Query 031359
Match_columns 161
No_of_seqs 221 out of 1953
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 12:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02160 thiosulfate sulfurtra 99.9 1.8E-26 3.9E-31 158.8 12.6 113 49-161 14-128 (136)
2 KOG1530 Rhodanese-related sulf 99.9 1.7E-26 3.6E-31 153.1 10.7 114 47-160 20-135 (136)
3 cd01527 RHOD_YgaP Member of th 99.9 7.9E-26 1.7E-30 147.5 10.8 98 50-159 2-99 (99)
4 cd01533 4RHOD_Repeat_2 Member 99.9 1.6E-25 3.5E-30 148.6 12.0 98 47-156 7-109 (109)
5 PRK00162 glpE thiosulfate sulf 99.9 3.8E-25 8.2E-30 146.6 12.2 101 48-160 3-104 (108)
6 cd01518 RHOD_YceA Member of th 99.9 5.3E-25 1.2E-29 144.1 8.3 98 51-154 3-101 (101)
7 cd01524 RHOD_Pyr_redox Member 99.9 4.5E-24 9.8E-29 137.0 10.8 89 52-153 1-89 (90)
8 cd01521 RHOD_PspE2 Member of t 99.9 6.2E-24 1.4E-28 141.2 11.5 98 49-159 7-110 (110)
9 PRK11493 sseA 3-mercaptopyruva 99.9 4.1E-24 8.8E-29 163.5 11.4 139 23-161 116-279 (281)
10 cd01526 RHOD_ThiF Member of th 99.9 9.3E-24 2E-28 142.8 10.8 111 47-159 5-118 (122)
11 cd01523 RHOD_Lact_B Member of 99.9 5.4E-24 1.2E-28 139.1 9.0 97 52-153 1-99 (100)
12 cd01520 RHOD_YbbB Member of th 99.9 1.1E-23 2.3E-28 143.7 10.6 102 52-154 1-126 (128)
13 cd01534 4RHOD_Repeat_3 Member 99.9 1.6E-23 3.5E-28 135.6 10.3 90 52-154 1-95 (95)
14 cd01528 RHOD_2 Member of the R 99.9 2.3E-23 5.1E-28 136.3 10.9 92 52-155 2-99 (101)
15 cd01519 RHOD_HSP67B2 Member of 99.9 1.2E-23 2.5E-28 138.7 9.5 100 53-153 2-105 (106)
16 cd01535 4RHOD_Repeat_4 Member 99.9 2.4E-23 5.3E-28 144.6 11.0 92 58-161 3-96 (145)
17 cd01444 GlpE_ST GlpE sulfurtra 99.9 3.2E-23 6.9E-28 134.2 10.8 90 52-153 2-95 (96)
18 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 6.8E-23 1.5E-27 144.8 13.2 111 48-159 34-162 (162)
19 cd01447 Polysulfide_ST Polysul 99.9 2.2E-23 4.8E-28 136.6 9.9 101 52-156 1-103 (103)
20 PLN02723 3-mercaptopyruvate su 99.9 2.6E-23 5.7E-28 161.5 11.9 110 52-161 192-317 (320)
21 COG2897 SseA Rhodanese-related 99.9 3.1E-23 6.8E-28 157.1 11.7 141 21-161 117-282 (285)
22 cd01448 TST_Repeat_1 Thiosulfa 99.9 8.3E-23 1.8E-27 138.0 11.4 105 52-156 2-122 (122)
23 cd01525 RHOD_Kc Member of the 99.9 6.3E-23 1.4E-27 135.0 9.2 99 52-153 1-104 (105)
24 cd01449 TST_Repeat_2 Thiosulfa 99.9 1.1E-22 2.4E-27 136.5 10.1 103 52-154 1-118 (118)
25 cd01522 RHOD_1 Member of the R 99.9 9.8E-23 2.1E-27 136.9 9.6 102 52-155 1-105 (117)
26 smart00450 RHOD Rhodanese Homo 99.9 1.8E-22 3.9E-27 130.5 10.5 96 63-158 3-100 (100)
27 cd01530 Cdc25 Cdc25 phosphatas 99.9 2E-22 4.4E-27 136.1 10.3 92 51-153 3-120 (121)
28 cd01529 4RHOD_Repeats Member o 99.9 2.3E-22 5E-27 130.4 9.0 87 62-154 10-96 (96)
29 PRK09629 bifunctional thiosulf 99.9 3.9E-22 8.5E-27 165.7 12.6 140 22-161 109-271 (610)
30 PF00581 Rhodanese: Rhodanese- 99.9 4.5E-22 9.8E-27 131.9 10.3 103 53-155 1-113 (113)
31 PRK08762 molybdopterin biosynt 99.9 5.9E-22 1.3E-26 157.1 12.0 100 50-161 3-104 (376)
32 cd01445 TST_Repeats Thiosulfat 99.9 1.5E-21 3.2E-26 134.6 11.3 102 52-153 1-137 (138)
33 cd01532 4RHOD_Repeat_1 Member 99.9 1.1E-21 2.5E-26 126.3 8.9 80 63-154 9-92 (92)
34 PRK11493 sseA 3-mercaptopyruva 99.9 2.6E-21 5.6E-26 148.0 12.2 112 50-161 5-135 (281)
35 PRK09629 bifunctional thiosulf 99.9 5.6E-21 1.2E-25 158.9 12.7 113 49-161 8-129 (610)
36 PRK07878 molybdopterin biosynt 99.9 1.2E-20 2.5E-25 150.3 13.3 134 11-158 252-387 (392)
37 COG0607 PspE Rhodanese-related 99.8 5.8E-21 1.3E-25 126.3 8.9 87 62-160 18-107 (110)
38 cd00158 RHOD Rhodanese Homolog 99.8 5.6E-21 1.2E-25 121.5 8.4 80 62-153 8-89 (89)
39 TIGR02981 phageshock_pspE phag 99.8 1E-20 2.2E-25 123.7 9.7 79 63-154 17-97 (101)
40 PLN02723 3-mercaptopyruvate su 99.8 1.4E-20 3E-25 146.3 12.1 112 50-161 22-151 (320)
41 PRK01415 hypothetical protein; 99.8 1.4E-20 3E-25 140.3 10.3 101 50-156 112-213 (247)
42 PRK10287 thiosulfate:cyanide s 99.8 1.9E-20 4.2E-25 122.9 9.5 78 64-154 20-99 (104)
43 PRK05320 rhodanese superfamily 99.8 2.4E-20 5.1E-25 140.6 10.5 101 49-155 109-216 (257)
44 cd01531 Acr2p Eukaryotic arsen 99.8 2.9E-20 6.2E-25 124.1 8.8 97 50-155 2-112 (113)
45 PRK07411 hypothetical protein; 99.8 1.9E-19 4.2E-24 143.1 12.8 105 47-159 279-386 (390)
46 PRK00142 putative rhodanese-re 99.8 2.3E-19 4.9E-24 138.8 11.7 101 49-155 111-212 (314)
47 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 1.3E-19 2.7E-24 121.0 7.7 94 51-153 3-112 (113)
48 PRK11784 tRNA 2-selenouridine 99.8 5.7E-19 1.2E-23 138.0 10.6 104 53-157 4-131 (345)
49 COG2897 SseA Rhodanese-related 99.8 1.5E-18 3.3E-23 131.7 11.8 114 48-161 9-138 (285)
50 PRK05597 molybdopterin biosynt 99.8 1.2E-18 2.5E-23 137.2 10.8 93 49-154 260-354 (355)
51 TIGR03167 tRNA_sel_U_synt tRNA 99.8 1.8E-18 3.8E-23 133.5 9.9 95 64-159 2-119 (311)
52 cd01446 DSP_MapKP N-terminal r 99.8 9.7E-18 2.1E-22 114.7 9.9 101 52-154 2-126 (132)
53 PRK05600 thiamine biosynthesis 99.7 6.3E-17 1.4E-21 127.9 8.6 93 51-150 272-369 (370)
54 KOG1529 Mercaptopyruvate sulfu 99.6 3.4E-15 7.4E-20 111.7 8.6 134 21-155 115-276 (286)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.6 7E-15 1.5E-19 120.0 9.6 77 59-147 402-482 (482)
56 KOG2017 Molybdopterin synthase 99.5 4E-14 8.6E-19 108.4 7.6 124 29-159 295-423 (427)
57 COG1054 Predicted sulfurtransf 99.5 5.9E-14 1.3E-18 105.6 5.3 100 50-155 113-213 (308)
58 KOG1529 Mercaptopyruvate sulfu 99.4 2.2E-12 4.7E-17 96.8 10.4 111 51-161 6-136 (286)
59 KOG3772 M-phase inducer phosph 99.4 1.1E-12 2.4E-17 100.2 7.7 98 47-155 153-276 (325)
60 COG5105 MIH1 Mitotic inducer, 98.8 1.8E-08 3.9E-13 76.9 7.1 97 47-154 239-357 (427)
61 COG2603 Predicted ATPase [Gene 97.8 4.5E-05 9.7E-10 58.0 5.1 100 53-153 4-127 (334)
62 PF04273 DUF442: Putative phos 97.6 0.00088 1.9E-08 44.3 8.2 78 50-134 13-106 (110)
63 TIGR01244 conserved hypothetic 97.5 0.0011 2.4E-08 45.4 8.4 86 50-140 13-113 (135)
64 KOG1093 Predicted protein kina 96.8 0.00065 1.4E-08 56.2 1.8 94 50-154 622-720 (725)
65 PRK00142 putative rhodanese-re 96.6 0.00027 5.8E-09 55.2 -1.4 84 51-143 15-105 (314)
66 TIGR03167 tRNA_sel_U_synt tRNA 96.3 0.0093 2E-07 46.5 5.1 94 24-126 103-208 (311)
67 PF13350 Y_phosphatase3: Tyros 95.7 0.17 3.6E-06 35.6 9.3 95 47-141 25-153 (164)
68 KOG3636 Uncharacterized conser 95.7 0.032 6.9E-07 45.3 6.0 82 65-153 327-427 (669)
69 COG3453 Uncharacterized protei 94.2 0.52 1.1E-05 31.6 7.4 82 47-134 11-107 (130)
70 KOG1717 Dual specificity phosp 93.2 0.22 4.7E-06 38.0 4.9 99 52-155 6-124 (343)
71 PLN02727 NAD kinase 93.1 0.6 1.3E-05 41.5 8.0 81 50-135 267-364 (986)
72 smart00195 DSPc Dual specifici 91.3 1.4 3E-05 29.7 6.8 80 57-140 19-107 (138)
73 cd00127 DSPc Dual specificity 90.3 1.7 3.7E-05 29.1 6.6 80 57-139 20-109 (139)
74 PRK08762 molybdopterin biosynt 86.9 1.3 2.8E-05 35.5 4.7 35 114-149 135-169 (376)
75 PRK11784 tRNA 2-selenouridine 85.2 3.3 7.2E-05 32.9 6.2 60 24-83 117-187 (345)
76 PF03853 YjeF_N: YjeF-related 84.7 4.1 8.9E-05 28.8 5.9 32 112-144 23-57 (169)
77 PF09992 DUF2233: Predicted pe 81.6 2 4.3E-05 30.2 3.3 40 112-151 98-142 (170)
78 COG2453 CDC14 Predicted protei 81.5 2.8 6.1E-05 30.0 4.0 29 111-139 102-133 (180)
79 KOG0333 U5 snRNP-like RNA heli 80.7 3.8 8.2E-05 34.5 4.9 47 102-149 503-551 (673)
80 PF00782 DSPc: Dual specificit 79.5 6.4 0.00014 26.1 5.1 80 60-139 14-101 (133)
81 PF05706 CDKN3: Cyclin-depende 78.9 6.4 0.00014 28.0 5.0 84 55-138 62-159 (168)
82 PRK12361 hypothetical protein; 78.6 7.5 0.00016 32.8 6.3 79 53-135 109-198 (547)
83 PTZ00393 protein tyrosine phos 78.1 7.1 0.00015 29.4 5.3 81 55-140 107-198 (241)
84 PTZ00242 protein tyrosine phos 78.0 15 0.00031 26.0 6.7 27 112-138 96-124 (166)
85 COG2519 GCD14 tRNA(1-methylade 77.6 6.8 0.00015 29.8 5.1 46 99-144 173-218 (256)
86 PLN03050 pyridoxine (pyridoxam 76.5 5.6 0.00012 30.1 4.5 30 115-145 61-93 (246)
87 COG0062 Uncharacterized conser 76.1 13 0.00028 27.3 6.2 37 107-144 40-81 (203)
88 TIGR00197 yjeF_nterm yjeF N-te 75.8 11 0.00024 27.6 5.8 35 110-145 41-78 (205)
89 PRK10565 putative carbohydrate 75.4 9.7 0.00021 32.0 6.0 34 111-145 57-93 (508)
90 PLN03049 pyridoxine (pyridoxam 74.9 10 0.00023 31.4 6.0 30 115-145 60-92 (462)
91 TIGR01587 cas3_core CRISPR-ass 74.9 8.8 0.00019 30.1 5.5 47 103-149 211-258 (358)
92 COG1891 Uncharacterized protei 73.8 26 0.00057 25.3 6.9 34 51-89 7-40 (235)
93 COG2518 Pcm Protein-L-isoaspar 73.6 6.1 0.00013 29.2 3.9 26 130-155 110-136 (209)
94 PF01488 Shikimate_DH: Shikima 73.2 9.9 0.00021 25.7 4.7 35 114-149 12-46 (135)
95 PLN02918 pyridoxine (pyridoxam 72.6 13 0.00027 31.6 6.0 30 115-145 136-168 (544)
96 PF03162 Y_phosphatase2: Tyros 71.6 7.9 0.00017 27.3 4.0 76 65-140 34-119 (164)
97 TIGR00640 acid_CoA_mut_C methy 71.2 29 0.00063 23.5 6.8 15 57-71 22-37 (132)
98 TIGR00853 pts-lac PTS system, 70.6 7.6 0.00016 24.7 3.5 37 114-151 3-43 (95)
99 COG2185 Sbm Methylmalonyl-CoA 70.5 23 0.00049 24.5 5.9 39 111-149 60-102 (143)
100 cd00079 HELICc Helicase superf 69.8 22 0.00047 22.9 5.8 36 113-149 27-62 (131)
101 PRK12898 secA preprotein trans 67.3 27 0.00058 30.4 6.9 37 113-150 472-508 (656)
102 TIGR00614 recQ_fam ATP-depende 66.8 15 0.00033 30.3 5.3 37 113-150 225-261 (470)
103 PRK09590 celB cellobiose phosp 65.6 9.8 0.00021 24.7 3.2 35 116-151 3-41 (104)
104 PF02590 SPOUT_MTase: Predicte 65.4 24 0.00051 24.7 5.3 48 105-152 58-110 (155)
105 cd02071 MM_CoA_mut_B12_BD meth 65.3 26 0.00056 23.1 5.4 10 63-72 26-35 (122)
106 TIGR00201 comF comF family pro 64.7 15 0.00033 26.4 4.4 33 113-145 151-186 (190)
107 TIGR02689 ars_reduc_gluta arse 64.2 16 0.00035 24.3 4.2 34 116-149 2-36 (126)
108 PTZ00110 helicase; Provisional 62.6 22 0.00049 30.0 5.7 37 113-150 376-412 (545)
109 cd05565 PTS_IIB_lactose PTS_II 62.6 10 0.00022 24.4 2.9 36 116-152 2-41 (99)
110 COG0514 RecQ Superfamily II DN 61.5 12 0.00026 32.1 3.8 37 113-150 229-265 (590)
111 PF00289 CPSase_L_chain: Carba 61.1 14 0.0003 24.2 3.4 29 118-146 5-33 (110)
112 TIGR03372 putres_am_tran putre 61.0 18 0.0004 29.7 4.8 43 111-153 130-177 (442)
113 KOG0352 ATP-dependent DNA heli 61.0 8.4 0.00018 31.8 2.7 42 117-159 258-308 (641)
114 cd05564 PTS_IIB_chitobiose_lic 61.0 12 0.00025 23.8 2.9 35 116-151 1-39 (96)
115 PF02302 PTS_IIB: PTS system, 60.7 14 0.0003 22.7 3.3 25 116-140 1-30 (90)
116 COG0034 PurF Glutamine phospho 60.0 15 0.00032 30.4 4.0 35 113-147 347-384 (470)
117 COG0513 SrmB Superfamily II DN 59.9 27 0.00058 29.3 5.6 34 116-150 275-308 (513)
118 PRK10310 PTS system galactitol 59.7 17 0.00038 23.0 3.6 36 116-152 4-44 (94)
119 KOG0330 ATP-dependent RNA heli 59.7 22 0.00048 29.0 4.7 46 104-151 291-336 (476)
120 PRK13802 bifunctional indole-3 59.5 43 0.00092 29.5 6.8 76 65-142 162-237 (695)
121 PF13344 Hydrolase_6: Haloacid 59.4 32 0.00069 22.0 4.8 36 102-140 21-57 (101)
122 PRK11057 ATP-dependent DNA hel 59.3 16 0.00034 31.4 4.2 37 113-150 235-271 (607)
123 COG4822 CbiK Cobalamin biosynt 59.0 33 0.00071 25.7 5.2 42 103-144 123-172 (265)
124 COG3414 SgaB Phosphotransferas 58.6 18 0.00038 23.1 3.4 26 115-140 2-32 (93)
125 PLN03137 ATP-dependent DNA hel 58.5 23 0.0005 32.9 5.2 36 114-150 680-715 (1195)
126 PF07755 DUF1611: Protein of u 58.3 24 0.00051 27.6 4.7 40 114-154 111-156 (301)
127 PRK05298 excinuclease ABC subu 57.4 21 0.00046 30.9 4.7 47 103-150 435-481 (652)
128 KOG0685 Flavin-containing amin 57.2 23 0.00049 29.6 4.6 35 113-148 20-54 (498)
129 TIGR01389 recQ ATP-dependent D 57.2 29 0.00063 29.6 5.5 36 114-150 224-259 (591)
130 PRK13809 orotate phosphoribosy 57.0 33 0.00072 25.2 5.1 50 111-160 115-173 (206)
131 KOG0572 Glutamine phosphoribos 56.9 19 0.0004 29.3 3.9 32 113-144 355-389 (474)
132 PRK13104 secA preprotein trans 56.6 24 0.00053 31.8 5.0 41 111-152 441-481 (896)
133 PRK07688 thiamine/molybdopteri 56.3 9 0.0002 30.4 2.2 39 49-88 276-322 (339)
134 PRK04837 ATP-dependent RNA hel 56.1 23 0.00049 28.7 4.5 35 114-149 255-289 (423)
135 PF00156 Pribosyltran: Phospho 55.9 29 0.00062 22.5 4.3 32 113-144 87-121 (125)
136 PRK08117 4-aminobutyrate amino 55.8 26 0.00057 28.5 4.9 47 107-153 95-143 (433)
137 PLN02460 indole-3-glycerol-pho 55.1 80 0.0017 25.2 7.2 77 65-142 232-314 (338)
138 PRK00103 rRNA large subunit me 55.0 30 0.00065 24.3 4.4 49 104-152 57-110 (157)
139 PRK11776 ATP-dependent RNA hel 54.8 21 0.00046 29.2 4.2 36 114-150 242-277 (460)
140 KOG0332 ATP-dependent RNA heli 54.8 17 0.00037 29.5 3.4 39 111-151 328-366 (477)
141 PRK13530 arsenate reductase; P 54.6 33 0.00071 23.1 4.5 35 115-149 4-39 (133)
142 PRK09162 hypoxanthine-guanine 54.4 28 0.0006 24.9 4.3 33 113-145 96-131 (181)
143 PF00218 IGPS: Indole-3-glycer 54.4 7.5 0.00016 29.6 1.4 89 52-142 142-235 (254)
144 PRK06917 hypothetical protein; 53.9 34 0.00073 28.1 5.2 50 104-153 80-137 (447)
145 COG0373 HemA Glutamyl-tRNA red 53.7 39 0.00084 27.7 5.4 45 103-149 168-212 (414)
146 PF00899 ThiF: ThiF family; I 53.3 26 0.00057 23.4 3.9 37 115-152 3-39 (135)
147 PRK06148 hypothetical protein; 53.1 27 0.00059 32.0 4.9 46 108-153 673-720 (1013)
148 PF03610 EIIA-man: PTS system 53.0 61 0.0013 21.0 6.3 44 102-147 45-90 (116)
149 cd05567 PTS_IIB_mannitol PTS_I 52.5 21 0.00045 22.0 3.0 25 116-140 2-31 (87)
150 PRK04537 ATP-dependent RNA hel 52.4 25 0.00054 30.0 4.3 37 113-150 256-292 (572)
151 cd00115 LMWPc Substituted upda 52.1 24 0.00052 23.8 3.5 36 116-151 2-39 (141)
152 PRK10499 PTS system N,N'-diace 52.0 23 0.0005 23.0 3.3 26 115-140 4-33 (106)
153 PF02879 PGM_PMM_II: Phosphogl 51.9 42 0.00091 21.2 4.5 30 114-143 21-50 (104)
154 TIGR00631 uvrb excinuclease AB 51.8 36 0.00077 29.7 5.2 47 103-150 431-477 (655)
155 cd00133 PTS_IIB PTS_IIB: subun 51.6 19 0.00041 21.2 2.7 21 116-136 1-22 (84)
156 PF01206 TusA: Sulfurtransfera 51.4 47 0.001 19.3 4.9 40 103-142 16-55 (70)
157 PRK07199 phosphoribosylpyropho 51.2 32 0.00069 26.8 4.5 32 113-144 210-244 (301)
158 COG1157 FliI Flagellar biosynt 51.2 52 0.0011 27.1 5.6 57 97-154 201-267 (441)
159 PF08704 GCD14: tRNA methyltra 50.3 16 0.00036 27.6 2.6 45 102-146 126-171 (247)
160 COG1165 MenD 2-succinyl-6-hydr 50.1 17 0.00037 30.8 2.9 32 112-143 68-99 (566)
161 TIGR00963 secA preprotein tran 50.1 43 0.00094 29.6 5.4 37 112-149 403-439 (745)
162 PRK12906 secA preprotein trans 49.9 48 0.001 29.6 5.7 39 112-151 438-476 (796)
163 PRK11595 DNA utilization prote 49.7 37 0.00081 25.1 4.5 33 113-145 186-221 (227)
164 PRK11192 ATP-dependent RNA hel 49.5 36 0.00077 27.6 4.7 37 113-150 244-280 (434)
165 COG1040 ComFC Predicted amidop 48.8 34 0.00074 25.4 4.1 31 115-145 185-218 (225)
166 TIGR02804 ExbD_2 TonB system t 48.8 76 0.0016 20.9 6.3 44 102-145 72-118 (121)
167 PRK11391 etp phosphotyrosine-p 48.0 29 0.00062 23.8 3.4 37 115-152 3-40 (144)
