BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031356
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2R48|A Chain A, Crystal Structure Of The Fructose Specific Iib Subunit
          Of Pts System From Bacillus Subtilis Subsp. Subtilis
          Str. 168
          Length = 106

 Score = 27.7 bits (60), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 29 PFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQS 88
          P  +AH   + + L+  A+R+ VSI +  QG     +  LT++   +    +I+ + S +
Sbjct: 12 PNGIAHTYXAAENLQKAADRLGVSIKVETQG-GIGVENKLTEEEIREADAIIIAADRSVN 70

Query: 89 WERLDAGGILS 99
           +R     +LS
Sbjct: 71 KDRFIGKKLLS 81


>pdb|1UF9|A Chain A, Crystal Structure Of Tt1252 From Thermus Thermophilus
 pdb|1UF9|B Chain B, Crystal Structure Of Tt1252 From Thermus Thermophilus
 pdb|1UF9|C Chain C, Crystal Structure Of Tt1252 From Thermus Thermophilus
          Length = 203

 Score = 26.6 bits (57), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 125 TKAALQEAYSTPMLPLDVLAEKPTENKLE 153
           T AAL  ++  P+L LD LA +  ENK E
Sbjct: 23  TVAALLRSWGYPVLDLDALAARARENKEE 51


>pdb|3CU7|A Chain A, Human Complement Component 5
 pdb|3CU7|B Chain B, Human Complement Component 5
 pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The
          C-Terminal Beta-Grasp Domain Of Ssl7
 pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The
          C-Terminal Beta-Grasp Domain Of Ssl7
 pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
          Length = 1676

 Score = 26.6 bits (57), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 40 KRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWER 91
          K  + GA   S +I I   G + A+D +++  S+P  KF   SG++  S E 
Sbjct: 29 KIFRVGA---SENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSEN 77


>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
 pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
          Length = 1676

 Score = 26.6 bits (57), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 40 KRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWER 91
          K  + GA   S +I I   G + A+D +++  S+P  KF   SG++  S E 
Sbjct: 29 KIFRVGA---SENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSEN 77


>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
          Length = 1580

 Score = 26.6 bits (57), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 40 KRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWER 91
          K  + GA   S +I I   G + A+D +++  S+P  KF   SG++  S E 
Sbjct: 11 KIFRVGA---SENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSEN 59


>pdb|3RAU|A Chain A, Crystal Structure Of The Hd-Ptp Bro1 Domain
 pdb|3RAU|B Chain B, Crystal Structure Of The Hd-Ptp Bro1 Domain
          Length = 363

 Score = 25.8 bits (55), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 104 LDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAE 145
           LD K  G FH  PA+  F +       EAY+  +  L++L +
Sbjct: 14  LDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQ 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,130,906
Number of Sequences: 62578
Number of extensions: 155642
Number of successful extensions: 275
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 6
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)