----T-T----SEEEEEEEECGGGGSBCTT------SCBSSCHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCcchHHHHHHHHh----c-C----CCEEEEEEECchhhccccc------ccCCCCHHHHHHHHHHHHHH
Confidence 34555553 33456777777753 2 2 2788888887643210000 00011233344556667777
Q ss_pred HHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecC
Q 031355 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~ 126 (161)
.+.+.+.|. ...+..|++.+.|.+.+++.+++-|+.-..
T Consensus 71 ~~~L~~~G~---~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 109 (489)
T 1np7_A 71 AESLQKVGN---KLLVTTGLPEQVIPQIAKQINAKTIYYHRE 109 (489)
T ss_dssp HHHHHHTTC---CEEEEESCHHHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHCCC---cEEEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 777777664 355678999999999999999998888643
No 57
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=81.90 E-value=4.2 Score=30.55 Aligned_cols=68 Identities=10% Similarity=0.111 Sum_probs=41.6
Q ss_pred HHHHHHHhhhcCCccEEEEEEcC-Ch---HhHHHHHHHhcCC-CEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEG-DA---RNILCEAVEKHHA-SILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g-~~---~~~I~~~a~~~~~-dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
.+++...++..|.. ++..|..- .. ...+.+.+++.++ +.||.++.+.+.+. .-+...+.+||+-||
T Consensus 281 ~~~a~~~l~~~gi~-~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lp--------gvva~~t~~PVIgvP 351 (425)
T 2h31_A 281 CEKIKKACGNFGIP-CELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLG--------PVMSGNTAYPVISCP 351 (425)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHH--------HHHHHHCSSCEEECC
T ss_pred HHHHHHHHHHcCCc-eEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchH--------hHHhccCCCCEEEee
Confidence 34455555566654 67666653 22 3444455556667 57777766554433 335567899999999
Q ss_pred CC
Q 031355 156 RP 157 (161)
Q Consensus 156 ~~ 157 (161)
..
T Consensus 352 ~~ 353 (425)
T 2h31_A 352 PL 353 (425)
T ss_dssp CC
T ss_pred Cc
Confidence 74
No 58
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=81.60 E-value=0.65 Score=29.63 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=35.7
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCC-Ccceeee---ccchHHHHhhcCCCcEEEEcCCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGY-GAIKRAV---LGSVSDYCAHHAHCTVMIVKRPK 158 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~-~~~~~~~---~gs~~~~ll~~~~~pvlvv~~~~ 158 (161)
...+.|.+.+++++++.||+|-.-. ++..... .-.++..+....++||..+-+..
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 4688999999999999999996521 1111110 11234455555689999987654
No 59
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=81.52 E-value=11 Score=26.16 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHHhhccCCCCCCc--EEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCC
Q 031355 16 SEQSTYALQWTLDHFFANSTVNPPF--KLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (161)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~a--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (161)
.+.+..+++.|.++... | . +++++.+-+.. .++.+..+ + ..|.
T Consensus 39 np~d~~Ale~A~~Lke~--g----~~~~V~av~~G~~~-------------------------a~~~lr~a---l-a~Ga 83 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK--K----LVKEVIAVSCGPAQ-------------------------CQETIRTA---L-AMGA 83 (255)
T ss_dssp CHHHHHHHHHHHHHHHT--T----SCSEEEEEEEESTT-------------------------HHHHHHHH---H-HHTC
T ss_pred CHHHHHHHHHHHHHHhc--C----CCceEEEEEeCChh-------------------------HHHHHHHH---H-hcCC
Confidence 45688999999999874 4 3 89988886531 11222222 1 1243
Q ss_pred ccEEEEEE------cC-C---hHhHHHHHHHhcCCCEEEEecCCCC
Q 031355 94 HDFVVEVV------EG-D---ARNILCEAVEKHHASILVVGSHGYG 129 (161)
Q Consensus 94 ~~~~~~v~------~g-~---~~~~I~~~a~~~~~dliVlg~~~~~ 129 (161)
. --+++. .+ + .+..|...+++.++|+|++|....+
T Consensus 84 D-~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 84 D-RGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp S-EEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred C-EEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 3 222332 12 2 3456777788889999999987644
No 60
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=81.45 E-value=4.4 Score=31.43 Aligned_cols=103 Identities=10% Similarity=0.079 Sum_probs=63.3
Q ss_pred eeEEEEe--cCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCccccc-C-CCCCcCcccccchHHHHHHHHHHH
Q 031355 7 QTMVVGI--DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGL-A-GPGAVEVLPHVDSDFKKIAARVVE 82 (161)
Q Consensus 7 ~~ilv~~--d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~ 82 (161)
+.+||=. |.--.+..||..|+. . + .+|..|+|+++....... . ..+ ............-+.+.
T Consensus 5 ~~~lvWFRrDLRl~DN~AL~~A~~----~-~----~~vlpvfi~dp~~~~~~~~~~~~g----~~~~g~~r~~Fl~~sL~ 71 (537)
T 3fy4_A 5 SGSLIWFRKGLRVHDNPALEYASK----G-S----EFMYPVFVIDPHYMESDPSAFSPG----SSRAGVNRIRFLLESLK 71 (537)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHT----T-C----SCEEEEEEECHHHHSCCTTSSSSB----CSSCBHHHHHHHHHHHH
T ss_pred CcEEEEeCCCcccchhHHHHHHHh----c-C----CCEEEEEEeChhhhcccccccccc----cccCCHHHHHHHHHHHH
Confidence 3344444 344466777777763 2 3 389999998753211000 0 000 00112334455566677
Q ss_pred HHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEec
Q 031355 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGS 125 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~ 125 (161)
.+.+.+.+.|. ...+..|++.+.|.+++++.+++-|+.-.
T Consensus 72 ~L~~~L~~~G~---~L~v~~G~~~~vl~~L~~~~~~~~V~~n~ 111 (537)
T 3fy4_A 72 DLDSSLKKLGS---RLLVFKGEPGEVLVRCLQEWKVKRLCFEY 111 (537)
T ss_dssp HHHHHHHHTTC---CCEEEESCHHHHHHHHHTTSCEEEEEECC
T ss_pred HHHHHHHHcCC---ceEEEECCHHHHHHHHHHHcCCCEEEEec
Confidence 77777777663 35567899999999999999999998864
No 61
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=80.66 E-value=12 Score=25.94 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=48.6
Q ss_pred cCChhHHHHHHHHHHHhhccCCCCCCc--EEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhc
Q 031355 14 DDSEQSTYALQWTLDHFFANSTVNPPF--KLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSK 91 (161)
Q Consensus 14 d~s~~s~~al~~a~~la~~~~~~~~~a--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 91 (161)
...+.+..+++.|.++... | . +++++.+-+.. .++.+..+ + ..
T Consensus 34 ~lnp~d~~Ale~A~~Lke~--g----~~~~V~av~~G~~~-------------------------a~~~lr~a---l-a~ 78 (252)
T 1efp_B 34 SMNPFDEIAVEEAIRLKEK--G----QAEEIIAVSIGVKQ-------------------------AAETLRTA---L-AM 78 (252)
T ss_dssp EECHHHHHHHHHHHHHHTT--T----SCSEEEEEEEESGG-------------------------GHHHHHHH---H-HH
T ss_pred cCCHHHHHHHHHHHHHHhc--C----CCceEEEEEeCChh-------------------------HHHHHHHH---H-hc
Confidence 3457889999999999874 4 3 89988876431 01222222 1 12
Q ss_pred CCccEEEEEE------cC-C---hHhHHHHHHHhcCCCEEEEecCCCC
Q 031355 92 SVHDFVVEVV------EG-D---ARNILCEAVEKHHASILVVGSHGYG 129 (161)
Q Consensus 92 ~~~~~~~~v~------~g-~---~~~~I~~~a~~~~~dliVlg~~~~~ 129 (161)
|.. --+++. .+ + .+..|...+++.++|+|++|....+
T Consensus 79 GaD-~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 79 GAD-RAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp TCS-EEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred CCC-EEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 433 222232 12 2 3456777788889999999987643
No 62
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=79.90 E-value=15 Score=28.35 Aligned_cols=102 Identities=8% Similarity=-0.000 Sum_probs=61.7
Q ss_pred eEEEEec--CChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHH
Q 031355 8 TMVVGID--DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (161)
Q Consensus 8 ~ilv~~d--~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (161)
..|+=+- .--.+..+|..|+.. + .+|..++++++........ . .............-+.+..+.
T Consensus 41 ~~l~WfrrDLRl~DN~AL~~A~~~-----~----~~v~~vfi~dp~~~~~~~~----~-~~~~~~~~r~~Fl~~sL~~L~ 106 (525)
T 2j4d_A 41 VTILWFRNDLRVLDNDALYKAWSS-----S----DTILPVYCLDPRLFHTTHF----F-NFPKTGALRGGFLMECLVDLR 106 (525)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHT-----C----SEEEEEEEECGGGGSBCTT----T-CCBSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcchhHHHHHHHhc-----C----CcEEEEEEECchhhccccc----c-cCCCCCHHHHHHHHHHHHHHH
Confidence 4455553 334566677766542 2 2788898987643210000 0 000112334445566667777
Q ss_pred HHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecC
Q 031355 86 EICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (161)
Q Consensus 86 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~ 126 (161)
+.+.+.|.. ..+..|++.+.|.+++++.+++-|+.-..
T Consensus 107 ~~L~~~G~~---L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 144 (525)
T 2j4d_A 107 KNLMKRGLN---LLIRSGKPEEILPSLAKDFGARTVFAHKE 144 (525)
T ss_dssp HHHHHTTCC---CEEEESCHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHcCCe---EEEEeCCHHHHHHHHHHHcCCCEEEEecc
Confidence 777776643 45567999999999999999999988643
No 63
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=79.34 E-value=7.7 Score=29.59 Aligned_cols=115 Identities=7% Similarity=0.023 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
-.+..+|..|++. . + +|..++++++..... ...........-+.+..+.+.+.+.|.
T Consensus 15 l~Dn~aL~~A~~~---~-~-----~v~~vfi~dp~~~~~-----------~~~~~~r~~fl~~sL~~L~~~L~~~G~--- 71 (484)
T 1owl_A 15 LSDNIGLAAARAQ---S-A-----QLIGLFCLDPQILQS-----------ADMAPARVAYLQGCLQELQQRYQQAGS--- 71 (484)
T ss_dssp SSSCHHHHHHHHH---C-S-----CEEEEEEECHHHHTC-----------TTCCHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred cchhHHHHHHHhc---C-C-----CEEEEEEEcchhhcC-----------CCCCHHHHHHHHHHHHHHHHHHHHCCC---
Confidence 3456667766652 2 3 788888887532110 001133334455666677777766664
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
...+..|++.+.|.+++++.+++.|+.-..- ....... -.-..+.+...+|++..+..
T Consensus 72 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~p~~~~r-d~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 72 RLLLLQGDPQHLIPQLAQQLQAEAVYWNQDI-EPYGRDR-DGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHHHH-HHHHHHHHHHTTCEEEEECC
T ss_pred eEEEEeCCHHHHHHHHHHHcCCCEEEEeccC-ChhHHHH-HHHHHHHHHHcCcEEEEecC
Confidence 3556679999999999999999999885432 2221111 12223344445777766643
No 64
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=79.09 E-value=13 Score=27.71 Aligned_cols=107 Identities=12% Similarity=0.020 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccEE
Q 031355 18 QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFV 97 (161)
Q Consensus 18 ~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (161)
.+..+|..|.+ . + +|..++++++.... . ........-+.+..+.+.+.+.|. .
T Consensus 15 ~Dn~aL~~A~~----~-~-----~v~~vfi~d~~~~~-------------~-~~~r~~fl~~sL~~l~~~L~~~g~---~ 67 (420)
T 2j07_A 15 HDHPALLEALA----R-G-----PVVGLVVLDPNNLK-------------T-TPRRRAWFLENVRALREAYRARGG---A 67 (420)
T ss_dssp TTCHHHHHHHT----T-S-----CEEEEEEECHHHHS-------------S-CHHHHHHHHHHHHHHHHHHHHTTC---C
T ss_pred cccHHHHHHHh----C-C-----CEEEEEEECCcccc-------------C-CHHHHHHHHHHHHHHHHHHHHCCC---e
Confidence 45556655543 2 3 67888887753210 1 133334455666777777777664 3
Q ss_pred EEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 98 VEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 98 ~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
..+..|++.+.|.+.+++.+++.|+.-..- ...... ..+.|-..++|++..+..
T Consensus 68 l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~----rd~~v~~~l~i~~~~~~~ 121 (420)
T 2j07_A 68 LWVLEGLPWEKVPEAARRLKAKAVYALTSH-TPYGRY----RDGRVREALPVPLHLLPA 121 (420)
T ss_dssp EEEEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHHH----HHHHHHHHCSSCEEEECC
T ss_pred EEEEeCCHHHHHHHHHHHcCCCEEEEeccc-ChhHHH----HHHHHHHHcCCeEEEeCC
Confidence 556789999999999999999999986432 222211 112232323777766653
No 65
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=78.26 E-value=6.1 Score=30.04 Aligned_cols=87 Identities=6% Similarity=0.040 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccEE
Q 031355 18 QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFV 97 (161)
Q Consensus 18 ~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (161)
.+..||..|++. .. + +|..|+|+++..... ...........-+.+..+.+.+.+.|..
T Consensus 14 ~DN~aL~~A~~~--~~-~-----~v~~vfi~dp~~~~~-----------~~~~~~r~~fl~~sL~~L~~~L~~~G~~--- 71 (471)
T 1dnp_A 14 HDNLALAAACRN--SS-A-----RVLALYIATPRQWAT-----------HNMSPRQAELINAQLNGLQIALAEKGIP--- 71 (471)
T ss_dssp TTCHHHHHHSSS--TT-S-----EEEEEEEECHHHHHH-----------TTCCHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred cchHHHHHHHhC--CC-C-----CEEEEEEECchhhcc-----------CCCCHHHHHHHHHHHHHHHHHHHHCCCe---
Confidence 345566666543 13 3 899999988632100 0011233345556667777777776643
Q ss_pred EEEE----cCChHhHHHHHHHhcCCCEEEEecC
Q 031355 98 VEVV----EGDARNILCEAVEKHHASILVVGSH 126 (161)
Q Consensus 98 ~~v~----~g~~~~~I~~~a~~~~~dliVlg~~ 126 (161)
..+. .|++.+.|.+.+++.+++.|+.-..
T Consensus 72 L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 72 LLFREVDDFVASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EEEEEccCCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 4455 7899999999999999999988543
No 66
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=77.15 E-value=5.4 Score=26.88 Aligned_cols=37 Identities=5% Similarity=0.085 Sum_probs=30.3
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v 47 (161)
..++|++++.++..+.++++..-.+.+. | ++++++--
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~~--g----~eV~vv~T 39 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQE--E----REVHFLIS 39 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHHT--T----CEEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC--C----CEEEEEEC
Confidence 4489999999999999999888888774 5 68877744
No 67
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=77.00 E-value=14 Score=24.59 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=26.4
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
.+|+|++++...|..++..+.... . ++.++|+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~--~-------~v~~v~vd~ 78 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR--P-------DIPVILTDT 78 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS--T-------TCEEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC--C-------CCeEEEeeC
Confidence 489999999999999888776653 2 567788754
No 68
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=75.92 E-value=13 Score=28.05 Aligned_cols=114 Identities=9% Similarity=0.057 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
-.+..||..|++ . + .+|..++++++...... ...........-+.+..+.+.+.+.|.
T Consensus 13 l~DN~aL~~A~~----~-~----~~v~~vfi~dp~~~~~~----------~~~~~~r~~Fl~~sL~~L~~~L~~~G~--- 70 (440)
T 2e0i_A 13 LEDNTGLNYALS----E-C----DRVIPVFIADPRQLINN----------PYKSEFAVSFMINSLLELDDELRKKGS--- 70 (440)
T ss_dssp SSSCHHHHHHHH----H-S----SEEEEEEEECHHHHSSC----------TTCCHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred cchhHHHHHHHh----c-C----CCEEEEEEeChhhhccC----------CcCCHHHHHHHHHHHHHHHHHHHHcCC---
Confidence 345667777765 2 2 38999999876321100 001133344556667777777777664
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
...+..|++.+.|.+.++ +++.|+.-..- ....... -.-..+.+...+|++..+..
T Consensus 71 ~L~v~~g~~~~~l~~l~~--~~~~v~~~~~~-~~~~~~r-d~~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 71 RLNVFFGEAEKVVSRFFN--KVDAIYVNEDY-TPFSISR-DEKIRKVCEENGIEFKAYED 126 (440)
T ss_dssp CCEEEESCHHHHHHHHCT--TCSEEEEECCC-SHHHHHH-HHHHHHHHHTTTCEEEEECC
T ss_pred eEEEEECCHHHHHHHHHc--CCCEEEEeccc-ChHHHHH-HHHHHHHHHHcCceEEEecC
Confidence 345567999999999999 99998885432 2222111 12223344555777776654
No 69
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=74.99 E-value=7 Score=25.90 Aligned_cols=40 Identities=5% Similarity=-0.023 Sum_probs=27.7
Q ss_pred CCCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 2 ATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 2 ~~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
++|.+++++|++.+...|..++..+. .. | .++.++|+...
T Consensus 2 ~~m~~~kv~v~~SGG~DS~~ll~ll~----~~-g----~~v~~~~v~~~ 41 (203)
T 3k32_A 2 NAMKLMDVHVLFSGGKDSSLSAVILK----KL-G----YNPHLITINFG 41 (203)
T ss_dssp ----CEEEEEECCCSHHHHHHHHHHH----HT-T----EEEEEEEEECS
T ss_pred CcccCCeEEEEEECcHHHHHHHHHHH----Hc-C----CCeEEEEEeCC
Confidence 45677899999999998888775543 23 5 58889988543
No 70
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=74.11 E-value=5.3 Score=26.09 Aligned_cols=112 Identities=12% Similarity=0.129 Sum_probs=61.2
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHH
Q 031355 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (161)
++.+||++++.++....++++..-.+.+. | ++++++---.-.... .. + .
T Consensus 3 ~m~k~IllgvTGs~aa~k~~~ll~~L~~~--g----~~V~vv~T~~A~~fi----------------~~------~---~ 51 (175)
T 3qjg_A 3 AMGENVLICLCGSVNSINISHYIIELKSK--F----DEVNVIASTNGRKFI----------------NG------E---I 51 (175)
T ss_dssp --CCEEEEEECSSGGGGGHHHHHHHHTTT--C----SEEEEEECTGGGGGS----------------CH------H---H
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHHHHC--C----CEEEEEECcCHHHHh----------------hH------H---H
Confidence 34589999999999998888887777663 5 687776432111100 10 0 1
Q ss_pred HHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeecc---chHHHHhhcCCCcEEEEc
Q 031355 84 AKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLG---SVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~g---s~~~~ll~~~~~pvlvv~ 155 (161)
++.+. + ++.... . ++.-..+..++ .+|++|+.-=..+.+.++-.| +....++....+||+++|
T Consensus 52 l~~l~---~--~v~~~~-~-~~~~~hi~l~~--~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 52 LKQFC---D--NYYDEF-E-DPFLNHVDIAN--KHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp HHHHC---S--CEECTT-T-CTTCCHHHHHH--TCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEE
T ss_pred HHHhc---C--CEEecC-C-CCccccccccc--hhCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEe
Confidence 22222 1 111110 1 12233455566 899999875443333332222 333345566799999998
No 71
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=72.87 E-value=29 Score=26.38 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=29.7
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
...++|+|++++...|..++.++.+. | .+|..+|+...
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~-----G----~eViavtvd~G 45 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK-----G----AVPYAYTANLG 45 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT-----T----CEEEEEEEECC
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc-----C----CEEEEEEEEcC
Confidence 45578999999999999888887552 4 58999988543
No 72
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=72.76 E-value=18 Score=23.88 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=27.3
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
..++++|++++...|..++..+.+. + .++..+|+...
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~~~-----~----~~v~~~~~~~~ 38 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWALKE-----F----EEVETVTFHYN 38 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHH-----C----SEEEEEEEESS
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHc-----C----CceEEEEEeCC
Confidence 3468999999999998887776543 2 37888888653
No 73
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=72.42 E-value=12 Score=21.74 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=28.6
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.++.++..++..+|++++...-.+. .+ -.+.+.+-...++|++++-.
T Consensus 35 ~~~al~~~~~~~~dlii~D~~~p~~-~g---~~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 35 GNEAVEMVEELQPDLILLDIMLPNK-DG---VEVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSTTT-HH---HHHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCCC-CH---HHHHHHHHhcCCCCEEEEEC
Confidence 3445566677899999998763321 11 12344454456789888754
No 74
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=71.37 E-value=13 Score=23.72 Aligned_cols=41 Identities=7% Similarity=-0.047 Sum_probs=28.5
Q ss_pred HHHhhhcCCccEEEEEEcC-ChHhHHHHHHHhcCCCEEEEecCCC
Q 031355 85 KEICSSKSVHDFVVEVVEG-DARNILCEAVEKHHASILVVGSHGY 128 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliVlg~~~~ 128 (161)
...++..|. ++..... .+.+.+.+.+++.++|+|.+.....
T Consensus 39 a~~l~~~G~---eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~ 80 (161)
T 2yxb_A 39 ARALRDAGF---EVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNG 80 (161)
T ss_dssp HHHHHHTTC---EEECCCSBCCHHHHHHHHHHTTCSEEEEEESSS
T ss_pred HHHHHHCCC---EEEECCCCCCHHHHHHHHHhcCCCEEEEEeech
Confidence 344555563 3333332 5889999999999999999987643
No 75
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=70.83 E-value=30 Score=25.82 Aligned_cols=37 Identities=11% Similarity=0.285 Sum_probs=28.3
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
..++++|++++...|..++.++.+. | .++..+|+...
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~-----G----~eV~av~vd~g 40 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ-----G----YDVIAYLANIG 40 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT-----T----EEEEEEEEESS
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc-----C----CEEEEEEEECC
Confidence 4578999999999998888777542 4 58889988543
No 76
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=70.59 E-value=12 Score=24.97 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecC-CCCcceeeeccchHHHHhhcCCCcEEE
Q 031355 75 KIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH-GYGAIKRAVLGSVSDYCAHHAHCTVMI 153 (161)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~-~~~~~~~~~~gs~~~~ll~~~~~pvlv 153 (161)
++.++.++.+.+.+++.+...+-.-...|.-+....+.. .+.++|++..+ +......+-+..-..+-|.....+|+.
T Consensus 26 eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 26 ENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp GGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 344555666666666666544444444466776677766 36899999865 333333455566677777788888775
Q ss_pred E
Q 031355 154 V 154 (161)
Q Consensus 154 v 154 (161)
-
T Consensus 104 ~ 104 (201)
T 1vp8_A 104 Q 104 (201)
T ss_dssp C
T ss_pred E
Confidence 4
No 77
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=70.23 E-value=31 Score=26.43 Aligned_cols=123 Identities=9% Similarity=-0.032 Sum_probs=69.6
Q ss_pred eEEEEec--CChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHH
Q 031355 8 TMVVGID--DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (161)
Q Consensus 8 ~ilv~~d--~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (161)
++|+=+- .--.+..+|..|++. + ++..|+++++..... ... ........-+.+..+.
T Consensus 13 ~~l~WfrrDLRl~DN~aL~~A~~~-----~-----~v~pvfi~dp~~~~~---------~~~--~~~~~~fl~~sL~~L~ 71 (509)
T 1u3d_A 13 CSIVWFRRDLRVEDNPALAAAVRA-----G-----PVIALFVWAPEEEGH---------YHP--GRVSRWWLKNSLAQLD 71 (509)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHHH-----S-----CEEEEEEECGGGGTT---------CCC--CHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCccchhHHHHHHHhC-----C-----CEEEEEEECchhccc---------CCc--chHHHHHHHHHHHHHH
Confidence 3455443 334566777777653 3 566777877542210 000 1112224556667777
Q ss_pred HHhhhcCCccEEEEEEc-CChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 86 EICSSKSVHDFVVEVVE-GDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 86 ~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+.+.+.|.. ..+.. |++.+.|.+.+++.+++-|+....- ....... -.-..+.+...+|++..+..
T Consensus 72 ~~L~~~G~~---L~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~-~p~~~~r-d~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 72 SSLRSLGTC---LITKRSTDSVASLLDVVKSTGASQIFFNHLY-DPLSLVR-DHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp HHHHHTTCC---EEEEECSCHHHHHHHHHHHHTCCEEEEECCC-SHHHHHH-HHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHCCCe---EEEEeCCCHHHHHHHHHHHcCCCEEEEeccc-CHHHHHH-HHHHHHHHHHcCcEEEEECC
Confidence 777776643 44555 6999999999999999999886431 2211111 11223445556777766653
No 78
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=69.02 E-value=17 Score=22.33 Aligned_cols=65 Identities=9% Similarity=0.046 Sum_probs=38.9
Q ss_pred HHHhhhcCCccEEEEEE-cCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-C-CCcEEEE
Q 031355 85 KEICSSKSVHDFVVEVV-EGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-A-HCTVMIV 154 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~-~~pvlvv 154 (161)
...++..|.. +.-. ..-+.+.+++.+++.++|+|.+......... .+..+.+.+-.. . .++|++=
T Consensus 24 ~~~l~~~G~~---Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 24 DHAFTNAGFN---VVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHTTCE---EEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHCCCE---EEECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEE
Confidence 3455555643 3322 2468999999999999999999876533322 223444444332 1 3666554
No 79
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=68.04 E-value=25 Score=23.71 Aligned_cols=85 Identities=15% Similarity=0.062 Sum_probs=49.8
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHH
Q 031355 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (161)
.+..||.|-+.++.....++-.+.. ... + +++.++...++ .+
T Consensus 10 ~~~~ri~vl~SG~gsnl~all~~~~--~~~-~----~eI~~Vis~~~--a~----------------------------- 51 (215)
T 3da8_A 10 SAPARLVVLASGTGSLLRSLLDAAV--GDY-P----ARVVAVGVDRE--CR----------------------------- 51 (215)
T ss_dssp CSSEEEEEEESSCCHHHHHHHHHSS--TTC-S----EEEEEEEESSC--CH-----------------------------
T ss_pred CCCcEEEEEEeCChHHHHHHHHHHh--ccC-C----CeEEEEEeCCc--hH-----------------------------
Confidence 3456899999998777776665542 222 3 57766533221 10
Q ss_pred HHHHhhhcCCccEEEEEEc--CC---hHhHHHHHHHhcCCCEEEEecCC
Q 031355 84 AKEICSSKSVHDFVVEVVE--GD---ARNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~--g~---~~~~I~~~a~~~~~dliVlg~~~ 127 (161)
..+.+++.|.. +...-.. .+ -.+++.+..++.++|++|+...+
T Consensus 52 ~~~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 52 AAEIAAEASVP-VFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp HHHHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHHcCCC-EEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 13445555654 3222111 11 14578889999999999997664
No 80
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=67.82 E-value=30 Score=24.64 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=47.8
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHH
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (161)
..+||.|-+.++.....++-.+.+--. . + +++.++-.-.+. +
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~g~-l-~----~~I~~Visn~~~--------------------------------~ 145 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHSDE-L-D----CDIACVISNHQD--------------------------------L 145 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHTTC-S-C----SEEEEEEESSST--------------------------------T
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHCCC-C-C----cEEEEEEECcHH--------------------------------H
Confidence 356788888877766666666544322 1 2 466555332220 1
Q ss_pred HHHhhhcCCccEEEE-EEcCC---hHhHHHHHHHhcCCCEEEEecCC
Q 031355 85 KEICSSKSVHDFVVE-VVEGD---ARNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~-v~~g~---~~~~I~~~a~~~~~dliVlg~~~ 127 (161)
+.++++.|.. +... ....+ -..++.+..++.++|++|+....
T Consensus 146 ~~~A~~~gIp-~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 146 RSMVEWHDIP-YYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp HHHHHTTTCC-EEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCC-EEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 1234455654 3221 11111 23578899999999999998664
No 81
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=67.23 E-value=29 Score=24.24 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=37.5
Q ss_pred HHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+..+++.+++.|.. +-+.+..-...+.+ .+ .+|++=+|+..-.... +-+++ ..+.+||++=..
T Consensus 64 L~~l~~~~~e~Glp-~~te~~d~~~~~~l----~~-~vd~~~IgA~~~rn~~------ll~~~-a~~~~PV~lK~G 126 (267)
T 2nwr_A 64 VKALRKVKEEFGLK-ITTDIHESWQAEPV----AE-VADIIQIPAFLCRQTD------LLLAA-AKTGRAVNVKKG 126 (267)
T ss_dssp HHHHHHHHHHHCCE-EEEECSSGGGHHHH----HT-TCSEEEECGGGTTCHH------HHHHH-HTTTSEEEEECC
T ss_pred HHHHHHHHHhcCCe-EEEecCCHHhHHHH----Hh-cCCEEEECcccccCHH------HHHHH-HcCCCcEEEeCC
Confidence 44455666666765 65555544444443 22 5899999986544432 33444 367888887654
No 82
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=66.45 E-value=16 Score=20.99 Aligned_cols=46 Identities=7% Similarity=0.102 Sum_probs=26.6
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEE
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIV 154 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv 154 (161)
.++..+..++..+|++++...-.+...+ -...+.+-.. ..+||+++
T Consensus 38 ~~~a~~~~~~~~~dlvi~d~~~~~~~~g---~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 38 GKGSVEQIRRDRPDLVVLAVDLSAGQNG---YLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCGGGCBH---HHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCH---HHHHHHHhcCccccCCCEEEE
Confidence 3444455566789999998653311111 1234444443 57899988
No 83
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=66.35 E-value=30 Score=23.99 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=72.7
Q ss_pred EEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhh
Q 031355 11 VGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSS 90 (161)
Q Consensus 11 v~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 90 (161)
|+-.+.-.+-..++..+++|+.. | .. ..-|..-+. ..+++ ++......++......-.+.-+..++..
T Consensus 33 IACGfHAGDp~~M~~tv~lA~~~-g----V~-IGAHPgypD-----l~GFG-RR~m~~s~~el~~~v~YQiGAL~a~a~~ 100 (250)
T 2dfa_A 33 LACGFHGGSPGRILEAVRLAKAH-G----VA-VGAHPGFPD-----LVGFG-RREMALSPEEVYADVLYQIGALSAFLKA 100 (250)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHT-T----CE-EEEECCCSC-----TTTTT-CSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCCCHHHHHHHHHHHHHc-C----Ce-EecCCCCCc-----ccCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444567788899999986 7 33 344443222 22222 2223333455566666666677777877
Q ss_pred cCCccEEEEEEcC----------ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEE
Q 031355 91 KSVHDFVVEVVEG----------DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVM 152 (161)
Q Consensus 91 ~~~~~~~~~v~~g----------~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvl 152 (161)
.|.. +.+.--+| ..++.|++.++..+.+|+++|.. ||...+.......|++
T Consensus 101 ~G~~-l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~----------gs~~~~~A~~~Gl~~~ 161 (250)
T 2dfa_A 101 EGLP-LHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLP----------GTVYEEEARKAGLRVV 161 (250)
T ss_dssp TTCC-CCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECT----------TSHHHHHHHHTTCCEE
T ss_pred cCCE-eEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC----------ChHHHHHHHHcCCcEE
Confidence 7754 55544443 35788999999999999999954 4455556666666665
No 84
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=66.21 E-value=19 Score=26.27 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhcCCccEEEEEEcCC----hHhHHHHHHHhcCCCEEE-EecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 80 VVEEAKEICSSKSVHDFVVEVVEGD----ARNILCEAVEKHHASILV-VGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~v~~g~----~~~~I~~~a~~~~~dliV-lg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
..+++.+.+.+.+.. +.+.+..|+ ..+.+.+.+++.++|+|| +|... .++++.-+.....+|++.|
T Consensus 46 ~~~~v~~~L~~~g~~-~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGs--------v~D~aK~iA~~~~~p~i~I 116 (370)
T 1jq5_A 46 AGHTIVNELKKGNIA-AEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGK--------TLDTAKAVADELDAYIVIV 116 (370)
T ss_dssp THHHHHHHHHTTTCE-EEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH--------HHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHcCCe-EEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChH--------HHHHHHHHHHhcCCCEEEe
Confidence 345555555555543 433455564 345677788889999988 55321 1334444444557899999
Q ss_pred cCC
Q 031355 155 KRP 157 (161)
Q Consensus 155 ~~~ 157 (161)
|-.