168 PRK10590 ATP-dependent RNA hel 47.8 32 0.00069 28.3 4.2 36 114-150 245-280 (456)
169 PF13738 Pyr_redox_3: Pyridine 47.6 29 0.00063 24.5 3.6 32 113-146 166-197 (203)
170 TIGR01809 Shik-DH-AROM shikima 47.6 40 0.00087 25.9 4.5 34 113-147 124-157 (282)
171 PRK06916 adenosylmethionine--8 47.0 46 0.001 27.5 5.0 47 107-153 108-162 (460)
172 PRK10126 tyrosine phosphatase; 46.9 30 0.00065 23.7 3.4 37 115-152 3-40 (147)
173 PRK09246 amidophosphoribosyltr 46.8 38 0.00083 28.4 4.5 34 113-146 357-393 (501)
174 PRK13812 orotate phosphoribosy 46.6 62 0.0013 23.0 5.0 50 111-160 104-162 (176)
175 PF14572 Pribosyl_synth: Phosp 46.3 41 0.00088 24.4 4.0 33 113-145 82-117 (184)
176 PRK04923 ribose-phosphate pyro 46.3 45 0.00097 26.3 4.6 32 113-144 216-250 (319)
177 PRK05964 adenosylmethionine--8 46.3 59 0.0013 26.4 5.5 43 111-153 98-148 (423)
178 PRK05639 4-aminobutyrate amino 46.1 45 0.00097 27.6 4.8 38 116-153 114-153 (457)
179 cd05563 PTS_IIB_ascorbate PTS_ 46.1 29 0.00063 21.1 3.0 24 117-140 2-30 (86)
180 TIGR02691 arsC_pI258_fam arsen 46.1 34 0.00073 22.9 3.5 11 129-139 42-52 (129)
181 TIGR00537 hemK_rel_arch HemK-r 45.6 59 0.0013 22.7 4.9 46 103-148 122-167 (179)
182 cd05311 NAD_bind_2_malic_enz N 45.6 48 0.001 24.6 4.5 34 113-147 24-59 (226)
183 PRK03092 ribose-phosphate pyro 45.5 68 0.0015 25.1 5.5 33 113-145 200-235 (304)
184 TIGR00336 pyrE orotate phospho 45.5 57 0.0012 23.0 4.7 50 111-160 105-165 (173)
185 KOG0351 ATP-dependent DNA heli 45.1 31 0.00066 31.4 3.8 47 103-150 474-520 (941)
186 PRK06781 amidophosphoribosyltr 45.1 42 0.00091 28.0 4.5 35 113-147 347-384 (471)
187 KOG0326 ATP-dependent RNA heli 44.6 38 0.00082 27.1 3.8 35 105-140 314-348 (459)
188 PRK09200 preprotein translocas 44.6 60 0.0013 29.0 5.5 38 112-150 426-463 (790)
189 PRK13957 indole-3-glycerol-pho 44.5 1.2E+02 0.0026 23.1 6.4 75 65-142 153-227 (247)
190 PRK13810 orotate phosphoribosy 44.3 74 0.0016 22.9 5.2 51 110-160 118-177 (187)
191 PRK13107 preprotein translocas 44.2 46 0.00099 30.2 4.7 40 112-152 447-486 (908)
192 PRK02458 ribose-phosphate pyro 44.2 45 0.00098 26.3 4.3 32 113-144 217-251 (323)
193 PRK06918 4-aminobutyrate amino 44.0 54 0.0012 26.9 5.0 37 117-153 117-155 (451)
194 COG0394 Wzb Protein-tyrosine-p 43.7 37 0.00081 23.2 3.4 36 115-150 3-39 (139)
195 PF02254 TrkA_N: TrkA-N domain 43.4 50 0.0011 21.0 3.9 20 116-139 23-42 (116)
196 PRK00615 glutamate-1-semialdeh 43.3 50 0.0011 27.1 4.6 49 105-153 100-150 (433)
197 cd03422 YedF YedF is a bacteri 43.3 69 0.0015 18.8 5.2 38 103-140 15-52 (69)
198 PF02863 Arg_repressor_C: Argi 43.2 43 0.00093 19.9 3.3 25 112-136 45-69 (70)
199 COG0462 PrsA Phosphoribosylpyr 43.0 57 0.0012 25.7 4.6 31 114-144 214-247 (314)
200 PF13399 LytR_C: LytR cell env 43.0 58 0.0013 20.0 4.0 26 116-141 5-32 (90)
201 PRK04914 ATP-dependent helicas 43.0 54 0.0012 30.0 5.1 36 114-150 493-529 (956)
202 PRK07481 hypothetical protein; 42.9 51 0.0011 27.1 4.6 40 115-154 104-151 (449)
203 PRK05922 type III secretion sy 42.7 1E+02 0.0023 25.4 6.3 53 102-155 200-262 (434)
204 PLN02482 glutamate-1-semialdeh 42.7 53 0.0012 27.3 4.7 38 116-153 156-195 (474)
205 PRK12549 shikimate 5-dehydroge 42.5 57 0.0012 25.1 4.6 33 114-147 127-159 (284)
206 PF02780 Transketolase_C: Tran 42.4 55 0.0012 21.4 4.0 28 113-140 8-37 (124)
207 PRK05965 hypothetical protein; 42.3 67 0.0014 26.5 5.3 48 106-153 98-153 (459)
208 KOG0331 ATP-dependent RNA heli 42.2 63 0.0014 27.4 5.0 37 113-150 340-376 (519)
209 PRK07986 adenosylmethionine--8 42.1 63 0.0014 26.4 5.1 43 111-153 99-148 (428)
210 TIGR02356 adenyl_thiF thiazole 42.0 65 0.0014 23.3 4.7 34 114-148 21-54 (202)
211 PRK13360 omega amino acid--pyr 41.8 57 0.0012 26.8 4.7 43 111-153 102-152 (442)
212 cd05568 PTS_IIB_bgl_like PTS_I 41.7 42 0.00092 20.0 3.2 22 116-137 2-24 (85)
213 PRK07482 hypothetical protein; 41.5 66 0.0014 26.6 5.1 47 107-153 103-157 (461)
214 COG0134 TrpC Indole-3-glycerol 41.5 1.3E+02 0.0029 22.9 6.3 75 65-141 158-232 (254)
215 PF04122 CW_binding_2: Putativ 41.4 40 0.00086 20.9 3.1 35 113-150 49-83 (92)
216 PRK02269 ribose-phosphate pyro 41.4 54 0.0012 25.8 4.4 32 113-144 216-250 (320)
217 PRK08360 4-aminobutyrate amino 41.2 58 0.0013 26.8 4.7 47 107-153 93-141 (443)
218 PRK07678 aminotransferase; Val 41.2 50 0.0011 27.2 4.4 38 116-153 106-151 (451)
219 KOG0029 Amine oxidase [Seconda 41.0 52 0.0011 27.7 4.4 31 114-146 15-45 (501)
220 TIGR03714 secA2 accessory Sec 41.0 82 0.0018 28.1 5.7 39 112-151 422-460 (762)
221 PRK06062 hypothetical protein; 41.0 57 0.0012 26.9 4.7 43 111-153 108-152 (451)
222 COG1576 Uncharacterized conser 40.6 1.2E+02 0.0026 21.4 5.4 48 103-151 56-108 (155)
223 PRK14027 quinate/shikimate deh 40.1 65 0.0014 24.8 4.6 33 114-147 127-159 (283)
224 cd05566 PTS_IIB_galactitol PTS 40.1 43 0.00093 20.5 3.1 24 116-139 2-30 (89)
225 PTZ00424 helicase 45; Provisio 40.0 55 0.0012 26.0 4.4 36 114-150 267-302 (401)
226 PRK01297 ATP-dependent RNA hel 39.9 55 0.0012 27.0 4.5 37 114-151 335-371 (475)
227 PRK12560 adenine phosphoribosy 39.7 1.1E+02 0.0024 22.0 5.5 49 111-159 111-170 (187)
228 PRK07631 amidophosphoribosyltr 39.5 51 0.0011 27.6 4.1 34 113-146 347-383 (475)
229 PRK09694 helicase Cas3; Provis 39.4 1.1E+02 0.0024 27.8 6.4 49 102-150 548-598 (878)
230 PF14606 Lipase_GDSL_3: GDSL-l 39.3 68 0.0015 23.1 4.3 19 129-147 126-144 (178)
231 PF08503 DapH_N: Tetrahydrodip 39.2 7.7 0.00017 24.2 -0.5 51 102-153 4-54 (83)
232 PRK08341 amidophosphoribosyltr 38.9 54 0.0012 27.1 4.1 33 113-145 333-368 (442)
233 COG4992 ArgD Ornithine/acetylo 38.8 58 0.0013 26.6 4.2 47 104-150 89-140 (404)
234 PRK11018 hypothetical protein; 38.7 90 0.002 18.9 5.1 38 103-140 24-61 (78)
235 PRK08593 4-aminobutyrate amino 38.6 59 0.0013 26.7 4.4 38 116-153 104-143 (445)
236 TIGR00709 dat 2,4-diaminobutyr 38.5 67 0.0015 26.3 4.7 39 115-153 102-142 (442)
237 PRK07030 adenosylmethionine--8 38.5 75 0.0016 26.3 5.0 43 111-153 103-153 (466)
238 PRK09426 methylmalonyl-CoA mut 38.4 57 0.0012 28.8 4.4 37 113-149 632-672 (714)
239 PRK13940 glutamyl-tRNA reducta 38.4 58 0.0013 26.7 4.2 33 114-147 181-213 (414)
240 smart00012 PTPc_DSPc Protein t 38.2 80 0.0017 19.3 4.2 16 113-128 38-54 (105)
241 smart00404 PTPc_motif Protein 38.2 80 0.0017 19.3 4.2 16 113-128 38-54 (105)
242 COG0162 TyrS Tyrosyl-tRNA synt 38.0 50 0.0011 27.0 3.8 39 116-155 32-80 (401)
243 TIGR01744 XPRTase xanthine pho 37.8 1E+02 0.0022 22.3 5.1 50 111-160 114-173 (191)
244 PRK07349 amidophosphoribosyltr 37.6 61 0.0013 27.3 4.3 33 113-145 376-411 (500)
245 COG0169 AroE Shikimate 5-dehyd 37.6 77 0.0017 24.6 4.6 32 115-147 127-158 (283)
246 PRK06541 hypothetical protein; 37.6 72 0.0016 26.4 4.8 38 116-153 113-158 (460)
247 PRK06082 4-aminobutyrate amino 37.5 71 0.0015 26.4 4.7 38 116-153 131-170 (459)
248 PRK12904 preprotein translocas 37.5 80 0.0017 28.4 5.2 37 112-149 428-464 (830)
249 PRK11522 putrescine--2-oxoglut 37.5 63 0.0014 26.7 4.4 43 111-153 137-184 (459)
250 PRK13811 orotate phosphoribosy 37.2 1E+02 0.0022 21.7 5.0 48 113-160 103-159 (170)
251 PF13580 SIS_2: SIS domain; PD 37.1 1.2E+02 0.0025 20.4 5.1 40 101-140 89-132 (138)
252 PRK05793 amidophosphoribosyltr 37.0 65 0.0014 26.8 4.4 33 113-145 352-387 (469)
253 PRK08297 L-lysine aminotransfe 37.0 84 0.0018 25.8 5.1 41 113-153 108-162 (443)
254 PRK06149 hypothetical protein; 37.0 65 0.0014 29.5 4.7 43 111-153 637-681 (972)
255 PRK07483 hypothetical protein; 36.9 87 0.0019 25.7 5.1 43 111-153 86-136 (443)
256 TIGR00246 tRNA_RlmH_YbeA rRNA 36.9 73 0.0016 22.2 4.0 47 104-152 56-107 (153)
257 PRK08525 amidophosphoribosyltr 36.8 65 0.0014 26.6 4.4 33 113-145 339-374 (445)
258 PRK00121 trmB tRNA (guanine-N( 36.8 1.1E+02 0.0023 22.1 5.1 48 101-149 136-183 (202)
259 TIGR03158 cas3_cyano CRISPR-as 36.8 68 0.0015 25.5 4.4 39 113-151 271-310 (357)
260 PRK11634 ATP-dependent RNA hel 36.4 61 0.0013 28.1 4.3 35 114-149 245-279 (629)
261 PRK07036 hypothetical protein; 36.2 90 0.0019 25.9 5.1 43 111-153 108-158 (466)
262 PF00070 Pyr_redox: Pyridine n 36.0 96 0.0021 18.4 4.2 23 122-145 6-28 (80)
263 cd03420 SirA_RHOD_Pry_redox Si 36.0 93 0.002 18.2 5.1 39 103-141 15-53 (69)
264 PRK00553 ribose-phosphate pyro 35.9 78 0.0017 25.1 4.5 32 113-144 217-251 (332)
265 PRK00934 ribose-phosphate pyro 35.9 77 0.0017 24.4 4.4 32 113-144 203-237 (285)
266 PRK12550 shikimate 5-dehydroge 35.8 92 0.002 23.9 4.8 35 112-147 120-154 (272)
267 PF14566 PTPlike_phytase: Inos 35.6 1.1E+02 0.0024 21.0 4.8 28 97-124 104-134 (149)
268 TIGR01203 HGPRTase hypoxanthin 35.5 89 0.0019 21.9 4.4 32 113-144 83-117 (166)
269 KOG2015 NEDD8-activating compl 35.5 1E+02 0.0022 24.8 4.9 53 82-147 20-72 (422)
270 PRK07046 aminotransferase; Val 35.4 35 0.00076 28.1 2.6 36 117-152 132-169 (453)
271 TIGR00700 GABAtrnsam 4-aminobu 35.4 87 0.0019 25.4 4.9 37 116-152 95-133 (420)
272 TIGR01090 apt adenine phosphor 35.3 87 0.0019 21.9 4.3 32 112-143 107-141 (169)
273 PRK06388 amidophosphoribosyltr 35.1 67 0.0014 26.9 4.2 33 113-145 355-390 (474)
274 COG1440 CelA Phosphotransferas 34.7 59 0.0013 21.1 3.0 21 115-135 2-22 (102)
275 TIGR02190 GlrX-dom Glutaredoxi 34.6 1E+02 0.0022 18.3 4.2 28 113-140 6-34 (79)
276 PLN02541 uracil phosphoribosyl 34.5 77 0.0017 24.0 4.1 31 114-144 157-192 (244)
277 TIGR02354 thiF_fam2 thiamine b 34.4 78 0.0017 23.0 4.1 33 115-148 22-54 (200)
278 PRK05690 molybdopterin biosynt 34.4 97 0.0021 23.2 4.7 35 114-149 32-66 (245)
279 COG1204 Superfamily II helicas 34.3 1.8E+02 0.0038 26.1 6.8 85 52-136 191-275 (766)
280 PRK00676 hemA glutamyl-tRNA re 34.3 88 0.0019 24.9 4.5 33 114-147 174-206 (338)
281 PRK12749 quinate/shikimate deh 34.1 94 0.002 24.0 4.6 34 113-147 123-156 (288)
282 PF09554 RE_HaeII: HaeII restr 34.0 81 0.0018 24.4 4.1 41 98-140 237-277 (338)
283 PLN00203 glutamyl-tRNA reducta 33.9 1E+02 0.0022 26.2 5.0 33 114-147 266-298 (519)
284 cd01300 YtcJ_like YtcJ_like me 33.8 81 0.0018 25.9 4.5 34 107-140 105-138 (479)
285 PRK05769 4-aminobutyrate amino 33.4 98 0.0021 25.4 4.9 38 116-153 116-155 (441)
286 PRK06105 aminotransferase; Pro 33.4 1.1E+02 0.0024 25.3 5.2 48 107-154 101-156 (460)
287 TIGR02189 GlrX-like_plant Glut 33.3 93 0.002 19.7 3.9 27 114-140 7-34 (99)
288 PRK00129 upp uracil phosphorib 33.3 99 0.0021 22.6 4.5 31 114-144 124-157 (209)
289 PLN02369 ribose-phosphate pyro 33.3 90 0.002 24.3 4.4 34 113-146 201-237 (302)
290 PRK09427 bifunctional indole-3 33.2 1.8E+02 0.0039 24.2 6.4 75 65-142 161-235 (454)
291 PRK09754 phenylpropionate diox 33.1 1.5E+02 0.0034 23.6 5.9 42 103-146 133-174 (396)
292 TIGR01134 purF amidophosphorib 33.1 87 0.0019 25.9 4.5 35 113-147 337-374 (442)
293 TIGR01091 upp uracil phosphori 33.0 1E+02 0.0022 22.5 4.5 31 114-144 122-155 (207)
294 PRK07322 adenine phosphoribosy 33.0 1.1E+02 0.0023 21.8 4.5 31 113-143 119-152 (178)
295 cd05191 NAD_bind_amino_acid_DH 32.8 1.1E+02 0.0024 18.6 4.0 32 114-146 23-54 (86)
296 PLN02440 amidophosphoribosyltr 32.6 80 0.0017 26.4 4.3 34 113-146 339-375 (479)
297 PRK06777 4-aminobutyrate amino 32.4 1E+02 0.0022 25.1 4.8 37 117-153 103-141 (421)
298 PRK07495 4-aminobutyrate amino 32.3 1E+02 0.0022 25.2 4.8 38 116-153 102-141 (425)
299 KOG1352 Vacuolar H+-ATPase V1 32.0 73 0.0016 26.3 3.7 45 80-137 249-293 (618)
300 PRK07480 putative aminotransfe 31.8 1.1E+02 0.0023 25.4 4.9 48 106-153 102-157 (456)
301 PTZ00145 phosphoribosylpyropho 31.7 91 0.002 25.8 4.4 33 113-145 334-369 (439)
302 TIGR00642 mmCoA_mut_beta methy 31.5 1.4E+02 0.0031 25.9 5.7 44 112-156 544-594 (619)
303 PRK06173 adenosylmethionine--8 31.2 1.3E+02 0.0027 24.7 5.2 45 107-151 96-148 (429)
304 PRK09792 4-aminobutyrate trans 31.2 1.1E+02 0.0024 24.9 4.8 37 117-153 103-141 (421)
305 COG1611 Predicted Rossmann fol 31.1 95 0.0021 22.8 4.0 11 114-124 14-24 (205)
306 TIGR00824 EIIA-man PTS system, 31.0 1.6E+02 0.0034 19.3 4.8 43 103-147 47-91 (116)
307 PRK09219 xanthine phosphoribos 31.0 1.5E+02 0.0033 21.3 5.0 50 111-160 114-173 (189)
308 PF10903 DUF2691: Protein of u 30.8 1.9E+02 0.0042 20.3 5.6 82 50-146 55-142 (153)
309 PRK06943 adenosylmethionine--8 30.7 1.1E+02 0.0024 25.2 4.8 38 116-153 115-160 (453)
310 PRK15116 sulfur acceptor prote 30.7 95 0.0021 23.8 4.1 34 114-148 30-63 (268)
311 TIGR01043 ATP_syn_A_arch ATP s 30.6 1.2E+02 0.0026 26.2 5.0 28 127-155 307-334 (578)
312 COG4671 Predicted glycosyl tra 30.6 87 0.0019 25.4 3.9 35 115-150 10-52 (400)
313 PRK09221 beta alanine--pyruvat 30.5 1.2E+02 0.0027 24.9 5.0 38 116-153 110-155 (445)
314 cd03028 GRX_PICOT_like Glutare 30.3 1E+02 0.0022 19.0 3.6 27 114-140 7-39 (90)
315 cd03423 SirA SirA (also known 30.2 1.2E+02 0.0026 17.7 5.8 39 103-141 15-53 (69)
316 PRK02304 adenine phosphoribosy 30.2 1.2E+02 0.0027 21.2 4.5 32 112-143 112-146 (175)
317 TIGR01381 E1_like_apg7 E1-like 30.2 99 0.0021 27.1 4.5 35 114-149 338-372 (664)
318 PRK12475 thiamine/molybdopteri 30.2 1.1E+02 0.0024 24.2 4.6 36 114-150 24-59 (338)
319 cd01423 MGS_CPS_I_III Methylgl 30.2 1.6E+02 0.0034 19.0 4.8 33 126-159 14-46 (116)
320 cd01424 MGS_CPS_II Methylglyox 30.1 1.2E+02 0.0026 19.3 4.1 31 126-158 14-45 (110)
321 PRK05579 bifunctional phosphop 30.0 2.2E+02 0.0047 23.3 6.3 25 123-148 213-237 (399)
322 PRK06827 phosphoribosylpyropho 29.9 1.1E+02 0.0024 24.9 4.5 32 113-144 263-297 (382)
323 COG2085 Predicted dinucleotide 29.9 2.3E+02 0.0051 21.0 7.5 27 114-140 147-174 (211)
324 cd01134 V_A-ATPase_A V/A-type 29.7 1.3E+02 0.0028 24.4 4.8 28 127-155 242-269 (369)
325 PRK06931 diaminobutyrate--2-ox 29.6 1.2E+02 0.0025 25.1 4.8 38 116-153 122-161 (459)
326 COG0160 GabT 4-aminobutyrate a 29.6 1.2E+02 0.0027 25.1 4.8 51 103-153 104-157 (447)
327 PRK06719 precorrin-2 dehydroge 29.6 1.4E+02 0.0031 20.7 4.6 31 114-146 13-43 (157)
328 COG0529 CysC Adenylylsulfate k 29.6 1.3E+02 0.0028 22.0 4.3 22 126-148 39-60 (197)
329 COG1737 RpiR Transcriptional r 29.6 1.8E+02 0.0039 22.3 5.5 48 100-148 116-165 (281)
330 TIGR01367 pyrE_Therm orotate p 29.0 1.4E+02 0.003 21.5 4.5 32 112-143 103-137 (187)
331 TIGR00365 monothiol glutaredox 29.0 1.1E+02 0.0024 19.2 3.7 27 114-140 11-43 (97)
332 cd01492 Aos1_SUMO Ubiquitin ac 29.0 1.1E+02 0.0024 22.1 4.1 38 114-152 21-58 (197)
333 PRK08328 hypothetical protein; 28.9 1.1E+02 0.0024 22.7 4.2 35 114-149 27-61 (231)
334 PRK02812 ribose-phosphate pyro 28.9 1E+02 0.0023 24.4 4.2 33 113-145 229-264 (330)
335 PRK07847 amidophosphoribosyltr 28.8 1.1E+02 0.0023 26.0 4.4 33 113-145 366-401 (510)
336 PRK12389 glutamate-1-semialdeh 28.6 1E+02 0.0022 25.1 4.3 38 116-153 110-149 (428)
