BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031359
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 169 bits (427), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 92/113 (81%)
Query: 48 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 107
VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R SGM+KN F+E+V
Sbjct: 16 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQV 75
Query: 108 STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160
S+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 76 SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 53 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 112
P V L Q G LDVR +E++ GH A ++P ++K + +V
Sbjct: 378 PDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP--------LSKLAAHIHDVP---- 425
Query: 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160
+ + V C++G RS +AA+ L G + + GG+ AWR G P E
Sbjct: 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFPVE 473
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 43 LEAVGVPTSV---PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 89
L +G P V P RV + G LDVR + F+ H G++N+P+
Sbjct: 264 LAELGAPERVDLPPERV--RAWREGGVVLDVRPADAFAKRHLAGSLNIPW 311
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 127
LDVR ++ GH GA+ +P V+ S+ K +I V +++
Sbjct: 24 LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 72
Query: 128 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160
A L +AGF ++++ GG AAW+ G PTE
Sbjct: 73 SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 105
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 127
LDVR E++ GH + A++VP+ + E F K+D I V CQSG RS
Sbjct: 391 LDVRNDNEWNNGHLSQAVHVPHGKLL------------ETDLPFNKNDVIYVHCQSGIRS 438
Query: 128 MMAATDLLNAGFAGITDIAGGF 149
+A L + G+ I ++ G+
Sbjct: 439 SIAIGILEHKGYHNIINVNEGY 460
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 108
D+R+ E + GH G IN+PY + + L + +E++
Sbjct: 300 FDLRSKEAYHGGHIEGTINIPYDKNFINQIGWYLNYDQEIN 340
>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|B Chain B, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|C Chain C, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|D Chain D, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
Length = 141
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 127
LDVR ++ GH GA P V+ S+ K +I V +++
Sbjct: 21 LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 69
Query: 128 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160
A L +AGF ++++ GG AAW+ G PTE
Sbjct: 70 SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 102
>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|B Chain B, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|C Chain C, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|D Chain D, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c
Length = 115
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 127
LDVR ++ GH GA P V+ S+ K +I V +++
Sbjct: 26 LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 74
Query: 128 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160
A L +AGF ++++ GG AAW+ G PTE
Sbjct: 75 SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 107
>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|B Chain B, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|C Chain C, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
Length = 106
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 127
LDVR ++ GH GA P V+ S+ K +I V +++
Sbjct: 17 LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 65
Query: 128 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160
A L +AGF ++++ GG AAW+ G PTE
Sbjct: 66 SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 52 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 110
+ V AH+ LQ L D+R P+ F+ GHA A ++ +G+ M N + T
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-TLGAFMRDN-----DFDT- 59
Query: 111 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160
++V C G S AA LL G+ + I GGF AW Q P E
Sbjct: 60 -----PVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW-QRQFPAE 103
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 67 YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRF-RKHDEIIVGCQSG 124
++DVR PE++ H GAIN+P LK V+E ++T K+D + V C +G
Sbjct: 4 WIDVRVPEQYQQEHVQGAINIP------------LKEVKERIATAVPDKNDTVKVYCNAG 51
Query: 125 KRSMMAATDLLNAGFAGITDIAGGF 149
++S A L G+ + + AGG
Sbjct: 52 RQSGQAKEILSEMGYTHVEN-AGGL 75
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSGKR 126
+DVR P E+S H +INVPY + L+F +++ + E+I C SGKR
Sbjct: 44 VDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKR 103
Query: 127 SMMAATDLLNAGFAGITDIAGGFAAWRQNG 156
A + G++ + G W +G
Sbjct: 104 GGEAQKVASSHGYSNTSLYPGSXNDWVSHG 133
>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein
(Tvg0868615) From Thermoplasma Volcanium, Northeast
Structural Genomics Consortium Target Tvr109a
Length = 108
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 64 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS 123
+ LDVR P E G +IN+P S + + K +E R +K+ I C
