BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031356
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23438|SSRB_CANFA Translocon-associated protein subunit beta OS=Canis familiaris
GN=SSR2 PE=1 SV=1
Length = 183
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 9 LISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSL 68
L SVL+ALF +S + + + K+ L R +++ +I+N G+S A DV L
Sbjct: 4 LASVLLALFAVSHAEEGARL----LASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 69 TDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITF 121
+DDS+P + F ++SG ++ W+R+ +SH+ L G F+ + A +T+
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTY 112
>sp|P43308|SSRB_HUMAN Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2
PE=1 SV=1
Length = 183
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 12 VLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDD 71
V++ALF ++ + + + K+ L R +++ +I+N G+S A DV L+DD
Sbjct: 7 VVLALFAVTQAEEGARL----LASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDD 62
Query: 72 SWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITF 121
S+P + F ++SG ++ W+R+ +SH+ L G F+ + A IT+
Sbjct: 63 SFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112
>sp|Q5E9E4|SSRB_BOVIN Translocon-associated protein subunit beta OS=Bos taurus GN=SSR2
PE=2 SV=1
Length = 183
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
K+ L R +++ +I+N G+S A DV L+DDS+P + F ++SG ++ W+R+
Sbjct: 27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86
Query: 96 GILSHSFELDAKVKGMFHGSPALITF 121
+SH+ L G F+ + A +T+
Sbjct: 87 SNVSHTVVLRPLKAGYFNFTSATVTY 112
>sp|Q9CPW5|SSRB_MOUSE Translocon-associated protein subunit beta OS=Mus musculus GN=Ssr2
PE=1 SV=1
Length = 183
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
K+ L R +++ +I+N G+S A DV L+DDS+P + F ++SG ++ W+R+
Sbjct: 27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86
Query: 96 GILSHSFELDAKVKGMFHGSPALITF 121
+SH+ L G F+ + A IT+
Sbjct: 87 SNVSHTVVLRPLKAGYFNFTSATITY 112
>sp|Q54VI6|SSRB_DICDI Translocon-associated protein subunit beta OS=Dictyostelium
discoideum GN=ssr2 PE=2 SV=2
Length = 184
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 7 KSLISVLIALFLISSSFASSDVPFIVAHKKASL---KRLKSG---AERISVSIDIHNQGT 60
K++IS+ + LF V F+ A L K++ G + + + I+N G+
Sbjct: 4 KTVISLFLVLF----------VSFVYCENGAELLFHKKIVEGPVVGKELPIQFIIYNVGS 53
Query: 61 STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
AYD+S D+ + +F+ +SG+ WE L + + + K G++ + ++
Sbjct: 54 EPAYDISFIDNDFSNAEFEFVSGSSEGKWETLAPNSQVQTNLTVIPKKSGIYSLTSTVLN 113
Query: 121 FR 122
+R
Sbjct: 114 YR 115
>sp|Q22169|SSRB_CAEEL Translocon-associated protein subunit beta OS=Caenorhabditis
elegans GN=trap-2 PE=1 SV=1
Length = 188
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 30 FIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTD-DSWPQDKFDVISGNISQS 88
FI+AHK+ L + ++N G A V++ D S+P + FD++ G +
Sbjct: 26 FILAHKQP-LSTYAVENMDFVLEYGLYNVGDKPAQKVTIDDRHSFPTNSFDIVKGLLFVH 84
Query: 89 WERLDAGGILSHSFELDAKVKGMFHGSPALITF 121
+E++ AG ++HS + + G F+ + A +T+
Sbjct: 85 FEQIPAGSNVTHSVVIRPRAFGFFNYTAAQVTY 117
>sp|C1GYK6|FCJ1_PARBA Formation of crista junctions protein 1 OS=Paracoccidioides