T Consensus 117 PTT 119 (370)
T 1jq5_A 117 PTA 119 (370)
T ss_dssp ESS
T ss_pred ccc
Confidence 854
No 85
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=66.18 E-value=27 Score=23.42 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=49.9
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHH
Q 031355 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE 83 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (161)
|...||.|-+.++.....++-.+..-.. . + +++.++....+ ... .
T Consensus 5 m~~~ri~vl~SG~gsnl~all~~~~~~~-l-~----~~I~~Visn~~-~a~-----------------~----------- 49 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSNMEALIRAAQAPG-F-P----AEIVAVFSDKA-EAG-----------------G----------- 49 (209)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHTSTT-C-S----EEEEEEEESCT-TCT-----------------H-----------
T ss_pred CCCccEEEEEECCcHHHHHHHHHHHcCC-C-C----cEEEEEEECCc-ccH-----------------H-----------
Confidence 5567899999998877776666653222 1 2 46655544221 110 0
Q ss_pred HHHHhhhcCCccEEEEEEc--CCh---HhHHHHHHHhcCCCEEEEecCC
Q 031355 84 AKEICSSKSVHDFVVEVVE--GDA---RNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~--g~~---~~~I~~~a~~~~~dliVlg~~~ 127 (161)
.+.+++.|.. +...-.. .+. .+++.+..++.++|++|+...+
T Consensus 50 -l~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 50 -LAKAEAAGIA-TQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp -HHHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred -HHHHHHcCCC-EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 1344555654 3221111 121 3688899999999999998654
No 86
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=66.15 E-value=32 Score=24.28 Aligned_cols=84 Identities=8% Similarity=0.100 Sum_probs=47.7
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHH
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (161)
...||.|-+.++.....++-.+.+--. . + +++.++-.-.+. +
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~-l-~----~~i~~Visn~~~--------------------------------~ 130 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRIGQ-L-G----MDVVAVVSNHPD--------------------------------L 130 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHTTS-S-C----CEEEEEEESSST--------------------------------T
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHCCC-C-C----cEEEEEEeCcHH--------------------------------H
Confidence 345788888887777666666554332 1 2 466555332220 0
Q ss_pred HHHhhhcCCccEEEE-EEcCC---hHhHHHHHHHhcCCCEEEEecCC
Q 031355 85 KEICSSKSVHDFVVE-VVEGD---ARNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~-v~~g~---~~~~I~~~a~~~~~dliVlg~~~ 127 (161)
..++++.|.. +... ....+ -..++.+..++.++|++|+....
T Consensus 131 ~~~A~~~gIp-~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 131 EPLAHWHKIP-YYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp HHHHHHTTCC-EEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHcCCC-EEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 1224455654 3321 11122 13478899999999999998664
No 87
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=65.82 E-value=31 Score=23.98 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=73.5
Q ss_pred EEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhh
Q 031355 11 VGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSS 90 (161)
Q Consensus 11 v~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 90 (161)
|+-.+.-.+-..++..+++|+.. | .. ..-|..-+. ..+++ ++......++......-.+.-+..++..
T Consensus 33 IACGfHAGDp~~M~~tv~lA~~~-g----V~-IGAHPgypD-----l~GFG-RR~m~~s~~el~~~v~YQiGAL~a~a~~ 100 (255)
T 1v6t_A 33 VACGWHAGDPLVMRKTVRLAKEN-D----VQ-VGAHPGYPD-----LMGFG-RRYMKLTPEEARNYILYQVGALYAFAKA 100 (255)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHT-T----CE-EEEECCCSC-----TTTTT-CSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCCCHHHHHHHHHHHHHc-C----Ce-EecCCCCCc-----ccCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444567788899999986 7 33 344443222 22222 2223334455666666666777888888
Q ss_pred cCCccEEEEEEcC----------ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEE
Q 031355 91 KSVHDFVVEVVEG----------DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVM 152 (161)
Q Consensus 91 ~~~~~~~~~v~~g----------~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvl 152 (161)
.|.. +.+.--+| ..++.|++.++..+.+|+++|.. ||...+.......|++
T Consensus 101 ~G~~-l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~----------gs~~~~~A~~~Gl~~~ 161 (255)
T 1v6t_A 101 EGLE-LQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLS----------NSRVADIAEEMGLKVA 161 (255)
T ss_dssp TTCC-EEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEET----------TCHHHHHHHHHTCCEE
T ss_pred cCCE-eEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC----------ChHHHHHHHHcCCcEE
Confidence 7764 76666664 34788999999999999999955 3444555555555554
No 88
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=65.73 E-value=19 Score=21.50 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=36.0
Q ss_pred HHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh---cCCCcEEEEcCC
Q 031355 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH---HAHCTVMIVKRP 157 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~---~~~~pvlvv~~~ 157 (161)
.+...+...+.. . .+..-.-.++.++..++..+|+|++...-.. ..+ -.+.+.+-. ...+||+++-..
T Consensus 20 ~l~~~L~~~~~~-~--~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~-~~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 20 LIRRVLDRKDIH-C--QLEFVDNGAKALYQVQQAKYDLIILDIGLPI-ANG---FEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHHTTCC-E--EEEEESSHHHHHHHHTTCCCSEEEECTTCGG-GCH---HHHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHHhcCCC-e--eEEEECCHHHHHHHhhcCCCCEEEEeCCCCC-CCH---HHHHHHHHhcccccCCCEEEEeCC
Confidence 344445544532 2 2333333444556667789999999865322 111 123344433 246888888654
No 89
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=65.22 E-value=8 Score=25.35 Aligned_cols=37 Identities=5% Similarity=-0.045 Sum_probs=29.2
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v 47 (161)
+++||++++.++....++.+..-.+.+. | ++++++--
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~~--g----~~V~vv~T 37 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQH--F----DEVNILFS 37 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTTT--S----SCEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC--C----CEEEEEEc
Confidence 4578999999999998998888888653 5 67777643
No 90
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=63.52 E-value=31 Score=23.19 Aligned_cols=85 Identities=5% Similarity=-0.009 Sum_probs=50.1
Q ss_pred ceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHH
Q 031355 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (161)
Q Consensus 6 ~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (161)
++||.|-++++.....++-.+..--.. . +++.++....+. ....
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~~~l--~----~eI~~Visn~~~------------------------------a~v~ 45 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKAGQL--P----CEVALLITDKPG------------------------------AKVV 45 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHTTCC--S----SEEEEEEESCSS------------------------------SHHH
T ss_pred CCEEEEEEeCCchHHHHHHHHHHcCCC--C----cEEEEEEECCCC------------------------------cHHH
Confidence 367999999887777777766544332 3 577666442211 0233
Q ss_pred HHhhhcCCccEEEEEEc--CCh---HhHHHHHHHhcCCCEEEEecCC
Q 031355 86 EICSSKSVHDFVVEVVE--GDA---RNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 86 ~~~~~~~~~~~~~~v~~--g~~---~~~I~~~a~~~~~dliVlg~~~ 127 (161)
+.+++.|.. +...-.. .+. ..++.+..++.++|++|+...+
T Consensus 46 ~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 46 ERVKVHEIP-VCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp HHHHTTTCC-EEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHcCCC-EEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 455555644 3211111 111 3578899999999999997654
No 91
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=63.51 E-value=19 Score=25.81 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=38.5
Q ss_pred HHHHHHHhhhcCCccEEEEEEcC-ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHh-hcCCCcEEEEcCC
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEG-DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCA-HHAHCTVMIVKRP 157 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll-~~~~~pvlvv~~~ 157 (161)
..++...+...+.. +....... ..+..+.+.+...++|+||+..-. + .+..+++.++ ....+|+.++|-.
T Consensus 44 ~~~i~~~L~~~g~~-~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGD-G-----Tv~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 44 LPDALIKLEKAGYE-TSAYATEKIGDATLEAERAMHENYDVLIAAGGD-G-----TLNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHHHTTEE-EEEEECCSTTHHHHHHHHHTTTTCSEEEEEECH-H-----HHHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHcCCe-EEEEEecCcchHHHHHHHHhhcCCCEEEEEcCc-h-----HHHHHHHHHHhCCCCCcEEEecCC
Confidence 34555566655532 44433333 345566665555678877764221 1 1234555554 2467899999865
No 92
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=62.99 E-value=35 Score=23.65 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=70.1
Q ss_pred CChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCc
Q 031355 15 DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVH 94 (161)
Q Consensus 15 ~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 94 (161)
+--.+-..++..+++|+.. | .. ..-|..-+.. .+++ ++......++......-.+..+..++...|..
T Consensus 32 fHAGDp~~M~~Tv~lA~~~-g----V~-IGAHPgypDl-----~GFG-RR~m~~s~~el~~~v~YQiGAL~a~a~~~G~~ 99 (252)
T 1xw8_A 32 FHAGDAQIMQACVREAIKN-G----VA-IGAHPSFPDR-----ENFG-RSAMQLPPETVYAQTLYQIGALATIARAQGGV 99 (252)
T ss_dssp SSSCCHHHHHHHHHHHHHH-T----CE-EEEECCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCHHHHHHHHHHHHHc-C----Ce-eecCCCCCcc-----cCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 3334556778888899986 6 23 3444432221 2222 22223334555666666667778888887764
Q ss_pred cEEEEEEcC----------ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEE
Q 031355 95 DFVVEVVEG----------DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVM 152 (161)
Q Consensus 95 ~~~~~v~~g----------~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvl 152 (161)
+.+.--+| ..++.|++.++..+.+|+++|.. ||...+.......|++
T Consensus 100 -l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~----------gs~~~~~A~~~Gl~~~ 156 (252)
T 1xw8_A 100 -MRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLA----------GSELIRAGKQYGLTTR 156 (252)
T ss_dssp -EEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEET----------TSHHHHHHHHTTCCEE
T ss_pred -eEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC----------ChHHHHHHHHcCCcEE
Confidence 66665554 34788999999999999999955 4455556666666665
No 93
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=62.81 E-value=23 Score=23.43 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.3
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~ 127 (161)
-|.+.+.+.+++.++|+|.+....
T Consensus 126 vp~~~l~~~~~~~~~d~v~lS~~~ 149 (210)
T 1y80_A 126 IEPGKFVEAVKKYQPDIVGMSALL 149 (210)
T ss_dssp BCHHHHHHHHHHHCCSEEEEECCS
T ss_pred CCHHHHHHHHHHcCCCEEEEeccc
Confidence 589999999999999999998753
No 94
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=62.50 E-value=20 Score=20.75 Aligned_cols=49 Identities=4% Similarity=-0.100 Sum_probs=29.3
Q ss_pred hHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh---cCCCcEEEEcCC
Q 031355 105 ARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH---HAHCTVMIVKRP 157 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~---~~~~pvlvv~~~ 157 (161)
-.++.++..++..+|+|++...-... .+ -.+.+.+-. ...+||+++-..
T Consensus 35 ~~~~a~~~l~~~~~dlii~D~~l~~~-~g---~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 35 SGTDALHAMSTRGYDAVFIDLNLPDT-SG---LALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp SHHHHHHHHHHSCCSEEEEESBCSSS-BH---HHHHHHHHHSCCSSCCEEEEEECC
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCC-CH---HHHHHHHHhhhccCCCCEEEEECC
Confidence 34455566677889999998753321 11 123444444 356889888654
No 95
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=61.23 E-value=40 Score=23.78 Aligned_cols=21 Identities=10% Similarity=0.252 Sum_probs=16.6
Q ss_pred hHHHHHHHhcCCCEEEEecCC
Q 031355 107 NILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~ 127 (161)
.++.+..++.++|++|+....
T Consensus 156 ~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 156 AAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp HHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEhhhhh
Confidence 467888888899999987653
No 96
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=61.15 E-value=26 Score=21.61 Aligned_cols=47 Identities=9% Similarity=-0.012 Sum_probs=28.3
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.++.++...+..+|+|++...-... .+ -.+.+.+-...++|++++-.
T Consensus 60 ~~~al~~l~~~~~dlvilD~~l~~~-~g---~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 60 GLEAVEKAIELKPDVITMDIEMPNL-NG---IEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSSS-CH---HHHHHHHHHHSCCEEEEEES
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCC-CH---HHHHHHHHhcCCceEEEEec
Confidence 3444455566789999998653321 11 13445555566788888754
No 97
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=60.76 E-value=24 Score=24.86 Aligned_cols=68 Identities=9% Similarity=0.084 Sum_probs=37.0
Q ss_pred HHHHHHhhhcCCccEEEEEEcC-ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh-cCCCcEEEEcCC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEG-DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH-HAHCTVMIVKRP 157 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~-~~~~pvlvv~~~ 157 (161)
.++...+...+.. ++...... ..+..+.+.+.+ ++|+||+..-. +. +..+...+.. ...+|+.++|-.
T Consensus 29 ~~i~~~l~~~~~~-~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GGD-GT-----l~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 29 TKIVPPLAAAFPD-LHILHTKEQGDATKYCQEFAS-KVDLIIVFGGD-GT-----VFECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHHHCSE-EEEEECCSTTHHHHHHHHHTT-TCSEEEEEECH-HH-----HHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHcCCe-EEEEEccCcchHHHHHHHhhc-CCCEEEEEccc-hH-----HHHHHHHHhhCCCCCcEEEecCC
Confidence 3444555555543 55444443 455666666544 78877764221 11 1234444544 267899999865
No 98
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=60.75 E-value=23 Score=20.91 Aligned_cols=50 Identities=6% Similarity=0.064 Sum_probs=29.7
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh---cCCCcEEEEcCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH---HAHCTVMIVKRP 157 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~---~~~~pvlvv~~~ 157 (161)
.-.++.++..++..+|+|++...-... .+ -.+.+.+-. ...+||+++-..
T Consensus 38 ~~~~~a~~~l~~~~~dlii~d~~l~~~-~g---~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 38 DSGGQCIDLLKKGFSGVVLLDIMMPGM-DG---WDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp SSHHHHHHHHHTCCCEEEEEESCCSSS-CH---HHHHHHHHHTTCCTTEEEEEEECT
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCC-CH---HHHHHHHHhhcccCCCCEEEEECC
Confidence 334555666677789999998653321 11 123444443 346899888544
No 99
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=60.46 E-value=33 Score=22.54 Aligned_cols=43 Identities=7% Similarity=-0.047 Sum_probs=24.0
Q ss_pred CCCCCceeEEEEecCC---hhHHHHHHHHHHHhhccCCCCCCcEEE-EEEecC
Q 031355 1 MATAETQTMVVGIDDS---EQSTYALQWTLDHFFANSTVNPPFKLV-IVHARP 49 (161)
Q Consensus 1 ~~~~~~~~ilv~~d~s---~~s~~al~~a~~la~~~~~~~~~a~l~-~l~v~~ 49 (161)
|++|...+||+-.... ..+...++++...+. . | +++. ++.+.+
T Consensus 1 m~~M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~-~-g----~~v~~~idL~~ 47 (199)
T 4hs4_A 1 MTTTSPLHFVTLLGSLRKASFNAAVARALPEIAP-E-G----IAITPLGSIGT 47 (199)
T ss_dssp ----CCEEEEEEECCCSTTCHHHHHHHHHHHHCC-T-T----EEEEECCCGGG
T ss_pred CCCCCCCEEEEEEcCCCCCChHHHHHHHHHHHcc-C-C----CEEEEEEehhh
Confidence 7777767777665432 346777777776664 3 4 6777 655543
No 100
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=60.32 E-value=42 Score=23.74 Aligned_cols=84 Identities=7% Similarity=0.084 Sum_probs=49.6
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHH
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEA 84 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (161)
..+||.|-+.++..+..++-.+.+--.. + +++.++-.-.+ ..
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~l--~----~~i~~Visn~~--~~------------------------------ 135 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKMGEL--K----MDIVGIVSNHP--DF------------------------------ 135 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHTSS--C----CEEEEEEESSS--TT------------------------------
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHcCCC--C----cEEEEEEeCcH--HH------------------------------
Confidence 3568999998887777777766554332 3 56665533221 10
Q ss_pred HHHhhhcCCccEEEE-EEcCC---hHhHHHHHHHhcCCCEEEEecCC
Q 031355 85 KEICSSKSVHDFVVE-VVEGD---ARNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~-v~~g~---~~~~I~~~a~~~~~dliVlg~~~ 127 (161)
..++++.|.. +... ....+ -..++.+..++.++|++|+....
T Consensus 136 ~~~A~~~gIp-~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 136 APLAAQHGLP-FRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp HHHHHHTTCC-EEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHcCCC-EEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 1224455654 3321 11122 13578899999999999998664
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=60.09 E-value=21 Score=20.06 Aligned_cols=48 Identities=4% Similarity=0.002 Sum_probs=28.1
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~~ 157 (161)
.+...+...+..+|++++...-... .+ -...+.+-.. ..+|++++-..
T Consensus 34 ~~~~~~~l~~~~~dlii~d~~~~~~-~~---~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 34 GSTALDQLDLLQPIVILMAWPPPDQ-SC---LLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHHHHCCSEEEEECSTTCC-TH---HHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCC-CH---HHHHHHHHhccccCCCCEEEEeCC
Confidence 3445555666789999998653321 11 1234444443 46888887554
No 102
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=60.02 E-value=8.7 Score=27.85 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=34.4
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCC-Ccc-eeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGY-GAI-KRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~-~~~-~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.+..+.++..+ ++|+||+|-.+. +.+ .-+++..+.+ .+..+++|++.|.+-
T Consensus 166 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~-Ai~~s~A~kV~v~N~ 218 (332)
T 2ppv_A 166 EPMNEAIEALE--QADLIVLGPGSLYTSVISNLCVKGISE-ALLRTSAPKLYVSNV 218 (332)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHH-HHHHCCSCEEEECCS
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHH-HHHhCCCCEEEEcCC
Confidence 45677888888 899999996542 222 2233444444 467789999988763
No 103
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=59.87 E-value=8.1 Score=28.15 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=34.0
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCC-Cc-ceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGY-GA-IKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~-~~-~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.+..+.++..+ ++|+||+|-.+. +. +..+++..+.+. +..+++|++.|.+
T Consensus 177 ~a~p~al~AI~--~AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~N 228 (341)
T 2p0y_A 177 QAVQPVIDAIM--AADQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICN 228 (341)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeC
Confidence 45667888888 899999996542 22 233444445554 6778999998865
No 104
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=59.52 E-value=40 Score=23.20 Aligned_cols=38 Identities=0% Similarity=-0.170 Sum_probs=29.1
Q ss_pred ceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 6 ~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
+.+++|++++...|...+..+..+... + .++.++|+..
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~--~----~~i~vv~iDt 78 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK--Y----YMPELLFIDT 78 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT--S----CCCEEEEECC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc--C----CCeeEEEecC
Confidence 457999999999999999988777653 1 2677888743
No 105
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=59.11 E-value=22 Score=23.40 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=27.7
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~ 46 (161)
+||++++.++..+.++.+..-.+.+. | ++++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~--g----~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL--D----FSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT--T----CEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC--C----CEEEEEE
Confidence 78999999999888888888877663 5 6887764
No 106
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=58.89 E-value=26 Score=20.87 Aligned_cols=48 Identities=8% Similarity=0.011 Sum_probs=28.4
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh---cCCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH---HAHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~---~~~~pvlvv~~~ 157 (161)
.++.++..++..+|+||+...-... .+ -.+.+.+-. ...+||+++-..
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l~~~-~g---~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANMPKI-SG---MDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSSS-CH---HHHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCCC-CH---HHHHHHHHcCcccCCCCEEEEeCC
Confidence 3444556666789999998653321 11 124444443 356899888543
No 107
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=58.75 E-value=36 Score=22.39 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=30.7
Q ss_pred EEEEEcCChHhHHHHHHH-hcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 97 VVEVVEGDARNILCEAVE-KHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~-~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
+..+..++..+.+...-+ ..++|.||-. |.++..|=.+.+.||+-++..
T Consensus 30 ~i~i~~~~l~~~v~~a~~~~~~~dVIISR------------Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 30 IPITKTASLTRASKIAFGLQDEVDAIISR------------GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp EEEEEECCHHHHHHHHHHHTTTCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred ceEEEECCHHHHHHHHHHhcCCCeEEEEC------------ChHHHHHHHhCCCCEEEEcCC
Confidence 344556654444332211 5688865543 677777777889999988754
No 108
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=57.65 E-value=14 Score=24.45 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=29.1
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 031355 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~ 46 (161)
...++|++++.++....++.+..-.+.+ . | +++.++-
T Consensus 6 l~~k~IllgvTGs~aa~k~~~l~~~L~~-~-g----~~V~vv~ 42 (194)
T 1p3y_1 6 LKDKKLLIGICGSISSVGISSYLLYFKS-F-F----KEIRVVM 42 (194)
T ss_dssp GGGCEEEEEECSCGGGGGTHHHHHHHTT-T-S----SEEEEEE
T ss_pred cCCCEEEEEEECHHHHHHHHHHHHHHHH-C-C----CEEEEEE
Confidence 4457999999999988888888877755 3 5 6887764
No 109
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=57.22 E-value=9.8 Score=27.48 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=35.0
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCC-Ccc-eeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGY-GAI-KRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~-~~~-~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.+..+.++..+ ++|+||+|-.+. +.+ .-+++..+.+. +..+++|++.|.+-
T Consensus 167 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~Nl 219 (323)
T 2o2z_A 167 KPLREGLEAIR--KADVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICNV 219 (323)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECCS
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCC
Confidence 35677888888 899999996542 223 23444555554 67789999988654
No 110
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=57.08 E-value=14 Score=17.98 Aligned_cols=25 Identities=4% Similarity=0.127 Sum_probs=19.3
Q ss_pred EEEEEEcC-ChHhHHHHHHHhcCCCE
Q 031355 96 FVVEVVEG-DARNILCEAVEKHHASI 120 (161)
Q Consensus 96 ~~~~v~~g-~~~~~I~~~a~~~~~dl 120 (161)
+..+.... +..++|+++|++.+.|-
T Consensus 12 vslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 12 VSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eEEEEeeCCchhHHHHHHHHHccchh
Confidence 55555554 78999999999988874
No 111
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=56.91 E-value=50 Score=23.51 Aligned_cols=61 Identities=10% Similarity=-0.058 Sum_probs=37.6
Q ss_pred ccEEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 94 HDFVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 94 ~~~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
.++-..+.. +..+. +.+.|++.++|-+++...-......--+-..-..|...++.||++..
T Consensus 82 vpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 82 ATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp SEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 335455555 65555 46779999999999987643322211112233457778899999864
No 112
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=56.53 E-value=49 Score=23.33 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=16.0
Q ss_pred hHHHHHHHhcCCCEEEEecCC
Q 031355 107 NILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~ 127 (161)
.++.+..++.++|++|+....
T Consensus 155 ~~~~~~l~~~~~Dlivlagym 175 (287)
T 3nrb_A 155 SQIKNIVTQSQADLIVLARYM 175 (287)
T ss_dssp HHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHHHHhCCCEEEhhhhh
Confidence 467788888888888887553
No 113
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=56.23 E-value=9.3 Score=27.63 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=33.9
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCC-Cc-ceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGY-GA-IKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~-~~-~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.+..+.++..+ ++|+||+|-.+. +. +..+++..+.+. +.++++|++.|.+
T Consensus 173 ~a~p~al~AI~--~AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 224 (326)
T 2q7x_A 173 LASRRVVQTIL--ESDMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCN 224 (326)
T ss_dssp CBCSHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEecc
Confidence 35577888888 899999996542 22 233344445554 6778999998865
No 114
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=55.99 E-value=48 Score=25.16 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=32.5
Q ss_pred CCccEEEEEEcCChHhHHHHH--HHhcCCCEEEEecC-CCCcceeeeccch
Q 031355 92 SVHDFVVEVVEGDARNILCEA--VEKHHASILVVGSH-GYGAIKRAVLGSV 139 (161)
Q Consensus 92 ~~~~~~~~v~~g~~~~~I~~~--a~~~~~dliVlg~~-~~~~~~~~~~gs~ 139 (161)
+..-+.+.|..|+..+.|.+. |.++++|.|.+-+. +.+-+.....|.+
T Consensus 149 ~~p~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~GaT 199 (516)
T 1xrs_A 149 SGPLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGAT 199 (516)
T ss_dssp SSCEEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCC
T ss_pred CCCEEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCCCC
Confidence 444477778889999998854 89999999977543 3444444444433
No 115
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=55.42 E-value=29 Score=20.26 Aligned_cols=69 Identities=9% Similarity=0.026 Sum_probs=35.0
Q ss_pred HHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHh-------cCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcE
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDARNILCEAVEK-------HHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTV 151 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~-------~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pv 151 (161)
+.+...+...|.. .... ...+. ++..+...+ ..+|++++...-.. ..+ -...+.+-.. ..+|+
T Consensus 16 ~~l~~~L~~~~~~-~~v~-~~~~~-~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g---~~~~~~l~~~~~~~~~pi 88 (140)
T 1k68_A 16 RLIQEALANSTVP-HEVV-TVRDG-MEAMAYLRQEGEYANASRPDLILLXLNLPK-KDG---REVLAEIKSDPTLKRIPV 88 (140)
T ss_dssp HHHHHHHHTCSSC-CEEE-EECSH-HHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCH---HHHHHHHHHSTTGGGSCE
T ss_pred HHHHHHHHhcCCC-ceEE-EECCH-HHHHHHHHcccccccCCCCcEEEEecCCCc-ccH---HHHHHHHHcCcccccccE
Confidence 3444555555542 1221 22333 444455554 78999999865332 111 1234444443 46888
Q ss_pred EEEcCC
Q 031355 152 MIVKRP 157 (161)
Q Consensus 152 lvv~~~ 157 (161)
+++-..
T Consensus 89 i~ls~~ 94 (140)
T 1k68_A 89 VVLSTS 94 (140)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 888543
No 116
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=55.28 E-value=45 Score=25.72 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=27.1
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
++++|++++...|..++..+.+. . | .+++++|+..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~-G----~~v~av~vd~ 265 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---I-G----DQLVCVLVDT 265 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---H-G----GGEEEEEECC
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---h-C----CeEEEEEecc
Confidence 68999999999888887776554 2 4 4788999854
No 117
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=55.04 E-value=32 Score=20.73 Aligned_cols=67 Identities=6% Similarity=0.078 Sum_probs=35.1
Q ss_pred HHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh-cCCCcEEEEcCC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH-HAHCTVMIVKRP 157 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~-~~~~pvlvv~~~ 157 (161)
..+...+...|. ... ...+ .++.++..++..+|+|++...-... .+ -.+.+.+-. ...+||+++-..
T Consensus 28 ~~l~~~L~~~g~---~v~-~~~~-~~~a~~~l~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 28 QRLQQLLSPLPY---TLH-FARD-ATQALQLLASREVDLVISAAHLPQM-DG---PTLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHHTTSSC---EEE-EESS-HHHHHHHHHHSCCSEEEEESCCSSS-CH---HHHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHHhcccCc---EEE-EECC-HHHHHHHHHcCCCCEEEEeCCCCcC-cH---HHHHHHHHhHCCCCeEEEEECC
Confidence 344455555453 222 2233 3444555667799999998763321 11 123333333 246888888654
No 118
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=54.43 E-value=44 Score=23.88 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=36.8
Q ss_pred HHHHHhhhcCCccEEEEEEcC-ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh---cCCCcEEEEcCC
Q 031355 83 EAKEICSSKSVHDFVVEVVEG-DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH---HAHCTVMIVKRP 157 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~---~~~~pvlvv~~~ 157 (161)
++.+.+.+.+.. +....... ..+..+.+.+...++|+||+..-. + .+..+++.+.. ...+|+.++|-.
T Consensus 48 ~i~~~l~~~g~~-~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGD-G-----Tl~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 48 EAIMLLREEGMT-IHVRVTWEKGDAARYVEEARKFGVATVIAGGGD-G-----TINEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHTTTCC-EEEEECCSTTHHHHHHHHHHHHTCSEEEEEESH-H-----HHHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred HHHHHHHHcCCc-EEEEEecCcchHHHHHHHHHhcCCCEEEEEccc-h-----HHHHHHHHHhhcccCCCCeEEEecCc
Confidence 344555555543 54444332 344455555444578877654221 1 22445566653 467899999864
No 119
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=54.32 E-value=30 Score=22.71 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=33.9
Q ss_pred EEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh--cCCCcEEEEcCC
Q 031355 96 FVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH--HAHCTVMIVKRP 157 (161)
Q Consensus 96 ~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~--~~~~pvlvv~~~ 157 (161)
+.......+..+++...++...+|+|++...-.+. .+ -.....+-. ...+||+++-..
T Consensus 33 ~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~-~G---~~~~~~lr~~~~~~~~ii~lt~~ 92 (225)
T 3klo_A 33 LALEITPFSELWLEENKPESRSIQMLVIDYSRISD-DV---LTDYSSFKHISCPDAKEVIINCP 92 (225)
T ss_dssp EEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCH-HH---HHHHHHHHHHHCTTCEEEEEEEC
T ss_pred ceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCC-CH---HHHHHHHHHhhCCCCcEEEEECC
Confidence 33333345566666666677899999998653321 11 123444443 456898888543
No 120
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=54.28 E-value=52 Score=22.85 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccEE
Q 031355 18 QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFV 97 (161)
Q Consensus 18 ~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (161)
.-..+++++-.++.. | +.+.-...+.+....+.+.+. . .+.+..+++.+++.|.. +-
T Consensus 35 ~~e~a~~~a~~l~~~--G----a~~vk~~~fkprts~~~~~g~---------~-------~egl~~l~~~~~~~Gl~-~~ 91 (262)
T 1zco_A 35 SREQIMKVAEFLAEV--G----IKVLRGGAFKPRTSPYSFQGY---------G-------EKALRWMREAADEYGLV-TV 91 (262)
T ss_dssp CHHHHHHHHHHHHHT--T----CCEEECBSSCCCSSTTSCCCC---------T-------HHHHHHHHHHHHHHTCE-EE
T ss_pred CHHHHHHHHHHHHHc--C----CCEEEEEecccCCCcccccCc---------c-------HHHHHHHHHHHHHcCCc-EE
Confidence 456677777777663 6 676666665442221111111 0 45566667777777765 54
Q ss_pred EEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 98 VEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 98 ~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+.+..-.. .+++.+. +|.+=+|++.-.... .-+++.. .++||++=..
T Consensus 92 te~~d~~~----~~~l~~~-vd~~kIga~~~~n~~------ll~~~a~-~~kPV~lk~G 138 (262)
T 1zco_A 92 TEVMDTRH----VELVAKY-SDILQIGARNSQNFE------LLKEVGK-VENPVLLKRG 138 (262)
T ss_dssp EECCCGGG----HHHHHHH-CSEEEECGGGTTCHH------HHHHHTT-SSSCEEEECC
T ss_pred EeeCCHHh----HHHHHhh-CCEEEECcccccCHH------HHHHHHh-cCCcEEEecC
Confidence 44443333 3444455 899999987543321 2233333 6788877543
No 121
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=54.23 E-value=32 Score=20.39 Aligned_cols=53 Identities=2% Similarity=-0.078 Sum_probs=29.8
Q ss_pred cCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 102 EGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 102 ~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
..+..+.+....+...+|+|++...-..+..+ -.+.+.+-....+||+++-..