Sbjct: 17 AYTVLDVREPFELIFGSIANSINIPI-----SELREKWKILE----RDKKYAVI---CAH 64
Query: 124 GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 159
G RS AA + L+ I D+ GG +W + G P
Sbjct: 65 GNRSA-AAVEFLSQLGLNIVDVEGGIQSWIEEGYPV 99
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 19/89 (21%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 124
LDVR P E G GA+N+P V+E+ R K EII+ CQ G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRXHELPKDKEIIIFCQVG 534
Query: 125 KRSMMAATDLLNAGFAGITDIAGGFAAWR 153
R +A L+N G+ ++ GG+ ++
Sbjct: 535 LRGNVAYRQLVNNGYRA-RNLIGGYRTYK 562
>pdb|2EG4|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
Length = 230
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 68 LDVRTPEEFSA----------GHATGAINVPY-MYRVGSGMTKNLKFVEEVSTRFRKHDE 116
LDVR+PEEF G G+ N P ++ G+ + L + E
Sbjct: 135 LDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPEGLLERLGL--------QPGQE 186
Query: 117 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 161
+ V C SG RS +A L + G + G W Q GLPTEP
Sbjct: 187 VGVYCHSGARSAVAFFVLRSLGVRA-RNYLGSMHEWLQEGLPTEP 230
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 55 RVAHELLQAGHR--YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 112
+ A++LLQ +DVR P+E A N +M R G + L +
Sbjct: 28 KDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSR---GKLEPLL----AKSGLD 80
Query: 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 159
++V C++ R+ +A L GF I + GG W + GLP+
Sbjct: 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPS 127
>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
Length = 108
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 52 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 110
+ V AH+ LQ L D+R P+ F+ GHA A ++ +G+ M N + T
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-TLGAFMRDN-----DFDT- 59
Query: 111 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160
++V G S AA LL G+ + I GGF AW Q P E
Sbjct: 60 -----PVMVMXYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW-QRQFPAE 103
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 40.0 bits (92), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 60 LLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK---HDE 116
+++ G +DVR P E G G+IN+P ++E+ R + +
Sbjct: 499 IVENGGYLIDVREPNELKQGXIKGSINIP---------------LDELRDRLEEVPVDKD 543
Query: 117 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149
I + CQ G R +AA L G+ + ++ GGF
Sbjct: 544 IYITCQLGXRGYVAARXLXEKGYK-VKNVDGGF 575
>pdb|2HHG|A Chain A, Structure Of Protein Of Unknown Function Rpa3614, Possible
Tyrosine Phosphatase, From Rhodopseudomonas Palustris
Cga009
Length = 139
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 111 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160
F++ + + C G RS +AA + G + I GGF AWR G P E
Sbjct: 83 FQEDKKFVFYCAGGLRSALAAKTAQDXGLKPVAHIEGGFGAWRDAGGPIE 132
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 124
LDVR P E G GA+N+P V+E+ R K EII+ Q G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRMHELPKDKEIIIFSQVG 534
Query: 125 KRSMMAATDLLNAGFAGITDIAGGFAAWR 153
R +A L+N G+ ++ GG+ ++
Sbjct: 535 LRGNVAYRQLVNNGYRA-RNLIGGYRTYK 562
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FRKHDEIIVGCQSG 124
LDVR P E G GA+N+P V+E+ R K EII+ Q G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRXHELPKDKEIIIFSQVG 534
Query: 125 KRSMMAATDLLNAGFAGITDIAGGFAAWR 153
R +A L+N G+ ++ GG+ ++
Sbjct: 535 LRGNVAYRQLVNNGYRA-RNLIGGYRTYK 562
>pdb|2EG3|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
pdb|2EG3|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
pdb|2EG4|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
Length = 230
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
Query: 68 LDVRTPEEFSA----------GHATGAINVPY-MYRVGSGMTKNLKFVEEVSTRFRKHDE 116
LDVR+PEEF G G+ N P ++ G+ + L + E
Sbjct: 135 LDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPEGLLERLGL--------QPGQE 186
Query: 117 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 161
+ V SG RS +A L + G + G W Q GLPTEP
Sbjct: 187 VGVYXHSGARSAVAFFVLRSLGVRA-RNYLGSMHEWLQEGLPTEP 230
>pdb|1H4K|X Chain X, Sulfurtransferase From Azotobacter Vinelandii In Complex
With Hypophosphite
pdb|1H4M|X Chain X, Sulfurtransferase From Azotobacter Vinelandii In Complex
With Phosphate
Length = 271
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 69 DVRTPEEF--------SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-----HD 115
D R+P+E+ GH GA+N + + ++ L+ +++ R +
Sbjct: 167 DARSPQEYRGEKVLAAKGGHIPGAVN--FEWTAAMDPSRALRIRTDIAGRLEELGITPDK 224
Query: 116 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 152
EI+ CQ+ RS + G+ + AG + W
Sbjct: 225 EIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEW 261
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 68 LDVRTPEEFSAGHATGAINVP 88
LDVRTPEE+ AGH G+ + P
Sbjct: 286 LDVRTPEEYEAGHLPGSRSTP 306
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 69 DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK-RS 127
DVR + F+ H A N+P + E+ R + D I G+ +
Sbjct: 28 DVREEDPFAQAHPLFAANLPLS-----------RLELEIHARVPRRDTPITVYDDGEGLA 76