brasiliensis (strain ATCC MYA-826 / Pb01) GN=FCJ1 PE=3
SV=1
Length = 685
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 14 IALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSW 73
+A+ + ++ +S+VP + A++K+L S E +S +ID + AY + +
Sbjct: 514 VAVDAVRTTLENSNVPRPFIRELAAVKKLASNDEVVSAAID---SISPVAYQRGIPSSAQ 570
Query: 74 PQDKFDVISGNISQSWERLDAGGILSH--SFELDAKVKGMFHGSPA 117
D+F ++ + ++ + GI SH SF L +KV HGSPA
Sbjct: 571 LVDRFRRVASEVRKASLLPENAGITSHAASFVL-SKVMLKKHGSPA 615
>sp|C1G784|FCJ1_PARBD Formation of crista junctions protein 1 OS=Paracoccidioides
brasiliensis (strain Pb18) GN=FCJ1 PE=3 SV=1
Length = 641
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 14 IALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSW 73
+A+ + ++ +S+VP + A++K L S E +S +ID + AY + +
Sbjct: 470 VAVDAVRTTLENSNVPRPFIRELAAVKELASNDEVVSAAID---SISPVAYQRGIPSSAH 526
Query: 74 PQDKFDVISGNISQSWERLDAGGILSH--SFELDAKVKGMFHGSPA 117
D+F ++ + ++ + GI SH SF L+ KV HGSPA
Sbjct: 527 LVDRFRRVATEVRKASLLPENAGITSHAASFVLN-KVMLKKHGSPA 571
>sp|C0RYV1|FCJ1_PARBP Formation of crista junctions protein 1 OS=Paracoccidioides
brasiliensis (strain Pb03) GN=FCJ1 PE=3 SV=1
Length = 666
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 14 IALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSW 73
+A+ + ++ +S+VP + A++K L S E +S +ID + AY + +
Sbjct: 495 VAVDAVRTTLENSNVPRPFIRELAAVKELASNDEVVSAAID---SISPVAYQRGIPSSAH 551
Query: 74 PQDKFDVISGNISQSWERLDAGGILSH--SFELDAKVKGMFHGSPA 117
D+F ++ + ++ + GI SH SF L+ KV HGSPA
Sbjct: 552 LVDRFRRVATEVRKASLLPENAGITSHAASFVLN-KVMLKKHGSPA 596
>sp|Q1B6R7|AMPA_MYCSS Probable cytosol aminopeptidase OS=Mycobacterium sp. (strain MCS)
GN=pepA PE=3 SV=1
Length = 513
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 71 DSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFR 122
D WP D ++GN ++S +++ A + +L+A ++G+ GS FR
Sbjct: 95 DEWPADTVRRVAGNAARSLDKVAAVLTTLSALDLEAAIEGLILGSYRFTEFR 146
>sp|A1UIA8|AMPA_MYCSK Probable cytosol aminopeptidase OS=Mycobacterium sp. (strain KMS)
GN=pepA PE=3 SV=1
Length = 513
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 71 DSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFR 122
D WP D ++GN ++S +++ A + +L+A ++G+ GS FR
Sbjct: 95 DEWPADTVRRVAGNAARSLDKVAAVLTTLSALDLEAAIEGLILGSYRFTEFR 146
>sp|A3Q1S2|AMPA_MYCSJ Probable cytosol aminopeptidase OS=Mycobacterium sp. (strain JLS)
GN=pepA PE=3 SV=1
Length = 513
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 71 DSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFR 122
D WP D ++GN ++S +++ A + +L+A ++G+ GS FR
Sbjct: 95 DEWPADTVRRVAGNAARSLDKVAAVLTTLSALDLEAAIEGLILGSYRFTEFR 146
>sp|B0VCA5|RUVC_ACIBY Crossover junction endodeoxyribonuclease RuvC OS=Acinetobacter
baumannii (strain AYE) GN=ruvC PE=3 SV=1
Length = 181
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 92 LDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAY 133
+DAG I + + E+ ++K +F G ++ F PT+AA+++ +
Sbjct: 29 VDAGTIRTETQEMPERLKRIFAGVERIVKFHGPTEAAVEQVF 70
>sp|A3M4U7|RUVC_ACIBT Crossover junction endodeoxyribonuclease RuvC OS=Acinetobacter
baumannii (strain ATCC 17978 / NCDC KC 755) GN=ruvC PE=3
SV=2
Length = 181