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g---~~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 35 ALTGEAAVEKVSGGWYPDLILMDIELGEGMDG---VQTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp ESSHHHHHHHHHTTCCCSEEEEESSCSSSCCH---HHHHHHHHHHCCCCEEEEESS
T ss_pred ecChHHHHHHHhcCCCCCEEEEeccCCCCCCH---HHHHHHHHhCCCCCEEEEECC
Confidence 34444444444334789999998763221111 123444444467899988654
No 122
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=53.92 E-value=69 Score=24.19 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=44.6
Q ss_pred cCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCC
Q 031355 14 DDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSV 93 (161)
Q Consensus 14 d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 93 (161)
.++-.+..+...|..++.. | -++.++.. +.... ...++++.+....+.
T Consensus 109 ~G~GKTTt~~kLA~~l~~~--G----~kVllv~~-D~~R~-------------------------aa~eqL~~~~~~~gv 156 (443)
T 3dm5_A 109 QGSGKTTTVAKLARYFQKR--G----YKVGVVCS-DTWRP-------------------------GAYHQLRQLLDRYHI 156 (443)
T ss_dssp TTSSHHHHHHHHHHHHHTT--T----CCEEEEEC-CCSST-------------------------HHHHHHHHHHGGGTC
T ss_pred CCCCHHHHHHHHHHHHHHC--C----CeEEEEeC-CCcch-------------------------hHHHHHHHHHHhcCC
Confidence 3556677777888777764 4 36666543 22110 112344444444443
Q ss_pred ccEEEEEEcCChH---hHHHHHHHhcCCCEEEEecCCCCc
Q 031355 94 HDFVVEVVEGDAR---NILCEAVEKHHASILVVGSHGYGA 130 (161)
Q Consensus 94 ~~~~~~v~~g~~~---~~I~~~a~~~~~dliVlg~~~~~~ 130 (161)
. +...-...++. ...++.++..++|+|++-..++..
T Consensus 157 p-v~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 157 E-VFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp E-EECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred c-EEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 2 21111112443 334566776789999998776544
No 123
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=53.71 E-value=46 Score=22.76 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=46.2
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCC-cccccCCCCCcCcccccchHHHHHHHHHHHHHH
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS-AVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (161)
.+++|.+++...|..++..+. .. | -++..++..-... ....+.. ...+.++
T Consensus 5 MKvvvl~SGGkDSs~al~~l~----~~-G----~eV~~L~~~~~~~~~s~~~h~-------------------~~~e~a~ 56 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAI----KN-R----FSVKFLVTMVSENEESYMYHT-------------------INANLTD 56 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHH----HT-T----CEEEEEEEEECC--------C-------------------CSSSHHH
T ss_pred CEEEEEecCcHHHHHHHHHHH----Hc-C----CeEEEEEEEcCCCCCccccCC-------------------ccHHHHH
Confidence 479999999988887766543 33 4 4777665432211 0000000 0011223
Q ss_pred HHhhhcCCccEEEEEEcCC---hHhHHHHHHHhcCCCEEEEecC
Q 031355 86 EICSSKSVHDFVVEVVEGD---ARNILCEAVEKHHASILVVGSH 126 (161)
Q Consensus 86 ~~~~~~~~~~~~~~v~~g~---~~~~I~~~a~~~~~dliVlg~~ 126 (161)
..++..|.+ ....-..|. -.+.+.+..++.+++-+|.|.-
T Consensus 57 ~~A~~LGIp-l~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 57 LQARALGIP-LVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp HHHHHHTCC-EEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred HHHHHcCCC-EEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 334444543 433333332 4566677777778899998864
No 124
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=53.42 E-value=23 Score=23.72 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=28.3
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 031355 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v 47 (161)
...++|++++.++....++.+..-.+.+.. | +++.++--
T Consensus 17 l~~k~IllgvTGsiaa~k~~~lv~~L~~~~-g----~~V~vv~T 55 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALKLPLLVSKLLDIP-G----LEVAVVTT 55 (206)
T ss_dssp CSSEEEEEEECSSGGGGTHHHHHHHHC----C----EEEEEEEC
T ss_pred cCCCEEEEEEeChHHHHHHHHHHHHHhccc-C----CEEEEEEC
Confidence 345789999999999888888877775523 5 67777643
No 125
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=53.32 E-value=29 Score=19.77 Aligned_cols=47 Identities=6% Similarity=0.074 Sum_probs=28.0
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
..+..+..++..+|++++...-... .+ -...+.+-...++|++++-.
T Consensus 35 ~~~~~~~~~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~ii~~s~ 81 (122)
T 1zgz_A 35 GAGLREIMQNQSVDLILLDINLPDE-NG---LMLTRALRERSTVGIILVTG 81 (122)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSSS-CH---HHHHHHHHTTCCCEEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCC-Ch---HHHHHHHHhcCCCCEEEEEC
Confidence 3455566677789999998653321 11 12344444445688888754
No 126
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=53.06 E-value=58 Score=23.08 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=20.5
Q ss_pred eeEEEEecCChhHHHHHHHHHHHh
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHF 30 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la 30 (161)
.+|+|++.+...|...+..+....
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l 77 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCL 77 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHH
Confidence 479999999999999998887764
No 127
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=53.00 E-value=56 Score=22.91 Aligned_cols=60 Identities=5% Similarity=0.017 Sum_probs=35.6
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 72 viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (292)
T 2vc6_A 72 VIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYN 133 (292)
T ss_dssp BEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4344433344444 46779999999998887643322111111233457778899999864
No 128
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=52.88 E-value=33 Score=20.22 Aligned_cols=48 Identities=8% Similarity=0.205 Sum_probs=27.4
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~~ 157 (161)
.++.++..++..+|+|++...-... .+ -.+.+.+-.. ..+|++++-..
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDIIGE-NS---PNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCC-cH---HHHHHHHHcCcccCCCCEEEEecC
Confidence 3444556666789999998653221 11 1344555443 46888888554
No 129
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=52.73 E-value=57 Score=22.89 Aligned_cols=60 Identities=8% Similarity=-0.004 Sum_probs=35.5
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 73 viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 134 (292)
T 2ojp_A 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYN 134 (292)
T ss_dssp EEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEC
T ss_pred EEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3333333344444 45778889999998876643322111112233557778899999864
No 130
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=52.27 E-value=60 Score=23.00 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=35.8
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+++...-......--+-..-..|...++.||++..
T Consensus 84 ViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (306)
T 1o5k_A 84 VIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYN 145 (306)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred EEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4333333344444 46778999999998887643322111111233557778899999864
No 131
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=52.23 E-value=64 Score=23.33 Aligned_cols=60 Identities=20% Similarity=0.162 Sum_probs=35.5
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+++...-......--+-..-..|...++.||++..
T Consensus 103 ViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 164 (343)
T 2v9d_A 103 VLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYN 164 (343)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4333333344444 46778999999998886643322111111233457778899999864
No 132
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=51.98 E-value=36 Score=20.42 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=27.5
Q ss_pred hHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 105 ARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
-.++..+..++..+|+|++...-... .+ -...+.+-.. ..+||+++-..
T Consensus 49 ~~~~a~~~l~~~~~dlii~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 49 DGAAALELIKAHLPDVALLDYRMPGM-DG---AQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp SHHHHHHHHHHHCCSEEEEETTCSSS-CH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCC-CH---HHHHHHHHhcCCCCeEEEEEcc
Confidence 33444556666789999998753221 11 1233344333 35788887543
No 133
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=51.93 E-value=69 Score=23.64 Aligned_cols=77 Identities=8% Similarity=-0.008 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... . -+|+++|=.... + ...-+.+.+++..++++.+.+
T Consensus 179 ~~~eRIar~AFe~A~~r-r----kkVT~v~KaNvl-------------------~----~~glf~~~~~eva~eypdV~~ 230 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGR-R----KKVTSVDKANVL-------------------A----CSVLWREVVEEVAKDYPDVEL 230 (375)
T ss_dssp HHHHHHHHHHHHHHHTT-T----SEEEEEECTTTC-------------------H----HHHHHHHHHHHHHTTCTTSEE
T ss_pred HHHHHHHHHHHHHHHHc-C----CcEEEEECchhh-------------------h----hhhHHHHHHHHHHHHCCCceE
Confidence 46788999999999875 4 488888754431 1 112333445556666776544
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+... -++.+-.++..=. +.|+||..
T Consensus 231 ~~~~-VD~~am~lv~~P~--~FDViVt~ 255 (375)
T 3vmk_A 231 EHIY-IDNATMQLLRRPN--EFDVMLCS 255 (375)
T ss_dssp EEEE-HHHHHHHHHHCGG--GCSEEEEC
T ss_pred eeee-HHHHHHHHHhCcc--cCcEEEEC
Confidence 4433 3344455555444 78888774
No 134
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=51.90 E-value=59 Score=22.82 Aligned_cols=52 Identities=8% Similarity=-0.000 Sum_probs=32.1
Q ss_pred ChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 104 DARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 104 ~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+..+. +.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 84 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 137 (293)
T 1f6k_A 84 NLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYS 137 (293)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 44444 46778999999998886643322111111233456777789999864
No 135
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=51.48 E-value=33 Score=19.84 Aligned_cols=48 Identities=4% Similarity=-0.003 Sum_probs=26.7
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
.++..+..++..+|+|++...-... .+ -.+.+.+-.. ..+|++++-..
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 40 GVDALELLGGFTPDLMICDIAMPRM-NG---LKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHHHTTCCCSEEEECCC------C---HHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCC-CH---HHHHHHHHhcCCCCCEEEEEcC
Confidence 3445556677889999998653221 11 1233444333 36888887554
No 136
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=51.27 E-value=69 Score=23.39 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccEE
Q 031355 18 QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFV 97 (161)
Q Consensus 18 ~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (161)
.-..++++|-.++.. | +++.-++.+.+......+.+. ..+.+..+++.+++.|.. +-
T Consensus 118 s~e~a~~~a~~~k~a--G----a~~vr~q~fKprTs~~~f~gl----------------g~egl~~l~~~~~e~Gl~-~~ 174 (350)
T 1vr6_A 118 GREMLMETAHFLSEL--G----VKVLRGGAYKPRTSPYSFQGL----------------GEKGLEYLREAADKYGMY-VV 174 (350)
T ss_dssp CHHHHHHHHHHHHHT--T----CCEEECBSCCCCCSTTSCCCC----------------THHHHHHHHHHHHHHTCE-EE
T ss_pred CHHHHHHHHHHHHHc--C----CCeeeeeEEeCCCChHhhcCC----------------CHHHHHHHHHHHHHcCCc-EE
Confidence 455666777766664 5 677666776654432222211 135566777778877865 55
Q ss_pred EEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 98 VEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 98 ~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+.+..-...+.+.+ . +|++=+|++.-..+. .-+++. .+++||++=+.
T Consensus 175 te~~d~~~~~~l~~----~-vd~lkIgAr~~~n~~------LL~~va-~~~kPVilk~G 221 (350)
T 1vr6_A 175 TEALGEDDLPKVAE----Y-ADIIQIGARNAQNFR------LLSKAG-SYNKPVLLKRG 221 (350)
T ss_dssp EECSSGGGHHHHHH----H-CSEEEECGGGTTCHH------HHHHHH-TTCSCEEEECC
T ss_pred EEeCCHHHHHHHHH----h-CCEEEECcccccCHH------HHHHHH-ccCCcEEEcCC
Confidence 55554444444433 3 799999987544321 223333 45777776543
No 137
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=51.24 E-value=36 Score=20.10 Aligned_cols=47 Identities=2% Similarity=-0.039 Sum_probs=27.2
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.+.++...+..+|++++...-.. ..+ -...+.+-....+|++++-..
T Consensus 38 ~~al~~~~~~~~dlvllD~~l~~-~~g---~~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 38 EEAIGKIFSNKYDLIFLEIILSD-GDG---WTLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp HHHHHHHHHCCCSEEEEESEETT-EEH---HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHccCCCCCEEEEEcC
Confidence 34445666778999999865322 111 123444444347888888543
No 138
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=51.23 E-value=65 Score=23.15 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=36.1
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+++...-......--+-..-..|...++.||++..
T Consensus 106 ViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 167 (332)
T 2r8w_A 106 LMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYN 167 (332)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4444433355554 45779999999998887643322111111233457778899999864
No 139
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=51.18 E-value=68 Score=23.29 Aligned_cols=78 Identities=8% Similarity=-0.013 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... + -+|+++|=...... ...-+.+.+++...+++.+.+
T Consensus 154 ~~~eRiar~AFe~A~~r-r----kkVt~v~KaNvlk~----------------------s~glf~~~~~eva~eyp~i~~ 206 (337)
T 1w0d_A 154 FGVRRVVADAFERARRR-R----KHLTLVHKTNVLTF----------------------AGGLWLRTVDEVGECYPDVEV 206 (337)
T ss_dssp HHHHHHHHHHHHHHHHT-T----SEEEEEECTTTSHH----------------------HHHHHHHHHHHHHTTCTTSEE
T ss_pred HHHHHHHHHHHHHHHHc-C----CeEEEEECCccchh----------------------hhHHHHHHHHHHHHHCCceEE
Confidence 46889999999999975 4 38988886443211 111233444555566666544
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+... -++..-.++..=. +.|.||..
T Consensus 207 ~~~~-vD~~~mqlv~~P~--~FDVivt~ 231 (337)
T 1w0d_A 207 AYQH-VDAATIHMITDPG--RFDVIVTD 231 (337)
T ss_dssp EEEE-HHHHHHHHHHCGG--GCSEEEEC
T ss_pred EEEE-HHHHHHHHhhCcc--cccEEEEC
Confidence 4443 3344445544444 77877774
No 140
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=50.93 E-value=63 Score=22.83 Aligned_cols=60 Identities=8% Similarity=0.040 Sum_probs=35.5
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 84 ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (301)
T 1xky_A 84 VIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYN 145 (301)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4333333344444 46778999999998887643322111111233557778899999864
No 141
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=50.63 E-value=44 Score=20.93 Aligned_cols=40 Identities=20% Similarity=0.071 Sum_probs=22.4
Q ss_pred HhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCC
Q 031355 87 ICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYG 129 (161)
Q Consensus 87 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~ 129 (161)
.+...|.. ++..-......+.+..... ++|.||+|++-..
T Consensus 24 ~l~~~g~~-v~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 63 (161)
T 3hly_A 24 GLVKTGVA-VEMVDLRAVDPQELIEAVS--SARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHTTCC-EEEEETTTCCHHHHHHHHH--HCSEEEEECCBSS
T ss_pred HHHhCCCe-EEEEECCCCCHHHHHHHHH--hCCEEEEEcCCcC
Confidence 33333432 4433333344555655555 7999999987543
No 142
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=50.51 E-value=63 Score=22.78 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=31.8
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
-++.+.+++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 93 i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 141 (301)
T 3m5v_A 93 VGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYN 141 (301)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3445779999999999987643322211112234567778899999874
No 143
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=50.51 E-value=54 Score=21.99 Aligned_cols=48 Identities=6% Similarity=0.068 Sum_probs=29.2
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
..+.++.+.+..+|+|++...-.. ..+ -.+.+.+-....+||+++-..
T Consensus 70 ~~~al~~~~~~~~DlvllD~~lp~-~~G---~~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 70 AMNGLIKAREDHPDLILLDLGLPD-FDG---GDVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp HHHHHHHHHHSCCSEEEEECCSCH-HHH---HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCC-CCH---HHHHHHHHcCCCCCEEEEECC
Confidence 344455667778999999865332 111 134445545567899988654
No 144
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=50.39 E-value=63 Score=22.69 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=32.6
Q ss_pred ChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 104 DARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 104 ~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+..+. +.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (294)
T 2ehh_A 80 ATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYN 133 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44444 45778999999998886643322111111233457778899999864
No 145
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=50.34 E-value=64 Score=22.74 Aligned_cols=60 Identities=5% Similarity=0.035 Sum_probs=35.7
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+.+...-......--+-..-+.|...++.||++..
T Consensus 72 viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (297)
T 2rfg_A 72 VIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYN 133 (297)
T ss_dssp BEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3333333344444 46778999999999987643322211111233457778899999864
No 146
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=50.32 E-value=54 Score=21.87 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=26.6
Q ss_pred ceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 6 ~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
+++++|.+++...|..++.++.+. + .++..+|+..
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~-----~----~~v~av~~~~ 36 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD-----Y----DDVHCITFDY 36 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-----C----SEEEEEEEES
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc-----C----CCEEEEEEEC
Confidence 368999999999998888776553 2 2788888754
No 147
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=50.29 E-value=62 Score=22.64 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=32.7
Q ss_pred ChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 104 DARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 104 ~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+..+. +.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 80 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (289)
T 2yxg_A 80 CTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYN 133 (289)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44444 46778999999998886643322211112233557778899999864
No 148
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=50.04 E-value=63 Score=22.64 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=33.6
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 73 vi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 134 (291)
T 3a5f_A 73 VIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYN 134 (291)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEE
T ss_pred EEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4333333344444 46778999999998886643321111001122345667789999864
No 149
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=49.44 E-value=35 Score=20.59 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=27.3
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~ 156 (161)
.++..+...+..+|+|++...-.+. .+ -...+.+-.. ..+||+++-.
T Consensus 36 ~~~a~~~l~~~~~dliild~~l~~~-~g---~~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 36 ATEALAGLSADFAGIVISDIRMPGM-DG---LALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHHTCCTTCCSEEEEESCCSSS-CH---HHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCC-CH---HHHHHHHHhhCCCCCEEEEEC
Confidence 4455566667789999998653321 11 1233334332 4688888754
No 150
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=49.13 E-value=56 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=16.0
Q ss_pred hHhHHHHHHHhcCCCEEE-Eec
Q 031355 105 ARNILCEAVEKHHASILV-VGS 125 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliV-lg~ 125 (161)
..+.+.+.+++.++|+|| +|.
T Consensus 86 ~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 86 NVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp HHHHHHHHHTTSCCSEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEeCC
Confidence 356777788888999988 553
No 151
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=48.62 E-value=43 Score=20.25 Aligned_cols=48 Identities=2% Similarity=-0.029 Sum_probs=28.4
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~~ 157 (161)
.++.++..++..+|+|++...-... .+ -.+.+.+-.. ..+|++++-..
T Consensus 40 ~~~al~~l~~~~~dlii~D~~l~~~-~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 40 GREAVRFLSLTRPDLIISDVLMPEM-DG---YALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHHHTTCCCSEEEEESCCSSS-CH---HHHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCC-CH---HHHHHHHHhCCCcCCCCEEEEECC
Confidence 4445566677899999998753321 11 1233444333 46888888643
No 152
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=48.47 E-value=63 Score=22.18 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=38.0
Q ss_pred HHHhhhcCCccEEEEEE-cCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh-cCCCcEEEE
Q 031355 85 KEICSSKSVHDFVVEVV-EGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH-HAHCTVMIV 154 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~-~~~~pvlvv 154 (161)
...++..|.. +... ..-|.+.+++.+++.++|+|.+..-...... .+..+.+.+-. ..++||++-
T Consensus 144 a~~L~~~G~~---Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~--~~~~~i~~l~~~~~~~~v~vG 210 (258)
T 2i2x_B 144 TALLRANGYN---VVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMY--AFKEVNDMLLENGIKIPFACG 210 (258)
T ss_dssp HHHHHHTTCE---EEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTT--HHHHHHHHHHTTTCCCCEEEE
T ss_pred HHHHHHCCCE---EEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHH--HHHHHHHHHHhcCCCCcEEEE
Confidence 3445555643 2222 2368999999999999999999875433322 11223333322 234787775
No 153
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=48.41 E-value=25 Score=23.40 Aligned_cols=37 Identities=11% Similarity=-0.083 Sum_probs=28.7
Q ss_pred CCceeEEEEecCChhHH-HHHHHHHHHhhccCCCCCCcEEEEEE
Q 031355 4 AETQTMVVGIDDSEQST-YALQWTLDHFFANSTVNPPFKLVIVH 46 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~-~al~~a~~la~~~~~~~~~a~l~~l~ 46 (161)
...+||++++.++.... ++++..-.+.+. | ++++++-
T Consensus 5 l~~k~I~lgiTGs~aa~~k~~~ll~~L~~~--g----~eV~vv~ 42 (201)
T 3lqk_A 5 FAGKHVGFGLTGSHCTYHEVLPQMERLVEL--G----AKVTPFV 42 (201)
T ss_dssp CTTCEEEEECCSCGGGGGGTHHHHHHHHHT--T----CEEEEEC
T ss_pred cCCCEEEEEEEChHHHHHHHHHHHHHHhhC--C----CEEEEEE
Confidence 34578999999998887 888888877663 5 6877764
No 154
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=48.02 E-value=31 Score=20.38 Aligned_cols=34 Identities=3% Similarity=-0.012 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 117 HASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 117 ~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
++|+|++|..=+..+ . -.++.....++||.+++.
T Consensus 53 ~~DvvLLgPQV~y~~-----~-~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 53 VYDLIILAPQVRSYY-----R-EMKVDAERLGIQIVATRG 86 (108)
T ss_dssp GCSEEEECGGGGGGH-----H-HHHHHHTTTTCEEEECCH
T ss_pred CCCEEEEChHHHHHH-----H-HHHHHhhhcCCcEEEeCH
Confidence 699999996533222 2 234455566899998874
No 155
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=47.99 E-value=71 Score=22.58 Aligned_cols=52 Identities=6% Similarity=-0.050 Sum_probs=32.0
Q ss_pred ChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCC-CcEEEEc
Q 031355 104 DARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAH-CTVMIVK 155 (161)
Q Consensus 104 ~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~-~pvlvv~ 155 (161)
+..+. +.+.|++.++|-+++...-......--+-..-+.|...++ .||++..
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 91 STAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 44444 4677899999999888664332211111123345677778 9999864
No 156
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=47.69 E-value=71 Score=22.57 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=32.3
Q ss_pred ChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 104 DARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 104 ~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+..+. +.+.|++.++|-+++...-......--+-..-..|...++.||++..
T Consensus 96 st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 149 (304)
T 3cpr_A 96 NTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYD 149 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44444 46779999999988876643222111111233457778899999864
No 157
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=47.64 E-value=25 Score=20.28 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhcCCccEEEEEEcC-ChHhHHHHHHHhcCCCEEEEec
Q 031355 78 ARVVEEAKEICSSKSVHDFVVEVVEG-DARNILCEAVEKHHASILVVGS 125 (161)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliVlg~ 125 (161)
+++.+.+.++...++.. +-..+... .-++.-+++.+..++..+++-.
T Consensus 36 qelkdsieelvkkynat-ivvvvvddkewaekairfvkslgaqvliiiy 83 (134)
T 2l69_A 36 QELKDSIEELVKKYNAT-IVVVVVDDKEWAEKAIRFVKSLGAQVLIIIY 83 (134)
T ss_dssp HHHHHHHHHHTTCCCCE-EEEEECSSHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCe-EEEEEEccHHHHHHHHHHHHhcCCeEEEEEE
Confidence 34444555555554432 33333333 3456666677777777666654
No 158
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=47.61 E-value=40 Score=19.69 Aligned_cols=47 Identities=4% Similarity=-0.020 Sum_probs=26.6
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCC----cceeeeccchHHHHhhc-CCCcEEEEc
Q 031355 106 RNILCEAVEKHHASILVVGSHGYG----AIKRAVLGSVSDYCAHH-AHCTVMIVK 155 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~----~~~~~~~gs~~~~ll~~-~~~pvlvv~ 155 (161)
.++.++..++..+|+|++...-.. ...+ -...+.+-.. ..+||+++-
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g---~~~~~~l~~~~~~~~ii~ls 87 (140)
T 2qr3_A 36 PVSLSTVLREENPEVVLLDMNFTSGINNGNEG---LFWLHEIKRQYRDLPVVLFT 87 (140)
T ss_dssp HHHHHHHHHHSCEEEEEEETTTTC-----CCH---HHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccH---HHHHHHHHhhCcCCCEEEEE
Confidence 455556667778999999865320 1111 1233334332 468888874
No 159
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=47.55 E-value=39 Score=22.41 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=27.7
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~ 46 (161)
+||++++.++..+.++.+..-.+.+.. | ++++++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~-g----~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMP-N----VETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCT-T----CEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhcc-C----CEEEEEE
Confidence 379999999999989888888886642 4 6777764
No 160
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=47.48 E-value=21 Score=23.03 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=23.9
Q ss_pred CCCCCceeEEEEecCC---hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 1 MATAETQTMVVGIDDS---EQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 1 ~~~~~~~~ilv~~d~s---~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
|+|+...+||+..... ..+...+++....+. . | .++.++.+.+
T Consensus 1 m~m~~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~-g----~~v~~~dl~~ 46 (193)
T 1rtt_A 1 MSLSDDIKVLGISGSLRSGSYNSAALQEAIGLVP-P-G----MSIELADISG 46 (193)
T ss_dssp ------CEEEEEESCCSTTCHHHHHHHHHHTTCC-T-T----CEEEECCCTT
T ss_pred CCCCCCceEEEEECCCCCCChHHHHHHHHHHhcc-C-C----CeEEEEeHHH
Confidence 6655555787766543 356666666666655 3 4 6888887655
No 161
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=47.14 E-value=43 Score=19.87 Aligned_cols=68 Identities=4% Similarity=0.038 Sum_probs=34.5
Q ss_pred HHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhc-CCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKH-HASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~-~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
..++..+...+. +.......+..+.+ +.+.+. .+|+|++...-.+. .+ -.+.+.+-...++|++++-.
T Consensus 27 ~~l~~~L~~~~~--~~~v~~~~~~~~al-~~l~~~~~~dlvilD~~l~~~-~g---~~~~~~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 27 LYIASFIKTLPD--FKVVAQAANGQEAL-DKLAAQPNVDLILLDIEMPVM-DG---MEFLRHAKLKTRAKICMLSS 95 (145)
T ss_dssp HHHHHHHTTCTT--EEEEEEESSHHHHH-HHHHHCTTCCEEEECTTSCCC-TT---CHHHHHHHHHCCCEEC-CBS
T ss_pred HHHHHHHHhCCC--ceEEEEECCHHHHH-HHHhcCCCCCEEEEeCCCCCC-CH---HHHHHHHHhcCCCCeEEEEE
Confidence 344455554422 33322344554444 444555 89999998653221 11 13445555556678777754
No 162
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=46.94 E-value=69 Score=22.19 Aligned_cols=121 Identities=9% Similarity=0.061 Sum_probs=72.7
Q ss_pred EecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhc
Q 031355 12 GIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSK 91 (161)
Q Consensus 12 ~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 91 (161)
+-.+.-.+-..++..+++|+.. | .. ..-|..-+. ..+++ ++......++......-.+.-+..++...
T Consensus 40 ACGfHAGDp~~M~~Tv~lA~~~-g----V~-IGAHPgypD-----l~GFG-RR~m~~s~~el~~~v~YQiGAL~a~a~~~ 107 (252)
T 2x5e_A 40 ACGFHAGDPLTMRRAVELAVRH-G----VS-IGAHPAYPD-----LSGFG-RRSLACSAEEVHAMVLYQIGALDAFCRSL 107 (252)
T ss_dssp ECSSSSCCHHHHHHHHHHHHHT-T----CE-EEEECCCSC-----TTTTT-CSCCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccccCCCHHHHHHHHHHHHHc-C----Ce-eecCCCCCc-----ccCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444566788899999986 7 33 344443222 12222 22233334555666666666777888877
Q ss_pred CCccEEEEEEcC----------ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEE
Q 031355 92 SVHDFVVEVVEG----------DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVM 152 (161)
Q Consensus 92 ~~~~~~~~v~~g----------~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvl 152 (161)
|.. +.+.--+| ..++.|++.++..+.+|+++|..-. -||...+......+|++
T Consensus 108 G~~-l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~~~-------~gs~~~~~A~~~Gl~~~ 170 (252)
T 2x5e_A 108 GTQ-VAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLALA-------DNGRELELADEADVPLL 170 (252)
T ss_dssp TCC-CCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEECCS-------CCHHHHHHHHHHTCCEE
T ss_pred CCE-eEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeCCC-------CCCHHHHHHHHcCCcEE
Confidence 754 66555554 3578899999999999999995411 13444555555566654
No 163
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=46.91 E-value=31 Score=22.44 Aligned_cols=9 Identities=11% Similarity=0.061 Sum_probs=4.2
Q ss_pred EEEEEecCC
Q 031355 42 LVIVHARPS 50 (161)
Q Consensus 42 l~~l~v~~~ 50 (161)
+.++++.+.
T Consensus 6 mri~~iSD~ 14 (228)
T 1uf3_A 6 RYILATSNP 14 (228)
T ss_dssp CEEEEEECC
T ss_pred EEEEEEeec
Confidence 344555443
No 164
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=46.91 E-value=74 Score=22.52 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=26.9
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
++++|++++...|..++..+.+.. | .++.++|+..
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~----g----~~v~av~vd~ 55 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAI----G----DRLHAVFVNT 55 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHH----G----GGEEEEEEEC
T ss_pred CCEEEEEeChHHHHHHHHHHHHhh----C----CCEEEEEEcC
Confidence 689999999998888877766542 3 3788888854
No 165
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=46.81 E-value=30 Score=23.56 Aligned_cols=47 Identities=4% Similarity=-0.036 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 108 ILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 108 ~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
+.++.+.+.+.|.|.+|....-.... .-.+.+.+-. .+.|+++.|..
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~--~~~~v~~ik~-~~~Pvvlfp~~ 68 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDN--VLRMMSKVRR-FLVPCVLEVSA 68 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHH--HHHHHHHHTT-SSSCEEEECSC
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHH--HHHHHHHhhc-cCCCEEEeCCC
Confidence 35555667899999999753222211 1223333333 78999998865
No 166
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=46.43 E-value=55 Score=20.90 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=26.8
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
.+.++.+.+..+|+|++...-.+. .+ -.+...+-...+.||+++-
T Consensus 48 ~~al~~~~~~~~dlvi~D~~~p~~-~g---~~~~~~l~~~~~~pii~lt 92 (205)
T 1s8n_A 48 QEAVELAELHKPDLVIMDVKMPRR-DG---IDAASEIASKRIAPIVVLT 92 (205)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSSS-CH---HHHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHhhcCCCEEEEeCCCCCC-Ch---HHHHHHHHhcCCCCEEEEe
Confidence 334455566789999998653321 11 1344555555567888874
No 167
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=46.39 E-value=52 Score=20.59 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=17.0
Q ss_pred hHhHHHHHHHhcCCCEEEEecCCCC
Q 031355 105 ARNILCEAVEKHHASILVVGSHGYG 129 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliVlg~~~~~ 129 (161)
..+.+..... ++|.||+|+.-..
T Consensus 46 ~~~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 46 DLQELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp CHHHHHHHHH--TEEEEEEECCBTT
T ss_pred CHHHHHHHHH--hCCEEEEEcCcCC
Confidence 4566666666 7999999987554
No 168
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=46.35 E-value=91 Score=23.41 Aligned_cols=83 Identities=14% Similarity=0.078 Sum_probs=43.6
Q ss_pred CChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCc
Q 031355 15 DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVH 94 (161)
Q Consensus 15 ~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 94 (161)
++-.+..+...|..++.. | .++.++..-.. . . ...+++..+....+..