337 COG4122 Predicted O-methyltran 28.5 2E+02 0.0044 21.4 5.4 40 107-146 77-117 (219)
338 PRK04192 V-type ATP synthase s 28.5 1.2E+02 0.0027 26.1 4.7 28 127-155 312-339 (586)
339 PRK06718 precorrin-2 dehydroge 28.5 1.4E+02 0.0031 21.6 4.6 33 114-148 10-42 (202)
340 PRK05630 adenosylmethionine--8 28.5 1.3E+02 0.0027 24.6 4.7 42 111-152 96-145 (422)
341 COG4545 Glutaredoxin-related p 28.4 1.4E+02 0.0031 18.4 3.7 37 115-151 3-40 (85)
342 PRK08972 fliI flagellum-specif 28.3 2.4E+02 0.0052 23.5 6.2 41 114-155 217-267 (444)
343 PLN02297 ribose-phosphate pyro 28.2 1.2E+02 0.0025 24.1 4.3 32 113-144 229-263 (326)
344 TIGR01251 ribP_PPkin ribose-ph 28.2 1.2E+02 0.0026 23.6 4.4 33 113-145 209-244 (308)
345 PRK14994 SAM-dependent 16S rib 28.1 2.9E+02 0.0062 21.4 8.5 103 49-159 24-136 (287)
346 cd01132 F1_ATPase_alpha F1 ATP 28.0 2.9E+02 0.0062 21.4 6.3 27 127-154 149-175 (274)
347 PRK06058 4-aminobutyrate amino 28.0 1.5E+02 0.0031 24.4 5.0 38 116-153 118-157 (443)
348 PRK05500 bifunctional orotidin 27.9 1.5E+02 0.0033 24.8 5.1 50 111-160 390-448 (477)
349 KOG1403 Predicted alanine-glyo 27.8 1.5E+02 0.0032 23.6 4.7 41 109-150 97-139 (452)
350 PRK07414 cob(I)yrinic acid a,c 27.8 1.2E+02 0.0026 21.8 4.0 38 112-149 19-62 (178)
351 PLN02347 GMP synthetase 27.7 1.9E+02 0.004 24.7 5.7 44 105-149 220-266 (536)
352 cd00291 SirA_YedF_YeeD SirA, Y 27.7 1.3E+02 0.0027 17.2 5.8 37 104-140 16-52 (69)
353 cd00006 PTS_IIA_man PTS_IIA, P 27.7 1.8E+02 0.0039 19.0 5.3 44 103-147 46-90 (122)
354 PRK00278 trpC indole-3-glycero 27.7 2.7E+02 0.0059 21.1 7.1 76 65-142 162-237 (260)
355 PLN02293 adenine phosphoribosy 27.6 1.6E+02 0.0034 21.2 4.6 33 111-143 122-157 (187)
356 PF00590 TP_methylase: Tetrapy 27.4 2.3E+02 0.0049 20.1 5.6 109 48-160 11-130 (210)
357 cd00532 MGS-like MGS-like doma 27.3 1.6E+02 0.0035 18.9 4.3 7 133-139 37-43 (112)
358 PRK12900 secA preprotein trans 27.2 1.5E+02 0.0033 27.4 5.2 36 112-148 596-631 (1025)
359 PRK11749 dihydropyrimidine deh 27.2 1.4E+02 0.003 24.5 4.8 34 112-146 271-304 (457)
360 PRK05597 molybdopterin biosynt 27.2 1.3E+02 0.0028 24.0 4.5 35 114-149 28-62 (355)
361 PF00975 Thioesterase: Thioest 27.2 2E+02 0.0044 20.4 5.3 35 113-147 64-102 (229)
362 TIGR03498 FliI_clade3 flagella 27.2 2.5E+02 0.0054 23.1 6.1 41 114-155 195-245 (418)
363 PF01135 PCMT: Protein-L-isoas 26.9 95 0.0021 22.8 3.4 30 125-154 108-138 (209)
364 TIGR02355 moeB molybdopterin s 26.8 1.2E+02 0.0027 22.6 4.1 35 114-149 24-58 (240)
365 PRK09401 reverse gyrase; Revie 26.8 1.6E+02 0.0034 27.8 5.4 43 104-149 320-365 (1176)
366 PRK12548 shikimate 5-dehydroge 26.7 1.4E+02 0.003 22.9 4.5 32 114-146 126-157 (289)
367 cd00757 ThiF_MoeB_HesA_family 26.7 1.3E+02 0.0028 22.2 4.2 35 114-149 21-55 (228)
368 PRK07272 amidophosphoribosyltr 26.6 1.3E+02 0.0027 25.4 4.4 34 113-146 349-385 (484)
369 COG2213 MtlA Phosphotransferas 26.6 1.3E+02 0.0028 24.8 4.2 37 115-151 379-420 (472)
370 PF00072 Response_reg: Respons 26.5 1.6E+02 0.0035 18.0 4.3 14 132-146 37-50 (112)
371 cd01485 E1-1_like Ubiquitin ac 26.5 1.3E+02 0.0028 21.7 4.1 35 114-149 19-53 (198)
372 TIGR02407 ectoine_ectB diamino 26.4 86 0.0019 25.4 3.4 38 116-153 100-139 (412)
373 PRK06936 type III secretion sy 26.1 2.7E+02 0.0059 23.1 6.2 41 114-155 217-267 (439)
374 TIGR00508 bioA adenosylmethion 26.1 1.5E+02 0.0033 24.2 4.8 37 116-152 106-150 (427)
375 PRK01259 ribose-phosphate pyro 26.0 1.3E+02 0.0029 23.5 4.3 33 113-145 207-242 (309)
376 cd01078 NAD_bind_H4MPT_DH NADP 26.0 1.7E+02 0.0036 20.7 4.6 33 113-146 27-59 (194)
377 KOG1618 Predicted phosphatase 26.0 1.8E+02 0.004 23.3 4.9 29 113-146 119-147 (389)
378 PF07879 PHB_acc_N: PHB/PHA ac 25.8 76 0.0017 18.7 2.2 28 48-75 16-45 (64)
379 PRK00258 aroE shikimate 5-dehy 25.8 1.6E+02 0.0035 22.4 4.7 34 114-148 123-156 (278)
380 PRK08558 adenine phosphoribosy 25.6 1.7E+02 0.0037 21.9 4.7 50 111-160 173-232 (238)
381 PRK08223 hypothetical protein; 25.6 1.4E+02 0.0031 23.2 4.3 35 114-149 27-61 (287)
382 cd00755 YgdL_like Family of ac 25.6 1.4E+02 0.003 22.3 4.1 33 115-148 12-44 (231)
383 PRK04612 argD acetylornithine 25.3 1.3E+02 0.0028 24.4 4.3 38 116-153 99-145 (408)
384 COG1148 HdrA Heterodisulfide r 24.9 1.9E+02 0.0042 24.7 5.1 31 114-146 124-154 (622)
385 PRK09264 diaminobutyrate--2-ox 24.8 84 0.0018 25.6 3.1 38 116-153 104-143 (425)
386 PRK12770 putative glutamate sy 24.7 1.6E+02 0.0035 23.1 4.6 32 114-146 172-203 (352)
387 PRK12829 short chain dehydroge 24.7 1.5E+02 0.0034 21.6 4.4 33 113-146 10-42 (264)
388 KOG2585 Uncharacterized conser 24.5 1.2E+02 0.0026 25.2 3.8 29 117-145 269-300 (453)
389 COG1179 Dinucleotide-utilizing 24.5 1.2E+02 0.0026 23.2 3.6 32 114-146 30-61 (263)
390 PLN02335 anthranilate synthase 24.4 1.8E+02 0.0039 21.4 4.6 33 113-146 17-49 (222)
391 KOG1404 Alanine-glyoxylate ami 24.4 2E+02 0.0043 23.7 4.9 37 101-137 95-131 (442)
392 PRK04176 ribulose-1,5-biphosph 24.3 2.8E+02 0.006 20.9 5.7 29 116-146 27-55 (257)
393 PRK08927 fliI flagellum-specif 24.3 2.4E+02 0.0052 23.5 5.6 42 114-156 213-264 (442)
394 PF02534 T4SS-DNA_transf: Type 24.2 1.2E+02 0.0026 24.9 3.9 32 114-146 70-101 (469)
395 PRK09496 trkA potassium transp 24.1 2.5E+02 0.0054 22.7 5.8 31 116-147 232-262 (453)
396 PRK12831 putative oxidoreducta 24.1 1.5E+02 0.0032 24.5 4.4 32 113-146 280-311 (464)
397 cd03029 GRX_hybridPRX5 Glutare 24.1 1.5E+02 0.0033 17.0 3.8 25 116-140 2-27 (72)
398 COG3620 Predicted transcriptio 24.1 1.2E+02 0.0027 21.6 3.3 31 118-148 75-105 (187)
399 PF01118 Semialdhyde_dh: Semia 24.1 1.5E+02 0.0032 19.3 3.7 35 113-148 65-99 (121)
400 PRK09123 amidophosphoribosyltr 24.1 1.5E+02 0.0032 24.9 4.4 33 113-145 359-394 (479)
401 PRK09548 PTS system ascorbate- 24.0 1.5E+02 0.0032 25.7 4.4 29 112-140 504-537 (602)
402 PHA03169 hypothetical protein; 24.0 1.1E+02 0.0024 24.8 3.4 44 115-159 367-412 (413)
403 KOG1401 Acetylornithine aminot 23.9 95 0.0021 25.5 3.1 37 114-150 115-159 (433)
404 PRK06938 diaminobutyrate--2-ox 23.9 1.7E+02 0.0037 24.2 4.8 36 118-153 129-167 (464)
405 cd01544 PBP1_GalR Ligand-bindi 23.8 2.8E+02 0.006 20.3 5.6 31 114-144 178-211 (270)
406 TIGR00732 dprA DNA protecting 23.8 3E+02 0.0066 20.3 6.4 26 126-152 169-194 (220)
407 PF11181 YflT: Heat induced st 23.8 1.9E+02 0.0042 18.3 4.1 10 115-124 27-36 (103)
408 KOG1712 Adenine phosphoribosyl 23.7 1.1E+02 0.0024 21.8 3.1 57 78-140 91-151 (183)
409 PRK07878 molybdopterin biosynt 23.6 1.4E+02 0.0031 24.1 4.2 35 114-149 42-76 (392)
410 PRK01565 thiamine biosynthesis 23.3 1.7E+02 0.0037 23.7 4.6 28 113-140 175-202 (394)
411 TIGR00342 thiazole biosynthesi 23.2 1.8E+02 0.0039 23.4 4.6 28 113-140 171-198 (371)
412 KOG2018 Predicted dinucleotide 23.2 1.9E+02 0.0041 23.2 4.5 32 114-146 74-105 (430)
413 TIGR03251 LAT_fam L-lysine 6-t 23.2 1.8E+02 0.0039 23.7 4.7 40 114-153 102-155 (431)
414 PRK00377 cbiT cobalt-precorrin 23.0 2.8E+02 0.0062 19.6 5.8 44 101-145 125-168 (198)
415 PF04763 DUF562: Protein of un 22.8 2.3E+02 0.0049 19.6 4.3 29 113-141 14-51 (146)
416 cd05212 NAD_bind_m-THF_DH_Cycl 22.7 2.3E+02 0.0049 19.4 4.5 33 113-146 27-59 (140)
417 TIGR02621 cas3_GSU0051 CRISPR- 22.7 1.3E+02 0.0028 27.2 4.0 35 113-150 271-305 (844)
418 PRK05205 bifunctional pyrimidi 22.6 2.1E+02 0.0045 20.1 4.5 31 113-143 94-128 (176)
419 PRK07814 short chain dehydroge 22.6 1.9E+02 0.0041 21.3 4.5 25 115-139 11-35 (263)
420 TIGR01042 V-ATPase_V1_A V-type 22.6 1.9E+02 0.0041 25.0 4.8 28 127-155 313-340 (591)
421 PRK07411 hypothetical protein; 22.4 1.7E+02 0.0037 23.7 4.4 35 114-149 38-72 (390)
422 COG1202 Superfamily II helicas 22.4 90 0.002 27.2 2.8 38 113-152 440-477 (830)
423 cd03027 GRX_DEP Glutaredoxin ( 22.4 1.7E+02 0.0037 16.9 3.6 25 116-140 2-27 (73)
424 PF05430 Methyltransf_30: S-ad 22.4 59 0.0013 21.8 1.5 43 100-147 69-111 (124)
425 PLN02695 GDP-D-mannose-3',5'-e 22.3 1.9E+02 0.004 23.0 4.6 33 113-146 20-52 (370)
426 PF02527 GidB: rRNA small subu 22.3 2E+02 0.0044 20.6 4.3 39 113-151 71-109 (184)
427 TIGR01373 soxB sarcosine oxida 22.2 1.8E+02 0.0039 23.2 4.5 34 114-148 30-64 (407)
428 PRK08644 thiamine biosynthesis 22.2 1.8E+02 0.0039 21.3 4.2 34 114-148 28-61 (212)
429 PRK02277 orotate phosphoribosy 22.2 1.9E+02 0.0041 20.9 4.3 46 113-160 139-191 (200)
430 KOG2862 Alanine-glyoxylate ami 22.1 1.6E+02 0.0034 23.6 3.9 34 111-146 89-122 (385)
431 cd06352 PBP1_NPR_GC_like Ligan 22.0 2.5E+02 0.0053 22.0 5.2 37 104-140 184-220 (389)
432 TIGR03840 TMPT_Se_Te thiopurin 22.0 3.2E+02 0.007 19.9 5.8 44 102-150 21-67 (213)
433 PRK07402 precorrin-6B methylas 22.0 2.9E+02 0.0064 19.5 5.7 45 101-145 122-166 (196)
434 PRK07523 gluconate 5-dehydroge 22.0 2E+02 0.0043 21.0 4.5 31 114-145 10-40 (255)
435 PF05586 Ant_C: Anthrax recept 22.0 79 0.0017 20.0 1.9 18 129-146 61-78 (95)
436 TIGR01316 gltA glutamate synth 21.9 1.8E+02 0.0038 23.9 4.5 32 113-146 271-302 (449)
437 cd06372 PBP1_GC_G_like Ligand- 21.9 2.5E+02 0.0054 22.2 5.3 40 101-140 183-222 (391)
438 PRK11267 biopolymer transport 21.9 2.6E+02 0.0057 18.9 4.7 35 112-146 97-134 (141)
439 PRK09492 treR trehalose repres 21.9 1.4E+02 0.003 22.6 3.7 30 116-145 233-262 (315)
440 COG2072 TrkA Predicted flavopr 21.7 1.6E+02 0.0034 24.3 4.1 33 113-147 174-206 (443)
441 TIGR03127 RuMP_HxlB 6-phospho 21.7 2.9E+02 0.0062 19.2 5.2 47 100-147 16-64 (179)
442 TIGR02801 tolR TolR protein. T 21.7 2.5E+02 0.0054 18.5 4.7 34 112-145 91-127 (129)
443 PLN02238 hypoxanthine phosphor 21.7 2.1E+02 0.0044 20.6 4.3 31 113-143 96-129 (189)
444 PF00202 Aminotran_3: Aminotra 21.6 1.6E+02 0.0034 23.2 4.0 51 102-152 63-121 (339)
445 smart00851 MGS MGS-like domain 21.6 1.8E+02 0.0038 17.8 3.5 10 131-140 23-32 (90)
446 TIGR01035 hemA glutamyl-tRNA r 21.5 1.9E+02 0.0042 23.5 4.6 35 113-148 179-213 (417)
447 PRK10886 DnaA initiator-associ 21.5 3.3E+02 0.0071 19.8 6.1 41 106-147 102-144 (196)
448 PRK08945 putative oxoacyl-(acy 21.4 2.2E+02 0.0047 20.7 4.6 23 116-138 38-60 (247)
449 cd06269 PBP1_glutamate_recepto 21.4 2.3E+02 0.005 20.6 4.8 36 104-139 184-220 (298)
450 PRK15083 PTS system mannitol-s 21.4 1.6E+02 0.0034 25.7 4.2 33 114-146 378-415 (639)
451 PF01596 Methyltransf_3: O-met 21.3 3.3E+02 0.0072 19.8 5.5 41 110-150 66-107 (205)
452 PRK12769 putative oxidoreducta 21.2 1.9E+02 0.0041 25.1 4.7 31 114-146 327-357 (654)
453 TIGR00268 conserved hypothetic 21.1 1.9E+02 0.004 21.7 4.2 27 114-140 12-38 (252)
454 PF14681 UPRTase: Uracil phosp 21.1 2.4E+02 0.0051 20.5 4.6 31 114-144 121-156 (207)
455 cd01080 NAD_bind_m-THF_DH_Cycl 21.0 2.2E+02 0.0047 20.1 4.2 33 113-147 43-76 (168)
456 PRK09280 F0F1 ATP synthase sub 21.0 4.4E+02 0.0096 22.1 6.5 28 127-155 225-253 (463)
457 cd03421 SirA_like_N SirA_like_ 20.9 1.8E+02 0.0039 16.6 4.9 35 105-140 17-51 (67)
458 PRK06523 short chain dehydroge 20.9 2E+02 0.0043 21.0 4.3 31 114-145 9-39 (260)
459 PRK12814 putative NADPH-depend 20.8 2E+02 0.0043 25.0 4.7 35 111-146 320-354 (652)
460 PRK11024 colicin uptake protei 20.7 2.8E+02 0.0061 18.7 4.7 34 112-145 101-137 (141)
461 PRK13354 tyrosyl-tRNA syntheta 20.6 85 0.0018 25.7 2.3 40 113-153 30-79 (410)
462 TIGR01529 argR_whole arginine 20.6 1.5E+02 0.0033 20.4 3.3 26 111-136 119-144 (146)
463 COG0461 PyrE Orotate phosphori 20.4 3E+02 0.0066 20.2 4.9 48 112-159 110-166 (201)
464 cd01133 F1-ATPase_beta F1 ATP 20.4 4.1E+02 0.0089 20.5 6.1 28 127-155 150-178 (274)
465 PRK05600 thiamine biosynthesis 20.4 1.8E+02 0.0039 23.4 4.1 35 114-149 41-75 (370)
466 TIGR01470 cysG_Nterm siroheme 20.3 2.5E+02 0.0054 20.4 4.6 32 114-147 9-40 (205)
467 TIGR02405 trehalos_R_Ecol treh 20.3 1.7E+02 0.0036 22.2 3.9 30 116-145 230-259 (311)
468 PRK04965 NADH:flavorubredoxin 20.3 3.5E+02 0.0075 21.4 5.8 36 109-146 136-171 (377)
469 PRK12779 putative bifunctional 20.3 2E+02 0.0043 26.4 4.7 32 113-146 305-336 (944)
470 smart00460 TGc Transglutaminas 20.3 1.5E+02 0.0034 16.5 2.9 21 124-145 10-30 (68)
471 TIGR01573 cas2 CRISPR-associat 20.3 1.7E+02 0.0037 18.4 3.3 25 117-141 4-32 (95)
472 COG1203 CRISPR-associated heli 20.2 2E+02 0.0043 25.5 4.6 41 108-149 434-474 (733)
473 PLN02206 UDP-glucuronate decar 20.1 2E+02 0.0044 23.6 4.5 33 113-146 118-150 (442)
474 PRK07688 thiamine/molybdopteri 20.0 1.7E+02 0.0037 23.2 3.9 35 114-149 24-58 (339)
No 1
>PLN02160 thiosulfate sulfurtransferase
Probab=99.94 E-value=1.8e-26 Score=158.76 Aligned_cols=113 Identities=45% Similarity=0.819 Sum_probs=94.2
Q ss_pred CcccCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCc--EEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchh
Q 031359 49 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 126 (161)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA--~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~ 126 (161)
...++++++.++++++.+|||||++.||..|||||| +|+|+........+...++.......++++++||+||.+|.|
T Consensus 14 ~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~R 93 (136)
T PLN02160 14 VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGAR 93 (136)
T ss_pred eeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcHH
Confidence 457889999998887788999999999999999999 899974332223333445555454446788999999999999
Q ss_pred HHHHHHHHHHCCCcceeEecccHHHHhhCCCCCCC
Q 031359 127 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 161 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 161 (161)
|..++..|...||.+|++|.||+.+|.++|+|+++
T Consensus 94 S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 128 (136)
T PLN02160 94 SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ 128 (136)
T ss_pred HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence 99999999999999999999999999999999864
No 2
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.7e-26 Score=153.10 Aligned_cols=114 Identities=41% Similarity=0.707 Sum_probs=103.1
Q ss_pred CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCC-CCeEEEEeCCc
Q 031359 47 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-HDEIIVGCQSG 124 (161)
Q Consensus 47 ~~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ivv~c~~g 124 (161)
..+..++.++++++.+.+ .++||||.++||..||+|.+||||+...-......+++|+++.....++ ++.|||+|.+|
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG 99 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASG 99 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccC
Confidence 667789999999999887 8999999999999999999999999666667778888998888777755 55999999999
Q ss_pred hhHHHHHHHHHHCCCcceeEecccHHHHhhCCCCCC
Q 031359 125 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160 (161)
Q Consensus 125 ~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 160 (161)
.||..|...|...||+||.+|.|||.+|.+.++|..