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 92 LDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAY 133
+DAG I + + E+ ++K +F G ++ F PT+AA+++ +
Sbjct: 29 VDAGTIRTETQEMPERLKRIFAGVERIVKFHGPTEAAVEQVF 70
>sp|B0VR37|RUVC_ACIBS Crossover junction endodeoxyribonuclease RuvC OS=Acinetobacter
baumannii (strain SDF) GN=ruvC PE=3 SV=1
Length = 181
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 92 LDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAY 133
+DAG I + + E+ ++K +F G ++ F PT+AA+++ +
Sbjct: 29 VDAGTIRTETQEMPERLKRIFAGVERIVKFHGPTEAAVEQVF 70
>sp|B2HYY2|RUVC_ACIBC Crossover junction endodeoxyribonuclease RuvC OS=Acinetobacter
baumannii (strain ACICU) GN=ruvC PE=3 SV=1
Length = 181
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 92 LDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAY 133
+DAG I + + E+ ++K +F G ++ F PT+AA+++ +
Sbjct: 29 VDAGTIRTETQEMPERLKRIFAGVERIVKFHGPTEAAVEQVF 70
>sp|B7I4I7|RUVC_ACIB5 Crossover junction endodeoxyribonuclease RuvC OS=Acinetobacter
baumannii (strain AB0057) GN=ruvC PE=3 SV=1
Length = 181
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 92 LDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAY 133
+DAG I + + E+ ++K +F G ++ F PT+AA+++ +
Sbjct: 29 VDAGTIRTETQEMPERLKRIFAGVERIVKFHGPTEAAVEQVF 70
>sp|B7H3S1|RUVC_ACIB3 Crossover junction endodeoxyribonuclease RuvC OS=Acinetobacter
baumannii (strain AB307-0294) GN=ruvC PE=3 SV=1
Length = 181
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 92 LDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAY 133
+DAG I + + E+ ++K +F G ++ F PT+AA+++ +
Sbjct: 29 VDAGTIRTETQEMPERLKRIFAGVERIVKFHGPTEAAVEQVF 70
>sp|Q6FAQ2|RUVC_ACIAD Crossover junction endodeoxyribonuclease RuvC OS=Acinetobacter sp.
(strain ADP1) GN=ruvC PE=3 SV=2
Length = 181
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 92 LDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAY 133
+DAG I + S ++ ++K +F G ++ F PT+AA+++ +
Sbjct: 29 IDAGTIRTESQDMPERLKRIFAGVERIVKFHGPTQAAVEQVF 70
>sp|Q9D5Z5|MSS51_MOUSE Putative protein MSS51 homolog, mitochondrial OS=Mus musculus
GN=Mss51 PE=2 SV=1
Length = 446
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 89 WERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPT 148
WE GIL+H +L A FH SP L+ +PT L++ Y P L + V +++
Sbjct: 335 WEEQIETGILAHP-DLVAAFHPGFHASPGLMEAWLPTLLLLRD-YEIPTL-ITVYSQQEL 391
Query: 149 ENKLELV 155
E L+++
Sbjct: 392 EASLQIL 398
>sp|Q81ZZ9|PRMA_NITEU Ribosomal protein L11 methyltransferase OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=prmA PE=3 SV=1
Length = 313
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 47 ERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDA 106
ER ++S+D+H+ G T+ + Q F + Q W++ + +L + +D
Sbjct: 24 ERGALSVDVHDAGEGTSQE---------QPLFGEPGAPLDQFWQQAEVTVLLEENANIDE 74
Query: 107 KVKGMFH--GSPALITFRI 123
++G+ G PAL +++
Sbjct: 75 IIQGVAEVIGLPALPEYQL 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,889,034
Number of Sequences: 539616
Number of extensions: 2155485
Number of successful extensions: 4562
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4546
Number of HSP's gapped (non-prelim): 23
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)