T Consensus 107 GsGKTTt~~kLA~~l~~~--G----~kVllv~~D~~-r------------------~-------~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 107 GSGKTTTAGKLAYFYKKR--G----YKVGLVAADVY-R------------------P-------AAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp TSCHHHHHHHHHHHHHHT--T----CCEEEEEECCS-C------------------H-------HHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHHc--C----CeEEEEecCcc-c------------------h-------hHHHHHHHHHHhcCCc
Confidence 555677777888777764 4 47776655321 1 0 1123333444443432
Q ss_pred cEEEEEEcCChH---hHHHHHHHhcCCCEEEEecCCCCc
Q 031355 95 DFVVEVVEGDAR---NILCEAVEKHHASILVVGSHGYGA 130 (161)
Q Consensus 95 ~~~~~v~~g~~~---~~I~~~a~~~~~dliVlg~~~~~~ 130 (161)
+.......++. ...+..+...++|+|++...++..
T Consensus 155 -~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 155 -VYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp -EECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred -eeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 22111112343 233455556689999998887654
No 169
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=46.21 E-value=66 Score=21.74 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=36.1
Q ss_pred HHHhhhcCCccEEEEEEcCChHhHHHHH---HHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 85 KEICSSKSVHDFVVEVVEGDARNILCEA---VEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~---a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
++.+.+++.. .+..+..+...+.+... ..+.++|.||-. |.++..|=.+.++||+-++..
T Consensus 29 ~~i~~e~~~~-~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------------Ggta~~Lr~~~~iPVV~I~vs 91 (225)
T 2pju_A 29 RDISLEFDHL-ANITPIQLGFEKAVTYIRKKLANERCDAIIAA------------GSNGAYLKSRLSVPVILIKPS 91 (225)
T ss_dssp HHHHTTTTTT-CEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred HHHHHhhCCC-ceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------------ChHHHHHHhhCCCCEEEecCC
Confidence 3444443332 55666666654444332 333458866543 677787777889999988754
No 170
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=45.94 E-value=26 Score=25.30 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=37.4
Q ss_pred HHHHHHhhhcCCccEEEEE--EcC--ChHhHHHHHHHhcCCCEEE-EecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 82 EEAKEICSSKSVHDFVVEV--VEG--DARNILCEAVEKHHASILV-VGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v--~~g--~~~~~I~~~a~~~~~dliV-lg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+++.+.+++.+.. +.... ..+ +..+.+ +.+++.++|.|| +|... ..+++.-+.....+|++.||-
T Consensus 51 ~~v~~~L~~~g~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGs--------v~D~aK~vA~~~~~p~i~IPT 120 (354)
T 3ce9_A 51 ETIEKSIKSSNIE-IEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGK--------AIDAVKYMAFLRKLPFISVPT 120 (354)
T ss_dssp HHHHHHHHTTTCE-EEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHH--------HHHHHHHHHHHHTCCEEEEES
T ss_pred HHHHHHHHHcCCe-EEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChH--------HHHHHHHHHhhcCCCEEEecC
Confidence 4555555554532 33222 222 235566 777788899888 55321 134555555556889999985
Q ss_pred C
Q 031355 157 P 157 (161)
Q Consensus 157 ~ 157 (161)
.
T Consensus 121 T 121 (354)
T 3ce9_A 121 S 121 (354)
T ss_dssp C
T ss_pred c
Confidence 4
No 171
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=45.83 E-value=31 Score=23.66 Aligned_cols=47 Identities=4% Similarity=-0.053 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 108 ILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 108 ~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
+.++.+.+.++|.|.+|....-..... -.+.+.+-. .+.|+++.|..
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~~--~~~v~~ik~-~~~Piil~p~~ 73 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDNV--IHLMSKIRR-YPLPLVLEISN 73 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHHH--HHHHHHHTT-SCSCEEEECCC
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHHH--HHHHHHhcC-cCCCEEEecCC
Confidence 455556788999999997532222211 233343433 78999998864
No 172
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=45.78 E-value=23 Score=23.63 Aligned_cols=76 Identities=25% Similarity=0.293 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecC-CCCcceeeeccchHHHHhhcCCCcEEE
Q 031355 75 KIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH-GYGAIKRAVLGSVSDYCAHHAHCTVMI 153 (161)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~-~~~~~~~~~~gs~~~~ll~~~~~pvlv 153 (161)
++.++.++.+.+.+++.+...+-.-...|.-+....+..+ + ++|++..+ +......+-+..-..+-|.....+|+.
T Consensus 34 eNT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~--~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 110 (206)
T 1t57_A 34 ENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVE--G-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYA 110 (206)
T ss_dssp GGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCC--S-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEEC
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHcc--C-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 3445556666666666665434333334656655555442 3 88888865 333333344556666666666777664
No 173
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=45.52 E-value=65 Score=21.47 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=57.3
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHH
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKE 86 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (161)
+||.|-++++.....++-.+..--. . + .++.++...++.. . ..+
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~~~-~-~----~~I~~Vvs~~~~~-~-----------------------------~~~ 44 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREPN-S-S----AQIDIVISNKAAV-A-----------------------------GLD 44 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHSTT-C-S----CEEEEEEESSTTC-H-----------------------------HHH
T ss_pred CeEEEEEECCchHHHHHHHHHhcCC-C-C----cEEEEEEeCCCCh-H-----------------------------HHH
Confidence 3788888888877777765543322 1 2 4666664433211 0 023
Q ss_pred HhhhcCCccEEEEEEc--CCh---HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 87 ICSSKSVHDFVVEVVE--GDA---RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 87 ~~~~~~~~~~~~~v~~--g~~---~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.+.+.|.. +...-.. .+. .+++.+..++.++|++|+...++- +...++...+..++-+++.
T Consensus 45 ~A~~~gIp-~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~i---------l~~~~l~~~~~~~iNiHpS 110 (209)
T 1meo_A 45 KAERAGIP-TRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRI---------LSGPFVQKWNGKMLNIHPS 110 (209)
T ss_dssp HHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCCSC---------CCHHHHHHTTTSEEEEESS
T ss_pred HHHHcCCC-EEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchhhh---------CCHHHHhhhcCCEEEEccC
Confidence 44555654 3211111 111 256888889999999999865421 2234555555555555443
No 174
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=44.92 E-value=32 Score=25.18 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=16.4
Q ss_pred hHhHHHHHHHhcCCCEEE-Eec
Q 031355 105 ARNILCEAVEKHHASILV-VGS 125 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliV-lg~ 125 (161)
..+.+.+.+++.++|+|| +|.
T Consensus 76 ~v~~~~~~~~~~~~d~IIavGG 97 (386)
T 1rrm_A 76 VVKEGLGVFQNSGADYLIAIGG 97 (386)
T ss_dssp HHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHHhcCcCEEEEeCC
Confidence 357778888899999888 553
No 175
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=44.24 E-value=42 Score=18.90 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=27.3
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.+..+...+..+|++++...-.. ..+ -...+.+-...++|++++-..
T Consensus 35 ~~a~~~~~~~~~dlvl~D~~l~~-~~g---~~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 35 REALEQFEAEQPDIIILDLMLPE-IDG---LEVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSS-SCH---HHHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHHhCCCCEEEEeccCCC-CCH---HHHHHHHHhCCCCCEEEEecC
Confidence 33445556678999999865332 111 123444444567898888543
No 176
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=44.23 E-value=84 Score=22.37 Aligned_cols=60 Identities=15% Similarity=0.064 Sum_probs=36.5
Q ss_pred EEEEEEcCChHh--HHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARN--ILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~--~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+ ++.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 96 ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 157 (315)
T 3na8_A 96 TIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYN 157 (315)
T ss_dssp BEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 433333334444 445779999999999987643322211112344567778899999874
No 177
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=44.08 E-value=25 Score=23.17 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=27.2
Q ss_pred HHHhcC--CCEEEEecCCC--C-cceeeeccchHHHHh-hcCCCcEEEEcC
Q 031355 112 AVEKHH--ASILVVGSHGY--G-AIKRAVLGSVSDYCA-HHAHCTVMIVKR 156 (161)
Q Consensus 112 ~a~~~~--~dliVlg~~~~--~-~~~~~~~gs~~~~ll-~~~~~pvlvv~~ 156 (161)
..++.+ +|.+++|+.+- + ..- --.|+..-.++ ++.++|++|+-+
T Consensus 44 ~m~~~~~~Vd~VivGAd~v~~nG~v~-nkiGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 44 RIRTSPIPIKAAFVGADRIVRNGDTA-NKIGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp HHHHCSSCEEEEEECCSEECTTSCEE-EETTHHHHHHHHHHHTCEEEEECC
T ss_pred HHHhCCCCCCEEEECccEEecCCCEE-ecccHHHHHHHHHHcCCCEEEecc
Confidence 344456 99999999852 2 222 22455544444 456899999844
No 178
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=43.94 E-value=94 Score=22.86 Aligned_cols=77 Identities=8% Similarity=-0.053 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... . -+|+++|=..... ...-+.+.+++..++++.+.+
T Consensus 174 ~~~eRIar~AFe~A~~r-r----kkVt~v~KaNvlk-----------------------t~glf~~~~~eva~eypdV~~ 225 (366)
T 1vlc_A 174 KTVERIARTAFEIAKNR-R----KKVTSVDKANVLY-----------------------SSMLWRKVVNEVAREYPDVEL 225 (366)
T ss_dssp HHHHHHHHHHHHHHHTT-T----SEEEEEECTTTCH-----------------------HHHHHHHHHHHHHTTCTTSEE
T ss_pred HHHHHHHHHHHHHHHHc-C----CeEEEEECCcccc-----------------------cchHHHHHHHHHHHHCCCceE
Confidence 46889999999999975 4 3888887654421 111233445555566766544
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+.... .+..-.++..=. +.|+||..
T Consensus 226 ~~~~V-D~~~mqlv~~P~--~FDVivt~ 250 (366)
T 1vlc_A 226 THIYV-DNAAMQLILKPS--QFDVILTT 250 (366)
T ss_dssp EEEEH-HHHHHHHHHCGG--GCSEEEEC
T ss_pred EeeeH-HHHHHHHhhCcc--cceEEEEc
Confidence 44432 344445555444 77887764
No 179
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=43.76 E-value=94 Score=22.79 Aligned_cols=77 Identities=8% Similarity=-0.003 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... . -+|+++|=..... ...-+.+.+++...+++.+.+
T Consensus 163 ~~~eRIar~AFe~A~~r-r----kkVt~v~KaNvlk-----------------------~~~lf~~~~~eva~eypdI~~ 214 (359)
T 2y3z_A 163 PEVERVARVAFEAARKR-R----KHVVSVDKANVLE-----------------------VGEFWRKTVEEVGRGYPDVAL 214 (359)
T ss_dssp HHHHHHHHHHHHHHHTT-T----SEEEEEECTTTCH-----------------------HHHHHHHHHHHHHTTCTTSEE
T ss_pred HHHHHHHHHHHHHHHHc-C----CeEEEEECCcccc-----------------------ccHHHHHHHHHHHHHCCcEEE
Confidence 46789999999999975 4 4888887644421 111233445555566766545
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+... -++..-.++..=. +.|.||..
T Consensus 215 ~~~~-VD~~~mqlv~~P~--~FDVivt~ 239 (359)
T 2y3z_A 215 EHQY-VDAMAMHLVRSPA--RFDVVVTG 239 (359)
T ss_dssp EEEE-HHHHHHHHHHCGG--GCSEEEEC
T ss_pred EeeE-HHHHHHHHhhCcc--cccEEEEc
Confidence 4433 3344445554444 77888774
No 180
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=43.70 E-value=37 Score=19.99 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=28.1
Q ss_pred HhHHHHHHHh-cCCCEEEEecCCCCcceeeeccchHHHHhh---cCCCcEEEEcCC
Q 031355 106 RNILCEAVEK-HHASILVVGSHGYGAIKRAVLGSVSDYCAH---HAHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~-~~~dliVlg~~~~~~~~~~~~gs~~~~ll~---~~~~pvlvv~~~ 157 (161)
.++.++..++ ..+|+|++...-.+...++ .+.+.+-. ...+||+++-..
T Consensus 38 ~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 38 LKKFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp HHHHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEEEeCC
Confidence 3445556666 8999999986533121111 23333433 357888887543
No 181
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=43.63 E-value=53 Score=19.95 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=27.3
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHh---hcCCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCA---HHAHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll---~~~~~pvlvv~~~ 157 (161)
.+-++..++..+|+|++...=+. ..++ .+.+++= ....+||+++-..
T Consensus 47 ~~al~~~~~~~~DlillD~~MP~-mdG~---el~~~ir~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 47 LTALPMLKKGDFDFVVTDWNMPG-MQGI---DLLKNIRADEELKHLPVLMITAE 96 (134)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTCCEEEEESS
T ss_pred HHHHHHHHhCCCCEEEEcCCCCC-CCHH---HHHHHHHhCCCCCCCeEEEEECC
Confidence 33445666779999999876332 1111 2334342 2246899988654
No 182
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=43.44 E-value=52 Score=22.20 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=23.6
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
..+.+..++.++|.|.+-............-....++...+.+||++.
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ 85 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 85 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEe
Confidence 345555556667766654332221111111234455666666777664
No 183
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=43.44 E-value=85 Score=22.20 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=36.4
Q ss_pred EEEEEEcCChHh--HHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARN--ILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~--~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+ ++.+.+++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 87 viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 148 (304)
T 3l21_A 87 VIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYD 148 (304)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 433333334444 445779999999999987643322211112234567888899999874
No 184
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=43.30 E-value=47 Score=19.20 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=28.3
Q ss_pred hHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcCC
Q 031355 105 ARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKRP 157 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~~ 157 (161)
-.++..+..++..+|+|++...-... .+ -...+.+-.. ..+||+++-..
T Consensus 35 ~~~~a~~~l~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 35 DGASGLQQALAHPPDVLISDVNMDGM-DG---YALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp SHHHHHHHHHHSCCSEEEECSSCSSS-CH---HHHHHHHHHSTTTTTCCEEEEESC
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCCC-CH---HHHHHHHHhCCccCCCCEEEEeCC
Confidence 33444556677889999998653221 11 1233444432 36888888654
No 185
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=43.23 E-value=49 Score=19.36 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=28.0
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh---cCCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH---HAHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~---~~~~pvlvv~~~ 157 (161)
.++..+..++..+|+|++...-... .+ -.+.+.+-. ...+||+++-..
T Consensus 43 ~~~a~~~l~~~~~dlii~d~~l~~~-~g---~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 43 PFDAGDLLHTVKPDVVMLDLMMVGM-DG---FSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp HHHHHHHHHHTCCSEEEEETTCTTS-CH---HHHHHHHHTSTTTTTSEEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEecccCCC-cH---HHHHHHHHhCccccCCcEEEEeCC
Confidence 3445556666789999998754321 11 123444443 346888887543
No 186
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=43.15 E-value=72 Score=21.30 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=28.0
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
+++.+..++.++|++|+...++- +...++...+..++=+++.
T Consensus 70 ~~~~~~l~~~~~Dliv~a~y~~i---------l~~~~l~~~~~~~iNiHpS 111 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAGFMRI---------LSHNFLKYFPNKVINIHPS 111 (216)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---------CCHHHHTTSTTCEEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeCchhh---------CCHHHHhhccCCeEEEcCC
Confidence 57888899999999999765421 2244555555566655543
No 187
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=43.08 E-value=45 Score=18.94 Aligned_cols=48 Identities=6% Similarity=0.081 Sum_probs=27.9
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.....+...+..+|++++...-.+. .+ -...+.+-...++|++++-..
T Consensus 36 ~~~a~~~~~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 36 GAEMHQILSEYDINLVIMDINLPGK-NG---LLLARELREQANVALMFLTGR 83 (123)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSSS-CH---HHHHHHHHHHCCCEEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCCC-CH---HHHHHHHHhCCCCcEEEEECC
Confidence 3444556667789999998653321 11 123444444457888887543
No 188
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=43.01 E-value=40 Score=22.55 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=25.6
Q ss_pred HHHhhhcCCccEEEEEEc-CChHhHHHHHHHhcCCCEEEE
Q 031355 85 KEICSSKSVHDFVVEVVE-GDARNILCEAVEKHHASILVV 123 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliVl 123 (161)
...++..|. ++.-.. .-|.+.|++.++++++|+|.+
T Consensus 113 ~~~l~~~G~---~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 113 TTMLGANGF---QIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp HHHHHHTSC---EEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHCCC---eEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 344555564 322222 359999999999999999999
No 189
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=42.96 E-value=49 Score=19.34 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=26.6
Q ss_pred HhHHHHHHHh-cCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEc
Q 031355 106 RNILCEAVEK-HHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVK 155 (161)
Q Consensus 106 ~~~I~~~a~~-~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~ 155 (161)
.++.++..++ ..+|++++...-.. ..+ -...+.+-.. ..+|++++-
T Consensus 48 ~~~al~~l~~~~~~dlvilD~~l~~-~~g---~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 48 GSAFFQHRSQLSTCDLLIVSDQLVD-LSI---FSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHHTGGGGGSCSEEEEETTCTT-SCH---HHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCC-CCH---HHHHHHHHhhCCCCCEEEEE
Confidence 3444556666 78999999865332 111 1233444332 368888886
No 190
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=42.76 E-value=46 Score=18.99 Aligned_cols=47 Identities=4% Similarity=0.027 Sum_probs=26.3
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~ 156 (161)
.++..+...+..+|++++...-.+. .+ -...+.+-.. ..+|++++-.
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 35 YDSAVNQLNEPWPDLILLAWMLPGG-SG---IQFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp HHHHHTTCSSSCCSEEEEESEETTE-EH---HHHHHHHHTSTTTTTSCEEEEEE
T ss_pred HHHHHHHHhccCCCEEEEecCCCCC-CH---HHHHHHHHhCcccCCCCEEEEeC
Confidence 3444456666789999998653221 11 1233444333 4688888743
No 191
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=42.76 E-value=98 Score=22.72 Aligned_cols=77 Identities=6% Similarity=-0.029 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... + -+|+++|=..... ...-+.+.+++..++++.+.+
T Consensus 170 ~~~eRiar~AFe~A~~r-r----kkVt~v~KaNvlk-----------------------~~~lf~~~~~eva~eypdI~~ 221 (363)
T 1cnz_A 170 FEIERIARIAFESARKR-R----RKVTSIDKANVLQ-----------------------SSILWREIVNDVAKTYPDVEL 221 (363)
T ss_dssp HHHHHHHHHHHHHHHTT-T----SEEEEEECTTTCH-----------------------HHHHHHHHHHHHHTTCTTSEE
T ss_pred HHHHHHHHHHHHHHHhc-C----CeEEEEECCcccc-----------------------cchhHHHHHHHHHHHCCCceE
Confidence 46889999999999975 4 3888888654421 112333444555566766645
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+... -.+..-.++..=. .+|+||..
T Consensus 222 ~~~~-vD~~~m~lv~~P~--~FDVivt~ 246 (363)
T 1cnz_A 222 AHMY-IDNATMQLIKDPS--QFDVLLCS 246 (363)
T ss_dssp EEEE-HHHHHHHHHHCGG--GCSEEEEC
T ss_pred eeee-HHHHHHHHhhCcc--cceEEEEC
Confidence 4433 3344445554444 77877764
No 192
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=42.65 E-value=70 Score=21.04 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 109 LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 109 I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.++..++..+|++++...-... .+ -.....+-....+||+++-..
T Consensus 41 al~~l~~~~~dlvilD~~l~~~-~g---~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 41 ALTAVRELRPDLVLLDLMLPGM-NG---IDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp HHHHHHHHCCSEEEEESSCSSS-CH---HHHHHHHHTTCCCCEEEEEET
T ss_pred HHHHHHhCCCCEEEEeCCCCCC-CH---HHHHHHHHhCCCCcEEEEeCC
Confidence 3455566789999998653321 11 123444544457899988543
No 193
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=42.42 E-value=75 Score=21.32 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=49.5
Q ss_pred ceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHH
Q 031355 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (161)
Q Consensus 6 ~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (161)
..||.|-+.++.....++-.+..-- . + +++.++....+. .. . .
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~~~--~-~----~eI~~Vis~~~~-a~-----------------~------------~ 47 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQKG--L-A----IEIRAVISNRAD-AY-----------------G------------L 47 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTT--C-S----EEEEEEEESCTT-CH-----------------H------------H
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHcC--C-C----CEEEEEEeCCcc-hH-----------------H------------H
Confidence 4579999998887777776665433 2 3 566665442221 10 0 2
Q ss_pred HHhhhcCCccEEEEEEc--CC---hHhHHHHHHHhcCCCEEEEecCC
Q 031355 86 EICSSKSVHDFVVEVVE--GD---ARNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 86 ~~~~~~~~~~~~~~v~~--g~---~~~~I~~~a~~~~~dliVlg~~~ 127 (161)
+.+++.|.. +...-.. .+ -.+++.+..++.++|++|+...+
T Consensus 48 ~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 48 KRAQQADIP-THIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp HHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHcCCC-EEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 344555654 3221111 11 14678899999999999997654
No 194
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=42.22 E-value=47 Score=22.68 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=27.4
Q ss_pred hHHHHHHH--hcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 107 NILCEAVE--KHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 107 ~~I~~~a~--~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+.|.+..+ ..++|++|+-..+.- ...+..+.....++....+||++|-.
T Consensus 119 ~~I~~~~~~l~~~~D~vlIEGagGl-~~pl~~~~~~adlA~~l~~pVILV~~ 169 (242)
T 3qxc_A 119 DNLTQRLHNFTKTYDLVIVEGAGGL-CVPITLEENMLDFALKLKAKMLLISH 169 (242)
T ss_dssp HHHHHHHHHGGGTCSEEEEECCSCT-TCBSSSSCBHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCc-cccccccchHHHHHHHcCCCEEEEEc
Confidence 44444433 348899998654321 11111123345678888999888744
No 195
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=41.75 E-value=1e+02 Score=22.59 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... . -+|+++|=..... ...-+.+.+++...+++.+.+
T Consensus 165 ~~~eRiar~AFe~A~~r-r----kkVt~v~KaNvlk-----------------------~~~lf~~~~~eva~eypdI~~ 216 (358)
T 1a05_A 165 DEIRRIAHVAFRAAQGR-R----KQLCSVDKANVLE-----------------------TTRLWREVVTEVARDYPDVRL 216 (358)
T ss_dssp HHHHHHHHHHHHHHHTT-T----SEEEEEECTTTCH-----------------------HHHHHHHHHHHHGGGCTTSEE
T ss_pred HHHHHHHHHHHHHHHhc-C----CeEEEEECCcccc-----------------------cchhHHHHHHHHHHHCCCceE
Confidence 46789999999999875 4 3888887644421 112344455566667776645
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+.. .-.+..-.++..=. ++|.||..
T Consensus 217 ~~~-~vD~~~mqlv~~P~--~FDVivt~ 241 (358)
T 1a05_A 217 SHM-YVDNAAMQLIRAPA--QFDVLLTG 241 (358)
T ss_dssp EEE-EHHHHHHHHHHCGG--GCSEEEEC
T ss_pred Eee-eHHHHHHHHHhCCC--cccEEEec
Confidence 443 33444555555444 77888774
No 196
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=41.60 E-value=47 Score=24.30 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=16.3
Q ss_pred hHhHHHHHHHhcCCCEEE-Eec
Q 031355 105 ARNILCEAVEKHHASILV-VGS 125 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliV-lg~ 125 (161)
..+.+.+.+++.++|+|| +|.
T Consensus 80 ~v~~~~~~~~~~~~d~IIavGG 101 (387)
T 3bfj_A 80 NVRDGLAVFRREQCDIIVTVGG 101 (387)
T ss_dssp HHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEeCC
Confidence 357778888999999888 553
No 197
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=41.45 E-value=51 Score=24.85 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCCccEEEEEEcCCh----HhHHHHHHHhcCCCEEE-EecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 80 VVEEAKEICSSKSVHDFVVEVVEGDA----RNILCEAVEKHHASILV-VGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~v~~g~~----~~~I~~~a~~~~~dliV-lg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
..+++.+.+.+.+.. +.+.+..|++ .+.+.+.+++ ++|+|| +|... ..+++.-+.....+|++.|
T Consensus 106 ~~~~v~~~L~~~gi~-~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGS--------viD~AK~iA~~~giP~I~I 175 (450)
T 1ta9_A 106 CANKIVDSLSQNGMT-VTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGK--------TMDSAKYIAHSMNLPSIIC 175 (450)
T ss_dssp THHHHHHHHHHTTCE-EEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHH--------HHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHCCCe-EEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcH--------HHHHHHHHHHhcCCCEEEE
Confidence 456666666655543 4345566643 3444555666 889888 55221 1345555555568999999
Q ss_pred cCC
Q 031355 155 KRP 157 (161)
Q Consensus 155 ~~~ 157 (161)
|-.
T Consensus 176 PTT 178 (450)
T 1ta9_A 176 PTT 178 (450)
T ss_dssp ESS
T ss_pred eCC
Confidence 854
No 198
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=41.36 E-value=53 Score=19.23 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=27.4
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh---cCCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH---HAHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~---~~~~pvlvv~~ 156 (161)
.++.++..++..+|+|++...-.. ..+ -.+.+.+-. ...+|++++-.
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDLNLPD-QDG---VSLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSS-SCH---HHHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCH---HHHHHHHHhCcccCCCCEEEEec
Confidence 344556667789999999865322 111 123333432 34688888754
No 199
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=41.35 E-value=1.1e+02 Score=22.75 Aligned_cols=36 Identities=11% Similarity=0.247 Sum_probs=27.5
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
++++|++++...|..++.++... || .++.++|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~----~g----~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET----YR----AEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----HT----CEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHh----hC----CcEEEEEEeCC
Confidence 47999999999998888887543 24 48888888543
No 200
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=41.34 E-value=1.1e+02 Score=22.75 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=27.8
Q ss_pred ceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 6 ~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
.++++|++++...|..++..+.. . | .++.++|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~-G----~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----R-G----VSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----B-T----EEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----c-C----CcEEEEEEeC
Confidence 57899999999888888776653 3 5 6999999864
No 201
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=41.31 E-value=41 Score=20.91 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 108 ILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 108 ~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
...+..++-+.+.-++|+...+.......-.+-+...+.++.||+++
T Consensus 74 ~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~ 120 (141)
T 4e0q_A 74 KKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQ 120 (141)
T ss_dssp HHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEE
Confidence 33444444455666666654322111111123334445556677666
No 202
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=41.23 E-value=1.2e+02 Score=23.20 Aligned_cols=34 Identities=6% Similarity=0.046 Sum_probs=26.8
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
++++|++++...|..++..+.+. | .++.++|+..
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~-----g----~~v~av~vd~ 243 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA-----G----VDHLAVFVDH 243 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH-----T----CEEEEEEEEC
T ss_pred ccEEEEecCCcchHHHHHHHHHc-----C----CeEEEEEEeC
Confidence 68999999999888887776554 3 3899999854
No 203
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=40.97 E-value=48 Score=22.09 Aligned_cols=48 Identities=13% Similarity=-0.007 Sum_probs=29.7
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
.+.++.+.+.++|.|++......+...-+.-.....+....++||++.
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~ 204 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIAS 204 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEe
Confidence 345667777899999887654433222122234566666678898875
No 204
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=40.83 E-value=36 Score=22.79 Aligned_cols=38 Identities=8% Similarity=-0.024 Sum_probs=27.9
Q ss_pred CCceeEEEEecCChhHHH-HHHHHHHHhhccCCCCCCcEEEEEEe
Q 031355 4 AETQTMVVGIDDSEQSTY-ALQWTLDHFFANSTVNPPFKLVIVHA 47 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~-al~~a~~la~~~~~~~~~a~l~~l~v 47 (161)
...++|++++.++....+ +++..-.+.+. | +++.++-.
T Consensus 3 l~~k~IllgiTGsiaayk~~~~ll~~L~~~--g----~eV~vv~T 41 (207)
T 3mcu_A 3 LKGKRIGFGFTGSHCTYEEVMPHLEKLIAE--G----AEVRPVVS 41 (207)
T ss_dssp CTTCEEEEEECSCGGGGTTSHHHHHHHHHT--T----CEEEEEEC
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHHHHhC--C----CEEEEEEe
Confidence 445899999999987665 77777777663 5 68877643
No 205
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=40.79 E-value=1.1e+02 Score=22.74 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... . -+|+++|=.... . ...-+.+.+++..++++.+.+
T Consensus 186 ~~~eRIar~AFe~A~~r-r----kkVT~v~KaNVl-~----------------------t~glfr~~~~eva~eYPdV~~ 237 (390)
T 3u1h_A 186 EEIERIIRKAFELALTR-K----KKVTSVDKANVL-E----------------------SSRLWREVAEEVAKEYPDVEL 237 (390)
T ss_dssp HHHHHHHHHHHHHHHTT-T----SEEEEEECTTTC-H----------------------HHHHHHHHHHHHHTTCTTSEE
T ss_pred HHHhHHHHHHHHHHHHc-C----CceEEEECCccc-c----------------------cchHHHHHHHHHHhHCCCCeE
Confidence 46788999999999875 4 489888754432 1 111233344455566666544
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+.... ++.+-.++..=. +.|.||..
T Consensus 238 ~~~~V-D~~amqLV~~P~--~FDViVt~ 262 (390)
T 3u1h_A 238 EHMLV-DNAAMQLIRNPR--QFDVIVTE 262 (390)
T ss_dssp EEEEH-HHHHHHHHHCGG--GCSEEEEC
T ss_pred EeeeH-HHHHHHHHhCcc--cCcEEEec
Confidence 44332 344445554433 78877764
No 206
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=40.64 E-value=58 Score=22.40 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecC
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~ 126 (161)
+.++++...+.+.. +...+..|--.+.+. .+.+.++|.+|+|+.
T Consensus 182 I~~lr~~~~~~~~~-~~I~VDGGI~~~ti~-~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 182 AKEISKWISSTDRD-ILLEIDGGVNPYNIA-EIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHTSC-CEEEEESSCCTTTHH-HHHTTTCCEEEESHH
T ss_pred HHHHHHHHHhcCCC-eeEEEECCcCHHHHH-HHHHcCCCEEEEehH
Confidence 34455555544432 556666663344444 456679999999963
No 207
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=40.57 E-value=67 Score=23.73 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=16.2
Q ss_pred hHhHHHHHHHhcCCCEEE-Eec
Q 031355 105 ARNILCEAVEKHHASILV-VGS 125 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliV-lg~ 125 (161)
..+.+.+.+++.++|+|| +|.
T Consensus 89 ~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 89 KVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp HHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEeCC
Confidence 356777888999999988 553
No 208
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=40.34 E-value=74 Score=20.65 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=27.3
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
++.++..++..+|++++...-... .+ -...+.+-....+||+++-.
T Consensus 38 ~~al~~~~~~~~dlvllD~~l~~~-~g---~~~~~~l~~~~~~~ii~lt~ 83 (230)
T 2oqr_A 38 PAALAEFDRAGADIVLLDLMLPGM-SG---TDVCKQLRARSSVPVIMVTA 83 (230)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSSS-CH---HHHHHHHHHHCSCSEEEEEC
T ss_pred HHHHHHHhccCCCEEEEECCCCCC-CH---HHHHHHHHcCCCCCEEEEeC
Confidence 334455566789999998653321 11 12344454445789988854
No 209
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=40.02 E-value=59 Score=19.40 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=29.0
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh-cCCCcEEEEcCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH-HAHCTVMIVKRP 157 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~-~~~~pvlvv~~~ 157 (161)
.-.++.++..++..+|+|++...-... .+ -.+.+.+-. ...+||+++-..