T Consensus 100 ~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 100 VRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred cchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 999999999999999999999999999999998864
No 3
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.93 E-value=7.9e-26 Score=147.50 Aligned_cols=98 Identities=31% Similarity=0.488 Sum_probs=85.8
Q ss_pred cccCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHH
Q 031359 50 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 129 (161)
Q Consensus 50 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~ 129 (161)
..++++++.++++++.+|||+|++++|..||||||+|+|+. .+......++++++||+||.+|.++..
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~iv~~c~~g~~s~~ 69 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS------------QLESEGLPLVGANAIIFHCRSGMRTQQ 69 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh------------HhcccccCCCCCCcEEEEeCCCchHHH
Confidence 35788999988887789999999999999999999999983 222222346788999999999999999
Q ss_pred HHHHHHHCCCcceeEecccHHHHhhCCCCC
Q 031359 130 AATDLLNAGFAGITDIAGGFAAWRQNGLPT 159 (161)
Q Consensus 130 ~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 159 (161)
++..|++.||+++++|.||+.+|..+|+|+
T Consensus 70 ~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 70 NAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 999999999999999999999999999885
No 4
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.93 E-value=1.6e-25 Score=148.59 Aligned_cols=98 Identities=23% Similarity=0.372 Sum_probs=83.8
Q ss_pred CCCcccCHHHHHHHHhCC--CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEeC
Q 031359 47 GVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ 122 (161)
Q Consensus 47 ~~~~~i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~ 122 (161)
.....++++++.++++.+ .+|||+|++.+|..||||||+|+|+ ..+......+ +++++|||||.
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~------------~~l~~~~~~l~~~~~~~ivv~C~ 74 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPG------------AELVLRVGELAPDPRTPIVVNCA 74 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCH------------HHHHHHHHhcCCCCCCeEEEECC
Confidence 445678999999888754 6899999999999999999999998 3344444444 45789999999
Q ss_pred CchhHHHHHHHHHHCCCcc-eeEecccHHHHhhCC
Q 031359 123 SGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNG 156 (161)
Q Consensus 123 ~g~~a~~~~~~L~~~G~~~-v~~l~GG~~~W~~~g 156 (161)
+|.+|..++..|+..||+| |++|+||+.+|..+|
T Consensus 75 ~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 75 GRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 9999999999999999988 899999999999876
No 5
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.93 E-value=3.8e-25 Score=146.56 Aligned_cols=101 Identities=32% Similarity=0.491 Sum_probs=89.7
Q ss_pred CCcccCHHHHHHHHhC-CCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchh
Q 031359 48 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 126 (161)
Q Consensus 48 ~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~ 126 (161)
....++++++.++++. +.+|||+|++.+|..||||||+|+|+ ..+......++++++|+|||.+|.+
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~~ 70 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTN------------DSLGAFMRQADFDTPVMVMCYHGNS 70 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCH------------HHHHHHHHhcCCCCCEEEEeCCCCC
Confidence 3457889999988754 57899999999999999999999998 3455555667889999999999999
Q ss_pred HHHHHHHHHHCCCcceeEecccHHHHhhCCCCCC
Q 031359 127 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 160 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 160 (161)
|..++..|+..||+||++|+||+.+|..+++|++
T Consensus 71 s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~ 104 (108)
T PRK00162 71 SQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEV 104 (108)
T ss_pred HHHHHHHHHHCCchheEEecCCHHHHHhcCCCcc
Confidence 9999999999999999999999999999999986
No 6
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.92 E-value=5.3e-25 Score=144.14 Aligned_cols=98 Identities=24% Similarity=0.340 Sum_probs=78.5
Q ss_pred ccCHHHHHHHHhC-CCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHH
Q 031359 51 SVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 129 (161)
Q Consensus 51 ~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~ 129 (161)
.++++++.+++++ +.+|||||++.||..||||||+|+|+..+. .....+... ..++++++|||||.+|.+|..
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~-----~~~~~~~~~-~~~~~~~~ivvyC~~G~rs~~ 76 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFR-----EFPFWLDEN-LDLLKGKKVLMYCTGGIRCEK 76 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHh-----HhHHHHHhh-hhhcCCCEEEEECCCchhHHH
Confidence 5788888888765 478999999999999999999999984210 001112111 124688999999999999999
Q ss_pred HHHHHHHCCCcceeEecccHHHHhh
Q 031359 130 AATDLLNAGFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 130 ~~~~L~~~G~~~v~~l~GG~~~W~~ 154 (161)
++..|+.+||++|++|+||+.+|.+
T Consensus 77 a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 77 ASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred HHHHHHHhCCcceeeechhHHHHhC
Confidence 9999999999999999999999963
No 7
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.91 E-value=4.5e-24 Score=136.95 Aligned_cols=89 Identities=35% Similarity=0.606 Sum_probs=79.5
Q ss_pred cCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHH
Q 031359 52 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA 131 (161)
Q Consensus 52 i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~ 131 (161)
++++++.+++.++.++||+|++++|..||||||+|+|. +.+......++++++||+||.+|.++..++
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~------------~~~~~~~~~~~~~~~vvl~c~~g~~a~~~a 68 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPL------------DELRDRLNELPKDKEIIVYCAVGLRGYIAA 68 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCH------------HHHHHHHHhcCCCCcEEEEcCCChhHHHHH
Confidence 46788888887778999999999999999999999998 345555556788899999999999999999
Q ss_pred HHHHHCCCcceeEecccHHHHh
Q 031359 132 TDLLNAGFAGITDIAGGFAAWR 153 (161)
Q Consensus 132 ~~L~~~G~~~v~~l~GG~~~W~ 153 (161)
..|+..|| ++++|+||+.+|+
T Consensus 69 ~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 69 RILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHCCC-CEEEecCCHHHhc
Confidence 99999999 8999999999996
No 8
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.91 E-value=6.2e-24 Score=141.19 Aligned_cols=98 Identities=27% Similarity=0.496 Sum_probs=84.1
Q ss_pred CcccCHHHHHHHHhCC---CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHH-HHHhcCCCCCeEEEEeCCc
Q 031359 49 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQSG 124 (161)
Q Consensus 49 ~~~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ivv~c~~g 124 (161)
...++++++.+++..+ .+|||+|++.+|..||||||+|+|.. .+. +....++++++||+||++|
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~~i~~~~~vvvyc~~g 74 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR------------EICENATAKLDKEKLFVVYCDGP 74 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH------------HhhhHhhhcCCCCCeEEEEECCC
Confidence 3568889998888643 78999999999999999999999983 232 3445678899999999987
Q ss_pred --hhHHHHHHHHHHCCCcceeEecccHHHHhhCCCCC
Q 031359 125 --KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 159 (161)
Q Consensus 125 --~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 159 (161)
.++..++..|+++||+ +++|+||+.+|..+|+|+
T Consensus 75 ~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 75 GCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 4899999999999995 999999999999999985
No 9
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.91 E-value=4.1e-24 Score=163.48 Aligned_cols=139 Identities=20% Similarity=0.308 Sum_probs=104.1
Q ss_pred eeeccccccccccccccccccc---------ccC-CCcccCHHHHHHHHhC-CCEEEEcCChhhHh-----------cCC
Q 031359 23 IGFISSKILSFCPKASLRGNLE---------AVG-VPTSVPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGH 80 (161)
Q Consensus 23 ~~~l~gg~~~w~~~~~~~~~~~---------~~~-~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~-----------~gh 80 (161)
+.+++||+.+|..+..+..... ... .....+.+++....+. +.+|||+|++.+|. .||
T Consensus 116 v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~Gh 195 (281)
T PRK11493 116 VSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGH 195 (281)
T ss_pred EEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCccccc
Confidence 3478999999986532211110 000 1113344455444443 47899999999995 699
Q ss_pred CCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHHhh-CCC
Q 031359 81 ATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NGL 157 (161)
Q Consensus 81 IpgA~nip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~-~g~ 157 (161)
||||+|+|+..+...+.+..++.++..+.. ++++++||+||++|.+|+.++..|+.+||++|++|+|||.+|.. .++
T Consensus 196 IpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~ 275 (281)
T PRK11493 196 IPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADL 275 (281)
T ss_pred CCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCC
Confidence 999999998766554455666777776654 67889999999999999999999999999999999999999998 699
Q ss_pred CCCC
Q 031359 158 PTEP 161 (161)
Q Consensus 158 p~~~ 161 (161)
|+++
T Consensus 276 P~~~ 279 (281)
T PRK11493 276 PVEP 279 (281)
T ss_pred CcCC
Confidence 9874
No 10
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.91 E-value=9.3e-24 Score=142.83 Aligned_cols=111 Identities=30% Similarity=0.398 Sum_probs=84.8
Q ss_pred CCCcccCHHHHHHHHhC--CCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCc
Q 031359 47 GVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG 124 (161)
Q Consensus 47 ~~~~~i~~~~~~~~~~~--~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g 124 (161)
+....++++++.+++++ +++|||+|++.+|..||||||+|+|+..+... ....+ ........++++++||+||++|
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~-~~~~~-~~~~~~~~~~~~~~ivv~C~~G 82 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK-AAELK-SLQELPLDNDKDSPIYVVCRRG 82 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh-hhhhh-hhhhcccccCCCCcEEEECCCC
Confidence 44567899999988865 47899999999999999999999998422110 00000 0000112247789999999999
Q ss_pred hhHHHHHHHHHHCCC-cceeEecccHHHHhhCCCCC
Q 031359 125 KRSMMAATDLLNAGF-AGITDIAGGFAAWRQNGLPT 159 (161)
Q Consensus 125 ~~a~~~~~~L~~~G~-~~v~~l~GG~~~W~~~g~p~ 159 (161)
.+|..++..|+..|| ++++.|+||+.+|..+..+.
T Consensus 83 ~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 83 NDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred CcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 999999999999999 79999999999999876553
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.91 E-value=5.4e-24 Score=139.09 Aligned_cols=97 Identities=26% Similarity=0.400 Sum_probs=78.4
Q ss_pred cCHHHHHHHHhCC--CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHH
Q 031359 52 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 129 (161)
Q Consensus 52 i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~ 129 (161)
++++++.++++.+ .+|||||++.||..||||||+|+|+...... . ..........++++++||+||.+|.+|..
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~-~---~~~~~~~~~~~~~~~~ivv~C~~G~rs~~ 76 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD-F---LEIEEDILDQLPDDQEVTVICAKEGSSQF 76 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH-H---HHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence 4678888887653 7899999999999999999999998421100 0 00013345667889999999999999999
Q ss_pred HHHHHHHCCCcceeEecccHHHHh
Q 031359 130 AATDLLNAGFAGITDIAGGFAAWR 153 (161)
Q Consensus 130 ~~~~L~~~G~~~v~~l~GG~~~W~ 153 (161)
++..|++.||+ ++.|.||+.+|.
T Consensus 77 aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 77 VAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHHcCce-eEEeCCcHHhhc
Confidence 99999999998 999999999996
No 12
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.91 E-value=1.1e-23 Score=143.69 Aligned_cols=102 Identities=28% Similarity=0.485 Sum_probs=79.2
Q ss_pred cCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccCCC----CC------------------CCHHHHHHHH-
Q 031359 52 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----MT------------------KNLKFVEEVS- 108 (161)
Q Consensus 52 i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~----~~------------------~~~~~~~~~~- 108 (161)
|++++++++++++.+|||||++.||..||||||+|+|+....... .. ..+.++....
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE 80 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 578888888887789999999999999999999999984321100 00 0011122221
Q ss_pred hcCCCCCeEEEEeC-CchhHHHHHHHHHHCCCcceeEecccHHHHhh
Q 031359 109 TRFRKHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 109 ~~l~~~~~ivv~c~-~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 154 (161)
..++++++||+||+ +|.+|..+++.|+.+|| +|++|+||+.+|+.
T Consensus 81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 35788999999997 68999999999999999 69999999999975
No 13
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.90 E-value=1.6e-23 Score=135.64 Aligned_cols=90 Identities=28% Similarity=0.385 Sum_probs=73.8
Q ss_pred cCHHHHHHHHhCC---CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEeCCchh
Q 031359 52 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKR 126 (161)
Q Consensus 52 i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~g~~ 126 (161)
++++++.++++.+ ++|||||++.||..||||||+|+|+. .+......+ .++++||+||.+|.+
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~------------~l~~~~~~~~~~~~~~iv~~c~~G~r 68 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG------------QLVQETDHFAPVRGARIVLADDDGVR 68 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH------------HHHHHHHHhcccCCCeEEEECCCCCh
Confidence 4677888887653 67999999999999999999999983 222221222 246789999999999
Q ss_pred HHHHHHHHHHCCCcceeEecccHHHHhh
Q 031359 127 SMMAATDLLNAGFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 154 (161)
|..++..|+.+||+ |++|+||+.+|..
T Consensus 69 s~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 69 ADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred HHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 99999999999998 9999999999963
No 14
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.90 E-value=2.3e-23 Score=136.33 Aligned_cols=92 Identities=32% Similarity=0.543 Sum_probs=77.8
Q ss_pred cCHHHHHHHHhCC---CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC---CCCCeEEEEeCCch
Q 031359 52 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEIIVGCQSGK 125 (161)
Q Consensus 52 i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l---~~~~~ivv~c~~g~ 125 (161)
++++++.+++..+ .+|||+|++.||..+|||||+|+|+. .+......+ +++++||+||++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence 6778888887654 78999999999999999999999983 222333333 35899999999999
Q ss_pred hHHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 126 RSMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 126 ~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
+|..++..|.+.||++|++|+||+.+|.+.
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 999999999999999999999999999763
No 15
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.90 E-value=1.2e-23 Score=138.68 Aligned_cols=100 Identities=26% Similarity=0.405 Sum_probs=79.8
Q ss_pred CHHHHHHHHh-C-CCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEeCCchhHH
Q 031359 53 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM 128 (161)
Q Consensus 53 ~~~~~~~~~~-~-~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~a~ 128 (161)
+++++.++++ . +.+|||+|++.+|..||||||+|+|+..+.. .....++.+...+.. .+++++||+||.+|.+|.
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~ 80 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPD-ALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK 80 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhh-hhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence 4567777766 4 4889999999999999999999999854322 122233344444443 357899999999999999
Q ss_pred HHHHHHHHCCCcceeEecccHHHHh
Q 031359 129 MAATDLLNAGFAGITDIAGGFAAWR 153 (161)
Q Consensus 129 ~~~~~L~~~G~~~v~~l~GG~~~W~ 153 (161)
.++..|+.+||++|++|+||+.+|.
T Consensus 81 ~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 81 AAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHHHHHHHcCCccceecCCcHHHHc
Confidence 9999999999999999999999996
No 16
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.90 E-value=2.4e-23 Score=144.60 Aligned_cols=92 Identities=25% Similarity=0.378 Sum_probs=81.6
Q ss_pred HHHHhCC--CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHH
Q 031359 58 HELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL 135 (161)
Q Consensus 58 ~~~~~~~--~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~ 135 (161)
.++++.+ ++|||||++.+|..||||||+|+|. ..+......++++++|||||.+|.+|..++..|+
T Consensus 3 ~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~ 70 (145)
T cd01535 3 AAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADLA 70 (145)
T ss_pred HHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHH
Confidence 4444444 6899999999999999999999997 5666777778888999999999999999999999
Q ss_pred HCCCcceeEecccHHHHhhCCCCCCC
Q 031359 136 NAGFAGITDIAGGFAAWRQNGLPTEP 161 (161)
Q Consensus 136 ~~G~~~v~~l~GG~~~W~~~g~p~~~ 161 (161)
..|+++|++|+||+.+|..+|+|+++
T Consensus 71 ~~G~~~v~~L~GG~~aW~~~g~pl~~ 96 (145)
T cd01535 71 ALTVKPVFVLEGGTAAWIAAGLPVES 96 (145)
T ss_pred HcCCcCeEEecCcHHHHHHCCCCccc
Confidence 99999999999999999999999863
No 17
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.90 E-value=3.2e-23 Score=134.22 Aligned_cols=90 Identities=34% Similarity=0.598 Sum_probs=80.3
Q ss_pred cCHHHHHHHHhC--CCEEEEcCChhhHhc--CCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhH
Q 031359 52 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 127 (161)
Q Consensus 52 i~~~~~~~~~~~--~~~liDvR~~~e~~~--ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a 127 (161)
++++++.++++. +.+|||+|++.+|.. ||||||+|+|+ ..+......++++++|||||.+|.+|
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~------------~~~~~~~~~~~~~~~ivv~c~~g~~s 69 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDE------------DSLDDWLGDLDRDRPVVVYCYHGNSS 69 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCH------------HHHHHHHhhcCCCCCEEEEeCCCChH
Confidence 577888888765 389999999999999 99999999998 34555556688899999999999999
Q ss_pred HHHHHHHHHCCCcceeEecccHHHHh
Q 031359 128 MMAATDLLNAGFAGITDIAGGFAAWR 153 (161)
Q Consensus 128 ~~~~~~L~~~G~~~v~~l~GG~~~W~ 153 (161)
..++..|+..||++|++|+||+.+|.
T Consensus 70 ~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 70 AQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 99999999999999999999999996
No 18
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.90 E-value=6.8e-23 Score=144.81 Aligned_cols=111 Identities=21% Similarity=0.282 Sum_probs=83.8
Q ss_pred CCcccCHHHHHHHHhCC-CEEEEcCChh----hHhcC---------CCCCcEEeccccccCCCCCCCHHHHHHHHhc---
Q 031359 48 VPTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMTKNLKFVEEVSTR--- 110 (161)
Q Consensus 48 ~~~~i~~~~~~~~~~~~-~~liDvR~~~----e~~~g---------hIpgA~nip~~~~~~~~~~~~~~~~~~~~~~--- 110 (161)
....++++++.++++++ .+|||||++. +|..| |||||+|+|+... ..-.......+...+..