Query: 128 MMAATDLLNAGFAGITDIAGGFAAWRQNG 156
+AA L + G++ + + GG + WR G
Sbjct: 77 PVAAQRLHDLGYSDVALLDGGLSGWRNAG 105
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 68 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 127
LD R +E+ G I+VP G L+ V E++ R +IV C RS
Sbjct: 150 LDARRFDEYQTXSIPGGISVP-------GAELVLR-VAELAPDPRTR--VIVNCAGRTRS 199
Query: 128 MMAATDLLNAGF 139
++ LLNAG
Sbjct: 200 IIGTQSLLNAGI 211
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 53 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 112
P +A L + G R LD ++ H GA V + LK E R
Sbjct: 381 PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWV---------LRSQLKQALE---RLG 428
Query: 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160
+ ++ C S + A ++ + + GG +AW GLPTE
Sbjct: 429 TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTE 476
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 22/110 (20%)
Query: 67 YLDVRTPEEFSAGHATGAINVPY-----------MYRVGSGMTKNLKFVEEVSTRFR--- 112
++DVRT E+ H AIN P +Y+ K + VS + +
Sbjct: 20 FVDVRTEGEYEEDHILNAINXPLFKNNEHNEVGTIYKXQGKHEAIQKGFDYVSYKLKDIY 79
Query: 113 --------KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 154
+D I++ C G + +LL++ + + GG+ A+R
Sbjct: 80 LQAAELALNYDNIVIYCARGGXRSGSIVNLLSSLGVNVYQLEGGYKAYRN 129
>pdb|3HWI|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
pdb|3HWI|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
Length = 298
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 23/81 (28%)
Query: 68 LDVRTPEEFSA----------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 111
+DVR+P+EFS GH GAINVP+ T K EE++ +
Sbjct: 182 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT--FKSDEELAKLY 239
Query: 112 -----RKHDEIIVGCQSGKRS 127
E I C+ G+RS
Sbjct: 240 ADAGLDNSKETIAYCRIGERS 260
>pdb|3AAX|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
pdb|3AAX|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
Length = 277
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 23/81 (28%)
Query: 68 LDVRTPEEFSA----------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 111
+DVR+P+EFS GH GAINVP+ T K EE++ +
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT--FKSDEELAKLY 218
Query: 112 -----RKHDEIIVGCQSGKRS 127
E I C+ G+RS
Sbjct: 219 ADAGLDNSKETIAYCRIGERS 239
>pdb|2FSX|A Chain A, Crystal Structure Of Rv0390 From M. Tuberculosis
Length = 148
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 87 VPYMYRVGSGMTKNLKFVEEVSTRF----RKHDE-IIVGCQSGKRSMMAATDLLNA---- 137
V Y+ S T N F+ E+ R +H+ +I C+SG RS+ AA A
Sbjct: 48 VVYVEWATSDGTHNDNFLAELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITP 107
Query: 138 ------GFAGITDIAG--GFAAWRQNGLP 158
GF G D G G WR GLP
Sbjct: 108 AYNVLDGFEGHLDAEGHRGATGWRAVGLP 136
>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
Length = 280
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 79 GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF----RKHDE-IIVGCQSGKRSMMAATD 133
GH GA+NVP+ V G LK +E+ F +D+ IIV SG + AA
Sbjct: 193 GHIPGALNVPWTELVREG---ELKTTDELDAIFFGRGVSYDKPIIVSXGSG---VTAAVV 246
Query: 134 LLNAGFAGITDIAGGFAAWRQNG----LPTEP 161
LL + ++ AW + G LP EP
Sbjct: 247 LLALATLDVPNVKLYDGAWSEWGARADLPVEP 278
>pdb|3AAY|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
pdb|3AAY|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
Length = 277
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 16/38 (42%)
Query: 68 LDVRTPEEFSA----------------GHATGAINVPY 89
+DVR+P+EFS GH GAINVP+
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPW 198
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 27.3 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 102 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAG 138
K VEE+ R++K ++VG S ++S + ++ L G
Sbjct: 462 KIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG 498
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 27.3 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 102 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAG 138
K VEE+ R++K ++VG S ++S + ++ L G
Sbjct: 462 KIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG 498
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 57 AHELLQAGHRYLDVRTPEE-FSAG 79
A ELL A HR LD+R P + +SA
Sbjct: 59 AEELLAAPHRLLDIRDPSQAYSAA 82
>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|B Chain B, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|C Chain C, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
Length = 481
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 84 AINVPY-MYRVGSGMTKNLKFVEEVS 108
++N P MY G GM +LK+VE VS
Sbjct: 93 SVNTPTKMYGRGKGMAPDLKYVESVS 118
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe)
Length = 316
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 57 AHELLQAGHRYLDVRTPEE-FSAG 79
A ELL A HR LD+R P + +SA
Sbjct: 59 AEELLAAPHRLLDIRDPSQAYSAA 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,552,060
Number of Sequences: 62578
Number of extensions: 170265
Number of successful extensions: 482
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 38
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)