T Consensus 53 ~~~~~al~~l~~~~~dlii~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 53 KNGQEAIQLLEKESVDIAILDVEMPVK-TG---LEVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp SSHHHHHHHHTTSCCSEEEECSSCSSS-CH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred CCHHHHHHHhhccCCCEEEEeCCCCCC-cH---HHHHHHHHHhCCCCeEEEEeCC
Confidence 334455666777899999998763321 11 123344433 246888887544
No 210
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=39.82 E-value=57 Score=19.17 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=21.9
Q ss_pred cCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcCC
Q 031355 116 HHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKRP 157 (161)
Q Consensus 116 ~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~~ 157 (161)
..+|+|++...-.. ..+ -...+.+-.. ..+|++++-..
T Consensus 61 ~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~t~~ 101 (149)
T 1k66_A 61 PRPAVILLDLNLPG-TDG---REVLQEIKQDEVLKKIPVVIMTTS 101 (149)
T ss_dssp CCCSEEEECSCCSS-SCH---HHHHHHHTTSTTGGGSCEEEEESC
T ss_pred CCCcEEEEECCCCC-CCH---HHHHHHHHhCcccCCCeEEEEeCC
Confidence 68999999865322 111 1233444433 46888887543
No 211
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=39.80 E-value=87 Score=21.31 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=25.4
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
.+|+|++++...|..++..+.... . ++.++|+..
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~--~-------~v~vv~idt 79 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR--P-------DIPVILTDT 79 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS--T-------TCEEEECCC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC--C-------CCeEEEecC
Confidence 489999999999998888776653 1 456677643
No 212
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=39.56 E-value=1.1e+02 Score=22.23 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... + + -+|+++|=....... . .-+.+.+++...+++.+.+
T Consensus 144 ~~~eRiar~AF~~A~~r-~-r--kkvt~v~KaNvlk~t----------------~------glf~~~~~eva~eyp~I~~ 197 (333)
T 1x0l_A 144 KASERIGRAALRIAEGR-P-R--KTLHIAHKANVLPLT----------------Q------GLFLDTVKEVAKDFPLVNV 197 (333)
T ss_dssp HHHHHHHHHHHHHHHTS-T-T--CEEEEEECTTTCTTH----------------H------HHHHHHHHHHHTTCTTSEE
T ss_pred HHHHHHHHHHHHHHHhc-C-C--CeEEEEecCccchhh----------------h------HHHHHHHHHHHHHCCCceE
Confidence 46889999999999975 3 1 378888865543211 0 1222344445556666544
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+... -.+..-.++..=. +.|.||..
T Consensus 198 ~~~~-vD~~~m~lv~~P~--~FDVivt~ 222 (333)
T 1x0l_A 198 QDII-VDNCAMQLVMRPE--RFDVIVTT 222 (333)
T ss_dssp EEEE-HHHHHHHHHHCGG--GCSEEEEC
T ss_pred EEEE-HHHHHHHHhhCcc--cceEEEEc
Confidence 4443 2344444544444 77877763
No 213
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=39.52 E-value=1e+02 Score=21.94 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=36.2
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 95 ViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 156 (314)
T 3qze_A 95 VIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYN 156 (314)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEE
T ss_pred EEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4333333344444 45779999999999987643322111112344567778899999874
No 214
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=39.25 E-value=56 Score=18.89 Aligned_cols=52 Identities=2% Similarity=-0.019 Sum_probs=28.9
Q ss_pred cCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcCC
Q 031355 102 EGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKRP 157 (161)
Q Consensus 102 ~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~~ 157 (161)
..+..+.+........+|+|++...-... .+ -.+.+.+-.. ..+||+++-..
T Consensus 36 ~~~~~~a~~~~~~~~~~dlvi~D~~~p~~-~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 36 AEHGVEAWEKLDANADTKVLITDWNMPEM-NG---LDLVKKVRSDSRFKEIPIIMITAE 90 (129)
T ss_dssp ESSHHHHHHHHHHCTTCCEEEECSCCSSS-CH---HHHHHHHHTSTTCTTCCEEEEESC
T ss_pred eCCHHHHHHHHHhCCCCCEEEEeCCCCCC-CH---HHHHHHHHhcCCCCCCeEEEEeCC
Confidence 34555555555554579999998653221 11 1233444332 36889888654
No 215
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=39.09 E-value=95 Score=21.51 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=29.2
Q ss_pred CChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 103 GDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 103 g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.+..++ ++..++..+|+|++...-+....++ .+.+.+-....+||+++-..
T Consensus 192 ~~g~eA-l~~~~~~~~dlvl~D~~MPd~mdG~---e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 192 ATRGEA-LEAVTRRTPGLVLADIQLADGSSGI---DAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp SSHHHH-HHHHHHCCCSEEEEESCCTTSCCTT---TTTHHHHHHTTCCEEEEESC
T ss_pred CCHHHH-HHHHHhCCCCEEEEcCCCCCCCCHH---HHHHHHHhcCCCCEEEEeCC
Confidence 344444 4455667899999986543112211 23344444448999998643
No 216
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=39.09 E-value=17 Score=26.01 Aligned_cols=52 Identities=8% Similarity=0.015 Sum_probs=35.1
Q ss_pred cCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEE
Q 031355 102 EGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMI 153 (161)
Q Consensus 102 ~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlv 153 (161)
.-.-...+++.|++.+..+|+-.+.+........+......+..+..+||.+
T Consensus 36 n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaL 87 (306)
T 3pm6_A 36 NLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITL 87 (306)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEE
Confidence 3378999999999999999998765422211111223445567788999865
No 217
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=38.93 E-value=56 Score=18.82 Aligned_cols=22 Identities=5% Similarity=-0.111 Sum_probs=15.7
Q ss_pred HhHHHHHHHhcCCCEEEEecCC
Q 031355 106 RNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~ 127 (161)
.++..+..++..+|+|++...-
T Consensus 39 ~~~a~~~l~~~~~dlii~d~~l 60 (132)
T 3lte_A 39 GFDAGIKLSTFEPAIMTLDLSM 60 (132)
T ss_dssp HHHHHHHHHHTCCSEEEEESCB
T ss_pred HHHHHHHHHhcCCCEEEEecCC
Confidence 3444556677899999998763
No 218
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=38.72 E-value=1.1e+02 Score=22.36 Aligned_cols=77 Identities=5% Similarity=-0.017 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... . -+|+++|=.... +...-+.+.+++..++++.+.+
T Consensus 167 ~~~eRIar~AFe~A~~r-r----kkVT~v~KaNvl-----------------------~t~glf~~~~~eva~eypdV~~ 218 (361)
T 3udu_A 167 KEIERIARIAFESARIR-K----KKVHLIDKANVL-----------------------ASSILWREVVANVAKDYQDINL 218 (361)
T ss_dssp HHHHHHHHHHHHHHHHT-T----SEEEEEECTTTC-----------------------HHHHHHHHHHHHHGGGCTTSEE
T ss_pred HHHHHHHHHHHHHHHHc-C----CcEEEEECchhh-----------------------ccchHHHHHHHHHHHHCCCCeE
Confidence 46788999999999875 4 489988854331 0112333445556667776645
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+.... .+..-.++..=. +.|.||..
T Consensus 219 ~~~~V-D~~am~lv~~P~--~FDViVt~ 243 (361)
T 3udu_A 219 EYMYV-DNAAMQIVKNPS--IFDVMLCS 243 (361)
T ss_dssp EEEEH-HHHHHHHHHCGG--GCSEEEEC
T ss_pred EeeeH-HHHHHHHHhCcc--cCcEEEec
Confidence 44332 344445554333 78888774
No 219
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=38.66 E-value=1.2e+02 Score=22.36 Aligned_cols=36 Identities=8% Similarity=0.195 Sum_probs=26.1
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
..++|+|++++...|..++..+.+ . | .+|..+|+..
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~----~-G----~~V~~v~~~~ 51 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ----Q-G----YQVEGLFMKN 51 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT----T-C----CEEEEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH----c-C----CeEEEEEEEc
Confidence 346799999999888777665543 2 4 5899998854
No 220
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=38.64 E-value=58 Score=18.93 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=27.5
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
..+.++..++..+|++++...-.. ..+ -...+.+-.. ..+||+++-..
T Consensus 38 ~~~al~~~~~~~~dlvilD~~lp~-~~g---~~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 38 GLDAMKLIEEYNPNVVILDIEMPG-MTG---LEVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSS-SCH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHhhcCCCEEEEecCCCC-CCH---HHHHHHHHHHCCCCcEEEEecC
Confidence 344455566678999999876332 111 1234444433 46888888543
No 221
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=38.57 E-value=1e+02 Score=21.64 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=35.5
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 74 viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 135 (292)
T 3daq_A 74 VIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYN 135 (292)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred EEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4444433344444 45779999999998886543322111111234557777799999874
No 222
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=38.51 E-value=56 Score=23.09 Aligned_cols=105 Identities=12% Similarity=-0.023 Sum_probs=53.4
Q ss_pred EEEEecCCh---hHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHH
Q 031355 9 MVVGIDDSE---QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (161)
Q Consensus 9 ilv~~d~s~---~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (161)
-|+.+.+.+ .....+++.++++... + .+|.++-.... . . +...+.++
T Consensus 28 ~l~iiGGgedk~~~~~i~~~~v~lagg~-~----~~I~~IptAs~--~-------------------~----~~~~~~~~ 77 (291)
T 3en0_A 28 AILIIGGAEDKVHGREILQTFWSRSGGN-D----AIIGIIPSASR--E-------------------P----LLIGERYQ 77 (291)
T ss_dssp CEEEECSSCCSSSCCHHHHHHHHHTTGG-G----CEEEEECTTCS--S-------------------H----HHHHHHHH
T ss_pred eEEEEECCCCccChHHHHHHHHHHcCCC-C----CeEEEEeCCCC--C-------------------h----HHHHHHHH
Confidence 455555444 2457888888888753 2 35555422111 0 0 11222333
Q ss_pred HHhhhcCCccEEEEEEc---CChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh
Q 031355 86 EICSSKSVHDFVVEVVE---GDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH 145 (161)
Q Consensus 86 ~~~~~~~~~~~~~~v~~---g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~ 145 (161)
+.+.+.|...++..... ......+.+..+ ++|.|+++.-....+.+.+.++-..++++
T Consensus 78 ~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l~~~L~ 138 (291)
T 3en0_A 78 TIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCGLLADTPLMDRIR 138 (291)
T ss_dssp HHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHHHHHhCCHHHHHH
Confidence 44444565334433321 123345667777 89999998765444444444444444443
No 223
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=38.42 E-value=36 Score=23.29 Aligned_cols=48 Identities=6% Similarity=0.125 Sum_probs=28.9
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.++++...+.++|+|.+|-......... -...+.+- ....|+++.+-.
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~~--~~~v~~ir-~~~~Pivl~~y~ 70 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEKA--RTLIEKVS-QYGLPIVVEPSD 70 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHHH--HHHHHHHT-TSCCCEEECCSS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHH--HHHHHHhc-CCCCCEEEecCC
Confidence 4567778888999999996422222211 12333343 367898887643
No 224
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=38.24 E-value=79 Score=20.37 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=23.0
Q ss_pred HHHHHHhhhcCCccEEEEEEcCCh---HhHHHHHHHhcCCCEEEEe
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDA---RNILCEAVEKHHASILVVG 124 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~---~~~I~~~a~~~~~dliVlg 124 (161)
..+.+++.+.|.......+..+++ .+.|.+.+++.++|+||..
T Consensus 43 ~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 344555666676534444444442 2344444443359999874
No 225
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=38.14 E-value=1e+02 Score=21.64 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=36.3
Q ss_pred EEEEEEcCChHh--HHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARN--ILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~--~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+ ++.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 79 viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 140 (297)
T 3flu_A 79 VIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYN 140 (297)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred EEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 444433334444 445779999999999887643322111112344567778899999874
No 226
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=38.10 E-value=60 Score=18.90 Aligned_cols=44 Identities=7% Similarity=-0.071 Sum_probs=25.4
Q ss_pred HHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcC-CCcEEEEcCC
Q 031355 110 CEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHA-HCTVMIVKRP 157 (161)
Q Consensus 110 ~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~-~~pvlvv~~~ 157 (161)
++...+..+|+|++...-... .+ -.+.+.+-... .+||+++-..
T Consensus 52 ~~~l~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 52 KGPPADTRPGIVILDLGGGDL-LG---KPGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp GCCCTTCCCSEEEEEEETTGG-GG---STTHHHHHGGGTTCCEEEEESC
T ss_pred HHHHhccCCCEEEEeCCCCCc-hH---HHHHHHHHhhCCCCcEEEEeCC
Confidence 344467789999998653321 11 12334444333 6888888554
No 227
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=38.05 E-value=1.1e+02 Score=21.80 Aligned_cols=59 Identities=7% Similarity=-0.075 Sum_probs=34.8
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+.. +..+. +.+.|++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 84 ViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (316)
T 3e96_A 84 VVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYF 144 (316)
T ss_dssp EEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred EEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4444432 44444 45679999999999976543221111111233557777799999874
No 228
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=37.63 E-value=52 Score=24.23 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCCccEEEEEEcCC----hHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 80 VVEEAKEICSSKSVHDFVVEVVEGD----ARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~v~~g~----~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
..+++.+.+++ +.. +.+....++ ..+.+.+.+++.++|.||-- -|.+ ..+++.-+.....+|++.||
T Consensus 67 ~~~~v~~~L~~-g~~-~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIav-GGGs------~~D~AK~iA~~~~~p~i~IP 137 (387)
T 3uhj_A 67 LSERIGKSCGD-SLD-IRFERFGGECCTSEIERVRKVAIEHGSDILVGV-GGGK------TADTAKIVAIDTGARIVIAP 137 (387)
T ss_dssp HHHHC-------CCE-EEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEE-SSHH------HHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHc-CCC-eEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEe-CCcH------HHHHHHHHHHhcCCCEEEec
Confidence 34555555555 543 433444453 35667777888899976542 2211 13455556666789999998
Q ss_pred CC
Q 031355 156 RP 157 (161)
Q Consensus 156 ~~ 157 (161)
-.
T Consensus 138 TT 139 (387)
T 3uhj_A 138 TI 139 (387)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 229
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=37.42 E-value=23 Score=25.20 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=8.7
Q ss_pred EEEEEEecCCC
Q 031355 41 KLVIVHARPSP 51 (161)
Q Consensus 41 ~l~~l~v~~~~ 51 (161)
.+.++|+.+.-
T Consensus 18 ~mrilh~SD~H 28 (336)
T 2q8u_A 18 ELKILHTSDWH 28 (336)
T ss_dssp EEEEEEEECCC
T ss_pred ceEEEEECccc
Confidence 78889988764
No 230
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=37.39 E-value=17 Score=25.79 Aligned_cols=53 Identities=6% Similarity=0.107 Sum_probs=38.7
Q ss_pred EcCChHhHHHHHHHhcCCCEEEEecCCCCccee-eeccchHHHHhhcCCCcEEE
Q 031355 101 VEGDARNILCEAVEKHHASILVVGSHGYGAIKR-AVLGSVSDYCAHHAHCTVMI 153 (161)
Q Consensus 101 ~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~-~~~gs~~~~ll~~~~~pvlv 153 (161)
..-.-...+++.|++.+..+|+-.+.+.....+ ..+......+..+.++||.+
T Consensus 26 ~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPVal 79 (286)
T 1gvf_A 26 HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLAL 79 (286)
T ss_dssp CSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEE
Confidence 334789999999999999999988775322221 23456777788888999875
No 231
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=37.32 E-value=30 Score=24.52 Aligned_cols=46 Identities=7% Similarity=0.117 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEE-Ec
Q 031355 109 LCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMI-VK 155 (161)
Q Consensus 109 I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlv-v~ 155 (161)
+++.+.+.+.|.|++|+.+-+.|... +..+...+=+.+..||++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCCCCEEEECC
Confidence 66777788999999994333322221 133445455558999999 87
No 232
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=37.28 E-value=1e+02 Score=21.50 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=36.2
Q ss_pred EEEEEEcCChHh--HHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARN--ILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~--~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+ ++.+.+++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 73 viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 134 (291)
T 3tak_A 73 IIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYN 134 (291)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 433333334444 445779999999999987643322111112344567778899999874
No 233
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=37.23 E-value=64 Score=19.03 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=29.6
Q ss_pred cCChHhHHHHHHHh-cCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 102 EGDARNILCEAVEK-HHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 102 ~g~~~~~I~~~a~~-~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
..+..+.+....+. ..+|+||+...-.. ..+ -.+.+.+-.. ..+||+++-..
T Consensus 51 ~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 51 TVGRAAQIVQRTDGLDAFDILMIDGAALD-TAE---LAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp ECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHH---HHHHHHHHHHCTTCEEEEEESC
T ss_pred eCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccH---HHHHHHHHHhCCCCcEEEEeCC
Confidence 34555566665555 79999999876332 111 1233333332 35788887543
No 234
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=37.06 E-value=85 Score=20.35 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=28.1
Q ss_pred CCCCCceeEEEEec-CChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 1 MATAETQTMVVGID-DSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 1 ~~~~~~~~ilv~~d-~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
|....+.+||+.+. ....+...++...+-+... | .++.++.+.+.
T Consensus 1 ~~~~~mmkilii~~S~~g~T~~la~~i~~~l~~~-g----~~v~~~~l~~~ 46 (211)
T 1ydg_A 1 MSLTAPVKLAIVFYSSTGTGYAMAQEAAEAGRAA-G----AEVRLLKVRET 46 (211)
T ss_dssp ----CCCEEEEEECCSSSHHHHHHHHHHHHHHHT-T----CEEEEEECCCC
T ss_pred CCcCCCCeEEEEEECCCChHHHHHHHHHHHHhcC-C----CEEEEEecccc
Confidence 44444557777665 3345677777777777654 6 68888887664
No 235
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=36.71 E-value=73 Score=19.53 Aligned_cols=39 Identities=8% Similarity=-0.097 Sum_probs=25.4
Q ss_pred CceeEEEEecCChh----HHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 5 ETQTMVVGIDDSEQ----STYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 5 ~~~~ilv~~d~s~~----s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
.++++++.+..+|+ +..++++|...+.. + -.+.++...+
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~--~----~~v~Vff~~D 46 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF--D----QDVCVLFLDD 46 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG--C----CEEEEEECGG
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC--C----CCEEEEEEhH
Confidence 35678888887665 46677777776664 4 3776665543
No 236
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=35.75 E-value=68 Score=19.19 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=27.3
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.++-++.++++.+|++++--.=++ ..++ .+.+ .++..++||+++-.
T Consensus 42 g~eAl~~~~~~~~DlvllDi~mP~-~~G~---el~~-~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIIDVNLDG-EPSY---PVAD-ILAERNVPFIFATG 87 (123)
T ss_dssp HHHHHHHHHHCCSSEEEECSSSSS-CCSH---HHHH-HHHHTCCSSCCBCT
T ss_pred HHHHHHHHHhCCCCEEEEecCCCC-CCHH---HHHH-HHHcCCCCEEEEec
Confidence 344445667789999999865322 1111 2333 44556789888754
No 237
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=35.74 E-value=1e+02 Score=22.59 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcCCccEEEEEEcCC----hHhHHHHHHHhcCCCEEEE
Q 031355 81 VEEAKEICSSKSVHDFVVEVVEGD----ARNILCEAVEKHHASILVV 123 (161)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~v~~g~----~~~~I~~~a~~~~~dliVl 123 (161)
.+++.+.+++.+.....+.-..++ ..+.+.+.+++.++|.||-
T Consensus 48 ~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 94 (383)
T 3ox4_A 48 VKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVIS 94 (383)
T ss_dssp HHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEE
Confidence 445555555555431122222232 3667778888999997654
No 238
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=35.74 E-value=74 Score=21.60 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEE
Q 031355 108 ILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMI 153 (161)
Q Consensus 108 ~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlv 153 (161)
++.+...+.++|.|.+......+......-.....+...+.+||++
T Consensus 34 ~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~ 79 (266)
T 2w6r_A 34 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA 79 (266)
T ss_dssp HHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEE
T ss_pred HHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEE
Confidence 3444445556666665332221111111122334444555666655
No 239
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=35.70 E-value=1.4e+02 Score=22.36 Aligned_cols=77 Identities=9% Similarity=-0.029 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... . -+|+++|=.... + ...-+.+.+++..++++.+.+
T Consensus 207 ~~~eRIar~AFe~A~~r-r----kkVT~v~KaNVl-------------------k----~sglf~~~~~eva~eYPdV~~ 258 (405)
T 3r8w_A 207 HEIDRIARVAFETARKR-R----GKLCSVDKANVL-------------------E----ASILWRKRVTALASEYPDVEL 258 (405)
T ss_dssp HHHHHHHHHHHHHHHTT-T----SEEEEEECTTTC-------------------H----HHHHHHHHHHHHGGGSTTSEE
T ss_pred HHHHHHHHHHHHHHHHc-C----CeEEEEECchhh-------------------c----cccHHHHHHHHHHhHCCCCeE
Confidence 46788999999999864 3 488888754331 1 112333445555667776645
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+... -++..-.++..=. ++|.||..
T Consensus 259 ~~~~-VD~~amqLV~~P~--~FDViVt~ 283 (405)
T 3r8w_A 259 SHMY-VDNAAMQLVRDPK--QFDTIVTN 283 (405)
T ss_dssp EEEE-HHHHHHHHHHCGG--GCSEEEEC
T ss_pred Eeee-HHHHHHHHHhChh--hCcEEeec
Confidence 4433 3344445554433 78888763
No 240
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=35.68 E-value=27 Score=25.51 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=35.3
Q ss_pred cCChHhHHHHHHHhcCCCEEEEecCCCCcc-eee----------eccchHHHHhhcCCCcEEE
Q 031355 102 EGDARNILCEAVEKHHASILVVGSHGYGAI-KRA----------VLGSVSDYCAHHAHCTVMI 153 (161)
Q Consensus 102 ~g~~~~~I~~~a~~~~~dliVlg~~~~~~~-~~~----------~~gs~~~~ll~~~~~pvlv 153 (161)
.-....++++.|++.+..+|+-.+.+.... .+. .+...+..+..+.++||.+
T Consensus 30 n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVaL 92 (349)
T 3elf_A 30 SSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVAL 92 (349)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 337899999999999999999876542111 111 1233456677788999865
No 241
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=35.30 E-value=1.2e+02 Score=21.58 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=36.0
Q ss_pred EEEEEEcCChHh--HHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 96 FVVEVVEGDARN--ILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~--~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+-..+...+..+ ++.+.+++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 94 ViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 155 (315)
T 3si9_A 94 VVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYN 155 (315)
T ss_dssp BEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEe
Confidence 433333334444 445779999999999987643322111112334567778899999874
No 242
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=34.92 E-value=73 Score=20.88 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhcCCccEEEEEEc-CChHhHHHHHHHhcCCCEEEEecCCC
Q 031355 79 RVVEEAKEICSSKSVHDFVVEVVE-GDARNILCEAVEKHHASILVVGSHGY 128 (161)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliVlg~~~~ 128 (161)
.+.+.+.+.+.+.+.. ++..-+. ++..+.+.+..+ .+|.||++.+-.
T Consensus 34 ~l~~~~~~~~~~~g~~-v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~y 81 (204)
T 2amj_A 34 TLTEVADGTLRDLGHD-VRIVRADSDYDVKAEVQNFL--WADVVIWQMPGW 81 (204)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEESSSCCCHHHHHHHHH--HCSEEEEEEECB
T ss_pred HHHHHHHHHHHHcCCE-EEEEeCCccccHHHHHHHHH--hCCEEEEECCcc
Confidence 3444444444444432 4433333 345677777777 899999998753
No 243
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=34.83 E-value=69 Score=18.71 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=26.2
Q ss_pred hHHHHHHHh-----cCCCEEEEecCCCCcceeeeccchHHHHhh-----cCCCcEEEEcCC
Q 031355 107 NILCEAVEK-----HHASILVVGSHGYGAIKRAVLGSVSDYCAH-----HAHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~-----~~~dliVlg~~~~~~~~~~~~gs~~~~ll~-----~~~~pvlvv~~~ 157 (161)
++.++..++ ..+|+|++...-... .+ -.+.+.+-. ...+|++++-..
T Consensus 45 ~~a~~~l~~~~~~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 45 NAAINKLNELYAAGRWPSIICIDINMPGI-NG---WELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp HHHHHHHHHHHTSSCCCSEEEEESSCSSS-CH---HHHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred HHHHHHHHHhhccCCCCCEEEEcCCCCCC-CH---HHHHHHHHHhhhhccCCCeEEEEeCC
Confidence 333445555 789999998763321 11 123344433 356888887543
No 244
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=34.47 E-value=68 Score=23.35 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHhcCCCEEEEecCCC---CcceeeeccchHHH-HhhcCCCcEEEEcC
Q 031355 112 AVEKHHASILVVGSHGY---GAIKRAVLGSVSDY-CAHHAHCTVMIVKR 156 (161)
Q Consensus 112 ~a~~~~~dliVlg~~~~---~~~~~~~~gs~~~~-ll~~~~~pvlvv~~ 156 (161)
..++.++|.+++|..+- +..-. -.|...-. +.++.++|++|+-+
T Consensus 222 ~M~~~~Vd~VivGAd~V~aNG~v~N-KiGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 222 LMKRGLIDAVVVGADRIALNGDTAN-KIGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHHTTCCSEEEECCSEEETTSCEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HhhcCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEecc
Confidence 34556799999999852 22222 24544444 44567899999843
No 245
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=34.46 E-value=66 Score=18.37 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=27.1
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~~ 157 (161)
.+.++..++..+|++++...-.+ ..+ -.+.+.+-.. ..+||+++-..
T Consensus 36 ~~al~~l~~~~~dlvllD~~~p~-~~g---~~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 36 QIALEKLSEFTPDLIVLXIMMPV-MDG---FTVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp HHHHHHHTTBCCSEEEECSCCSS-SCH---HHHHHHHHTSTTTTTSCEEEEESC
T ss_pred HHHHHHHHhcCCCEEEEeccCCC-CcH---HHHHHHHHhcccccCCCEEEEecC
Confidence 34455667789999999865322 111 1233444322 36888888653
No 246
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=34.34 E-value=65 Score=18.21 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=26.2
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~~ 157 (161)
.+.....++..+|++++...-... .+ -...+.+-.. ..+|++++-..
T Consensus 35 ~~a~~~~~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 35 LSALSIARENKPDLILMDIQLPEI-SG---LEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHHHHHHCCSEEEEESBCSSS-BH---HHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCC-CH---HHHHHHHHcCccccCCcEEEEECC
Confidence 344455666789999998653321 11 1234444432 36899888543
No 247
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=34.33 E-value=58 Score=22.40 Aligned_cols=58 Identities=9% Similarity=0.016 Sum_probs=33.1
Q ss_pred HHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHH
Q 031355 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYC 143 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~l 143 (161)
+..+.+++.|.. .-..+..+.+.+.+..+.. ..|+|.+.+...++-.+.|..+..+++
T Consensus 125 ~~i~~ir~~G~k-~Gvalnp~Tp~e~l~~~l~--~vD~VlvMsV~PGfgGQ~fi~~~l~KI 182 (246)
T 3inp_A 125 RSLQLIKSFGIQ-AGLALNPATGIDCLKYVES--NIDRVLIMSVNPGFGGQKFIPAMLDKA 182 (246)
T ss_dssp HHHHHHHTTTSE-EEEEECTTCCSGGGTTTGG--GCSEEEEECSCTTC--CCCCTTHHHHH
T ss_pred HHHHHHHHcCCe-EEEEecCCCCHHHHHHHHh--cCCEEEEeeecCCCCCcccchHHHHHH
Confidence 334444555643 5555555677777777777 688888776554443344555444443
No 248
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=34.11 E-value=70 Score=23.58 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHhcCCCEEEEecCCC---CcceeeeccchHHH-HhhcCCCcEEEEcC
Q 031355 112 AVEKHHASILVVGSHGY---GAIKRAVLGSVSDY-CAHHAHCTVMIVKR 156 (161)
Q Consensus 112 ~a~~~~~dliVlg~~~~---~~~~~~~~gs~~~~-ll~~~~~pvlvv~~ 156 (161)
..++.++|.+|+|+.+- +..-. -.|...-. +.++.++|++|+-+
T Consensus 247 ~M~~~~Vd~ViVGAD~V~aNG~v~N-KiGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 247 TMKEKQISAVIVGADRIAKNGDTAN-KIGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HHHHTTCCEEEECCSEEETTCCEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HhhhcCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEecc
Confidence 34456799999999852 22222 24544444 44567899999844
No 249
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=34.07 E-value=97 Score=21.22 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=26.8
Q ss_pred hHHHHHHH--hcCCCEEEEecCCCCcceeeec-cchHHHHhhcCCCcEEEEcC
Q 031355 107 NILCEAVE--KHHASILVVGSHGYGAIKRAVL-GSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 107 ~~I~~~a~--~~~~dliVlg~~~~~~~~~~~~-gs~~~~ll~~~~~pvlvv~~ 156 (161)
+.|.+..+ ..++|++|+-..+.- ...+-. |.....++....+||++|-.
T Consensus 114 ~~i~~~~~~l~~~~D~vlIEGagGl-~~pl~~~~~~~adla~~l~~pVILV~~ 165 (251)
T 3fgn_A 114 DQIVRLIADLDRPGRLTLVEGAGGL-LVELAEPGVTLRDVAVDVAAAALVVVT 165 (251)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSSST-TCEEETTTEEHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCC-cCCcCcccchHHHHHHHcCCCEEEEEc
Confidence 34554433 347888888654321 111111 12444588888889888743
No 250
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=34.06 E-value=72 Score=18.65 Aligned_cols=47 Identities=4% Similarity=-0.029 Sum_probs=27.3
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
..+.++..++..+|+|++.. -. ...+ -...+.+-.. ..+||+++-..
T Consensus 37 ~~~a~~~l~~~~~dlvi~d~-~~-~~~g---~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 37 EQEAFTFLRREKIDLVFVDV-FE-GEES---LNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHHTTSCCSEEEEEC-TT-THHH---HHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHhccCCCEEEEeC-CC-CCcH---HHHHHHHHHHCCCCCEEEEECC
Confidence 34455666777999999997 32 2211 1233334333 35888888543
No 251
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=34.01 E-value=1.2e+02 Score=21.24 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=37.1
Q ss_pred ccEEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCc-ceeeeccchHHHHhhcC---CCcEEEEc
Q 031355 94 HDFVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGA-IKRAVLGSVSDYCAHHA---HCTVMIVK 155 (161)
Q Consensus 94 ~~~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~-~~~~~~gs~~~~ll~~~---~~pvlvv~ 155 (161)
.++-..+...+..+. +.+.|++.++|-+++...-... ...--+-..-..|...+ +.||++..