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~-~~l~~~~~~~~~~~l~~~~~ 112 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGY-GNLAPAWQAYFRRGLERATG 112 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCC-CCCCCchhHHHHHHHHHhcC
Confidence 34578999999988764 8899999866 45544 9999999996211 00000111223333332
Q ss_pred CCCCCeEEEEeCCch-hHHHHHHHHHHCCCcceeEecccHHHHhhCCCCC
Q 031359 111 FRKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 159 (161)
Q Consensus 111 l~~~~~ivv~c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 159 (161)
.+++++||+||.+|. +|..+++.|+.+||++|++|+||+.+|+++|+|+
T Consensus 113 ~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 113 GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 268899999999986 8999999999999999999999999999999986
No 19
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.90 E-value=2.2e-23 Score=136.55 Aligned_cols=101 Identities=28% Similarity=0.453 Sum_probs=77.3
Q ss_pred cCHHHHHHHHhC-CCEEEEcCChhhH-hcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHH
Q 031359 52 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 129 (161)
Q Consensus 52 i~~~~~~~~~~~-~~~liDvR~~~e~-~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~ 129 (161)
++++++.+++++ +.+|||+|++.+| ..||||||+|+|+..+.. ....... .....++++++|||||.+|.+|..
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~-~~~~~~~---~~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF-WADPDSP---YHKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh-hcCcccc---ccccCCCCCCeEEEEcCCCCcHHH
Confidence 467788887764 5889999999998 579999999999732110 0000000 001136789999999999999999
Q ss_pred HHHHHHHCCCcceeEecccHHHHhhCC
Q 031359 130 AATDLLNAGFAGITDIAGGFAAWRQNG 156 (161)
Q Consensus 130 ~~~~L~~~G~~~v~~l~GG~~~W~~~g 156 (161)
+++.|+.+||++|++|+||+.+|..+|
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 999999999999999999999998765
No 20
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.90 E-value=2.6e-23 Score=161.54 Aligned_cols=110 Identities=16% Similarity=0.300 Sum_probs=92.0
Q ss_pred cCHHHHHHHHhC-CCEEEEcCChhhH-----------hcCCCCCcEEecccccc-CCCCCCCHHHHHHHHhc--CCCCCe
Q 031359 52 VPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDE 116 (161)
Q Consensus 52 i~~~~~~~~~~~-~~~liDvR~~~e~-----------~~ghIpgA~nip~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~ 116 (161)
++.+++.+.++. +.+|||+|++.+| ..||||||+|+|+..++ ..+.+.+.+.++..+.. ++++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~ 271 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP 271 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence 566777777654 4789999999998 46999999999986544 23556777888887764 678999
Q ss_pred EEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHHhhC-CCCCCC
Q 031359 117 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GLPTEP 161 (161)
Q Consensus 117 ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~-g~p~~~ 161 (161)
||+||++|.+|+.++..|+.+||++|++|+|||.+|... .+|+++
T Consensus 272 iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~ 317 (320)
T PLN02723 272 IVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT 317 (320)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence 999999999999999999999999999999999999876 578763
No 21
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.1e-23 Score=157.09 Aligned_cols=141 Identities=23% Similarity=0.377 Sum_probs=108.7
Q ss_pred cceeecccccccccccccccccccc----------cCCCcccCHHHHHHHHhCC-CEEEEcCChhhHhc----------C
Q 031359 21 DNIGFISSKILSFCPKASLRGNLEA----------VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA----------G 79 (161)
Q Consensus 21 ~~~~~l~gg~~~w~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~----------g 79 (161)
.-+.+|+||++.|.++.-+...... .......+...++...+.. .+|||+|++++|.. |
T Consensus 117 ~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~G 196 (285)
T COG2897 117 ENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAG 196 (285)
T ss_pred CceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCC
Confidence 3467899999999987644332111 0111234445565555544 67899999999998 9
Q ss_pred CCCCcEEeccccccCC-CCCCCHHHHHHHHh--cCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHHhhC-
Q 031359 80 HATGAINVPYMYRVGS-GMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN- 155 (161)
Q Consensus 80 hIpgA~nip~~~~~~~-~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~- 155 (161)
|||||+|+|+..++.+ .++..++.++.+.. .++++++||+||++|.+|+..+..|+.+|+.++++|+|+|.+|.+.
T Consensus 197 HIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~ 276 (285)
T COG2897 197 HIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDP 276 (285)
T ss_pred CCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCC
Confidence 9999999999777654 55667777777764 3889999999999999999999999999998889999999999876
Q ss_pred CCCCCC
Q 031359 156 GLPTEP 161 (161)
Q Consensus 156 g~p~~~ 161 (161)
+.|+++
T Consensus 277 ~~PV~~ 282 (285)
T COG2897 277 DRPVET 282 (285)
T ss_pred CCcccc
Confidence 558764
No 22
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.90 E-value=8.3e-23 Score=137.97 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=87.2
Q ss_pred cCHHHHHHHHhC-CCEEEEcCCh-------hhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHHhc--CCCCCe
Q 031359 52 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE 116 (161)
Q Consensus 52 i~~~~~~~~~~~-~~~liDvR~~-------~e~~~ghIpgA~nip~~~~~~-----~~~~~~~~~~~~~~~~--l~~~~~ 116 (161)
++++++.+++.. +.+|||+|++ .+|..||||||+|+|+..... .++..+.+.+.+.+.. ++++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT 81 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence 677888888765 5789999999 999999999999999854432 2345555666666553 678999
Q ss_pred EEEEeCC-chhHHHHHHHHHHCCCcceeEecccHHHHhhCC
Q 031359 117 IIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 156 (161)
Q Consensus 117 ivv~c~~-g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g 156 (161)
|||||++ +.++..++..|+.+||++|++|+||+.+|..+|
T Consensus 82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 9999999 589999999999999999999999999998875
No 23
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.89 E-value=6.3e-23 Score=135.00 Aligned_cols=99 Identities=23% Similarity=0.356 Sum_probs=75.9
Q ss_pred cCHHHHHHHHhC---CCEEEEcCChhhHhcCCCCCcEEeccccccCC--CCCCCHHHHHHHHhcCCCCCeEEEEeCCchh
Q 031359 52 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS--GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 126 (161)
Q Consensus 52 i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~ 126 (161)
|+++++++++++ +++|||+|++.+|..||||||+|+|+..+... .....+ ...+. .. ..+++||+||.+|.+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~vv~~c~~g~~ 77 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLP-TVPRL-EN-YKGKIIVIVSHSHKH 77 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccccccc-chHHH-Hh-hcCCeEEEEeCCCcc
Confidence 578888888865 47899999999999999999999998533211 110000 01111 11 137899999999999
Q ss_pred HHHHHHHHHHCCCcceeEecccHHHHh
Q 031359 127 SMMAATDLLNAGFAGITDIAGGFAAWR 153 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v~~l~GG~~~W~ 153 (161)
|..++..|+.+||++|++|+||+.+|+
T Consensus 78 s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 78 AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 999999999999999999999999995
No 24
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.89 E-value=1.1e-22 Score=136.48 Aligned_cols=103 Identities=23% Similarity=0.430 Sum_probs=84.5
Q ss_pred cCHHHHHHHHhC-CCEEEEcCChhhHhc-----------CCCCCcEEeccccccCC-CCCCCHHHHHHHHhc--CCCCCe
Q 031359 52 VPVRVAHELLQA-GHRYLDVRTPEEFSA-----------GHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDE 116 (161)
Q Consensus 52 i~~~~~~~~~~~-~~~liDvR~~~e~~~-----------ghIpgA~nip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~ 116 (161)
++++++.+++++ +++|||+|+..+|.. ||||||+|+|+...... ..+..++.+...+.. ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 467788887755 489999999999987 99999999998544322 234456666666665 467899
Q ss_pred EEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHHhh
Q 031359 117 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 117 ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 154 (161)
||+||++|.+|..++..|+.+||+++++|+||+.+|.+
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 99999999999999999999999999999999999963
No 25
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.89 E-value=9.8e-23 Score=136.88 Aligned_cols=102 Identities=28% Similarity=0.428 Sum_probs=82.7
Q ss_pred cCHHHHHHHHhC--CCEEEEcCChhhHh-cCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHH
Q 031359 52 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 128 (161)
Q Consensus 52 i~~~~~~~~~~~--~~~liDvR~~~e~~-~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~ 128 (161)
++++++.+++++ +.+|||||++.+|+ .||||||+|+|+..+... .....+..++...++++++||+||.+|.+|.
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~ 78 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence 577888888866 48899999999999 999999999998533211 1123344444444578899999999999999
Q ss_pred HHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 129 MAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 129 ~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
.++..|+.+||++++.|.||+.+|+..
T Consensus 79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 79 AAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHHHCCCCeEEECcCceecCCCC
Confidence 999999999999999999999999764
No 26
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.89 E-value=1.8e-22 Score=130.52 Aligned_cols=96 Identities=33% Similarity=0.557 Sum_probs=75.6
Q ss_pred CCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHH--HhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 63 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 63 ~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
++.+|||+|++.+|..||||||+|+|...............+... ....+++++||+||.+|.++..++..|+.+||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 457899999999999999999999998543322111111112222 223578899999999999999999999999999
Q ss_pred ceeEecccHHHHhhCCCC
Q 031359 141 GITDIAGGFAAWRQNGLP 158 (161)
Q Consensus 141 ~v~~l~GG~~~W~~~g~p 158 (161)
+|++|+||+.+|..+|.|
T Consensus 83 ~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 83 NVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred ceEEecCCHHHHHhcCCC
Confidence 999999999999998865
No 27
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.88 E-value=2e-22 Score=136.08 Aligned_cols=92 Identities=28% Similarity=0.402 Sum_probs=77.0
Q ss_pred ccCHHHHHHHHhC-------CCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHh------cCCCCCeE
Q 031359 51 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST------RFRKHDEI 117 (161)
Q Consensus 51 ~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~------~l~~~~~i 117 (161)
.|+++++.+++.+ +++|||||++.||..||||||+|+|.. +.+...+. .++++++|
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v 71 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL 71 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence 5788999888764 478999999999999999999999983 12332221 25789999
Q ss_pred EEEeC-CchhHHHHHHHHHHC------------CCcceeEecccHHHHh
Q 031359 118 IVGCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWR 153 (161)
Q Consensus 118 vv~c~-~g~~a~~~~~~L~~~------------G~~~v~~l~GG~~~W~ 153 (161)
||||. +|.||..++..|++. ||.+|++|+||+.+|.
T Consensus 72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 99997 999999999999985 9999999999999984
No 28
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.88 E-value=2.3e-22 Score=130.44 Aligned_cols=87 Identities=25% Similarity=0.414 Sum_probs=71.1
Q ss_pred hCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcc
Q 031359 62 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG 141 (161)
Q Consensus 62 ~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~ 141 (161)
+++.+|||+|++.+|..||||||+|+|+..+. .....++. +...+++++||+||.+|.++..++..|+..||++
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~-----~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~ 83 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALV-----LRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKP 83 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhc-----CCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCC
Confidence 34588999999999999999999999974221 12233332 3345778999999999999999999999999999
Q ss_pred eeEecccHHHHhh
Q 031359 142 ITDIAGGFAAWRQ 154 (161)
Q Consensus 142 v~~l~GG~~~W~~ 154 (161)
|++|+||+.+|.+
T Consensus 84 v~~l~GG~~~W~~ 96 (96)
T cd01529 84 VALLDGGTSAWVA 96 (96)
T ss_pred EEEeCCCHHHhcC
Confidence 9999999999963
No 29
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.88 E-value=3.9e-22 Score=165.73 Aligned_cols=140 Identities=19% Similarity=0.322 Sum_probs=107.4
Q ss_pred ceeeccccccccccccccccc---------cc-ccCCCcccCHHHHHHHHhC-CCEEEEcCChhhHh--------cCCCC
Q 031359 22 NIGFISSKILSFCPKASLRGN---------LE-AVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHAT 82 (161)
Q Consensus 22 ~~~~l~gg~~~w~~~~~~~~~---------~~-~~~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~--------~ghIp 82 (161)
.+.+|+||+.+|..+..+... +. .......++.+++++.+++ +.+|||+|++++|. .||||
T Consensus 109 ~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIP 188 (610)
T PRK09629 109 GYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIP 188 (610)
T ss_pred CEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCC
Confidence 356799999999976532211 10 0011124667788777754 47899999999995 69999
Q ss_pred CcEEecccccc-CCCCCCCHHHHHHHHhc--CCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHHhhC-CCC
Q 031359 83 GAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GLP 158 (161)
Q Consensus 83 gA~nip~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~-g~p 158 (161)
||+|+|+...+ ..+.+..++.+++++.. ++++++||+||++|.+|+.++..|+.+||++|++|+|||.+|... ++|
T Consensus 189 GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lP 268 (610)
T PRK09629 189 GAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTP 268 (610)
T ss_pred CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCc
Confidence 99999985443 23445667778877765 578999999999999999999999999999999999999999875 678
Q ss_pred CCC
Q 031359 159 TEP 161 (161)
Q Consensus 159 ~~~ 161 (161)
+++
T Consensus 269 v~~ 271 (610)
T PRK09629 269 VEV 271 (610)
T ss_pred ccc
Confidence 763
No 30
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.88 E-value=4.5e-22 Score=131.90 Aligned_cols=103 Identities=31% Similarity=0.540 Sum_probs=78.7
Q ss_pred CHHHHHHHH-hCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHH----HHHHHhcCCCCCeEEEEeCCchhH
Q 031359 53 PVRVAHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEIIVGCQSGKRS 127 (161)
Q Consensus 53 ~~~~~~~~~-~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ivv~c~~g~~a 127 (161)
|++++++++ +++.+|||+|++.+|..||||||+|+|+.............. +......++++++|||||.+|.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~ 80 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence 578888888 445899999999999999999999999954422222222222 233334467888999999888777
Q ss_pred HHHHHH-----HHHCCCcceeEecccHHHHhhC
Q 031359 128 MMAATD-----LLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 128 ~~~~~~-----L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
..++.. |..+||++|++|+||+.+|.++
T Consensus 81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 766665 8999999999999999999863
No 31
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.88 E-value=5.9e-22 Score=157.08 Aligned_cols=100 Identities=34% Similarity=0.591 Sum_probs=88.1
Q ss_pred cccCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEeCCchhH
Q 031359 50 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRS 127 (161)
Q Consensus 50 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~a 127 (161)
..++++++.++++++.+|||+|+++||..||||||+|+|+ ..+...... .+++++||+||.+|.+|
T Consensus 3 ~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~------------~~l~~~~~~~~~~~~~~IvvyC~~G~rs 70 (376)
T PRK08762 3 REISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPR------------GFLELRIETHLPDRDREIVLICASGTRS 70 (376)
T ss_pred ceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCH------------HHHHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence 4688899999988889999999999999999999999998 334444333 26789999999999999
Q ss_pred HHHHHHHHHCCCcceeEecccHHHHhhCCCCCCC
Q 031359 128 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 161 (161)
Q Consensus 128 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 161 (161)
..++..|+..||++|++|+||+.+|.++|+|+++
T Consensus 71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 104 (376)
T PRK08762 71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLER 104 (376)
T ss_pred HHHHHHHHHcCCCceEeecCcHHHHHhcCCcccc
Confidence 9999999999999999999999999999999863
No 32
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.87 E-value=1.5e-21 Score=134.61 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=82.8
Q ss_pred cCHHHHHHHHh-----CCCEEEEcCCh--------hhHhc------------CCCCCcEEeccccccC-C----CCCCCH
Q 031359 52 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVG-S----GMTKNL 101 (161)
Q Consensus 52 i~~~~~~~~~~-----~~~~liDvR~~--------~e~~~------------ghIpgA~nip~~~~~~-~----~~~~~~ 101 (161)
++.+++.+.++ ++++|||+|.. .+|.. ||||||+|+|+..+.. . ......
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 46777887776 35889999987 89988 9999999999854321 1 234445
Q ss_pred HHHHHHHhc--CCCCCeEEEEeCC---chhHHHHHHHHHHCCCcceeEecccHHHHh
Q 031359 102 KFVEEVSTR--FRKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWR 153 (161)
Q Consensus 102 ~~~~~~~~~--l~~~~~ivv~c~~---g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~ 153 (161)
+.+++.+.. ++++++||+||++ |..|.++++.|+.+|+++|++|+||+.+|+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 577777765 5788999999986 788999999999999999999999999996
No 33
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.87 E-value=1.1e-21 Score=126.31 Aligned_cols=80 Identities=26% Similarity=0.459 Sum_probs=66.8
Q ss_pred CCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHH-HHHhcCC-CCCeEEEEeCCchh--HHHHHHHHHHCC
Q 031359 63 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFR-KHDEIIVGCQSGKR--SMMAATDLLNAG 138 (161)
Q Consensus 63 ~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~-~~~~~l~-~~~~ivv~c~~g~~--a~~~~~~L~~~G 138 (161)
++++|||+|++.+|..+|||||+|+|.. .+. .....++ ++++||+||.+|.+ |..++..|++.|
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLS------------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHH------------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 4588999999999999999999999983 222 1222343 58899999999876 689999999999
Q ss_pred CcceeEecccHHHHhh
Q 031359 139 FAGITDIAGGFAAWRQ 154 (161)
Q Consensus 139 ~~~v~~l~GG~~~W~~ 154 (161)
|++|++|+||+.+|.+
T Consensus 77 ~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 77 YTDVALLEGGLQGWRA 92 (92)
T ss_pred ccCEEEccCCHHHHcC
Confidence 9999999999999964
No 34
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.87 E-value=2.6e-21 Score=148.04 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=91.8
Q ss_pred cccCHHHHHHHHhC-CCEEEEcCC----------hhhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHHHHhc--C
Q 031359 50 TSVPVRVAHELLQA-GHRYLDVRT----------PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F 111 (161)
Q Consensus 50 ~~i~~~~~~~~~~~-~~~liDvR~----------~~e~~~ghIpgA~nip~~~~~~~-----~~~~~~~~~~~~~~~--l 111 (161)
..++++++.+.+++ +++|||+|+ +.+|..||||||+|+|+..+... .....++.+++.+.. +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 46889999888865 488999996 78999999999999997543321 233456677777776 4
Q ss_pred CCCCeEEEEeCCch-hHHHHHHHHHHCCCcceeEecccHHHHhhCCCCCCC
Q 031359 112 RKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 161 (161)
Q Consensus 112 ~~~~~ivv~c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 161 (161)
+++++||+||.++. .+.++++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus 85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~ 135 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEE 135 (281)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccC
Confidence 78999999999875 467889999999999999999999999999999863
No 35
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.86 E-value=5.6e-21 Score=158.86 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=94.6
Q ss_pred CcccCHHHHHHHHhCC-CEEEEcCChhhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHHhcC--CCCCeEEEE
Q 031359 49 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTRF--RKHDEIIVG 120 (161)
Q Consensus 49 ~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgA~nip~~~~~-----~~~~~~~~~~~~~~~~~l--~~~~~ivv~ 120 (161)
...++++++.++++++ ++|||+|++.+|..||||||+|+++.... ..+.+.+.+.+++.+..+ +++++||||
T Consensus 8 ~~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvY 87 (610)
T PRK09629 8 SLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVY 87 (610)
T ss_pred CceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEE
Confidence 3578999999998754 88999999999999999999999974321 123455566777777764 789999999
Q ss_pred eCCc-hhHHHHHHHHHHCCCcceeEecccHHHHhhCCCCCCC
Q 031359 121 CQSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 161 (161)
Q Consensus 121 c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 161 (161)
|++| ..+.+++++|+.+|+++|++|+||+.+|..+|+|+++
T Consensus 88 d~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~ 129 (610)
T PRK09629 88 DDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLST 129 (610)
T ss_pred CCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCcccc
Confidence 9976 5788999999999999999999999999999999863
No 36
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.85 E-value=1.2e-20 Score=150.32 Aligned_cols=134 Identities=25% Similarity=0.416 Sum_probs=99.8
Q ss_pred eeeeecCCcccceeecccccccccccccccccccccCCCcccCHHHHHHHHhCC--CEEEEcCChhhHhcCCCCCcEEec
Q 031359 11 LSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVP 88 (161)
Q Consensus 11 ~~~~~~~~~~~~~~~l~gg~~~w~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgA~nip 88 (161)
+++..+|.++.+..+. ++..+|...+.... .......++++++.++++.+ .+|||+|++.||..||||||+|+|
T Consensus 252 ~~~~~~~~C~~~~~~~--~~~~~c~~~~~~~~--~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip 327 (392)
T PRK07878 252 IKIRKDPSTPKITELI--DYEAFCGVVSDEAQ--QAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIP 327 (392)
T ss_pred EeeccCCCCCcccccc--cchhhccccccccc--ccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcC
Confidence 4566666554444333 45666643211111 12344578999999988754 689999999999999999999999
Q ss_pred cccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHHhhCCCC
Q 031359 89 YMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 158 (161)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p 158 (161)
+..+. .......++++++||+||.+|.+|..++..|++.||++|++|+||+.+|..++.+
T Consensus 328 ~~~l~----------~~~~~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 328 KSEIL----------SGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred hHHhc----------chhHHhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 84211 0123456788999999999999999999999999999999999999999987644
No 37
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.8e-21 Score=126.30 Aligned_cols=87 Identities=40% Similarity=0.689 Sum_probs=75.5
Q ss_pred hCCCEEEEcCChhhHhcCCCCC-cEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEeCCchhHHHHHHHHHHCC
Q 031359 62 QAGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAG 138 (161)
Q Consensus 62 ~~~~~liDvR~~~e~~~ghIpg-A~nip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~a~~~~~~L~~~G 138 (161)
.++.+|||||++.||..+|||+ ++|+|... +...... ++++++|||||.+|.+|..++..|+.+|
T Consensus 18 ~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~------------~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G 85 (110)
T COG0607 18 GEDAVLLDVREPEEYERGHIPGAAINIPLSE------------LKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAG 85 (110)
T ss_pred cCCCEEEeccChhHhhhcCCCcceeeeeccc------------chhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcC
Confidence 3458999999999999999999 99999942 2222222 5789999999999999999999999999
Q ss_pred CcceeEecccHHHHhhCCCCCC
Q 031359 139 FAGITDIAGGFAAWRQNGLPTE 160 (161)
Q Consensus 139 ~~~v~~l~GG~~~W~~~g~p~~ 160 (161)
|++++.+.||+.+|..+++|++
T Consensus 86 ~~~~~~l~gG~~~w~~~~~~~~ 107 (110)
T COG0607 86 FTNVYNLDGGIDAWKGAGLPLV 107 (110)
T ss_pred CccccccCCcHHHHHhcCCCcc
Confidence 9988899999999999999876
No 38
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.85 E-value=5.6e-21 Score=121.46 Aligned_cols=80 Identities=43% Similarity=0.678 Sum_probs=69.7
Q ss_pred hCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHH--HhcCCCCCeEEEEeCCchhHHHHHHHHHHCCC
Q 031359 62 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSGKRSMMAATDLLNAGF 139 (161)
Q Consensus 62 ~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~ 139 (161)
.++.+|||+|++.+|..+|||||+|+|+. .+... ....+++++||+||.+|.++..++..|+..||
T Consensus 8 ~~~~~iiD~R~~~~~~~~~i~ga~~~~~~------------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~ 75 (89)
T cd00158 8 DEDAVLLDVREPEEYAAGHIPGAINIPLS------------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGG 75 (89)
T ss_pred CCCeEEEECCCHHHHhccccCCCEecchH------------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHHHhCc
Confidence 44689999999999999999999999983 22222 34567899999999999999999999999999
Q ss_pred cceeEecccHHHHh
Q 031359 140 AGITDIAGGFAAWR 153 (161)
Q Consensus 140 ~~v~~l~GG~~~W~ 153 (161)
.++++|.||+.+|.
T Consensus 76 ~~v~~l~gG~~~w~ 89 (89)
T cd00158 76 TNVYNLEGGMLAWK 89 (89)
T ss_pred ccEEEecCChhhcC
Confidence 99999999999994
No 39
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.85 E-value=1e-20 Score=123.72 Aligned_cols=79 Identities=32% Similarity=0.558 Sum_probs=67.5
Q ss_pred CCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 63 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 63 ~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
....+||+|++++|..||||||+|+|+. .+...... .+++++||+||.+|.+|..++..|+++||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 4477999999999999999999999983 34444443 246789999999999999999999999999
Q ss_pred ceeEecccHHHHhh
Q 031359 141 GITDIAGGFAAWRQ 154 (161)
Q Consensus 141 ~v~~l~GG~~~W~~ 154 (161)
+++++ ||+.+|..
T Consensus 85 ~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 85 HAENA-GGIKDIAM 97 (101)
T ss_pred eEEec-CCHHHhhh
Confidence 99875 99999974
No 40
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.85 E-value=1.4e-20 Score=146.29 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=91.1
Q ss_pred cccCHHHHHHHHhC-CCEEEEcC--------C-hhhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHHhcC--C
Q 031359 50 TSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTRF--R 112 (161)
Q Consensus 50 ~~i~~~~~~~~~~~-~~~liDvR--------~-~~e~~~ghIpgA~nip~~~~~~-----~~~~~~~~~~~~~~~~l--~ 112 (161)
..++++++.+++++ +++|||+| + ..+|..||||||+|+++..+.. ..++..++.+.+.+..+ .
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~ 101 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGIE 101 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCCC
Confidence 47899999998865 48899996 3 3789999999999999754322 13345567777777764 5
Q ss_pred CCCeEEEEeCCch-hHHHHHHHHHHCCCcceeEecccHHHHhhCCCCCCC
Q 031359 113 KHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 161 (161)
Q Consensus 113 ~~~~ivv~c~~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 161 (161)
++++|||||.+|. .+.++++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus 102 ~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~ 151 (320)
T PLN02723 102 NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVES 151 (320)
T ss_pred CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCccc
Confidence 7889999998875 567889999999999999999999999999999863
No 41
>PRK01415 hypothetical protein; Validated
Probab=99.84 E-value=1.4e-20 Score=140.26 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=82.1
Q ss_pred cccCHHHHHHHHhC-CCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHH
Q 031359 50 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 128 (161)
Q Consensus 50 ~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~ 128 (161)
..+++.++.+++++ +++|||||++.||..||||||+|+|...+. ..+.... ....++++++|++||.+|.||.
T Consensus 112 ~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~-----e~~~~~~-~~~~~~k~k~Iv~yCtgGiRs~ 185 (247)
T PRK01415 112 EYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK-----QFPAWVQ-QNQELLKGKKIAMVCTGGIRCE 185 (247)
T ss_pred cccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh-----hhHHHHh-hhhhhcCCCeEEEECCCChHHH
Confidence 47899999998875 588999999999999999999999973110 0011111 1234578999999999999999
Q ss_pred HHHHHHHHCCCcceeEecccHHHHhhCC
Q 031359 129 MAATDLLNAGFAGITDIAGGFAAWRQNG 156 (161)
Q Consensus 129 ~~~~~L~~~G~~~v~~l~GG~~~W~~~g 156 (161)
.++..|++.||++|+.|.||+.+|.++.
T Consensus 186 kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 186 KSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred HHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 9999999999999999999999998753
No 42
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.84 E-value=1.9e-20 Score=122.92 Aligned_cols=78 Identities=31% Similarity=0.532 Sum_probs=66.8
Q ss_pred CCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEeCCchhHHHHHHHHHHCCCcc
Q 031359 64 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFAG 141 (161)
Q Consensus 64 ~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~ 141 (161)
.-.|||+|++++|..||||||+|+|+. .+......+ +++++||+||.+|.+|..++..|.+.||++
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 357999999999999999999999983 344444444 456889999999999999999999999999
Q ss_pred eeEecccHHHHhh
Q 031359 142 ITDIAGGFAAWRQ 154 (161)
Q Consensus 142 v~~l~GG~~~W~~ 154 (161)
+++ .||+.+|..
T Consensus 88 v~~-~GG~~~~~~ 99 (104)
T PRK10287 88 AEN-AGGLKDIAM 99 (104)
T ss_pred EEe-cCCHHHHhh
Confidence 976 699999964
No 43
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.84 E-value=2.4e-20 Score=140.58 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=80.6
Q ss_pred CcccCHHHHHHHHhC-------CCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEe
Q 031359 49 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC 121 (161)
Q Consensus 49 ~~~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c 121 (161)
...++++++.++++. +.+|||||++.||+.||||||+|+|+..+. ..+..+......+ ++++||+||
T Consensus 109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~-----~~~~~l~~~~~~~-kdk~IvvyC 182 (257)
T PRK05320 109 APSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFT-----EFPEALAAHRADL-AGKTVVSFC 182 (257)
T ss_pred CceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhh-----hhHHHHHhhhhhc-CCCeEEEEC
Confidence 457889998888765 268999999999999999999999984110 0111122222223 689999999
Q ss_pred CCchhHHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 122 QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 122 ~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
.+|.||..++..|++.||++|+.|.||+.+|.+.
T Consensus 183 ~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 183 TGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred CCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 9999999999999999999999999999999864
No 44
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.83 E-value=2.9e-20 Score=124.05 Aligned_cols=97 Identities=22% Similarity=0.411 Sum_probs=74.2
Q ss_pred cccCHHHHHHHHhCC---CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEeC-C
Q 031359 50 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ-S 123 (161)
Q Consensus 50 ~~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~-~ 123 (161)
..++++++.+++..+ .+|||+|++ ||..||||||+|+|+..+. ..+.+..... +++++||+||. +
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~ 72 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALS 72 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecC
Confidence 357889999888653 679999999 9999999999999984211 1122222222 56789999998 6
Q ss_pred chhHHHHHHHHHH--------CCCcceeEecccHHHHhhC
Q 031359 124 GKRSMMAATDLLN--------AGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 124 g~~a~~~~~~L~~--------~G~~~v~~l~GG~~~W~~~ 155 (161)
+.++..++..|.+ .|+.+|++|+||+.+|.+.
T Consensus 73 ~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 73 QVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 6788888776643 4999999999999999864
No 45
>PRK07411 hypothetical protein; Validated
Probab=99.82 E-value=1.9e-19 Score=143.13 Aligned_cols=105 Identities=29% Similarity=0.450 Sum_probs=83.7
Q ss_pred CCCcccCHHHHHHHHhCC---CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCC
Q 031359 47 GVPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS 123 (161)
Q Consensus 47 ~~~~~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~ 123 (161)
.....++++++.++++.+ .+|||||++.||..||||||+|+|+..+... ... .....+.++++||+||.+
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~ 351 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENG------PGV-EKVKELLNGHRLIAHCKM 351 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcc------cch-HHHhhcCCCCeEEEECCC
Confidence 445679999999888643 6899999999999999999999998422110 001 123345678999999999
Q ss_pred chhHHHHHHHHHHCCCcceeEecccHHHHhhCCCCC
Q 031359 124 GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 159 (161)
Q Consensus 124 g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 159 (161)
|.||..++..|++.||++ +.|.||+.+|.++..|.
T Consensus 352 G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 352 GGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred CHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 999999999999999985 57999999999886654
No 46
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.81 E-value=2.3e-19 Score=138.83 Aligned_cols=101 Identities=23% Similarity=0.342 Sum_probs=80.8
Q ss_pred CcccCHHHHHHHHhC-CCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhH
Q 031359 49 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 127 (161)
Q Consensus 49 ~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a 127 (161)
...++++++.+++++ +++|||||++.||..||||||+|+|+..+. ..+..+.... ...++++||+||.+|.|+
T Consensus 111 ~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~-----~~~~~l~~~~-~~~kdk~IvvyC~~G~Rs 184 (314)
T PRK00142 111 GTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR-----EFPPWVEENL-DPLKDKKVVMYCTGGIRC 184 (314)
T ss_pred CcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh-----hhHHHHHHhc-CCCCcCeEEEECCCCcHH
Confidence 357889999888765 488999999999999999999999984211 0111111111 234789999999999999
Q ss_pred HHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 128 MMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 128 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
..++..|++.||++|+.|+||+.+|.+.
T Consensus 185 ~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 185 EKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 9999999999999999999999999764
No 47
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.80 E-value=1.3e-19 Score=120.96 Aligned_cols=94 Identities=24% Similarity=0.333 Sum_probs=69.8
Q ss_pred ccCHHHHHHHHhCC-------CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEe
Q 031359 51 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGC 121 (161)
Q Consensus 51 ~i~~~~~~~~~~~~-------~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c 121 (161)
.+++++++++++++ .+|||||++ ||..||||||+|+|+..+ .+.+.+....+ .+.++||+||
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~--------~~~~~~~~~~~~~~~~~~iv~~C 73 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSC--------YQTLPQVYALFSLAGVKLAIFYC 73 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHH--------HHHHHHHHHHhhhcCCCEEEEEC
Confidence 57889999988764 689999999 999999999999998421 11122222222 3467899999
Q ss_pred CC-chhHHHHHHHHH----HCCC--cceeEecccHHHHh
Q 031359 122 QS-GKRSMMAATDLL----NAGF--AGITDIAGGFAAWR 153 (161)
Q Consensus 122 ~~-g~~a~~~~~~L~----~~G~--~~v~~l~GG~~~W~ 153 (161)
.+ |.+|..++..|. +.|| .++++|+||+.+|.
T Consensus 74 ~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 74 GSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred CCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 96 578777665543 4575 68999999999995
No 48
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.79 E-value=5.7e-19 Score=137.97 Aligned_cols=104 Identities=28% Similarity=0.422 Sum_probs=78.5
Q ss_pred CHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccCC----------C---------CCCC---HHHHHHHHhc
Q 031359 53 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G---------MTKN---LKFVEEVSTR 110 (161)
Q Consensus 53 ~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~----------~---------~~~~---~~~~~~~~~~ 110 (161)
...++.++..++.+|||||++.||..||||||+|+|+.+..+. + .+.. ...+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~ 83 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWAD 83 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHh
Confidence 3567777777889999999999999999999999998432110 0 0011 1112222233
Q ss_pred CC-CCCeEEEEeC-CchhHHHHHHHHHHCCCcceeEecccHHHHhhCCC
Q 031359 111 FR-KHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL 157 (161)
Q Consensus 111 l~-~~~~ivv~c~-~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~ 157 (161)
++ ++++||+||. +|.||..+++.|...|| +++.|+||+.+|+..+.
T Consensus 84 ~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~ 131 (345)
T PRK11784 84 FPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVI 131 (345)
T ss_pred cccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhH
Confidence 33 7889999995 78999999999999999 58999999999998764
No 49
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.5e-18 Score=131.66 Aligned_cols=114 Identities=23% Similarity=0.279 Sum_probs=95.1
Q ss_pred CCcccCHHHHHHHHhC------CCEEEEcCCh--hhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHHhc--CC
Q 031359 48 VPTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR 112 (161)
Q Consensus 48 ~~~~i~~~~~~~~~~~------~~~liDvR~~--~e~~~ghIpgA~nip~~~~~~-----~~~~~~~~~~~~~~~~--l~ 112 (161)
....++++.+.+.+++ +..+++++.. .+|..+|||||+++++..... ..++.+++.+..++.. +.
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~ 88 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR 88 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 4457899999887753 4556666655 899999999999999865542 4667888888888886 57
Q ss_pred CCCeEEEEeCC-chhHHHHHHHHHHCCCcceeEecccHHHHhhCCCCCCC
Q 031359 113 KHDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 161 (161)
Q Consensus 113 ~~~~ivv~c~~-g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 161 (161)
.+.+||+|.+. +..|.+++++|+.+|+++|++|+||+.+|.++|+|+++
T Consensus 89 ~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~ 138 (285)
T COG2897 89 NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET 138 (285)
T ss_pred CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence 89999999875 46788999999999999999999999999999999974
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.78 E-value=1.2e-18 Score=137.20 Aligned_cols=93 Identities=33% Similarity=0.550 Sum_probs=77.4
Q ss_pred CcccCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHH--hcCCCCCeEEEEeCCchh
Q 031359 49 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIVGCQSGKR 126 (161)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~--~~l~~~~~ivv~c~~g~~ 126 (161)
...++.+++.++ ..+.+|||+|+++||..+|||||+|+|+.. +.... ..++++++||+||++|.+
T Consensus 260 ~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~~------------l~~~~~~~~~~~~~~IvvyC~~G~r 326 (355)
T PRK05597 260 GEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLSA------------IREGANPPSVSAGDEVVVYCAAGVR 326 (355)
T ss_pred ccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHHH------------hhhccccccCCCCCeEEEEcCCCHH
Confidence 346777777744 456789999999999999999999999842 22111 135678999999999999
Q ss_pred HHHHHHHHHHCCCcceeEecccHHHHhh
Q 031359 127 SMMAATDLLNAGFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 154 (161)
|..++..|++.||++|++|+||+.+|.+
T Consensus 327 S~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 327 SAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred HHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 9999999999999999999999999975
No 51
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.77 E-value=1.8e-18 Score=133.49 Aligned_cols=95 Identities=29% Similarity=0.435 Sum_probs=70.5
Q ss_pred CCEEEEcCChhhHhcCCCCCcEEeccccccCC---CC-------------------CCCHHHHHHHHhcCCCCCeEEEEe
Q 031359 64 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---GM-------------------TKNLKFVEEVSTRFRKHDEIIVGC 121 (161)
Q Consensus 64 ~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~---~~-------------------~~~~~~~~~~~~~l~~~~~ivv~c 121 (161)
..+|||||++.||..||||||+|+|+.+..+. ++ ..-+..+.++....+++..||+||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 36799999999999999999999998432110 00 001122333333345566699999
Q ss_pred C-CchhHHHHHHHHHHCCCcceeEecccHHHHhhCCCCC
Q 031359 122 Q-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 159 (161)
Q Consensus 122 ~-~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 159 (161)
. +|.+|..+++.|+.+|| ++++|+||+.+|+..+.+.
T Consensus 82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~ 119 (311)
T TIGR03167 82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQ 119 (311)
T ss_pred CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhh
Confidence 5 78999999999999999 6999999999999877543
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.75 E-value=9.7e-18 Score=114.75 Aligned_cols=101 Identities=20% Similarity=0.176 Sum_probs=73.5
Q ss_pred cCHHHHHHHHhC---CCEEEEcCChhhHhcCCCCCcEEeccccccCCC----------CCCCHHHHHHHHhcCCCCCeEE
Q 031359 52 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----------MTKNLKFVEEVSTRFRKHDEII 118 (161)
Q Consensus 52 i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~iv 118 (161)
|+++++.++++. +.+|||+|+..+|..||||||+|+|+....... +...++.... +... ++++||
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~VV 79 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDR-LRRG-ESLAVV 79 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHH-HhcC-CCCeEE
Confidence 678888888864 478999999999999999999999985322110 1112222222 2222 578999
Q ss_pred EEeCCchh---------HHHHHHHHHH--CCCcceeEecccHHHHhh
Q 031359 119 VGCQSGKR---------SMMAATDLLN--AGFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 119 v~c~~g~~---------a~~~~~~L~~--~G~~~v~~l~GG~~~W~~ 154 (161)
|||.++.+ +..++..|.. .|+.+|++|+||+.+|.+
T Consensus 80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 99997754 5566777777 467889999999999976
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.70 E-value=6.3e-17 Score=127.86 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=72.2
Q ss_pred ccCHHHHHHHHhCC-CEEEEcCChhhHhcCCCC---CcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchh
Q 031359 51 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 126 (161)
Q Consensus 51 ~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIp---gA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~ 126 (161)
.++++++.++++++ .+|||||++.||..|||| ||+|+|+..+.. ..+. ......++++ +|||||.+|.|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~-----~~~~-~~~l~~~~~~-~Ivv~C~sG~R 344 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITD-----DADI-LHALSPIDGD-NVVVYCASGIR 344 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhc-----chhh-hhhccccCCC-cEEEECCCChh
Confidence 57888888887665 689999999999999998 599999832100 0000 1122334444 89999999999
Q ss_pred HHHHHHHHHHCCCcc-eeEecccHH
Q 031359 127 SMMAATDLLNAGFAG-ITDIAGGFA 150 (161)
Q Consensus 127 a~~~~~~L~~~G~~~-v~~l~GG~~ 150 (161)
|..++..|++.||++ |++|.||+.
T Consensus 345 S~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 345 SADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred HHHHHHHHHHcCCCCceEEeccccC
Confidence 999999999999986 999999975
No 54
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.60 E-value=3.4e-15 Score=111.70 Aligned_cols=134 Identities=18% Similarity=0.335 Sum_probs=98.2
Q ss_pred cceeecccccccccccccccccccc-cCCCc-----ccCHHHHHHH--------HhCCCEEEEcCChhhHh---------
Q 031359 21 DNIGFISSKILSFCPKASLRGNLEA-VGVPT-----SVPVRVAHEL--------LQAGHRYLDVRTPEEFS--------- 77 (161)
Q Consensus 21 ~~~~~l~gg~~~w~~~~~~~~~~~~-~~~~~-----~i~~~~~~~~--------~~~~~~liDvR~~~e~~--------- 77 (161)
..+=+|+||+..|++.+.+..+-.. .+... .+....+..+ ..+++.+||+|...+|.
T Consensus 115 ~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~ 194 (286)
T KOG1529|consen 115 TKVSLLNGGFRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSG 194 (286)
T ss_pred cEEEEecCcHHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCccc
Confidence 4455789999999988755553332 12111 2222222222 12348899999999986
Q ss_pred --cCCCCCcEEeccccccCCCC-CCCHHHHHHHHhc--CCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHH
Q 031359 78 --AGHATGAINVPYMYRVGSGM-TKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 78 --~ghIpgA~nip~~~~~~~~~-~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W 152 (161)
.||||||+|+|+..++.+.. ...++.+..++.. +..++++|+.|+.|..++..+..|.+.| .++.+|+|+|.+|
T Consensus 195 ~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew 273 (286)
T KOG1529|consen 195 ATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEW 273 (286)
T ss_pred CcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHH
Confidence 69999999999987775543 3336667766554 5678999999999999999999999999 6799999999999
Q ss_pred hhC
Q 031359 153 RQN 155 (161)
Q Consensus 153 ~~~ 155 (161)
...