T Consensus 73 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn 140 (294)
T 3b4u_A 73 SRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYN 140 (294)
T ss_dssp GGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred CcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 334444444455544 4677899999999998664333 11111112334577777 79999864
No 252
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=33.95 E-value=1.4e+02 Score=21.99 Aligned_cols=126 Identities=11% Similarity=0.039 Sum_probs=60.8
Q ss_pred eeEEEEecCC--hhHHHHHHHHHHHhhccCCCCCCcE----EE-EEEecCCC-CcccccCCCCCcCcccccchHHHHHHH
Q 031355 7 QTMVVGIDDS--EQSTYALQWTLDHFFANSTVNPPFK----LV-IVHARPSP-SAVIGLAGPGAVEVLPHVDSDFKKIAA 78 (161)
Q Consensus 7 ~~ilv~~d~s--~~s~~al~~a~~la~~~~~~~~~a~----l~-~l~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (161)
++++|-+.+- +.-..+++||-+++... .+ +. ++-++-.. .......+...+......-+. ...-
T Consensus 67 ~rllvIaGPCSIed~e~aleyA~~Lk~~~------~~~~d~l~iVmR~yfeKPRTs~GwKGli~dP~ld~Sf~g--~~GL 138 (370)
T 1of8_A 67 DRVLVIVGPCSIHDLEAAQEYALRLKKLS------DELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNI--NKGL 138 (370)
T ss_dssp CSEEEEEECSCCCCHHHHHHHHHHHHHHH------HHHTTTEEEEEECCCCCCCSSSSCCCTTTCTTSSSCCCH--HHHH
T ss_pred CCeEEEEeCCcCCCHHHHHHHHHHHHHHH------HhhccCeEEEEEeccccccCCccccccccCCCcCCCcCH--HHHH
Confidence 4566666533 45678888888888763 23 22 23333222 222111111111111111111 2222
Q ss_pred HHHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEE---EEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 79 RVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASIL---VVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dli---Vlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+.+.++...+.+.|.. +-+.+..-...+.+ +|+| -+|++.-.. ..-..+...+.|||.+=+
T Consensus 139 ~i~r~ll~~v~e~GlP-vaTEvld~~~~qyv--------~Dllsw~aIGARt~es-------q~hre~Asgl~~PVg~Kn 202 (370)
T 1of8_A 139 QSARQLFVNLTNIGLP-IGSEMLDTISPQYL--------ADLVSFGAIGARTTES-------QLHRELASGLSFPVGFKN 202 (370)
T ss_dssp HHHHHHHHHHHTTTCC-EEEECCSSSTHHHH--------GGGCSEEEECTTTTTC-------HHHHHHHHTCSSCEEEEC
T ss_pred HHHHHHHHHHHHcCCc-eEEeecCcccHHHH--------HHHHhhccccCccccc-------HHHHHHHhcCCCeEEEcC
Confidence 2223333333566665 77777666444333 7888 688764321 233456667899998754
Q ss_pred C
Q 031355 156 R 156 (161)
Q Consensus 156 ~ 156 (161)
.
T Consensus 203 g 203 (370)
T 1of8_A 203 G 203 (370)
T ss_dssp C
T ss_pred C
Confidence 3
No 253
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=33.92 E-value=64 Score=19.06 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=11.6
Q ss_pred hHHHHHHHhcCCCEEEEecC
Q 031355 107 NILCEAVEKHHASILVVGSH 126 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~ 126 (161)
.+.++..++..+|++++...
T Consensus 39 ~~al~~~~~~~~dlvllD~~ 58 (141)
T 3cu5_A 39 INAIQIALKHPPNVLLTDVR 58 (141)
T ss_dssp HHHHHHHTTSCCSEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEeCC
Confidence 33344455556777777654
No 254
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=33.68 E-value=72 Score=23.59 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=28.0
Q ss_pred HHHhcCCCEEEEecCCC--C-cceeeeccchHHHH-hhcCCCcEEEEcC
Q 031355 112 AVEKHHASILVVGSHGY--G-AIKRAVLGSVSDYC-AHHAHCTVMIVKR 156 (161)
Q Consensus 112 ~a~~~~~dliVlg~~~~--~-~~~~~~~gs~~~~l-l~~~~~pvlvv~~ 156 (161)
..++.++|.+|+|..+- + ..-. -.|...-.+ .++.++|++|+-+
T Consensus 251 ~M~~~~Vd~ViVGAD~V~aNG~v~N-KiGTy~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 251 LMLNRKIDAVVVGADRICQNGDTAN-KIGTYNLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HHHHSCCCEEEECCSEECTTCCEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HhhcCCCCEEEECccEEecCCCEee-cccHHHHHHHHHHcCCCEEEeCC
Confidence 34456799999999852 2 2222 245554444 4567899999844
No 255
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=33.64 E-value=1.4e+02 Score=21.81 Aligned_cols=79 Identities=13% Similarity=0.031 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHh-hhcCCcc
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEIC-SSKSVHD 95 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 95 (161)
..+++.+++|+++|... + + -+|+++|=....... . .-+.+.+++.. .+++.+.
T Consensus 157 ~~~eRiar~AF~~A~~r-~-r--kkVt~v~KaNvlk~s----------------d------glf~~~~~eva~~eyp~i~ 210 (349)
T 3blx_A 157 PKTERIARFAFDFAKKY-N-R--KSVTAVHKANIMKLG----------------D------GLFRNIITEIGQKEYPDID 210 (349)
T ss_dssp HHHHHHHHHHHHHHHHT-T-C--CEEEEEECTTTSTTH----------------H------HHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHHHHHHHhc-C-C--CcEEEEeCCccchhh----------------H------HHHHHHHHHHHHhhCCCee
Confidence 46789999999999975 3 1 378888865543211 0 11223334444 4566654
Q ss_pred EEEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 96 FVVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 96 ~~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
++.... ++..-.++..-. +.|.||..
T Consensus 211 ~~~~~v-D~~~~qlv~~P~--~FDVivt~ 236 (349)
T 3blx_A 211 VSSIIV-DNASMQAVAKPH--QFDVLVTP 236 (349)
T ss_dssp EEEEEH-HHHHHHHHHCGG--GCSEEEEC
T ss_pred EEEeeH-HHHHHHHhhCcc--cccEEEEC
Confidence 444432 344444544444 77877764
No 256
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=33.64 E-value=73 Score=18.60 Aligned_cols=38 Identities=5% Similarity=0.057 Sum_probs=21.9
Q ss_pred cCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcCC
Q 031355 116 HHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKRP 157 (161)
Q Consensus 116 ~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~~ 157 (161)
..+|+|++...-.. ..+ -.+.+.+-.. ..+|++++-..
T Consensus 58 ~~~dlii~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 58 IHPKLILLDINIPK-MNG---IEFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp CCCSEEEEETTCTT-SCH---HHHHHHHTTSGGGTTCEEEEEESC
T ss_pred CCCCEEEEecCCCC-CCH---HHHHHHHHcCccccCCcEEEEeCC
Confidence 68999999865332 111 1233444333 46888887543
No 257
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=33.45 E-value=1.3e+02 Score=21.33 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=47.4
Q ss_pred ceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHH
Q 031355 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAK 85 (161)
Q Consensus 6 ~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (161)
.++++|.+++ -.|.-++..+ ... | .++..+|+. . . +...+.+.+.-+.+.
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll----~~~-G----~~v~~v~~~-~-~------------------~~~~~~a~~~a~~l~ 228 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLM----MKR-G----VEVIPVYIG-K-D------------------DKNLEKVRSLWNLLK 228 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHH----HHB-T----CEEEEEEES-C-S------------------SHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeC-CcHHHHHHHH----HhC-C----CeEEEEEEE-E-C------------------HHHHHHHHHHHHHHh
Confidence 3689999999 8876554433 334 6 799999986 1 0 111122222222221
Q ss_pred HHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecC
Q 031355 86 EICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSH 126 (161)
Q Consensus 86 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~ 126 (161)
.+....+ +...+... ...+.++|++.++|.|+.|.+
T Consensus 229 ~~~~~~~---i~~~vv~~--~~~~~~~A~~~ga~~I~tG~~ 264 (307)
T 1vbk_A 229 RYSYGSK---GFLVVAES--FDRVLKLIRDFGVKGVIKGLR 264 (307)
T ss_dssp TTCTTSC---CCCEEESS--HHHHHHHHHHHTCCEEECCCC
T ss_pred hhccCCC---CcEEEeCC--CHHHHHHHHHcCCCEEEECcc
Confidence 1101112 22223320 334448999999999999976
No 258
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=32.96 E-value=80 Score=18.84 Aligned_cols=47 Identities=6% Similarity=-0.015 Sum_probs=27.3
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~ 156 (161)
....++...+..+|+|++...-... .+ -.+.+.+-.. ..+||+++-.
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 40 PLDALEALKGTSVQLVISDMRMPEM-GG---EVFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp HHHHHHHHTTSCCSEEEEESSCSSS-CH---HHHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCC-CH---HHHHHHHHHhCCCCcEEEEec
Confidence 4455566677789999998653321 11 1233444332 4688888744
No 259
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=32.92 E-value=1.3e+02 Score=21.11 Aligned_cols=104 Identities=11% Similarity=0.068 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccEE
Q 031355 18 QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFV 97 (161)
Q Consensus 18 ~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (161)
.-..++++|-.++.. | +++.-++++.+......+.+. ..+.+..+++.+++.|.. +-
T Consensus 50 ~~e~a~~~a~~~k~~--g----a~~~k~~~~kprts~~~f~g~----------------g~~gl~~l~~~~~~~Gl~-~~ 106 (276)
T 1vs1_A 50 SWEQVREAALAVKEA--G----AHMLRGGAFKPRTSPYSFQGL----------------GLEGLKLLRRAGDEAGLP-VV 106 (276)
T ss_dssp CHHHHHHHHHHHHHH--T----CSEEECBSSCCCSSTTSCCCC----------------THHHHHHHHHHHHHHTCC-EE
T ss_pred CHHHHHHHHHHHHHh--C----CCEEEeEEEeCCCChhhhcCC----------------CHHHHHHHHHHHHHcCCc-EE
Confidence 445677777776664 5 577666666654422122111 045566777778887865 65
Q ss_pred EEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 98 VEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 98 ~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+.+..-...+.+ .+. +|.+=+|++.-.... .-+.+. .+++||++=..
T Consensus 107 te~~d~~~~~~l----~~~-vd~~kIgs~~~~n~~------ll~~~a-~~~kPV~lk~G 153 (276)
T 1vs1_A 107 TEVLDPRHVETV----SRY-ADMLQIGARNMQNFP------LLREVG-RSGKPVLLKRG 153 (276)
T ss_dssp EECCCGGGHHHH----HHH-CSEEEECGGGTTCHH------HHHHHH-HHTCCEEEECC
T ss_pred EecCCHHHHHHH----HHh-CCeEEECcccccCHH------HHHHHH-ccCCeEEEcCC
Confidence 555554444444 334 799999987543321 112222 34677776543
No 260
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=32.72 E-value=62 Score=19.37 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=8.8
Q ss_pred hHHHHHHHhcCCCEEEE
Q 031355 107 NILCEAVEKHHASILVV 123 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVl 123 (161)
..|.+.+.+.++.+.++
T Consensus 82 ~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 82 KVIIESLAKLHVEVLTI 98 (141)
T ss_dssp HHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHcCCeEEEC
Confidence 44555555555555444
No 261
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=32.50 E-value=73 Score=18.24 Aligned_cols=49 Identities=6% Similarity=-0.055 Sum_probs=26.9
Q ss_pred HhHHHHHHHhc-CCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 106 RNILCEAVEKH-HASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~-~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
.++..+...+. .+|++++...-.....++ ...+.+-.. ..+||+++-..
T Consensus 38 ~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 38 GAKAIEMLKSGAAIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp HHHHHHHHHTTCCCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESS
T ss_pred HHHHHHHHHcCCCCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 34444555665 899999986533211111 233444333 36888888544
No 262
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=32.47 E-value=1.5e+02 Score=21.79 Aligned_cols=79 Identities=5% Similarity=-0.032 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... + + -+|+++|=....... . .-+.+.+++...+++.+.+
T Consensus 166 ~~~eRIar~AFe~A~~r-~-~--kkVt~v~KaNvlk~s----------------~------glf~~~~~eva~eypdv~~ 219 (364)
T 3flk_A 166 RGVDRILKYAFDLAEKR-E-R--KHVTSATKSNGMAIS----------------M------PYWDKRTEAMAAHYPHVSW 219 (364)
T ss_dssp HHHHHHHHHHHHHHHHS-S-S--CEEEEEECTTTSTTH----------------H------HHHHHHHHHHHTTCTTCEE
T ss_pred HHHHHHHHHHHHHHHhc-C-C--CeEEEEECcchhhhH----------------H------HHHHHHHHHHHHHCCCceE
Confidence 46888999999999875 4 1 269988864442211 0 1222334444556666544
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+.... .+.+-.++..=. +.|.||..
T Consensus 220 ~~~~v-D~~am~lv~~P~--~FDVivt~ 244 (364)
T 3flk_A 220 DKQHI-DILCARFVLQPE--RFDVVVAS 244 (364)
T ss_dssp EEEEH-HHHHHHHHHCGG--GCSEEEEC
T ss_pred EeeEH-HHHHHHHHhCcc--cCcEEEec
Confidence 44333 344445554444 78877764
No 263
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=32.37 E-value=73 Score=21.57 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=32.9
Q ss_pred HHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHH
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSD 141 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~ 141 (161)
.+..+.+++.|.. .-..+.-+.|.+.+..+.. .+|+|.+.+...++-.+.|..+..+
T Consensus 96 ~~~i~~i~~~G~k-~gv~lnp~tp~~~~~~~l~--~~D~VlvmsV~pGfggQ~f~~~~l~ 152 (231)
T 3ctl_A 96 FRLIDEIRRHDMK-VGLILNPETPVEAMKYYIH--KADKITVMTVDPGFAGQPFIPEMLD 152 (231)
T ss_dssp HHHHHHHHHTTCE-EEEEECTTCCGGGGTTTGG--GCSEEEEESSCTTCSSCCCCTTHHH
T ss_pred HHHHHHHHHcCCe-EEEEEECCCcHHHHHHHHh--cCCEEEEeeeccCcCCccccHHHHH
Confidence 3444555555653 4454545678888877776 7898876655444334344444433
No 264
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=32.35 E-value=1.3e+02 Score=21.03 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=32.6
Q ss_pred ChHhH--HHHHHHhcCCCEEEEecCCCCc-ceeeeccchHHHHhhcCCCcEEEEc
Q 031355 104 DARNI--LCEAVEKHHASILVVGSHGYGA-IKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 104 ~~~~~--I~~~a~~~~~dliVlg~~~~~~-~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+..+. +.+.|++.++|-+++..+-... ...--+-..-..|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYN 130 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 44444 4677899999999888664433 1111111233457778899999864
No 265
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=32.25 E-value=66 Score=20.43 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=22.5
Q ss_pred HHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHh---cCCCEEEEe
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDARNILCEAVEK---HHASILVVG 124 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~---~~~dliVlg 124 (161)
..+.+++++.|.......+..++ +.|.+..++ .++|+||..
T Consensus 30 ~~l~~~l~~~G~~v~~~~iv~Dd--~~i~~al~~a~~~~~DlVitt 73 (164)
T 3pzy_A 30 PIITEWLAQQGFSSAQPEVVADG--SPVGEALRKAIDDDVDVILTS 73 (164)
T ss_dssp HHHHHHHHHTTCEECCCEEECSS--HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCH--HHHHHHHHHHHhCCCCEEEEC
Confidence 34455556666543444444444 555544332 479999884
No 266
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=32.17 E-value=99 Score=19.71 Aligned_cols=39 Identities=8% Similarity=-0.137 Sum_probs=26.5
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
.+||+.+.....+...++...+-+... | .++.++.+.+.
T Consensus 5 mkilii~~S~g~T~~la~~i~~~l~~~-g----~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGKGAEEA-G----AEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHHH-S----CEEEEEECCCC
T ss_pred cEEEEEEeCccHHHHHHHHHHHHHHhC-C----CEEEEEehhHh
Confidence 367666655555677777777777655 6 68888887654
No 267
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=31.96 E-value=54 Score=19.63 Aligned_cols=48 Identities=6% Similarity=-0.051 Sum_probs=23.9
Q ss_pred HhHHHHHHHh-cCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 106 RNILCEAVEK-HHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~-~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
.++..+..++ ..+|+|++...-... .+ -...+.+-.. ..+||+++-..
T Consensus 38 ~~~a~~~l~~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 38 VSDALAFLEADNTVDLILLDVNLPDA-EA---IDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHHHHTTCCCSEEEECC-------C---HHHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCCC-ch---HHHHHHHHHhCCCCeEEEEeCC
Confidence 3444555555 789999998653221 11 1233444433 45888887543
No 268
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=31.79 E-value=73 Score=18.05 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=26.1
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh-cCCCcEEEEcC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH-HAHCTVMIVKR 156 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~-~~~~pvlvv~~ 156 (161)
.+.++..++..+|++++...-.+ ..+ -...+.+-. ...+|++++-.
T Consensus 37 ~~a~~~~~~~~~dlvl~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 37 LQALDIVTKERPDLVLLDMKIPG-MDG---IEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp HHHHHHHHHHCCSEEEEESCCTT-CCH---HHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHhccCCCEEEEecCCCC-CCH---HHHHHHHHHhCCCCCEEEEEc
Confidence 34445556678999999865322 111 123344433 34688888754
No 269
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=31.49 E-value=1e+02 Score=19.56 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=20.6
Q ss_pred HHHHhhhcCCccEEEEEEcCCh---HhHHHHHHHhcCCCEEEEe
Q 031355 84 AKEICSSKSVHDFVVEVVEGDA---RNILCEAVEKHHASILVVG 124 (161)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~g~~---~~~I~~~a~~~~~dliVlg 124 (161)
+.+.+.+.|.......+..+++ .+.|.+.+++.++|+||..
T Consensus 36 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 36 LHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3444555566534444444432 2333333332479999884
No 270
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=31.07 E-value=1e+02 Score=24.22 Aligned_cols=65 Identities=5% Similarity=-0.017 Sum_probs=38.4
Q ss_pred HHHhhhcCCccEEEEEEc-CChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh-cCCCcEEEE
Q 031355 85 KEICSSKSVHDFVVEVVE-GDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH-HAHCTVMIV 154 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~-~~~~pvlvv 154 (161)
...++..|. ++.-.. .-|.+.|++.+++.++|+|.+..-...... .+..+.+.+-. ...+||+|-
T Consensus 119 a~~L~~~G~---eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~--~m~~~i~~Lr~~g~~i~ViVG 185 (579)
T 3bul_A 119 GVVLQCNNY---EIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLD--EMVNVAKEMERQGFTIPLLIG 185 (579)
T ss_dssp HHHHHTTTC---EEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHH--HHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHCCC---EEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHH--HHHHHHHHHHHcCCCCeEEEE
Confidence 345555563 333232 368999999999999999999865432221 11223333322 235888775
No 271
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=30.87 E-value=29 Score=24.62 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=37.3
Q ss_pred cCChHhHHHHHHHhcCCCEEEEecCCCCcc-ee-eeccchHHHHhh--cCCCcEEE
Q 031355 102 EGDARNILCEAVEKHHASILVVGSHGYGAI-KR-AVLGSVSDYCAH--HAHCTVMI 153 (161)
Q Consensus 102 ~g~~~~~I~~~a~~~~~dliVlg~~~~~~~-~~-~~~gs~~~~ll~--~~~~pvlv 153 (161)
.-.-...|++.|++.+..+|+-.+.+.... .+ ..+......+.. +..+||.+
T Consensus 30 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPVal 85 (288)
T 3q94_A 30 NLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAI 85 (288)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEE
Confidence 337889999999999999999876543222 11 234566677778 88899876
No 272
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=30.74 E-value=70 Score=24.04 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=9.9
Q ss_pred cCCCcEEEEcCCC
Q 031355 146 HAHCTVMIVKRPK 158 (161)
Q Consensus 146 ~~~~pvlvv~~~~ 158 (161)
+..+||++++...
T Consensus 137 ~~~ipV~~I~GNH 149 (431)
T 3t1i_A 137 NISIPVFSIHGNH 149 (431)
T ss_dssp CBCSCEEECCCSS
T ss_pred cCCCcEEEEccCC
Confidence 4689999997653
No 273
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=30.65 E-value=80 Score=18.15 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=24.9
Q ss_pred HHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 110 CEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 110 ~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
.+..++..+|+|++...-... .+ -...+.+-.. ..+|++++-..
T Consensus 39 ~~~~~~~~~dlii~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 39 VQRVETLKPDIVIIDVDIPGV-NG---IQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHHCCSEEEEETTCSSS-CH---HHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEecCCCCC-Ch---HHHHHHHHhcCCCCeEEEEeCC
Confidence 344556689999998764321 11 1233444333 35788887544
No 274
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=30.50 E-value=44 Score=23.99 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=31.2
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCC-C-cceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGY-G-AIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~-~-~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.+..+.++..+ ++|+||+|-.+. + -..-+++..+.+. +..+ |++.|.+
T Consensus 172 ~a~p~vl~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-l~~s--~kV~v~n 221 (311)
T 3c3d_A 172 SISPKVLEAFE--KEENILIGPSNPITSIGPIISLPGMREL-LKKK--KVVAVSP 221 (311)
T ss_dssp CCCHHHHHHHH--HCCEEEECSSCTTTTSHHHHHSTTHHHH-HHTS--EEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHHhhhcCchhHHHH-HHcC--CEEEEcc
Confidence 45668888888 899999996542 2 2333445556665 4444 7776654
No 275
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=30.43 E-value=1.1e+02 Score=19.50 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=23.2
Q ss_pred HHHHHhhhcCCccEEEEEEcCChHhHHH----HHHHhcCCCEEEEec
Q 031355 83 EAKEICSSKSVHDFVVEVVEGDARNILC----EAVEKHHASILVVGS 125 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~----~~a~~~~~dliVlg~ 125 (161)
.+.+++.+.|.......+..++ .+.|. ......++|+||...
T Consensus 44 ~L~~~L~~~G~~v~~~~iV~Dd-~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 44 IIKQLLIENGHKIIGYSLVPDD-KIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHHHTTCEEEEEEEECSC-HHHHHHHHHHHHTCTTCCEEEEES
T ss_pred HHHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEecC
Confidence 4556666667663444444443 33333 333345789999853
No 276
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=30.32 E-value=1.5e+02 Score=21.26 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=30.7
Q ss_pred cCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 102 EGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 102 ~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
..+.. +.++.+++..+|++++...-.. ..+ -...+.+....++||+++-.
T Consensus 35 a~~~~-eAl~~l~~~~pDlVllDi~mp~-~dG---lell~~l~~~~p~pVIvlS~ 84 (349)
T 1a2o_A 35 APDPL-VARDLIKKFNPDVLTLDVEMPR-MDG---LDFLEKLMRLRPMPVVMVSS 84 (349)
T ss_dssp ESSHH-HHHHHHHHHCCSEEEEECCCSS-SCH---HHHHHHHHHSSCCCEEEEEC
T ss_pred eCCHH-HHHHHHhccCCCEEEEECCCCC-CCH---HHHHHHHHhcCCCcEEEEEC
Confidence 33443 4445556678999999865332 111 13556666666799988854
No 277
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=30.24 E-value=1.4e+02 Score=20.87 Aligned_cols=52 Identities=8% Similarity=-0.015 Sum_probs=32.5
Q ss_pred ChHhH--HHHHHHhcCCCEEEEecCCCCc-ceeeeccchHHHHhhcCCCcEEEEc
Q 031355 104 DARNI--LCEAVEKHHASILVVGSHGYGA-IKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 104 ~~~~~--I~~~a~~~~~dliVlg~~~~~~-~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+..+. +.+.|++.++|-+++...-... ...--+-..-+.|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYN 130 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 44444 4677899999999888764433 2111111233457778899999864
No 278
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=30.22 E-value=90 Score=18.57 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=27.3
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
.+...+..++..+|+||+...-... .+ -...+.+-.. ..+||+++-..
T Consensus 40 ~~~a~~~l~~~~~dlii~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls~~ 88 (153)
T 3cz5_A 40 AGEAYRLYRETTPDIVVMDLTLPGP-GG---IEATRHIRQWDGAARILIFTMH 88 (153)
T ss_dssp HHHHHHHHHTTCCSEEEECSCCSSS-CH---HHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCC-CH---HHHHHHHHHhCCCCeEEEEECC
Confidence 3444566667789999998653321 11 1233444433 45788887543
No 279
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=30.20 E-value=83 Score=18.20 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=27.3
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
+..++..++..+|+|++...-.+...+. ...+.+-....+||+++-..
T Consensus 44 ~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 4444555667899999986543111111 23333433357898888543
No 280
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=30.09 E-value=77 Score=21.16 Aligned_cols=48 Identities=13% Similarity=-0.026 Sum_probs=28.9
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
.+.++.+.+.++|.|++-...+.+...-+--....++....++||+..
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~ 199 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIAS 199 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEE
Confidence 455566777789987765543332211122345667777778998864
No 281
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=30.03 E-value=1.8e+02 Score=21.89 Aligned_cols=37 Identities=14% Similarity=0.313 Sum_probs=26.6
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
.+.++++|++++.-.|.-++.++.+ . | .++..+++.-
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke----~-G----~eViavt~d~ 48 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCE----K-G----FDVIAYVANV 48 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHH----T-T----CEEEEEEEES
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHH----C-C----CeEEEEEEEc
Confidence 3567899999999888888777643 2 4 4888888743
No 282
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=29.57 E-value=72 Score=21.36 Aligned_cols=48 Identities=8% Similarity=-0.050 Sum_probs=27.0
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
.++.+.+.+.++|.|++-...+.+...-+.-....++....++||+..
T Consensus 149 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~ 196 (244)
T 1vzw_A 149 YETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVAS 196 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEE
Confidence 445566677789977765433322111122346677777788998874
No 283
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=29.55 E-value=40 Score=24.58 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=8.0
Q ss_pred EEEEEEecCCC
Q 031355 41 KLVIVHARPSP 51 (161)
Q Consensus 41 ~l~~l~v~~~~ 51 (161)
.+.++|+.+.-
T Consensus 20 ~mrilhiSD~H 30 (386)
T 3av0_A 20 HMMFVHIADNH 30 (386)
T ss_dssp CCEEEEECCCC
T ss_pred CeEEEEEccCC
Confidence 57788887764
No 284
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=29.27 E-value=1.4e+02 Score=20.61 Aligned_cols=50 Identities=6% Similarity=0.086 Sum_probs=32.0
Q ss_pred hHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 105 ARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
..+.|.+..++.++|+|+.-.....-......+..+....+..++|+++.
T Consensus 136 l~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 136 VADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 34557778899999999985433333333444555666666667776655
No 285
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=29.03 E-value=87 Score=18.04 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=26.7
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
.+.++...+..+|++++...-... .+ -.+...+-.. ..+|++++-..
T Consensus 37 ~~a~~~~~~~~~dlvl~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 37 EEALKKAETEKPDLIVLDVMLPKL-DG---IEVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSSS-CH---HHHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHhhcCCCEEEEecCCCCC-CH---HHHHHHHHcCCCCCCEEEEECC
Confidence 344455666789999998653321 11 1233444333 46888887543
No 286
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=28.96 E-value=1.2e+02 Score=20.22 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=29.1
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
..+.++.+.+.+++.|++....+.+...-+--....++...+++||+.-
T Consensus 153 ~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~ 201 (253)
T 1thf_D 153 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 201 (253)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEE
Confidence 3455666777789988775433322111122245566777778998875
No 287
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=28.94 E-value=61 Score=22.20 Aligned_cols=47 Identities=4% Similarity=-0.034 Sum_probs=25.4
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.++++...+.++|+|.+|-...-..... -...+.+= ...+|+++.+-
T Consensus 23 ~~~~~~l~~~GaD~ielG~S~Gvt~~~~--~~~v~~ir-~~~~Pivlm~y 69 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGSDGVTEDNV--LRMMSKVR-RFLVPCVLEVS 69 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC----CHHHH--HHHHHHHT-TSSSCEEEECS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHH--HHHHHHhh-CcCCCEEEecC
Confidence 4567777788999999986321111111 12233332 25778887653
No 288
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=28.83 E-value=1.5e+02 Score=20.65 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=32.7
Q ss_pred ChHhH--HHHHHHhcCCCEEEEecCCCCc-ceeeeccchHHHHhhcCCCcEEEEc
Q 031355 104 DARNI--LCEAVEKHHASILVVGSHGYGA-IKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 104 ~~~~~--I~~~a~~~~~dliVlg~~~~~~-~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+..+. +.+.|++.++|-+++...-... ...--+-..-+.|...++.||++..
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 129 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYN 129 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44444 4677899999999998765433 2111111233457778899999864
No 289
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=28.82 E-value=1.1e+02 Score=19.23 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHHHHhhhcCCccEEEEEEcCCh---HhHHHHHHHhcCCCEEEEe
Q 031355 83 EAKEICSSKSVHDFVVEVVEGDA---RNILCEAVEKHHASILVVG 124 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~g~~---~~~I~~~a~~~~~dliVlg 124 (161)
.+.+++.+.|.......+..+++ .+.|.+.+++.++|+||..
T Consensus 25 ~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 25 AIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 34556666676534444444432 2333333333379999884
No 290
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=28.72 E-value=89 Score=18.09 Aligned_cols=44 Identities=7% Similarity=-0.004 Sum_probs=24.0
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcC-CCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHA-HCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~-~~pvlvv~~~ 157 (161)
.++.+...++..+|+++ ..+.+++ .+.+.+-... .+||+++-..
T Consensus 51 ~~~al~~l~~~~~dlvi--~~~~~g~------~~~~~l~~~~~~~~ii~ls~~ 95 (137)
T 2pln_A 51 LEDGEYLMDIRNYDLVM--VSDKNAL------SFVSRIKEKHSSIVVLVSSDN 95 (137)
T ss_dssp HHHHHHHHHHSCCSEEE--ECSTTHH------HHHHHHHHHSTTSEEEEEESS
T ss_pred HHHHHHHHHcCCCCEEE--EcCccHH------HHHHHHHhcCCCccEEEEeCC
Confidence 34444566677899999 2222221 2333333334 6888887543
No 291
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=28.51 E-value=1.5e+02 Score=20.77 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=38.2
Q ss_pred EEEEEEcCChHh--HHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 96 FVVEVVEGDARN--ILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 96 ~~~~v~~g~~~~--~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+-..+...+..+ ++.+.|++.++|-+++...-......--+-..-+.|...++.||++..-
T Consensus 76 viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (300)
T 3eb2_A 76 VVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTN 138 (300)
T ss_dssp BEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 444554444444 4557799999999999876433222111123446678888999999854
No 292
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=28.34 E-value=81 Score=24.09 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=17.3
Q ss_pred HhHHHHHHHhcCCCEEEEecC
Q 031355 106 RNILCEAVEKHHASILVVGSH 126 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~ 126 (161)
.+.+++.+.+.++|+||++.-
T Consensus 104 l~~lv~~~~~~~~D~VliaGD 124 (472)
T 4fbk_A 104 FNEILEIARERDVDMILLGGD 124 (472)
T ss_dssp HHHHHHHHHHTTCSEEEECSC
T ss_pred HHHHHHHHHhcCCCEEEEcCc
Confidence 367888999999999999753
No 293
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=28.28 E-value=91 Score=22.72 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHhcCCCEEEEecCC--CCcceeeeccchHHHH-hhcCCCcEEEEcC
Q 031355 111 EAVEKHHASILVVGSHG--YGAIKRAVLGSVSDYC-AHHAHCTVMIVKR 156 (161)
Q Consensus 111 ~~a~~~~~dliVlg~~~--~~~~~~~~~gs~~~~l-l~~~~~pvlvv~~ 156 (161)
...++.++|.+++|+.+ .++ ----.|...-.+ .++.++|++|+-+
T Consensus 219 ~~M~~~~Vd~VivGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 219 IVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HHHHTTCCSEEEECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHhhcCCCCEEEECccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCc
Confidence 33455679999999986 333 212246554444 4467899999844
No 294
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=28.24 E-value=62 Score=24.22 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=9.3
Q ss_pred cCCCcEEEEcCC
Q 031355 146 HAHCTVMIVKRP 157 (161)
Q Consensus 146 ~~~~pvlvv~~~ 157 (161)
+..+||++++..