T Consensus 274 ~~~ 276 (286)
T KOG1529|consen 274 ALR 276 (286)
T ss_pred hhc
Confidence 853
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.59 E-value=7e-15 Score=120.04 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=66.6
Q ss_pred HHHhCCCEEEEcCChhhHhcCCCCC----cEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHH
Q 031359 59 ELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDL 134 (161)
Q Consensus 59 ~~~~~~~~liDvR~~~e~~~ghIpg----A~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L 134 (161)
+.+.++.++||+|+++||..+|||| |+|+|+ ..+......++++++||+||.+|.+|..++..|
T Consensus 402 ~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~------------~~l~~~~~~l~~~~~iivyC~~G~rS~~aa~~L 469 (482)
T PRK01269 402 SELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPF------------YKLSTQFGDLDQSKTYLLYCDRGVMSRLQALYL 469 (482)
T ss_pred HhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCH------------HHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHH
Confidence 3345678999999999999999999 999998 344455566788999999999999999999999
Q ss_pred HHCCCcceeEecc
Q 031359 135 LNAGFAGITDIAG 147 (161)
Q Consensus 135 ~~~G~~~v~~l~G 147 (161)
+.+||+||++|.+
T Consensus 470 ~~~G~~nv~~y~~ 482 (482)
T PRK01269 470 REQGFSNVKVYRP 482 (482)
T ss_pred HHcCCccEEecCC
Confidence 9999999998753
No 56
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.52 E-value=4e-14 Score=108.42 Aligned_cols=124 Identities=23% Similarity=0.357 Sum_probs=93.0
Q ss_pred ccccccccccccc-cccccCCCcccCHHHHHHHHhCC--CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHH
Q 031359 29 KILSFCPKASLRG-NLEAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE 105 (161)
Q Consensus 29 g~~~w~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~ 105 (161)
.|..+|....... .+.-+.....++..+++++++.+ .++||||++.+|+..|+|+|+|||+..+... . -+
T Consensus 295 dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~------~-~~ 367 (427)
T KOG2017|consen 295 DYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSR------S-GK 367 (427)
T ss_pred chhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhh------h-hh
Confidence 5888887654444 45555666789999999999874 7899999999999999999999999422110 0 01
Q ss_pred HHHhcC-CCCCeEEEEeCCchhHHHHHHHHHHCCCc-ceeEecccHHHHhhCCCCC
Q 031359 106 EVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAGGFAAWRQNGLPT 159 (161)
Q Consensus 106 ~~~~~l-~~~~~ivv~c~~g~~a~~~~~~L~~~G~~-~v~~l~GG~~~W~~~g~p~ 159 (161)
+....+ ....+|+|+|..|+.|.++++.|++...+ +|+.+-||+.+|...-.|.
T Consensus 368 ~~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~ 423 (427)
T KOG2017|consen 368 KLQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPN 423 (427)
T ss_pred hhcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcC
Confidence 222222 34577999999999999999999987654 5667889999998765443
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.47 E-value=5.9e-14 Score=105.65 Aligned_cols=100 Identities=23% Similarity=0.348 Sum_probs=81.5
Q ss_pred cccCHHHHHHHHhC-CCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHH
Q 031359 50 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 128 (161)
Q Consensus 50 ~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~ 128 (161)
..++|+++.+++.+ +.++||+|...||+.||..||++.+.. ++...+..+.+..+.+ ++++|+.||.+|.|..
T Consensus 113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~-----tFrefP~~v~~~~~~~-~~KkVvmyCTGGIRCE 186 (308)
T COG1054 113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIE-----TFREFPAWVEENLDLL-KDKKVVMYCTGGIRCE 186 (308)
T ss_pred CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChh-----hhhhhHHHHHHHHHhc-cCCcEEEEcCCceeeh
Confidence 46788999888855 589999999999999999999999973 2222334444444444 4669999999999999
Q ss_pred HHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 129 MAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 129 ~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
.+..+|...||++|+.|+||+-.|.++
T Consensus 187 Kas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 187 KASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred hhHHHHHHhcchhhhcccchHHHHhhh
Confidence 999999999999999999999887654
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.42 E-value=2.2e-12 Score=96.77 Aligned_cols=111 Identities=23% Similarity=0.307 Sum_probs=87.4
Q ss_pred ccCHHHHHHHHhC-CCEEEEcC---------ChhhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHHhc--CCC
Q 031359 51 SVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRK 113 (161)
Q Consensus 51 ~i~~~~~~~~~~~-~~~liDvR---------~~~e~~~ghIpgA~nip~~~~~-----~~~~~~~~~~~~~~~~~--l~~ 113 (161)
.++++.+.+.+.+ +..|||+. ...||..-|||||.++.++... ...++..++.+++.... +.+
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n 85 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDN 85 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCCC
Confidence 5677777777654 58899985 3467888999999999985443 22455565666665554 578
Q ss_pred CCeEEEEeC--Cch-hHHHHHHHHHHCCCcceeEecccHHHHhhCCCCCCC
Q 031359 114 HDEIIVGCQ--SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 161 (161)
Q Consensus 114 ~~~ivv~c~--~g~-~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 161 (161)
++.+|||.+ .|+ .|.+++++++.+|+.+|.+|+||+..|+++|+|+++
T Consensus 86 ~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s 136 (286)
T KOG1529|consen 86 GDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDS 136 (286)
T ss_pred CCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccc
Confidence 889999988 564 577999999999999999999999999999999864
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.1e-12 Score=100.16 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=74.1
Q ss_pred CCCcccCHHHHHHHHhCC-------CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc---C---CC
Q 031359 47 GVPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---F---RK 113 (161)
Q Consensus 47 ~~~~~i~~~~~~~~~~~~-------~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~---l---~~ 113 (161)
.....|+++.++.++.+. ++|||+|-+.||.+|||+||+|++.. +.+...+-. + .+
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~~ 221 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGSK 221 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhccccccccccC
Confidence 445689999999998652 56899999999999999999999974 222222221 1 12
Q ss_pred CCeEEEEeC-CchhHHHHHHHHHH------------CCCcceeEecccHHHHhhC
Q 031359 114 HDEIIVGCQ-SGKRSMMAATDLLN------------AGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 114 ~~~ivv~c~-~g~~a~~~~~~L~~------------~G~~~v~~l~GG~~~W~~~ 155 (161)
...+||||. +..|+-.+|..|+. +-|..+|+|+||+.+|-..
T Consensus 222 ~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 222 RVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred ceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 356899997 66888999999984 3456799999999999653
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.80 E-value=1.8e-08 Score=76.91 Aligned_cols=97 Identities=20% Similarity=0.325 Sum_probs=74.5
Q ss_pred CCCcccCHHHHHHHHhCC-------CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeE
Q 031359 47 GVPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEI 117 (161)
Q Consensus 47 ~~~~~i~~~~~~~~~~~~-------~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~i 117 (161)
...+.|+++.++.+++.. .+|||+|-+.||.+|||-.|+||.-. ..+...+.. +.--.-+
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aL 307 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRAL 307 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeE
Confidence 345689999999988753 56999999999999999999999863 334444332 3334568
Q ss_pred EEEeC-CchhHHHHHHHHHHC------------CCcceeEecccHHHHhh
Q 031359 118 IVGCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 118 vv~c~-~g~~a~~~~~~L~~~------------G~~~v~~l~GG~~~W~~ 154 (161)
|+.|. +..|+...|..|+.+ -|..|++|+||+...-.
T Consensus 308 ifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 308 IFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred EEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 99998 568999999999863 34569999999987643
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.79 E-value=4.5e-05 Score=58.00 Aligned_cols=100 Identities=29% Similarity=0.361 Sum_probs=64.2
Q ss_pred CHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccC---------CCCCCCH----------HHHH---HHHhc
Q 031359 53 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG---------SGMTKNL----------KFVE---EVSTR 110 (161)
Q Consensus 53 ~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~---------~~~~~~~----------~~~~---~~~~~ 110 (161)
+.+.+..+......+||||.+.+|..|+.|+++|+|..+..+ ....... +... ..+..
T Consensus 4 ~~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~ 83 (334)
T COG2603 4 TEQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKA 83 (334)
T ss_pred hHHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345566777777889999999999999999999999743321 0010000 0000 11111
Q ss_pred CCCCCeEEEEeC-CchhHHHHHHHH-HHCCCcceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQ-SGKRSMMAATDL-LNAGFAGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~-~g~~a~~~~~~L-~~~G~~~v~~l~GG~~~W~ 153 (161)
+--+.++-++|. +|.++...+..| ...|++-++ +.||+.+.+
T Consensus 84 f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~r-~iGGeKalr 127 (334)
T COG2603 84 FQEENPVGILCARGGLRSKIVQKWLGYAAGIDYPR-VIGGEKALR 127 (334)
T ss_pred HHHhCCcceeeccccchhHHHHHHHHHHHHhhhhh-hhchHHHHH
Confidence 123455656687 568999999999 777876443 679987754
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.56 E-value=0.00088 Score=44.28 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=40.8
Q ss_pred cccCHHHHHHHHhCC-CEEEEcCChhhHhcCCCC--------------CcEEeccccccCCCCCCCHHHHHHHHhcC-CC
Q 031359 50 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT--------------GAINVPYMYRVGSGMTKNLKFVEEVSTRF-RK 113 (161)
Q Consensus 50 ~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIp--------------gA~nip~~~~~~~~~~~~~~~~~~~~~~l-~~ 113 (161)
..+++++++++.+.| -.||+.|+..|-. +-| .-+++|... .....+.+......+ ..
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~-----~~~~~~~v~~f~~~l~~~ 85 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDG-----GAITEEDVEAFADALESL 85 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----T-----TT--HHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCC-----CCCCHHHHHHHHHHHHhC
Confidence 367999999999999 4699999875521 111 135777631 112333333333322 13
Q ss_pred CCeEEEEeCCchhHHHHHHHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDL 134 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L 134 (161)
.+||++||.+|.|+...|..-
T Consensus 86 ~~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 86 PKPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp TTSEEEE-SCSHHHHHHHHHH
T ss_pred CCCEEEECCCChhHHHHHHHH
Confidence 569999999999996665543
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.50 E-value=0.0011 Score=45.38 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=51.3
Q ss_pred cccCHHHHHHHHhCC-CEEEEcCChhhHhcCCC----------CC--cEEeccccccCCCCCCCHHHHHHHHhcC-CCCC
Q 031359 50 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHA----------TG--AINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHD 115 (161)
Q Consensus 50 ~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghI----------pg--A~nip~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 115 (161)
..+++++++.+.+.| -.|||.|+..|-....- +| -+++|+.. .. .+++.+......+ ..+.
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~---~~--~~~~~v~~f~~~~~~~~~ 87 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA---GD--ITPDDVETFRAAIGAAEG 87 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC---CC--CCHHHHHHHHHHHHhCCC
Confidence 467888888887778 56999998766432111 23 24666521 11 1333333332222 2368
Q ss_pred eEEEEeCCchhHHHHHHHH-HHCCCc
Q 031359 116 EIIVGCQSGKRSMMAATDL-LNAGFA 140 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L-~~~G~~ 140 (161)
+|+++|.+|.|+..++..+ ...|..
T Consensus 88 pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 88 PVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred CEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 9999999999987766543 334653
No 64
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=96.79 E-value=0.00065 Score=56.19 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=63.8
Q ss_pred cccCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC-----CCCCeEEEEeCCc
Q 031359 50 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-----RKHDEIIVGCQSG 124 (161)
Q Consensus 50 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~ivv~c~~g 124 (161)
+.++.+++..+ ....++|.|...||..+|+++|+|+|+.. .+..+++ +..+ .....++++....
T Consensus 622 prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~~--------~ea~l~~-~~~l~~~~~~~~~~~v~~~~~~ 690 (725)
T KOG1093|consen 622 PRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFNN--------HEADLDW-LRFLPGIVCSEGKKCVVVGKND 690 (725)
T ss_pred ccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCccc--------hHHHHHH-hhcchHhHHhhCCeEEEeccch
Confidence 45666665554 34679999999999999999999999941 1112222 1111 2355667766666
Q ss_pred hhHHHHHHHHHHCCCcceeEecccHHHHhh
Q 031359 125 KRSMMAATDLLNAGFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 125 ~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 154 (161)
..+++....+..+-+.++.++++|+.+...
T Consensus 691 K~~~e~~~~~~~mk~p~~cil~~~~~~~~~ 720 (725)
T KOG1093|consen 691 KHAAERLTELYVMKVPRICILHDGFNNIDP 720 (725)
T ss_pred HHHHHHhhHHHHhcccHHHHHHHHHhhcCc
Confidence 667777777766668888899999986543
No 65
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.64 E-value=0.00027 Score=55.16 Aligned_cols=84 Identities=8% Similarity=0.056 Sum_probs=54.1
Q ss_pred ccCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCC--chhH-
Q 031359 51 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS--GKRS- 127 (161)
Q Consensus 51 ~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~--g~~a- 127 (161)
.-+++++++.+.....++|+|....|+.+||+|++|+|... ...++.++.. .+..+++++.-.. ...-
T Consensus 15 i~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~~--------~~~~~~~l~~-~~~~~~i~l~~~~~~~~~f~ 85 (314)
T PRK00142 15 IEDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIEQ--------TEAYMAWLKA-DPRFADIRFKISEDDGHAFP 85 (314)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHHH--------HHHHHHHHhh-CcCCCCceEEeccccCCCcc
Confidence 45677888887777789999999999999999999999831 1122222222 2224455444332 1222
Q ss_pred ---HHHHHHHHHCCCc-cee
Q 031359 128 ---MMAATDLLNAGFA-GIT 143 (161)
Q Consensus 128 ---~~~~~~L~~~G~~-~v~ 143 (161)
.++...|..+|++ ++.
T Consensus 86 ~l~~~~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 86 RLSVKVRKEIVALGLDDDID 105 (314)
T ss_pred cceeeeeeeeeecCCCCCCC
Confidence 4666677788885 554
No 66
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.26 E-value=0.0093 Score=46.54 Aligned_cols=94 Identities=17% Similarity=0.083 Sum_probs=56.2
Q ss_pred eecccccccccccccccc-------cccccCCCcccCHHHHHHHHhC-CCEEEEcCChhhHhc---CCCC-CcEEecccc
Q 031359 24 GFISSKILSFCPKASLRG-------NLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-GAINVPYMY 91 (161)
Q Consensus 24 ~~l~gg~~~w~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~---ghIp-gA~nip~~~ 91 (161)
-.++||+.+|........ ..........+...++.+.+.. +..|||+|+..+|.+ |||+ +.. |...
T Consensus 103 ~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq~ 180 (311)
T TIGR03167 103 PRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQK 180 (311)
T ss_pred EEecChHHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--CchH
Confidence 358899999985431111 1112223445666776666554 578999999999998 9998 421 2110
Q ss_pred ccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchh
Q 031359 92 RVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 126 (161)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~ 126 (161)
. ....+...+..++++++|++-|.+...
T Consensus 181 ~-------fe~~L~~~l~~~~~~~~i~~e~es~~i 208 (311)
T TIGR03167 181 R-------FENALAEALRRLDPGRPIFVEDESRRI 208 (311)
T ss_pred H-------HHHHHHHHHHhCCCCceEEEEeCchhh
Confidence 0 012333334446777888888887543
No 67
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=95.75 E-value=0.17 Score=35.57 Aligned_cols=95 Identities=18% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhcC---CCCCcE--EeccccccCC------------------------C
Q 031359 47 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG---HATGAI--NVPYMYRVGS------------------------G 96 (161)
Q Consensus 47 ~~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~g---hIpgA~--nip~~~~~~~------------------------~ 96 (161)
+....+++++.+.+.+-+ -.|||.|++.|.... .++|.. |+|....... .
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 104 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE 104 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence 555678889888888666 579999999998753 244543 4554211100 0
Q ss_pred C-CCCHHHHHHHHhcC-CCCCeEEEEeCCc--hhHHHHHHHHHHCCCcc
Q 031359 97 M-TKNLKFVEEVSTRF-RKHDEIIVGCQSG--KRSMMAATDLLNAGFAG 141 (161)
Q Consensus 97 ~-~~~~~~~~~~~~~l-~~~~~ivv~c~~g--~~a~~~~~~L~~~G~~~ 141 (161)
+ ....+.+.+.+..+ +...+++|.|..| .....++..|..+|.+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 105 MLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp GGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred HHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 0 11123333333332 2346999999988 34556677778889864
No 68
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=95.74 E-value=0.032 Score=45.32 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=50.2
Q ss_pred CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHh--------cCC-----CCCeEEEEeCCc-----hh
Q 031359 65 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--------RFR-----KHDEIIVGCQSG-----KR 126 (161)
Q Consensus 65 ~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~--------~l~-----~~~~ivv~c~~g-----~~ 126 (161)
..|||+|+.++|..||+--|.|+.-.. +...++.++.... .+. .+..+.+. ++| +.
T Consensus 327 FFiVDcRpaeqynaGHlstaFhlDc~l-----mlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfm-GsGr~EED~Y 400 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAFHLDCVL-----MLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFM-GSGRDEEDNY 400 (669)
T ss_pred EEEEeccchhhcccccchhhhcccHHH-----HhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEe-ccCcchHHHH
Confidence 568999999999999999999988632 2233333332221 121 23455555 444 22
Q ss_pred -HHHHHHHHHHCCCcceeEecccHHHHh
Q 031359 127 -SMMAATDLLNAGFAGITDIAGGFAAWR 153 (161)
Q Consensus 127 -a~~~~~~L~~~G~~~v~~l~GG~~~W~ 153 (161)
-..+|..|++ +-..|..+.||+....
T Consensus 401 mnMviA~FlQK-nk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 401 MNMVIAMFLQK-NKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHHHHHhc-CceEEEEecchHHHHH
Confidence 2234444444 4457999999998754
No 69
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.19 E-value=0.52 Score=31.57 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=49.6
Q ss_pred CCCcccCHHHHHHHHhCCC-EEEEcCChhhHh-------------cCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC-
Q 031359 47 GVPTSVPVRVAHELLQAGH-RYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF- 111 (161)
Q Consensus 47 ~~~~~i~~~~~~~~~~~~~-~liDvR~~~e~~-------------~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l- 111 (161)
.....++++++.++...+. .||-.||..|=. ...+. -.+||.. .....+...+.....+
T Consensus 11 sVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~ 84 (130)
T COG3453 11 SVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALD 84 (130)
T ss_pred eecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHH
Confidence 3445788999999988884 589999854421 11122 3456652 1112233333333333
Q ss_pred CCCCeEEEEeCCchhHHHHHHHH
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDL 134 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L 134 (161)
..+.||+.||.+|.||..++..-
T Consensus 85 eaegPVlayCrsGtRs~~ly~~~ 107 (130)
T COG3453 85 EAEGPVLAYCRSGTRSLNLYGLG 107 (130)
T ss_pred HhCCCEEeeecCCchHHHHHHHH
Confidence 24689999999999997666543
No 70
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.21 E-value=0.22 Score=37.99 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=53.8
Q ss_pred cCHHHHHHHHhC-CCEEEEcCChhhHhcCCCCCcEEeccccccCC----CCCCCHHHHHHHHh-cCC----CCCeEEEEe
Q 031359 52 VPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----GMTKNLKFVEEVST-RFR----KHDEIIVGC 121 (161)
Q Consensus 52 i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~----~~~~~~~~~~~~~~-~l~----~~~~ivv~c 121 (161)
++..++.+.+.. +.+++|+|+ +..||.+|+|+-+-.++.. +.......+..... ... +...+|.|.
T Consensus 6 ~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vilyD 81 (343)
T KOG1717|consen 6 KSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILYD 81 (343)
T ss_pred HHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeecc
Confidence 456666666654 488999999 7889999999876322200 00000000000000 001 225678887
Q ss_pred CCc--hh-----HHH---HHHHHHHCCCcceeEecccHHHHhhC
Q 031359 122 QSG--KR-----SMM---AATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 122 ~~g--~~-----a~~---~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
.+. .. +.. ....++..|+ .++.|.||+.-++.+
T Consensus 82 ~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 82 ESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE 124 (343)
T ss_pred cccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence 652 11 111 1235566787 488899999877653
No 71
>PLN02727 NAD kinase
Probab=93.07 E-value=0.6 Score=41.50 Aligned_cols=81 Identities=15% Similarity=0.141 Sum_probs=51.1
Q ss_pred cccCHHHHHHHHhCCC-EEEEcCChhhHhcCCC------------CCcEEeccccccCCCCCCCHHHHHHHHhcC-C-CC
Q 031359 50 TSVPVRVAHELLQAGH-RYLDVRTPEEFSAGHA------------TGAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KH 114 (161)
Q Consensus 50 ~~i~~~~~~~~~~~~~-~liDvR~~~e~~~ghI------------pgA~nip~~~~~~~~~~~~~~~~~~~~~~l-~-~~ 114 (161)
..+++++++.+.+.|+ .||+.|+..| ..+.. -.-+++|.. ......++.+.+..+.+ . ..