T Consensus 118 ~~gIpV~~I~GN 129 (417)
T 4fbw_A 118 NVAIPVFSIHGN 129 (417)
T ss_dssp CBSSCEEECCCG
T ss_pred cCCCeEEEEecC
Confidence 458999999754
No 295
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=27.90 E-value=95 Score=20.74 Aligned_cols=27 Identities=4% Similarity=-0.175 Sum_probs=21.7
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhh
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFF 31 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~ 31 (161)
..++|++++.++....++++..-.+.+
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~ 44 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTE 44 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHT
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhc
Confidence 357899999999988888887777754
No 296
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=27.90 E-value=68 Score=21.51 Aligned_cols=28 Identities=7% Similarity=-0.083 Sum_probs=15.7
Q ss_pred CceeEEEEecCChh--HHHHHHHHHHHhhc
Q 031355 5 ETQTMVVGIDDSEQ--STYALQWTLDHFFA 32 (161)
Q Consensus 5 ~~~~ilv~~d~s~~--s~~al~~a~~la~~ 32 (161)
.++.|+|.-.++.. +.-++..+..++++
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~ 32 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQ 32 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHC
Confidence 35677777766554 44444445555543
No 297
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=27.80 E-value=1.1e+02 Score=21.79 Aligned_cols=41 Identities=7% Similarity=0.073 Sum_probs=25.8
Q ss_pred CChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEE
Q 031355 103 GDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVM 152 (161)
Q Consensus 103 g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvl 152 (161)
|.....-.+.....++|.||+-....+ ..+.+...+.+||+
T Consensus 78 gEsl~DTarvLs~~~~D~iviR~~~~~---------~~~~la~~~~vPVI 118 (304)
T 3r7f_A 78 GETLYDTIRTLESIGVDVCVIRHSEDE---------YYEELVSQVNIPIL 118 (304)
T ss_dssp SSCHHHHHHHHHHHTCCEEEEECSSTT---------CHHHHHHHCSSCEE
T ss_pred CCCHHHHHHHHHHhcCCEEEEecCChh---------HHHHHHHhCCCCEE
Confidence 333333344445556899999766433 34667788899976
No 298
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=27.44 E-value=1.5e+02 Score=21.50 Aligned_cols=64 Identities=8% Similarity=0.043 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 79 RVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+.+..+.+.+.+.|.. +... ..+.....++.....++|-||+... ....-..+...++||+++-
T Consensus 41 ~l~~gi~~~a~~~g~~-~~i~--~~~~~~~~i~~l~~~~vDGiIi~~~----------~~~~~~~l~~~~iPvV~i~ 104 (412)
T 4fe7_A 41 QVVEGVGEYLQASQSE-WDIF--IEEDFRARIDKIKDWLGDGVIADFD----------DKQIEQALADVDVPIVGVG 104 (412)
T ss_dssp HHHHHHHHHHHHHTCC-EEEE--ECC-CC--------CCCSEEEEETT----------CHHHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHHHhcCCC-eEEE--ecCCccchhhhHhcCCCCEEEEecC----------ChHHHHHHhhCCCCEEEec
Confidence 4445555555555543 3332 2322344466667778999998311 1122345566789999884
No 299
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=27.37 E-value=1.8e+02 Score=21.23 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... + + -+|+++|=....... ..-+.+.+++...+++.+.+
T Consensus 163 ~~~eRiar~AFe~A~~r-~-r--kkVt~v~KaNvlk~s----------------------dglf~~~~~eva~eypdI~~ 216 (354)
T 3blx_B 163 DASERVIRYAFEYARAI-G-R--PRVIVVHKSTIQRLA----------------------DGLFVNVAKELSKEYPDLTL 216 (354)
T ss_dssp HHHHHHHHHHHHHHHHT-T-C--SEEEEEESCTTTCHH----------------------HHHHHHHHHHHGGGCTTSEE
T ss_pred HHHHHHHHHHHHHHHhc-C-C--CeEEEEECCcchHhH----------------------HHHHHHHHHHHHHHCCCceE
Confidence 46788999999999975 3 1 378888865543211 01233444555566666544
Q ss_pred EEEEEcCChHhHHHHHHHhcCCC--EEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHAS--ILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~d--liVlg 124 (161)
+... -++..-.++..=. .+| .||..
T Consensus 217 ~~~~-vD~~~m~lv~~P~--~FD~~Vivt~ 243 (354)
T 3blx_B 217 ETEL-IDNSVLKVVTNPS--AYTDAVSVCP 243 (354)
T ss_dssp EEEE-HHHHHHHHHHCGG--GGTTEEEEEC
T ss_pred EEEE-HHHHHHHHhhChh--hCCceEEEec
Confidence 4443 2334444444433 677 77764
No 300
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=27.17 E-value=98 Score=20.75 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhcCCccEEEEEEc-CChHhHHHHHHHhcCCCEEEEecCCC
Q 031355 80 VVEEAKEICSSKSVHDFVVEVVE-GDARNILCEAVEKHHASILVVGSHGY 128 (161)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliVlg~~~~ 128 (161)
+++.+.+.+++.|.. ++..-+. +.-.+...+..+ .+|.||++.+-.
T Consensus 48 L~~~~~~~l~~~g~e-v~~~dL~~~~Dv~~~~~~l~--~aD~iv~~~P~y 94 (218)
T 3rpe_A 48 LTNVAADFLRESGHQ-VKITTVDQGYDIESEIENYL--WADTIIYQMPAW 94 (218)
T ss_dssp HHHHHHHHHHHTTCC-EEEEEGGGCCCHHHHHHHHH--HCSEEEEEEECB
T ss_pred HHHHHHHHHhhCCCE-EEEEECCCccCHHHHHHHHH--hCCEEEEECChH
Confidence 334444444444433 4443333 333455556666 899999998753
No 301
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=27.14 E-value=1.2e+02 Score=18.94 Aligned_cols=47 Identities=6% Similarity=-0.033 Sum_probs=27.1
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh-cCCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH-HAHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~-~~~~pvlvv~~~ 157 (161)
.+.++..++..+|+|++...-.. ..+ -.+.+.+-. ...+||+++-..
T Consensus 41 ~~al~~~~~~~~dlvl~D~~lp~-~~g---~~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 41 DEALKLAGAEKFEFITVXLHLGN-DSG---LSLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHHHTTSCCSEEEECSEETT-EES---HHHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHhhCCCCEEEEeccCCC-ccH---HHHHHHHHhcCCCCCEEEEeCC
Confidence 34455667788999999865322 111 123344433 346888888654
No 302
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.05 E-value=88 Score=20.07 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=29.2
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
..+.+++.++.|..+...++ +++.|+.. | +++.++.-.+
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~-g----~~vI~IT~~~ 150 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQ-AIQAAHDR-E----MLVVALTGRD 150 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHT-T----CEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHC-C----CEEEEEECCC
Confidence 45679999999988888876 55777776 7 7887775543
No 303
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=27.03 E-value=61 Score=21.76 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=26.1
Q ss_pred CCCEEEEecCCCCcceeeecc-chHHHHhhcCCCcEEEEc
Q 031355 117 HASILVVGSHGYGAIKRAVLG-SVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 117 ~~dliVlg~~~~~~~~~~~~g-s~~~~ll~~~~~pvlvv~ 155 (161)
+.|.|+++.. ++.+.++-+| ++++.|....++|++-|.
T Consensus 66 dld~Iav~~G-PGsfTGlRiG~~~Ak~La~~~~iPl~gVs 104 (218)
T 2a6a_A 66 DLDVVGVGIG-PGGLTGLRVGIATVVGLVSPYDIPVAPLN 104 (218)
T ss_dssp GCSEEEEECC-SSCHHHHHHHHHHHHHHHGGGTCCEEEEC
T ss_pred HCCEEEEEcC-CCchHhHHHHHHHHHHHHHHcCCCEEEeC
Confidence 6888888854 4555555555 566667777889988764
No 304
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=26.95 E-value=1.4e+02 Score=19.82 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=27.8
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.+++.+..++.++|++|+...++- +...++...+..++=+++.
T Consensus 68 ~~~~~~~l~~~~~Dliv~agy~~i---------l~~~~l~~~~~~~iNiHpS 110 (212)
T 1jkx_A 68 DRELIHEIDMYAPDVVVLAGFMRI---------LSPAFVSHYAGRLLNIHPS 110 (212)
T ss_dssp HHHHHHHHGGGCCSEEEESSCCSC---------CCHHHHHHTTTSEEEEESS
T ss_pred cHHHHHHHHhcCCCEEEEeChhhh---------CCHHHHhhccCCEEEEccC
Confidence 357888999999999999765421 2234555555555555543
No 305
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=26.94 E-value=1e+02 Score=18.24 Aligned_cols=38 Identities=5% Similarity=0.052 Sum_probs=21.6
Q ss_pred cCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcCC
Q 031355 116 HHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKRP 157 (161)
Q Consensus 116 ~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~~ 157 (161)
..+|+|++...-.+ ..+ -.+.+.+-.. ..+||+++-..
T Consensus 60 ~~~dlillD~~lp~-~~g---~~l~~~l~~~~~~~~~piiils~~ 100 (149)
T 1i3c_A 60 PRPNLILLDLNLPK-KDG---REVLAEIKQNPDLKRIPVVVLTTS 100 (149)
T ss_dssp CCCSEEEECSCCSS-SCH---HHHHHHHHHCTTTTTSCEEEEESC
T ss_pred CCCCEEEEeCCCCC-CcH---HHHHHHHHhCcCcCCCeEEEEECC
Confidence 57999999865332 111 1234444333 35788888543
No 306
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=26.72 E-value=89 Score=17.42 Aligned_cols=50 Identities=4% Similarity=-0.015 Sum_probs=27.6
Q ss_pred CChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 103 GDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 103 g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.+..+.+ ....+..+|++++...-.+. .+ -...+.+-....+|++++-..
T Consensus 32 ~~~~~~~-~~~~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~ii~~s~~ 81 (121)
T 1zh2_A 32 ETLQRGL-LEAATRKPDLIILDLGLPDG-DG---IEFIRDLRQWSAVPVIVLSAR 81 (121)
T ss_dssp SSHHHHH-HHHHHHCCSEEEEESEETTE-EH---HHHHHHHHTTCCCCEEEEESC
T ss_pred CCHHHHH-HHHhcCCCCEEEEeCCCCCC-cH---HHHHHHHHhCCCCcEEEEECC
Confidence 3444444 44455689999998653221 11 123444444456888887543
No 307
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=26.65 E-value=1.8e+02 Score=21.03 Aligned_cols=22 Identities=5% Similarity=-0.058 Sum_probs=15.1
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYG 129 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~ 129 (161)
...+.+... ++|.||+|+.-..
T Consensus 298 ~~~~~~~l~--~~D~iiigsP~y~ 319 (414)
T 2q9u_A 298 ITKVALHTY--DSGAVAFASPTLN 319 (414)
T ss_dssp HHHHHHHHH--TCSEEEEECCCBT
T ss_pred HHHHHHHHH--hCCEEEEEcCccC
Confidence 344555555 8999999987543
No 308
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=26.43 E-value=70 Score=23.06 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=28.4
Q ss_pred ceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEE
Q 031355 6 TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIV 45 (161)
Q Consensus 6 ~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l 45 (161)
.++|+++.|++....+|...++...... | ..+.++
T Consensus 195 ~~~Vil~~D~D~AG~~Aa~r~~~~l~~~-g----~~v~v~ 229 (329)
T 4edg_A 195 TSNITLMFDGDFAGSEATLKTGQHLLQQ-G----LNVFVI 229 (329)
T ss_dssp CSEEEECCCSSHHHHHHHHHHHHHHHHT-T----CEEEEC
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHhc-C----CeEEEE
Confidence 3689999999999999999888888765 6 566654
No 309
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.19 E-value=1e+02 Score=17.94 Aligned_cols=51 Identities=10% Similarity=0.013 Sum_probs=27.0
Q ss_pred CChHhHHHHHHH-hcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 103 GDARNILCEAVE-KHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 103 g~~~~~I~~~a~-~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
.+..+.+..... ...+|+|++...-... .+ -.+.+.+-.. ..+||+++-..
T Consensus 34 ~~~~~a~~~~~~~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 34 SSSTEGLRIFTENCNSIDVVITDMKMPKL-SG---MDILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp SSHHHHHHHHHHTTTTCCEEEEESCCSSS-CH---HHHHHHHHHHCTTCEEEEEECT
T ss_pred CCHHHHHHHHHhCCCCCCEEEEeCCCCCC-cH---HHHHHHHHHhCCCCeEEEEECC
Confidence 344444433332 5689999998763321 11 1233344333 35888887543
No 310
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.12 E-value=1e+02 Score=17.95 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=26.4
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~ 156 (161)
..+.++..++..+|++++...-.+. .+ -.+.+.+-.. .++||+++-.
T Consensus 37 ~~~a~~~l~~~~~dlvllD~~l~~~-~g---~~l~~~l~~~~~~~~ii~ls~ 84 (137)
T 3cfy_A 37 GRDAIQFIERSKPQLIILDLKLPDM-SG---EDVLDWINQNDIPTSVIIATA 84 (137)
T ss_dssp HHHHHHHHHHHCCSEEEECSBCSSS-BH---HHHHHHHHHTTCCCEEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCC-CH---HHHHHHHHhcCCCCCEEEEEe
Confidence 3444455666789999998653321 11 1233444332 4678888754
No 311
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=26.07 E-value=1.3e+02 Score=19.23 Aligned_cols=38 Identities=3% Similarity=-0.052 Sum_probs=22.2
Q ss_pred cCCCEEEEecCCCCcceeeeccchHHHHhh-----cCCCcEEEEcCC
Q 031355 116 HHASILVVGSHGYGAIKRAVLGSVSDYCAH-----HAHCTVMIVKRP 157 (161)
Q Consensus 116 ~~~dliVlg~~~~~~~~~~~~gs~~~~ll~-----~~~~pvlvv~~~ 157 (161)
..+|+|++...-.. ..+ -.+.+.|-. ...+||+++-..
T Consensus 118 ~~~dlillD~~lp~-~~G---~el~~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 118 LPFDYIFMDCQMPE-MDG---YEATREIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp CSCSEEEEESCCSS-SCH---HHHHHHHHHHHHTTTCCCCEEEEESS
T ss_pred CCCCEEEEcCCCCC-CCH---HHHHHHHHhhhhhcCCCCcEEEEECC
Confidence 38999999865322 111 123344433 267899998654
No 312
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=26.03 E-value=32 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=19.3
Q ss_pred CChHhHHHHHHH-hcCCCEEEEecCCCC
Q 031355 103 GDARNILCEAVE-KHHASILVVGSHGYG 129 (161)
Q Consensus 103 g~~~~~I~~~a~-~~~~dliVlg~~~~~ 129 (161)
|+-.+.+++.++ +.++.+|.+-..+..
T Consensus 113 GdDi~~v~~~~~~~~~ipVi~v~~~Gf~ 140 (460)
T 2xdq_A 113 KMDLEGLAPKLEAEIGIPIVVARANGLD 140 (460)
T ss_dssp TCCHHHHHHHHHHHHSSCEEEEECCTTT
T ss_pred hhCHHHHHHHHhhccCCcEEEEecCCcc
Confidence 666677777665 668888888877644
No 313
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=25.25 E-value=1.1e+02 Score=22.59 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=27.6
Q ss_pred eeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEE
Q 031355 7 QTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIV 45 (161)
Q Consensus 7 ~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l 45 (161)
++|+++.|++....+|...++...... | ..+.++
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~-g----~~~~v~ 321 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSA-G----VEVYPV 321 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHT-T----CEEEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhC-C----CeEEEE
Confidence 689999999999999988888877764 5 566655
No 314
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=25.23 E-value=1.1e+02 Score=17.83 Aligned_cols=46 Identities=7% Similarity=0.013 Sum_probs=26.2
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKR 156 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~ 156 (161)
.+.++...+..+|++++...-... .+ -.+.+.+-.. ..+||+++-.
T Consensus 37 ~~al~~l~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 37 EECLEALNATPPDLVLLDIMMEPM-DG---WETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSS-CH---HHHHHHHHHSTTTTTSCEEEEES
T ss_pred HHHHHHHhccCCCEEEEeCCCCCC-CH---HHHHHHHHcCcccCCCCEEEEEC
Confidence 344455667789999998653321 11 1233444332 3688988754
No 315
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=25.13 E-value=1e+02 Score=17.69 Aligned_cols=51 Identities=6% Similarity=-0.024 Sum_probs=27.5
Q ss_pred CChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc--CCCcEEEEcCC
Q 031355 103 GDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH--AHCTVMIVKRP 157 (161)
Q Consensus 103 g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~--~~~pvlvv~~~ 157 (161)
.+..+.+........+|+|++...-... .+ -.+.+.+-.. ..+||+++-..
T Consensus 38 ~~~~~a~~~~~~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 38 DGAEEARLYLHYQKRIGLMITDLRMQPE-SG---LDLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp SSHHHHHHHHHHCTTEEEEEECSCCSSS-CH---HHHHHHHHTSTTTTCEEEEEESS
T ss_pred CCHHHHHHHHHhCCCCcEEEEeccCCCC-CH---HHHHHHHHhcCCCCCCEEEEeCC
Confidence 4455554444444449999998653321 11 1234444443 45788887544
No 316
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=25.05 E-value=48 Score=24.29 Aligned_cols=55 Identities=25% Similarity=0.254 Sum_probs=36.5
Q ss_pred EEcCChHhHHHHHHHhcCCCEEEEecCCCCc------cee------ee-----ccchHHHHhhcCCCcEEEE
Q 031355 100 VVEGDARNILCEAVEKHHASILVVGSHGYGA------IKR------AV-----LGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 100 v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~------~~~------~~-----~gs~~~~ll~~~~~pvlvv 154 (161)
+..-....++++.|++.+..+|+-.+.+... +.. .+ +......+..+.++||.+=
T Consensus 36 v~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~A~~~~VPVaLH 107 (358)
T 1dos_A 36 CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILH 107 (358)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHHHHHHCCCCEEEE
Confidence 3334789999999999999999987765211 111 01 2344556667788998653
No 317
>2x9q_A Cyclodipeptide synthetase; ligase; 2.02A {Mycobacterium tuberculosis}
Probab=24.81 E-value=79 Score=22.33 Aligned_cols=40 Identities=18% Similarity=0.017 Sum_probs=30.4
Q ss_pred ceeEEEEecC--ChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 6 TQTMVVGIDD--SEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 6 ~~~ilv~~d~--s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
.+++++.|.. |-.+..-+...++++...|. ++.+++.-..
T Consensus 80 ~~HaliGISPfNSyFS~dri~~Li~Wa~~~F~-----~VdVl~~d~~ 121 (289)
T 2x9q_A 80 GDHAVIGVSPGNSYFSRQRLRDLGLWGLTNFD-----RVDFVYTDVH 121 (289)
T ss_dssp TCEEEEEECTTCTTSCHHHHHHHHHHHHHHCS-----EEEEEECCSS
T ss_pred CCeEEEEECCCCCccCHHHHHHHHHHHHhcCC-----eeEEEecChH
Confidence 4689999983 45688888888888887777 9999985433
No 318
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=24.75 E-value=49 Score=24.50 Aligned_cols=54 Identities=2% Similarity=-0.122 Sum_probs=35.2
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
.-.+.+.+.+++.++|-||.-....=.........+.+.+.+..++|+|.+--.
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D 374 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGD 374 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 457788889999999999976554322211111223345557789999998544
No 319
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=24.65 E-value=73 Score=21.74 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=14.4
Q ss_pred HhcCCCEEEEecCCCCcce
Q 031355 114 EKHHASILVVGSHGYGAIK 132 (161)
Q Consensus 114 ~~~~~dliVlg~~~~~~~~ 132 (161)
++.++|.||+|.-+...+.
T Consensus 171 ~~~gad~IVLGCTh~p~l~ 189 (245)
T 3qvl_A 171 KEDGSGAIVLGSGGMATLA 189 (245)
T ss_dssp HHSCCSEEEECCGGGGGGH
T ss_pred HhcCCCEEEECCCChHHHH
Confidence 4578999999988765443
No 320
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=24.42 E-value=33 Score=23.98 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhhc-CCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCC
Q 031355 73 FKKIAARVVEEAKEICSSK-SVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~ 127 (161)
..+..++.++++.+.+.+. + .+....+.|+.+.+=. -...++|++|+....
T Consensus 18 ~~q~Vq~eL~~ive~L~~~~~--~i~~I~LFGS~ARG~~--~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 18 YFQGVQHTIARWVDRLREEYA--DAVAILLKGSYARGDA--ATWSDIDFDVLVSTQ 69 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--TEEEEEEEHHHHHTCC--CTTCCEEEEEEESST
T ss_pred ChHHHHHHHHHHHHHHHHhcC--CceEEEEEeceeCCCC--CCCCceEEEEEecCC
Confidence 3344444444444444333 4 3667778887665543 344599999997654
No 321
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=24.17 E-value=1.1e+02 Score=17.68 Aligned_cols=35 Identities=6% Similarity=0.049 Sum_probs=18.7
Q ss_pred cCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 116 HHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 116 ~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.++|+|+.+..=...+. -.+......++||+++++
T Consensus 50 ~~~D~Ii~t~~l~~~~~------~~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 50 DRFDVVLLAPQSRFNKK------RLEEITKPKGIPIEIINT 84 (109)
T ss_dssp TTCSEEEECSCCSSHHH------HHHHHHHHHTCCEEECCH
T ss_pred CCCCEEEECCccHHHHH------HHHHHhcccCCCEEEECh
Confidence 38999999865322111 112222334677777653
No 322
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=24.10 E-value=1.4e+02 Score=19.74 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=29.0
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcE
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTV 151 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pv 151 (161)
...|++.|+++++.+|+++..++.+. | .+-.++...+.+-
T Consensus 138 ~~~Lld~A~~~naqvvll~~~~RqG~-----G-nAl~vl~~agv~t 177 (189)
T 2l8b_A 138 TLTLLDGAARHNVQVLITDSGQRTGT-----G-SALMAMKDAGVNT 177 (189)
T ss_dssp HHHHHHHHHHTTCCEEEEESSTTTCS-----H-HHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcCCEEEEeCCcccccC-----C-CHHHHHHhCCCce
Confidence 46688999999999999998765543 3 4455776665543
No 323
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=23.99 E-value=2e+02 Score=20.57 Aligned_cols=39 Identities=26% Similarity=0.500 Sum_probs=25.4
Q ss_pred CCCEEEEecCCC---CcceeeeccchHH-HHhhcCCCcEEEEcC
Q 031355 117 HASILVVGSHGY---GAIKRAVLGSVSD-YCAHHAHCTVMIVKR 156 (161)
Q Consensus 117 ~~dliVlg~~~~---~~~~~~~~gs~~~-~ll~~~~~pvlvv~~ 156 (161)
++|.+++|..+- +..- --.|+..- -+.++.++|++|+-+
T Consensus 189 ~vd~VivGAd~i~~nG~v~-nkiGT~~iAl~Ak~~~vP~~V~a~ 231 (315)
T 3ecs_A 189 KADLVIVGAEGVVENGGII-NKIGTNQMAVCAKAQNKPFYVVAE 231 (315)
T ss_dssp GCSEEEEECSEECTTSCEE-EETTHHHHHHHHHHTTCCEEEECC
T ss_pred hCCEEEECceEEecCCCee-ehhhhHHHHHHHHHhCCCEEEEec
Confidence 899999999852 2222 22454333 355567999999844
No 324
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=23.41 E-value=38 Score=19.35 Aligned_cols=67 Identities=19% Similarity=0.115 Sum_probs=34.8
Q ss_pred HHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+.+...++.++ +......|+.+.+= .-...++|++|+.....+... +......+-...++||=++..
T Consensus 14 ~~i~~l~~~~~---v~~v~LFGS~arG~--~~~~SDiDl~V~~~~~~~~~~---~~~l~~~l~~~l~~~vDlv~~ 80 (98)
T 1wot_A 14 EAVLSLCARHG---AVRVRVFGSVARGE--AREDSDLDLLVAFEEGRTLLD---HARLKLALEGLLGVRVDIVSE 80 (98)
T ss_dssp HHHHHHHHHHT---CSSCEECSHHHHTC--CCTTCCCEEEECCCSSCCHHH---HHHHHHHHHHHSCSCCEEEET
T ss_pred HHHHHHHHHcC---CcEEEEEccccCCC--CCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHHcCCCEEEEEh
Confidence 33444444444 23446788877652 223469999998765333221 223444444444566655543
No 325
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=23.03 E-value=1.6e+02 Score=19.13 Aligned_cols=42 Identities=17% Similarity=0.007 Sum_probs=21.9
Q ss_pred HHHHHHhhhcCCccEEEEEEcCChHhHHHHH---HHhcCCCEEEEe
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDARNILCEA---VEKHHASILVVG 124 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~---a~~~~~dliVlg 124 (161)
..+.+++++.|.......+..++ .+.|.+. +...++|+||..
T Consensus 52 ~~L~~~L~~~G~~v~~~~iv~Dd-~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 52 PLVTELLTEAGFVVDGVVAVEAD-EVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHHHHTTEEEEEEEEECSC-HHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhCCCCEEEEC
Confidence 34455566667653444444443 3333332 222479999884
No 326
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=22.94 E-value=1.7e+02 Score=19.41 Aligned_cols=69 Identities=6% Similarity=0.101 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhcCCccEEEEEEcCCh--HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHH-HhhcCCCcEEEE
Q 031355 78 ARVVEEAKEICSSKSVHDFVVEVVEGDA--RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDY-CAHHAHCTVMIV 154 (161)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~-ll~~~~~pvlvv 154 (161)
.+.+..+.+.+.+.|.. +......++. ...+++.....++|-||+... ....-. .+...++||+++
T Consensus 24 ~~~~~gi~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~----------~~~~~~~~l~~~~iPvV~~ 92 (277)
T 3e61_A 24 TLIARGVEDVALAHGYQ-VLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF----------NENIIENTLTDHHIPFVFI 92 (277)
T ss_dssp HHHHHHHHHHHHHTTCC-EEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG----------GHHHHHHHHHHC-CCEEEG
T ss_pred HHHHHHHHHHHHHCCCE-EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC----------ChHHHHHHHHcCCCCEEEE
Confidence 34455556666666654 4444334443 345677777789999998651 111123 455668999887
Q ss_pred cCC
Q 031355 155 KRP 157 (161)
Q Consensus 155 ~~~ 157 (161)
-..
T Consensus 93 ~~~ 95 (277)
T 3e61_A 93 DRI 95 (277)
T ss_dssp GGC
T ss_pred ecc
Confidence 543
No 327
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=22.89 E-value=1.2e+02 Score=17.60 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=27.3
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh---cCCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH---HAHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~---~~~~pvlvv~~~ 157 (161)
.++.++...+..+|+|++...-.. ..+ -.+.+.+-. ...+|++++-..
T Consensus 37 ~~~al~~~~~~~~dlvl~D~~lp~-~~g---~~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 37 GEEALQQIYKNLPDALICDVLLPG-IDG---YTLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSS-SCH---HHHHHHHHHSGGGTTCCEEEEECT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCH---HHHHHHHHcCCCcCCccEEEEecC
Confidence 344455667789999999865332 111 123333432 236788887544
No 328
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.87 E-value=1.8e+02 Score=19.55 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhcCCccEEEEEEcCCh--HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 78 ARVVEEAKEICSSKSVHDFVVEVVEGDA--RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
.+.+..+.+.+.+.|.. +......+++ ...+++.....++|-||+..... ....-+.+...++||+++-
T Consensus 24 ~~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--------~~~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 24 AEVASGVESEARHKGYS-VLLANTAEDIVREREAVGQFFERRVDGLILAPSEG--------EHDYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--------CCHHHHHSSCTTSCEEEES
T ss_pred HHHHHHHHHHHHHCCCE-EEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--------ChHHHHHhhccCCCEEEEe
Confidence 34455566666666653 4443333444 34466777778999999865432 1112234556789999885
Q ss_pred CC
Q 031355 156 RP 157 (161)
Q Consensus 156 ~~ 157 (161)
..
T Consensus 95 ~~ 96 (291)
T 3egc_A 95 RE 96 (291)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 329
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.86 E-value=1.4e+02 Score=18.74 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=28.3
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
..+.+++.+..|..+...++ +++.|+.. | +++.++.-.+
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~-~~~~ak~~-g----~~vi~IT~~~ 116 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIH-TAAKAKSL-H----GIVAALTINP 116 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHT-T----CEEEEEESCT
T ss_pred CCCCEEEEEcCCCCcHHHHH-HHHHHHHC-C----CEEEEEECCC
Confidence 45679999999888877665 55677775 7 7887775543
No 330
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=22.85 E-value=1.5e+02 Score=19.88 Aligned_cols=52 Identities=8% Similarity=0.053 Sum_probs=29.1
Q ss_pred HHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccch
Q 031355 85 KEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSV 139 (161)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~ 139 (161)
.+.+++.|.. .-..+..+.+.+.+..+.. .+|+|.+.+...++-...|....
T Consensus 105 i~~i~~~G~k-~gval~p~t~~e~l~~~l~--~~D~Vl~msv~pGf~Gq~f~~~~ 156 (228)
T 3ovp_A 105 IKDIRENGMK-VGLAIKPGTSVEYLAPWAN--QIDMALVMTVEPGFGGQKFMEDM 156 (228)
T ss_dssp HHHHHHTTCE-EEEEECTTSCGGGTGGGGG--GCSEEEEESSCTTTCSCCCCGGG
T ss_pred HHHHHHcCCC-EEEEEcCCCCHHHHHHHhc--cCCeEEEeeecCCCCCcccCHHH
Confidence 3344444543 4444555677777776666 58888777654443333344444
No 331
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=22.84 E-value=76 Score=21.98 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=21.6
Q ss_pred EEEEEEcCChHhHHHHHHHhcCCCEEEE
Q 031355 96 FVVEVVEGDARNILCEAVEKHHASILVV 123 (161)
Q Consensus 96 ~~~~v~~g~~~~~I~~~a~~~~~dliVl 123 (161)
++.....=++..++++.|.+.++||||.
T Consensus 38 V~~I~~alD~t~~vi~eAi~~gadlIit 65 (267)
T 2fyw_A 38 IQRVMVALDIREETVAEAIEKGVDLIIV 65 (267)
T ss_dssp CSEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred cCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 3333334477899999999999999987
No 332
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=22.70 E-value=1.1e+02 Score=22.63 Aligned_cols=46 Identities=24% Similarity=0.228 Sum_probs=30.4
Q ss_pred HHHHhcCCCEEEEecCCCC--c--ceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 111 EAVEKHHASILVVGSHGYG--A--IKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 111 ~~a~~~~~dliVlg~~~~~--~--~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+++.+.++-+|++.+-++. + -...-+..+++.|-.....||-+++.
T Consensus 45 ~~ll~~gakvil~SHlGRP~kG~~~~~~SL~pva~~L~~lLg~~V~f~~d 94 (387)
T 1zmr_A 45 ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKD 94 (387)
T ss_dssp HHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHCCCEEEEEccCCCCCCCCcCCccCHHHHHHHHHHHhCCCCEECcc
Confidence 3444557776676655544 2 23355678888888888999988864
No 333
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=22.57 E-value=2e+02 Score=19.96 Aligned_cols=70 Identities=9% Similarity=0.064 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhcCCccEEEEEEcCChH--hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 79 RVVEEAKEICSSKSVHDFVVEVVEGDAR--NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
+.+..+.+.+.+.|.. +......+++. ...++.....++|-||+...... ......++...++||+++-.
T Consensus 80 ~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQ-LLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-------VDEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-------HHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-------hHHHHHHHHcCCCCEEEEcC
Confidence 4445556666666653 33333333443 33566677779999888643221 12234566677899888854
No 334
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=22.56 E-value=1.3e+02 Score=17.80 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=23.2
Q ss_pred HhcCCCEEEEecCCCCcceeeeccchHHHHhh---cCCCcEEEEcCC
Q 031355 114 EKHHASILVVGSHGYGAIKRAVLGSVSDYCAH---HAHCTVMIVKRP 157 (161)
Q Consensus 114 ~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~---~~~~pvlvv~~~ 157 (161)
.+..+|+|++...-... .+ -.+.+.+-. ...+||+++-..
T Consensus 56 ~~~~~dliilD~~l~~~-~g---~~~~~~lr~~~~~~~~pii~~t~~ 98 (152)
T 3heb_A 56 SAGRAQLVLLDLNLPDM-TG---IDILKLVKENPHTRRSPVVILTTT 98 (152)
T ss_dssp GTTCBEEEEECSBCSSS-BH---HHHHHHHHHSTTTTTSCEEEEESC
T ss_pred ccCCCCEEEEeCCCCCC-cH---HHHHHHHHhcccccCCCEEEEecC
Confidence 46789999998653221 11 123444433 246888888544
No 335
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.53 E-value=1.1e+02 Score=16.94 Aligned_cols=47 Identities=4% Similarity=0.029 Sum_probs=26.3
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~ 156 (161)
.++..+...+..+|++++...-... .+ -...+.+-.. ..+|++++-.
T Consensus 34 ~~~a~~~~~~~~~dlvl~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~ 81 (116)
T 3a10_A 34 GEEALKKFFSGNYDLVILDIEMPGI-SG---LEVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSSS-CH---HHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCC-CH---HHHHHHHHccCCCCeEEEEEC
Confidence 3444555666789999998653321 11 1233444332 3578887743
No 336
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=22.50 E-value=1.3e+02 Score=20.02 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=11.8
Q ss_pred HhHHHHHHHhcCCCEEEEec
Q 031355 106 RNILCEAVEKHHASILVVGS 125 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~ 125 (161)
.+.+++.+++.++|+||+..
T Consensus 21 ~~~~l~~~~~~~~D~vi~~G 40 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVG 40 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 34555555555677766653
No 337
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=22.42 E-value=49 Score=27.06 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=30.6
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc---CCCcEEEEcC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH---AHCTVMIVKR 156 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~---~~~pvlvv~~ 156 (161)
...|.++++++++++|++|....+.-... ....++.. .++|++++.+
T Consensus 372 ~~~l~~li~~~~~~~IaIGngtasret~~----~v~~l~~~~~~~~i~~v~v~e 421 (785)
T 3bzc_A 372 LAVLAALCAKHQVELIAIGNGTASRETDK----LAGELIKKYPGMKLTKIMVSE 421 (785)
T ss_dssp HHHHHHHHHHHTCCEEEEESSTTHHHHHH----HHHHHHHHCGGGCCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEECCCccCHHHHH----HHHHHHHhcccCCCCEEEEcC
Confidence 35789999999999999997433322212 23334432 3588888865
No 338
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=22.31 E-value=2.5e+02 Score=20.98 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=22.7
Q ss_pred eeEEEE-ecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 031355 7 QTMVVG-IDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (161)
Q Consensus 7 ~~ilv~-~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v 47 (161)
+.|++. ..++-.+..+...|..++... | -++.++-.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G----~kVllvd~ 137 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKH-K----KKVLVVSA 137 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTS-C----CCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc-C----CeEEEEec
Confidence 344443 235567788888898888863 4 36666544
No 339
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=22.27 E-value=1.4e+02 Score=17.98 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=29.5
Q ss_pred hHhHHHHHHHhcCCCEEEEecCCCCcceeeec--cchHHHHhhcCCCcEEEEcC
Q 031355 105 ARNILCEAVEKHHASILVVGSHGYGAIKRAVL--GSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~--gs~~~~ll~~~~~pvlvv~~ 156 (161)
-...+++.+++.++|.||+-.-. .+.+-.. .......+...++.+..+..
T Consensus 59 ~l~~ll~~~~~g~~d~lvv~~ld--Rl~R~~~~~~~~~~~~l~~~gv~l~~~~~ 110 (138)
T 3bvp_A 59 AMQRLINDIENKAFDTVLVYKLD--RLSRSVRDTLYLVKDVFTKNKIDFISLNE 110 (138)
T ss_dssp HHHHHHHGGGGTSCSEEEESSHH--HHCSCHHHHHHHHHHTTGGGTCEEEETTT
T ss_pred HHHHHHHHHHhCCCCEEEEEeCC--cccccHHHHHHHHHHHHHHCCCEEEEecC
Confidence 35778888998899999986532 2222110 01112345566788877654
No 340
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=22.26 E-value=1.2e+02 Score=19.25 Aligned_cols=39 Identities=8% Similarity=0.183 Sum_probs=28.5
Q ss_pred CceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 5 ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 5 ~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
..+.+++.++.|..+...++ +++.|+.. | +++.++.-.+
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~-g----~~vI~IT~~~ 146 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVK-AVEAAVTR-D----MTIVALTGYD 146 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHT-T----CEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHC-C----CEEEEEeCCC
Confidence 45679999999988888776 55666765 7 7877775543
No 341
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=22.21 E-value=1.1e+02 Score=16.73 Aligned_cols=45 Identities=7% Similarity=-0.070 Sum_probs=29.7
Q ss_pred CCCCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 1 MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 1 ~~~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
|+..-++.|=+.-........|++-|+.-|..... ++.-+.|.+.
T Consensus 1 Ms~~vyKviElvGsS~~S~edAi~nAi~~AskTl~-----ni~~~eV~e~ 45 (72)
T 2vxa_A 1 MSDHVYKIVELTGSSPNGIEEAVNNAIARAGETLR-----HLRWFEVVDT 45 (72)
T ss_dssp --CCEEEEEEEEEEESSCHHHHHHHHHHHHHHHCC-----CEEEEEEEEE
T ss_pred CCCcEEEEEEEEECCCCCHHHHHHHHHHHHHhhcc-----CCeEEEEEEE
Confidence 44445555555555556788899999999987645 7777777554
No 342
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=22.11 E-value=50 Score=19.59 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=24.0
Q ss_pred ceeEEEEecCChhH----HHHHHHHHHHhhccCCCCCCcEEEEEEecC
Q 031355 6 TQTMVVGIDDSEQS----TYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (161)
Q Consensus 6 ~~~ilv~~d~s~~s----~~al~~a~~la~~~~~~~~~a~l~~l~v~~ 49 (161)
++++++.+..+|++ ..+++.|...+.. + -++.++...+
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a~--~----~~v~vff~~D 42 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSAL--T----DDLAVFFIAD 42 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTT--C----SCEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhC--C----CCEEEEEehH
Confidence 35788888876654 5567777766653 3 3676665543
No 343
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=21.95 E-value=2.4e+02 Score=20.77 Aligned_cols=103 Identities=9% Similarity=0.082 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccEE
Q 031355 18 QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFV 97 (161)
Q Consensus 18 ~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (161)
.-..++++|-.++. . | +.+....++.+......+.+. ..+.+..+.+.+++.|.. +-
T Consensus 154 s~e~a~~~a~~~k~-a-G----a~~vk~q~fkprts~~~f~gl----------------~~egl~~L~~~~~~~Gl~-~~ 210 (385)
T 3nvt_A 154 SYEQVAAVAESIKA-K-G----LKLIRGGAFKPRTSPYDFQGL----------------GLEGLKILKRVSDEYGLG-VI 210 (385)
T ss_dssp CHHHHHHHHHHHHH-T-T----CCEEECBSSCCCSSTTSCCCC----------------THHHHHHHHHHHHHHTCE-EE
T ss_pred CHHHHHHHHHHHHH-c-C----CCeEEcccccCCCChHhhcCC----------------CHHHHHHHHHHHHHcCCE-EE
Confidence 34556666666665 3 6 788877777543322111111 013445666777777765 55
Q ss_pred EEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 98 VEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 98 ~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
+.+..-...+.+ .+. +|.+=+|+..-..+. ..+. +..+++||++=.
T Consensus 211 te~~d~~~~~~l----~~~-vd~lkIgs~~~~n~~------LL~~-~a~~gkPVilk~ 256 (385)
T 3nvt_A 211 SEIVTPADIEVA----LDY-VDVIQIGARNMQNFE------LLKA-AGRVDKPILLKR 256 (385)
T ss_dssp EECCSGGGHHHH----TTT-CSEEEECGGGTTCHH------HHHH-HHTSSSCEEEEC
T ss_pred EecCCHHHHHHH----Hhh-CCEEEECcccccCHH------HHHH-HHccCCcEEEec
Confidence 544444333333 344 889988887543321 1122 234566666654
No 344
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=21.94 E-value=66 Score=22.01 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=18.7
Q ss_pred CChHhHHHHHHHhcCCCEEEEe
Q 031355 103 GDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 103 g~~~~~I~~~a~~~~~dliVlg 124 (161)
=++..++++.|.+.++||||.=
T Consensus 42 lD~t~~vi~eAi~~~adlIitH 63 (247)
T 1nmo_A 42 VTASQALLDEAVRLGADAVIVH 63 (247)
T ss_dssp EECCHHHHHHHHHTTCSEEEEE
T ss_pred EcCCHHHHHHHHhCCCCEEEEC
Confidence 3778889999999999998874
No 345
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=21.93 E-value=73 Score=22.19 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=21.8
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGY 128 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~ 128 (161)
-|.+.|++.++++++|+|.+..--.
T Consensus 167 vp~e~iv~aa~e~~~d~VglS~l~t 191 (262)
T 1xrs_B 167 VANEDFIKKAVELEADVLLVSQTVT 191 (262)
T ss_dssp BCHHHHHHHHHHTTCSEEEEECCCC
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecC
Confidence 4899999999999999999986543
No 346
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=21.49 E-value=1.6e+02 Score=18.53 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=16.1
Q ss_pred hhhcCCccEEEEEEcCCh---HhHHHHHHHhcCCCEEEEe
Q 031355 88 CSSKSVHDFVVEVVEGDA---RNILCEAVEKHHASILVVG 124 (161)
Q Consensus 88 ~~~~~~~~~~~~v~~g~~---~~~I~~~a~~~~~dliVlg 124 (161)
+.+.|.......+..+++ .+.|.+.++ .++|+||..
T Consensus 38 l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~-~~~DlVitt 76 (167)
T 2g2c_A 38 LQDYSYELISEVVVPEGYDTVVEAIATALK-QGARFIITA 76 (167)
T ss_dssp ---CEEEEEEEEEECSSHHHHHHHHHHHHH-TTCSEEEEE
T ss_pred HHHCCCEEeEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEC
Confidence 555565433444444432 233333332 259999884
No 347
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=21.47 E-value=2e+02 Score=19.56 Aligned_cols=41 Identities=2% Similarity=-0.136 Sum_probs=28.0
Q ss_pred CceeEEEEecCC---hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 031355 5 ETQTMVVGIDDS---EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (161)
Q Consensus 5 ~~~~ilv~~d~s---~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~ 50 (161)
.+.+||+..... ..+..+++++...+... | +++.++.+.+.
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~-g----~eve~idL~~~ 76 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFF-G----AEVKVFDPSGL 76 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHT-T----CEEEECCCTTC
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhC-C----CEEEEEEhhcC
Confidence 345676655432 35778888888887765 6 78888887654
No 348
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.43 E-value=2.6e+02 Score=20.89 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=15.3
Q ss_pred HHHHHHhcCCCEEEEecCCCCc
Q 031355 109 LCEAVEKHHASILVVGSHGYGA 130 (161)
Q Consensus 109 I~~~a~~~~~dliVlg~~~~~~ 130 (161)
.++.++..++|++|+...++..
T Consensus 172 ~l~~~~~~~~DvVIIDTaG~l~ 193 (425)
T 2ffh_A 172 VEEKARLEARDLILVDTAGRLQ 193 (425)
T ss_dssp HHHHHHHTTCSEEEEECCCCSS
T ss_pred HHHHHHHCCCCEEEEcCCCccc
Confidence 4455555689999998776543
No 349
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=21.37 E-value=1.4e+02 Score=17.83 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=26.8
Q ss_pred CChHhHHHHHHHhc--CCCEEEEecCCCCcceeeeccchHHHHhh-cCCCcEEEEcCC
Q 031355 103 GDARNILCEAVEKH--HASILVVGSHGYGAIKRAVLGSVSDYCAH-HAHCTVMIVKRP 157 (161)
Q Consensus 103 g~~~~~I~~~a~~~--~~dliVlg~~~~~~~~~~~~gs~~~~ll~-~~~~pvlvv~~~ 157 (161)
.+..+ .++...+. .+|+|++...-.. ..+ -.+.+.+-. ...+||+++-..
T Consensus 68 ~~~~~-al~~l~~~~~~~dliilD~~l~~-~~g---~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 68 ADGEE-AVIKYKNHYPNIDIVTLXITMPK-MDG---ITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp SSHHH-HHHHHHHHGGGCCEEEECSSCSS-SCH---HHHHHHHHHHCTTCCEEEEESC
T ss_pred CCHHH-HHHHHHhcCCCCCEEEEeccCCC-ccH---HHHHHHHHhhCCCCcEEEEecc
Confidence 34443 44444555 7899999876332 111 123344433 245888887543
No 350
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=21.36 E-value=1.9e+02 Score=19.41 Aligned_cols=68 Identities=12% Similarity=0.054 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhcCCccEEEEEEcC--Ch--HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 79 RVVEEAKEICSSKSVHDFVVEVVEG--DA--RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~v~~g--~~--~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
.....+.+.+.+.|.. +.+....+ ++ ....++.+...++|-||+.......+. ...+. +. .++||+++
T Consensus 22 ~~~~g~~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~~~~-~~-~~iPvV~~ 93 (304)
T 3o1i_D 22 SVNYGMVSEAEKQGVN-LRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE-----HNLKS-WV-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHHHHHHTCE-EEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST-----TTHHH-HT-TTSCEEEC
T ss_pred HHHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-----HHHHH-Hc-CCCCEEEe
Confidence 3444455555555643 44443444 43 334566666779999998755433221 22333 34 79999988
No 351
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=21.36 E-value=1.7e+02 Score=18.78 Aligned_cols=41 Identities=15% Similarity=-0.032 Sum_probs=21.8
Q ss_pred HHHHHHhhhcCCccEEEEEEcCCh---HhHHHHHHHhcCCCEEEEe
Q 031355 82 EEAKEICSSKSVHDFVVEVVEGDA---RNILCEAVEKHHASILVVG 124 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~g~~---~~~I~~~a~~~~~dliVlg 124 (161)
..+.+++.+.|.......+..+++ .+.|.+.+. .+|+||..
T Consensus 26 ~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~--~~DlVitt 69 (172)
T 3kbq_A 26 AFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALE--VSDLVVSS 69 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH--HCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh--cCCEEEEc
Confidence 344555666676534444444432 333444444 48999874
No 352
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.27 E-value=2e+02 Score=19.57 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCCccEEEEEEcCChH--hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 80 VVEEAKEICSSKSVHDFVVEVVEGDAR--NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
....+.+.+.+.|.. +......+++. ..+++.....++|-||+......... .. -+.+...++||+++-..
T Consensus 20 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~~iPvV~~~~~ 92 (313)
T 3m9w_A 20 DRDIFVKKAESLGAK-VFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLS-----NV-VKEAKQEGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHHHHHTSCE-EEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCH-----HH-HHHHHTTTCEEEEESSC
T ss_pred HHHHHHHHHHHcCCE-EEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----HH-HHHHHHCCCeEEEECCc
Confidence 344455555555643 44333334543 34566677779999998765433211 12 23445678999988543
No 353
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=21.11 E-value=1e+02 Score=21.89 Aligned_cols=32 Identities=3% Similarity=0.069 Sum_probs=23.1
Q ss_pred cCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 116 HHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 116 ~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.++||||.... . .....+++....+||++++.
T Consensus 95 l~PDLIi~~~~--~-------~~~~~~~~~~~GiPvv~~~~ 126 (346)
T 2etv_A 95 LQPDVVFITYV--D-------RXTAXDIQEXTGIPVVVLSY 126 (346)
T ss_dssp HCCSEEEEESC--C-------HHHHHHHHHHHTSCEEEECC
T ss_pred CCCCEEEEeCC--c-------cchHHHHHHhcCCcEEEEec
Confidence 48999998642 1 23456677788899999964
No 354
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=21.08 E-value=1.9e+02 Score=19.10 Aligned_cols=48 Identities=4% Similarity=0.014 Sum_probs=27.5
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
.++.++.+++..+|+|++...-.. ..+ -.+.+.+-.. ..+||+++-..
T Consensus 56 ~~~al~~~~~~~~dlvllD~~lp~-~~g---~~~~~~lr~~~~~~~ii~lt~~ 104 (250)
T 3r0j_A 56 GAQALDRARETRPDAVILDVXMPG-MDG---FGVLRRLRADGIDAPALFLTAR 104 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSS-SCH---HHHHHHHHHTTCCCCEEEEECS
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCCEEEEECC
Confidence 344455566678999999865322 111 1234444433 46888888543
No 355
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=21.02 E-value=1.9e+02 Score=20.40 Aligned_cols=42 Identities=7% Similarity=-0.169 Sum_probs=24.9
Q ss_pred CChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHH-HhhcCCCcEEE
Q 031355 103 GDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDY-CAHHAHCTVMI 153 (161)
Q Consensus 103 g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~-ll~~~~~pvlv 153 (161)
|.......+......+|.||+-....+. .+. +...+.+||+=
T Consensus 76 gEsl~DTarvls~~~~D~iviR~~~~~~---------~~~~la~~~~vPVIN 118 (291)
T 3d6n_B 76 GESFFDTLKTFEGLGFDYVVFRVPFVFF---------PYKEIVKSLNLRLVN 118 (291)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEESSCCC---------SCHHHHHTCSSEEEE
T ss_pred CCcHHHHHHHHHHhcCCEEEEEcCChHH---------HHHHHHHhCCCCEEe
Confidence 3333333344444457999997765432 345 66778899863
No 356
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=21.01 E-value=2e+02 Score=19.43 Aligned_cols=70 Identities=10% Similarity=0.069 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCCccEEEEEEcC-ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcC
Q 031355 78 ARVVEEAKEICSSKSVHDFVVEVVEG-DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156 (161)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~ 156 (161)
.+.+..+.+.+.+.|.. +......+ .....+++.....++|-||+....... ..-..+...++||+++-.
T Consensus 26 ~~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 26 LEMISWIGIELGKRGLD-LLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHTTCE-EEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCE-EEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--------HHHHHHHhCCCCEEEECC
Confidence 34455556666666653 33333332 345667888888899999986543221 122345667899998854
No 357
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=20.97 E-value=1.7e+02 Score=19.50 Aligned_cols=49 Identities=10% Similarity=-0.056 Sum_probs=29.6
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
..+..+.+.+.+++.+++...++.+...-.--....++...+++||+..
T Consensus 154 ~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~ 202 (252)
T 1ka9_F 154 AVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIAS 202 (252)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEe
Confidence 3455666777899988876443332211111245566777789999875
No 358
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=20.92 E-value=1.7e+02 Score=19.21 Aligned_cols=16 Identities=13% Similarity=-0.128 Sum_probs=7.0
Q ss_pred CCCCCceeEEEEecCC
Q 031355 1 MATAETQTMVVGIDDS 16 (161)
Q Consensus 1 ~~~~~~~~ilv~~d~s 16 (161)
|..+...+|.+-+-.+
T Consensus 1 ~~~~~~~~ig~i~p~~ 16 (228)
T 2eq5_A 1 MYRMDKYTIGLIRVIT 16 (228)
T ss_dssp -----CEEEEEEESSC
T ss_pred CCCccceEEEEEeccC
Confidence 5555566666666655
No 359
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=20.81 E-value=2.4e+02 Score=20.32 Aligned_cols=60 Identities=12% Similarity=-0.057 Sum_probs=35.8
Q ss_pred EEEEEEcCChHhH--HHHHHHhcCCCEEEEecCCCCc-ceeeeccchHHHHhh-cCCCcEEEEc
Q 031355 96 FVVEVVEGDARNI--LCEAVEKHHASILVVGSHGYGA-IKRAVLGSVSDYCAH-HAHCTVMIVK 155 (161)
Q Consensus 96 ~~~~v~~g~~~~~--I~~~a~~~~~dliVlg~~~~~~-~~~~~~gs~~~~ll~-~~~~pvlvv~ 155 (161)
+-..+...+..+. +.+.|++.++|-+++...-... ...--+-..-+.|.. .++.||++..
T Consensus 95 ViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn 158 (344)
T 2hmc_A 95 VIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYN 158 (344)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEE
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 4333333344444 4677899999999888664433 211111223355777 7899999863
No 360
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=20.75 E-value=1.2e+02 Score=17.40 Aligned_cols=21 Identities=5% Similarity=0.346 Sum_probs=11.7
Q ss_pred hHHHHHHHhcCCCEEEEecCC
Q 031355 107 NILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~ 127 (161)
+++.+..+...+-++|+....
T Consensus 25 ~~v~kai~~gka~lViiA~D~ 45 (101)
T 3v7q_A 25 DLVIKEIRNARAKLVLLTEDA 45 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTS
T ss_pred hhhHHHHhcCceeEEEEeccc
Confidence 344555555666666665443
No 361
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.67 E-value=2e+02 Score=19.37 Aligned_cols=68 Identities=10% Similarity=-0.039 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhcCCccEEEEEEc-CChH--hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 79 RVVEEAKEICSSKSVHDFVVEVVE-GDAR--NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~v~~-g~~~--~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
...+.+.+.+.+.|.. + .+.. +++. ...++.....++|-||+........ ... -+.+....+||+++-
T Consensus 19 ~~~~gi~~~a~~~g~~-~--~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-----~~~-~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 19 TEWKFADKAGKDLGFE-V--IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG-----SAI-VAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHHHHHHTEE-E--EEEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGH-----HHH-HHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCE-E--EEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhh-----HHH-HHHHHHCCCcEEEeC
Confidence 3344444555555543 2 2332 3443 3345556667899999875432211 111 223556789999986
No 362
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=20.62 E-value=1.9e+02 Score=22.25 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=31.7
Q ss_pred hHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 105 ARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 105 ~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
.+......|.+.++..||.-+.. |.++..+.+. .+|||+.+-+.
T Consensus 382 ia~aa~~~a~~~~a~aIv~~T~s---------G~ta~~isr~RP~~pI~a~t~~ 426 (500)
T 1a3w_A 382 VAASAVAAVFEQKAKAIIVLSTS---------GTTPRLVSKYRPNCPIILVTRC 426 (500)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSS---------SHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCCEEEEcCC
Confidence 45566677888899988876543 6677777774 56999988654
No 363
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.61 E-value=2e+02 Score=19.18 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhcCCccEEEEEEcCCh--HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 78 ARVVEEAKEICSSKSVHDFVVEVVEGDA--RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
.+.+..+.+.+.+.|.. +......++. ...+++.....++|-||+..... ... -..+...++||+++-
T Consensus 23 ~~~~~gi~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--------~~~-~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 23 TELFKGISSILESRGYI-GVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--------PQT-VQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHHHHHHHTTTCE-EEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--------HHH-HHHHHTTSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCE-EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--------HHH-HHHHHHCCCCEEEEe
Confidence 34555666666666653 4443333443 34566777778999999875432 112 234556789999885
Q ss_pred CC
Q 031355 156 RP 157 (161)
Q Consensus 156 ~~ 157 (161)
..
T Consensus 93 ~~ 94 (276)
T 3jy6_A 93 RE 94 (276)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 364
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=20.54 E-value=2.1e+02 Score=19.43 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=27.5
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK 155 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~ 155 (161)
..+.+.+.+.++|.|.++.. .. -....++...+++||+..-
T Consensus 169 ~~~a~~a~~~Gad~i~~~~~--~~------~~~l~~i~~~~~ipvva~G 209 (273)
T 2qjg_A 169 AHAARLGAELGADIVKTSYT--GD------IDSFRDVVKGCPAPVVVAG 209 (273)
T ss_dssp HHHHHHHHHTTCSEEEECCC--SS------HHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHcCCCEEEECCC--CC------HHHHHHHHHhCCCCEEEEe
Confidence 34457788899999988731 11 1344567767789998764
No 365
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=20.53 E-value=3e+02 Score=21.23 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHHHHHHHhhhcCCccE
Q 031355 17 EQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDF 96 (161)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (161)
..+++.+++|+++|... + + -+|+++|=....... . --+.+.+++...+++.+.+
T Consensus 165 ~~ieRIar~AFe~A~~r-~-r--kkVT~V~KaNVlk~s----------------d------Glfr~v~~eVa~eYPdI~~ 218 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAE-G-R--KKVHCATKSNIMKLA----------------E------GTLKRAFEQVAQEYPDIEA 218 (496)
T ss_dssp HHHHHHHHHHHHHHHHT-T-C--CEEEEEECTTTCTTH----------------H------HHHHHHHHHHHTTCTTSEE
T ss_pred HHHHHHHHHHHHHHHhc-C-C--CcEEEEECCCchhhH----------------H------HHHHHHHHHHHHHCCCceE
Confidence 46889999999999975 3 1 378888865543321 1 0122333444456666544
Q ss_pred EEEEEcCChHhHHHHHHHhcCCCEEEEe
Q 031355 97 VVEVVEGDARNILCEAVEKHHASILVVG 124 (161)
Q Consensus 97 ~~~v~~g~~~~~I~~~a~~~~~dliVlg 124 (161)
+.... .+..-.++..=. ..|+||..
T Consensus 219 e~~~V-D~~amqLV~~P~--~FDVIVt~ 243 (496)
T 2d1c_A 219 VHIIV-DNAAHQLVKRPE--QFEVIVTT 243 (496)
T ss_dssp EEEEH-HHHHHHHHHCGG--GCSEEEEC
T ss_pred EEEeH-HHHHHHHhhCcC--cceEEEEC
Confidence 44333 344444444444 77877774
No 366
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=20.50 E-value=74 Score=26.98 Aligned_cols=48 Identities=6% Similarity=0.140 Sum_probs=30.3
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhh--------cCCCcEEEEcCC
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAH--------HAHCTVMIVKRP 157 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~--------~~~~pvlvv~~~ 157 (161)
+.|.++++++++++|+||..++ -...|...+.. ++. ..++++++|.+.
T Consensus 568 ~~l~~li~~~~~~~IaIGn~s~--et~~l~~~l~~-~i~~~~~~~~~~~~i~~~iV~e~ 623 (1030)
T 3psf_A 568 DTLDNIIQSCQPNAIGINGPNP--KTQKFYKRLQE-VLHKKQIVDSRGHTIPIIYVEDE 623 (1030)
T ss_dssp HHHHHHHHHHCCSEEEECCSST--HHHHHHHHHHH-HHHHTTCBCTTSCBCCEEECCCT
T ss_pred HHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHHH-HHHhhccccccCCCccEEEecch
Confidence 6788999999999999996322 12223232322 222 135889988764
No 367
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=20.34 E-value=2.3e+02 Score=22.00 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=33.5
Q ss_pred ChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhc-CCCcEEEEcCC
Q 031355 104 DARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHH-AHCTVMIVKRP 157 (161)
Q Consensus 104 ~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~-~~~pvlvv~~~ 157 (161)
..+......|.+.++..||.-+.. |.++..+.+. .+|||+.+-+.
T Consensus 411 aia~aa~~~A~~l~a~aIv~~T~s---------G~tA~~iSr~RP~~pI~a~T~~ 456 (526)
T 4drs_A 411 AIACSAVESAHDVNAKLIITITET---------GNTARLISKYRPSQTIIACTAK 456 (526)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCC
Confidence 345666788899999998886553 6777777774 56999988653
No 368
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=20.25 E-value=1e+02 Score=21.32 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=23.0
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEE
Q 031355 107 NILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMI 153 (161)
Q Consensus 107 ~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlv 153 (161)
..+.+..++.++|+|||.....+. ..+.+-...++||+=
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~--------~l~~lr~~~~iPvig 127 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY--------WFDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG--------GHHHHHHHCSSEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH--------HHHHHHHHCCCCEEc
Confidence 334455667789999998775432 123444455666653
No 369
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=20.22 E-value=22 Score=20.96 Aligned_cols=41 Identities=10% Similarity=-0.080 Sum_probs=23.9
Q ss_pred HHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCC
Q 031355 83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~ 127 (161)
.+.+.+.+... +....+.|+.+.+= +-...++|++|+....
T Consensus 16 ~i~~~l~~~~~--v~~v~LFGS~ArG~--~~~~SDIDl~V~~~~~ 56 (114)
T 1no5_A 16 IVKTILQQLVP--DYTVWAFGSRVKGK--AKKYSDLDLAIISEEP 56 (114)
T ss_dssp HHHHHHHHHCT--TSEEEEEGGGTTTC--CCTTCCEEEEEECSSC
T ss_pred HHHHHHHHhCC--CCEEEEEeccCCCC--CCCCCCeEEEEEeCCC
Confidence 34444444322 23566788877652 3334699999988654
No 370
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=20.19 E-value=1.8e+02 Score=19.43 Aligned_cols=65 Identities=8% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhcCCccEEEEEEc--CCh--HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEE
Q 031355 78 ARVVEEAKEICSSKSVHDFVVEVVE--GDA--RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMI 153 (161)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~v~~--g~~--~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlv 153 (161)
.+....+.+.+.+.|.. + ..+.. ++. ...+++.....++|-||+.. .. .+ -+...++||++
T Consensus 26 ~~~~~gi~~~a~~~g~~-~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~---------~~-~~~~~~iPvV~ 90 (277)
T 3hs3_A 26 AQIIDGIQEVIQKEGYT-A-LISFSTNSDVKKYQNAIINFENNNVDGIITSA---FT---------IP-PNFHLNTPLVM 90 (277)
T ss_dssp HHHHHHHHHHHHHTTCE-E-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CC---------CC-TTCCCSSCEEE
T ss_pred HHHHHHHHHHHHHCCCC-E-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hH---------HH-HHHhCCCCEEE
Confidence 34455556666666642 0 22332 343 33456777778999988875 11 11 23556889888
Q ss_pred EcCC
Q 031355 154 VKRP 157 (161)
Q Consensus 154 v~~~ 157 (161)
+-..
T Consensus 91 ~~~~ 94 (277)
T 3hs3_A 91 YDSA 94 (277)
T ss_dssp ESCC
T ss_pred Eccc
Confidence 8543
No 371
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=20.14 E-value=2.1e+02 Score=19.28 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=30.5
Q ss_pred HhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEE
Q 031355 106 RNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV 154 (161)
Q Consensus 106 ~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv 154 (161)
..+..+.+.+.+++.|++....+.+...-.--.....+...+++||+..
T Consensus 158 ~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~ 206 (266)
T 2w6r_A 158 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 206 (266)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEe
Confidence 4566677788899999985433322111111235566777788998875
No 372
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=20.02 E-value=2.2e+02 Score=19.77 Aligned_cols=34 Identities=6% Similarity=0.006 Sum_probs=22.7
Q ss_pred hcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEcCC
Q 031355 115 KHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157 (161)
Q Consensus 115 ~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~~~ 157 (161)
..++|||+.+.... ... ..-+....+||++++..
T Consensus 82 ~l~PDlIi~~~~~~--------~~~-~~~L~~~Gipvv~~~~~ 115 (326)
T 3psh_A 82 ALKPDVVFVTNYAP--------SEM-IKQISDVNIPVVAISLR 115 (326)
T ss_dssp HTCCSEEEEETTCC--------HHH-HHHHHTTTCCEEEECSC
T ss_pred ccCCCEEEEeCCCC--------hHH-HHHHHHcCCCEEEEecc
Confidence 45999999874321 122 34557789999999754
Done!