T Consensus 267 gQpspe~la~LA~~GfKTIINLRpd~E-~~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 267 GQVTEEGLKWLLEKGFKTIVDLRAEIV-KDNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred CCCCHHHHHHHHHCCCeEEEECCCCCc-CCCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhhcC
Confidence 4788999999988885 5999999776 22222 123567652 11233456666665555 2 47
Q ss_pred CeEEEEeCCchhHH--HHHHHHH
Q 031359 115 DEIIVGCQSGKRSM--MAATDLL 135 (161)
Q Consensus 115 ~~ivv~c~~g~~a~--~~~~~L~ 135 (161)
+||+++|.+|.+.. .+|.+|.
T Consensus 342 kPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 342 KPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CCEEEECCCCCchHHHHHHHHHH
Confidence 89999999997332 3444444
No 72
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=91.27 E-value=1.4 Score=29.70 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=41.3
Q ss_pred HHHHHhCC-CEEEEcCChhhHhc-CCCCCcEEeccccccCCCCCCCHHHHHHHHh----cCCCCCeEEEEeCCc-hhHHH
Q 031359 57 AHELLQAG-HRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEIIVGCQSG-KRSMM 129 (161)
Q Consensus 57 ~~~~~~~~-~~liDvR~~~e~~~-ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~----~l~~~~~ivv~c~~g-~~a~~ 129 (161)
++.+.+.+ ..||+++....... ..+ .-+++|..+.. .......+..... ....+.+|+|+|..| .||..
T Consensus 19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~---~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 19 LALLKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDNT---ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred HHHHHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCCC---CCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence 44444556 57999987654211 111 23566663211 1111122222222 235678999999988 36553
Q ss_pred --HHHHHHHCCCc
Q 031359 130 --AATDLLNAGFA 140 (161)
Q Consensus 130 --~~~~L~~~G~~ 140 (161)
++..+...|++
T Consensus 95 v~~~yl~~~~~~~ 107 (138)
T smart00195 95 LIIAYLMKYRNLS 107 (138)
T ss_pred HHHHHHHHHhCCC
Confidence 34455566763
No 73
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=90.31 E-value=1.7 Score=29.06 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=40.6
Q ss_pred HHHHHhCC-CEEEEcCChhhHhcCCCCC--cEEeccccccCCCCCCCHHHHHH----HHhcCCCCCeEEEEeCCch-hHH
Q 031359 57 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEE----VSTRFRKHDEIIVGCQSGK-RSM 128 (161)
Q Consensus 57 ~~~~~~~~-~~liDvR~~~e~~~ghIpg--A~nip~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ivv~c~~g~-~a~ 128 (161)
.+.+...+ ..|||+++..+...-+.+| -.++|+.+.... .....+.. .......+++|+|+|..|. ||.
T Consensus 20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~ 96 (139)
T cd00127 20 KELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQ---DISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSA 96 (139)
T ss_pred HHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCC---ChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhH
Confidence 33444456 5799999887752222222 345665322111 11122222 2222345689999999884 665
Q ss_pred H--HHHHHHHCCC
Q 031359 129 M--AATDLLNAGF 139 (161)
Q Consensus 129 ~--~~~~L~~~G~ 139 (161)
. ++..+...|+
T Consensus 97 ~~~~~~l~~~~~~ 109 (139)
T cd00127 97 TLVIAYLMKTLGL 109 (139)
T ss_pred HHHHHHHHHHcCC
Confidence 3 3344455554
No 74
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.85 E-value=1.3 Score=35.46 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=28.9
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+.+|+++ +.|..+..++..|...|+.++.++++..
T Consensus 135 ~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4556665 7778888999999999999999998874
No 75
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=85.22 E-value=3.3 Score=32.92 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=35.1
Q ss_pred eeccccccccccccc-------ccccccccCCCcccCHHH-HHHHHhCCCEEEEcCChhhHhc---CCCCC
Q 031359 24 GFISSKILSFCPKAS-------LRGNLEAVGVPTSVPVRV-AHELLQAGHRYLDVRTPEEFSA---GHATG 83 (161)
Q Consensus 24 ~~l~gg~~~w~~~~~-------~~~~~~~~~~~~~i~~~~-~~~~~~~~~~liDvR~~~e~~~---ghIpg 83 (161)
-.++||+.+|..... ....+-.....+...... +.++.+.+..+||+|+..+|.+ |+++.
T Consensus 117 ~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~~ 187 (345)
T PRK11784 117 PRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTGSGKTELLQALANAGAQVLDLEGLANHRGSSFGRLGG 187 (345)
T ss_pred EEEcCCHHHHHHhhHHHHhhhcccCceEecCCCCcccHHHHHHHHHhcCCeEEECCchhhhccccccCCCC
Confidence 468899999985321 111121222223333344 4445455788999999999974 55555
No 76
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=84.74 E-value=4.1 Score=28.78 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=24.3
Q ss_pred CCCCeEEEEeCCch---hHHHHHHHHHHCCCcceeE
Q 031359 112 RKHDEIIVGCQSGK---RSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 112 ~~~~~ivv~c~~g~---~a~~~~~~L~~~G~~~v~~ 144 (161)
.+..+|++.|+.|+ .+..+|+.|...|++ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 67789999999874 566889999999996 665
No 77
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=81.57 E-value=2 Score=30.15 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=23.0
Q ss_pred CCCCeEEEEe-C----CchhHHHHHHHHHHCCCcceeEecccHHH
Q 031359 112 RKHDEIIVGC-Q----SGKRSMMAATDLLNAGFAGITDIAGGFAA 151 (161)
Q Consensus 112 ~~~~~ivv~c-~----~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 151 (161)
+++..+++++ . .|.....++..|+++|..+...|+||-..
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 3454555544 4 36777789999999999999999998654
No 78
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=81.46 E-value=2.8 Score=29.95 Aligned_cols=29 Identities=34% Similarity=0.562 Sum_probs=18.0
Q ss_pred CCCCCeEEEEeCCc-hhHH-HHH-HHHHHCCC
Q 031359 111 FRKHDEIIVGCQSG-KRSM-MAA-TDLLNAGF 139 (161)
Q Consensus 111 l~~~~~ivv~c~~g-~~a~-~~~-~~L~~~G~ 139 (161)
+.++..|+|.|..| .||. .++ +.+...|.
T Consensus 102 ~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 102 LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 45677999999987 4544 333 34444343
No 79
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=80.71 E-value=3.8 Score=34.53 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=35.5
Q ss_pred HHHHHHHhcCC--CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 102 KFVEEVSTRFR--KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 102 ~~~~~~~~~l~--~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+....+...+. .+.+||++.+.-..+..+|..|.++|| +++.|+||-
T Consensus 503 ~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 503 EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 33444444332 367788888988888899999999999 599999985
No 80
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=79.54 E-value=6.4 Score=26.09 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=39.1
Q ss_pred HHhCC-CEEEEcCChhhH---hcCCCCCcEEeccccccCCCCCCCHHHHHHHHh-cCCCCCeEEEEeCCc-hhHHH-HHH
Q 031359 60 LLQAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSG-KRSMM-AAT 132 (161)
Q Consensus 60 ~~~~~-~~liDvR~~~e~---~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~-~l~~~~~ivv~c~~g-~~a~~-~~~ 132 (161)
+.+.+ ..||+++...+. ....--.-.++|..+.........-..+...+. ....+.+|+|+|..| .||.. ++.
T Consensus 14 l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 93 (133)
T PF00782_consen 14 LKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAA 93 (133)
T ss_dssp HHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHH
T ss_pred HHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHH
Confidence 33456 468999976443 233333445666533111111111111222222 234678999999988 45543 333
Q ss_pred -HHHHCCC
Q 031359 133 -DLLNAGF 139 (161)
Q Consensus 133 -~L~~~G~ 139 (161)
.+...|.
T Consensus 94 yLm~~~~~ 101 (133)
T PF00782_consen 94 YLMKKNGM 101 (133)
T ss_dssp HHHHHHTS
T ss_pred HHHHHcCC
Confidence 4444565
No 81
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=78.88 E-value=6.4 Score=27.98 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=36.5
Q ss_pred HHHHHHHhCC-CEEEEcCChhhHhcCCCCC-----------cEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeC
Q 031359 55 RVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ 122 (161)
Q Consensus 55 ~~~~~~~~~~-~~liDvR~~~e~~~ghIpg-----------A~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~ 122 (161)
.++.++.+.+ ..||=.-+..|...-.+|+ ..++|+.+.-.+..........++...+..+++|++.|.
T Consensus 62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~ 141 (168)
T PF05706_consen 62 ADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCR 141 (168)
T ss_dssp HHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-S
T ss_pred HHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 4466666666 2344466666666444442 246666332211110001123333334567889999999
Q ss_pred Cc-hhH-HHHHHHHHHCC
Q 031359 123 SG-KRS-MMAATDLLNAG 138 (161)
Q Consensus 123 ~g-~~a-~~~~~~L~~~G 138 (161)
+| .|+ ..||-.|.++|
T Consensus 142 GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 142 GGLGRTGLVAACLLLELG 159 (168)
T ss_dssp SSSSHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 76 444 45666777666
No 82
>PRK12361 hypothetical protein; Provisional
Probab=78.62 E-value=7.5 Score=32.80 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=41.1
Q ss_pred CHHHHHHHHhCC-CEEEEcCChhhHhc-CCCC---CcEEeccccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEeCC
Q 031359 53 PVRVAHELLQAG-HRYLDVRTPEEFSA-GHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQS 123 (161)
Q Consensus 53 ~~~~~~~~~~~~-~~liDvR~~~e~~~-ghIp---gA~nip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~ 123 (161)
++.+...+.+.+ ..|||++.+.+... ...+ .-.++|..+... +..+.+.+.... ...+.+|+|.|..
T Consensus 109 ~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~----p~~~~l~~a~~~i~~~~~~~~~VlVHC~~ 184 (547)
T PRK12361 109 FPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSV----PTLAQLNQAINWIHRQVRANKSVVVHCAL 184 (547)
T ss_pred CcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCC----CcHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 345555665566 57999995322211 1112 345777643222 122333333332 3457889999998
Q ss_pred c-hhHHH-HHHHHH
Q 031359 124 G-KRSMM-AATDLL 135 (161)
Q Consensus 124 g-~~a~~-~~~~L~ 135 (161)
| .||.. ++..|.
T Consensus 185 G~sRSa~vv~ayLm 198 (547)
T PRK12361 185 GRGRSVLVLAAYLL 198 (547)
T ss_pred CCCcHHHHHHHHHH
Confidence 7 45543 344444
No 83
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=78.15 E-value=7.1 Score=29.43 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=42.2
Q ss_pred HHHHHHHhCC-CEEEEcCCh----hhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEeCCc-
Q 031359 55 RVAHELLQAG-HRYLDVRTP----EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSG- 124 (161)
Q Consensus 55 ~~~~~~~~~~-~~liDvR~~----~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~g- 124 (161)
..++++...+ ..||.+..+ ++|..-.|.- .++|+. +...+..+.+.++... +..+..|+|.|..|
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~-~~lpip----Dg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGl 181 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGINV-HELIFP----DGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGL 181 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeE-EEeecC----CCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCC
Confidence 3345555556 457777542 3333322221 234442 1222333433433332 35678999999976
Q ss_pred hh-HHHHHHHHHHCCCc
Q 031359 125 KR-SMMAATDLLNAGFA 140 (161)
Q Consensus 125 ~~-a~~~~~~L~~~G~~ 140 (161)
.| ...++..|.+.|++
T Consensus 182 GRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 182 GRAPVLASIVLIEFGMD 198 (241)
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 34 44566677677764
No 84
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=78.03 E-value=15 Score=25.97 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=17.6
Q ss_pred CCCCeEEEEeCCc-hhHHH-HHHHHHHCC
Q 031359 112 RKHDEIIVGCQSG-KRSMM-AATDLLNAG 138 (161)
Q Consensus 112 ~~~~~ivv~c~~g-~~a~~-~~~~L~~~G 138 (161)
..+.+|+|.|..| .||.. ++..|.+.|
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4588999999987 45543 344554443
No 85
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=77.64 E-value=6.8 Score=29.77 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=39.1
Q ss_pred CCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeE
Q 031359 99 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
...+.++.....+.++..+++||.+-.+.......|++.||.++..
T Consensus 173 ~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 173 DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 4456777788888889999999999999999999999999977653
No 86
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=76.55 E-value=5.6 Score=30.07 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=24.1
Q ss_pred CeEEEEeCCc---hhHHHHHHHHHHCCCcceeEe
Q 031359 115 DEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 115 ~~ivv~c~~g---~~a~~~~~~L~~~G~~~v~~l 145 (161)
++|+|+|+.| ..+-.+|++|...||+ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 6799999865 5677899999999995 6654
No 87
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=76.13 E-value=13 Score=27.32 Aligned_cols=37 Identities=27% Similarity=0.489 Sum_probs=27.4
Q ss_pred HHhcCCC--CCeEEEEeCCc---hhHHHHHHHHHHCCCcceeE
Q 031359 107 VSTRFRK--HDEIIVGCQSG---KRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 107 ~~~~l~~--~~~ivv~c~~g---~~a~~~~~~L~~~G~~~v~~ 144 (161)
....++. ..+|+|+|++| ...-.+|+.|...|++ |.+
T Consensus 40 i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v 81 (203)
T COG0062 40 ILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTV 81 (203)
T ss_pred HHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEE
Confidence 3444554 56899999876 4677899999999985 554
No 88
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=75.76 E-value=11 Score=27.55 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=25.8
Q ss_pred cCCCCCeEEEEeCCc---hhHHHHHHHHHHCCCcceeEe
Q 031359 110 RFRKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 110 ~l~~~~~ivv~c~~g---~~a~~~~~~L~~~G~~~v~~l 145 (161)
.+++.++|+|+|+.| ..+..+|++|...|++ |+.+
T Consensus 41 ~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 41 AFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred HcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 345567899999865 5677889999887764 6654
No 89
>PRK10565 putative carbohydrate kinase; Provisional
Probab=75.41 E-value=9.7 Score=31.95 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=25.7
Q ss_pred CCCCCeEEEEeCCc---hhHHHHHHHHHHCCCcceeEe
Q 031359 111 FRKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 111 l~~~~~ivv~c~~g---~~a~~~~~~L~~~G~~~v~~l 145 (161)
++..++|+|+|+.| ..+..+|+.|...||+ |.++
T Consensus 57 ~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 44556799999865 4667889999999995 6543
No 90
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=74.93 E-value=10 Score=31.41 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=23.9
Q ss_pred CeEEEEeCCc---hhHHHHHHHHHHCCCcceeEe
Q 031359 115 DEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 115 ~~ivv~c~~g---~~a~~~~~~L~~~G~~~v~~l 145 (161)
++|+|+|+.| ..+..+|+.|...||+ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 6799999876 4666899999999996 6543
No 91
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=74.92 E-value=8.8 Score=30.15 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc-ceeEecccH
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAGGF 149 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~-~v~~l~GG~ 149 (161)
.+..+...+.++.+++++|++-..+..++..|++.+.. ++..+.|++
T Consensus 211 ~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 211 SLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred HHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 34444444556778999999988898999999998874 688888886
No 92
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.77 E-value=26 Score=25.31 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=25.6
Q ss_pred ccCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEecc
Q 031359 51 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 89 (161)
Q Consensus 51 ~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~ 89 (161)
.++.++..+.+..++-||||..|.|=.-| -|+||
T Consensus 7 Pin~eEA~eAieGGAdIiDVKNP~EGSLG-----ANFPW 40 (235)
T COG1891 7 PINREEAIEAIEGGADIIDVKNPAEGSLG-----ANFPW 40 (235)
T ss_pred cCCHHHHHHHhhCCCceEeccCcccCccc-----CCChH
Confidence 46778888888889999999998873322 26776
No 93
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.61 E-value=6.1 Score=29.16 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=19.2
Q ss_pred HHHHHHHCCCcceeEec-ccHHHHhhC
Q 031359 130 AATDLLNAGFAGITDIA-GGFAAWRQN 155 (161)
Q Consensus 130 ~~~~L~~~G~~~v~~l~-GG~~~W~~~ 155 (161)
+-..|+.+||.||.+.. .|..+|.+.
T Consensus 110 A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 110 ARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHcCCCceEEEECCcccCCCCC
Confidence 33458889999988655 488888764
No 94
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=73.23 E-value=9.9 Score=25.66 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=27.4
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+++++++ +.|..+..++..|...|+++++++.--.
T Consensus 12 ~~~vlvi-GaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVI-GAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEE-SSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEE-CCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 5667776 6677888899999999999898876543
No 95
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=72.57 E-value=13 Score=31.61 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=23.8
Q ss_pred CeEEEEeCCc---hhHHHHHHHHHHCCCcceeEe
Q 031359 115 DEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 115 ~~ivv~c~~g---~~a~~~~~~L~~~G~~~v~~l 145 (161)
++|+|+|+.| ..+..+|..|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 6799999876 4566899999999995 6654
No 96
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=71.58 E-value=7.9 Score=27.32 Aligned_cols=76 Identities=14% Similarity=0.301 Sum_probs=31.7
Q ss_pred CEEEEcCChh---h---HhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc-C-CCCCeEEEEeCCc-hhHHHHHHHHH
Q 031359 65 HRYLDVRTPE---E---FSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-F-RKHDEIIVGCQSG-KRSMMAATDLL 135 (161)
Q Consensus 65 ~~liDvR~~~---e---~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~-l-~~~~~ivv~c~~g-~~a~~~~~~L~ 135 (161)
-.||.+|+.. + |...+=-.-++++......+.....++.+.+.+.. + +.+.||++.|.+| .|...+...|+
T Consensus 34 KTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lR 113 (164)
T PF03162_consen 34 KTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLR 113 (164)
T ss_dssp SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHH
Confidence 3578888642 2 32233233344444211111122334555555543 3 3578999999987 45556666665
Q ss_pred H-CCCc
Q 031359 136 N-AGFA 140 (161)
Q Consensus 136 ~-~G~~ 140 (161)
+ .|+.
T Consensus 114 k~Q~W~ 119 (164)
T PF03162_consen 114 KLQGWS 119 (164)
T ss_dssp HHTTB-
T ss_pred HHcCCC
Confidence 4 3664
No 97
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=71.25 E-value=29 Score=23.49 Aligned_cols=15 Identities=7% Similarity=-0.226 Sum_probs=8.5
Q ss_pred HHHHHh-CCCEEEEcC
Q 031359 57 AHELLQ-AGHRYLDVR 71 (161)
Q Consensus 57 ~~~~~~-~~~~liDvR 71 (161)
+..++. .++.++|..
T Consensus 22 v~~~l~~~GfeVi~lg 37 (132)
T TIGR00640 22 IATAYADLGFDVDVGP 37 (132)
T ss_pred HHHHHHhCCcEEEECC
Confidence 334443 457777765
No 98
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=70.60 E-value=7.6 Score=24.73 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=24.5
Q ss_pred CCeEEEEeCCchhHHHHHHH----HHHCCCcceeEecccHHH
Q 031359 114 HDEIIVGCQSGKRSMMAATD----LLNAGFAGITDIAGGFAA 151 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~----L~~~G~~~v~~l~GG~~~ 151 (161)
...|++.|++|..+..++.. +++.|++ +.+-..+..+
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~ 43 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGA 43 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHH
Confidence 46799999999776665554 4557874 5555555544
No 99
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=70.53 E-value=23 Score=24.55 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=27.8
Q ss_pred CCCCCeEEEEeCC-c---hhHHHHHHHHHHCCCcceeEecccH
Q 031359 111 FRKHDEIIVGCQS-G---KRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 111 l~~~~~ivv~c~~-g---~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+..+-.+|.+|.. | .....+...|++.|.+++.++-||.
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 3456677888863 3 3455677788999998888777775
No 100
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=69.76 E-value=22 Score=22.88 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
.+.+++++|.+-..+..++..|.+.+. .+..+.|+.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 567899999998888888999988776 477788875
No 101
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=67.26 E-value=27 Score=30.43 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=31.4
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
..++++|+|++-..+...+..|.+.|+. +..|+|...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~-~~~Lhg~~~ 508 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLP-HQVLNAKQD 508 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEeeCCcH
Confidence 3678999999999999999999999995 667888653
No 102
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.83 E-value=15 Score=30.29 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
+++..||||.+-..+..++..|+..|+. +..+.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 4566789999999999999999999984 777888864
No 103
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=65.62 E-value=9.8 Score=24.75 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=23.3
Q ss_pred eEEEEeCCchhHHHHHHHH----HHCCCcceeEecccHHH
Q 031359 116 EIIVGCQSGKRSMMAATDL----LNAGFAGITDIAGGFAA 151 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L----~~~G~~~v~~l~GG~~~ 151 (161)
.|++.|++|..+..++..+ ++.|++ +.+-..+...
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e 41 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATE 41 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 6899999998776666644 557774 5544444443
No 104
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=65.38 E-value=24 Score=24.73 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=31.3
Q ss_pred HHHHhcCCCCCeEEEEeCCc--hhHHHHHHHHHH---CCCcceeEecccHHHH
Q 031359 105 EEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLN---AGFAGITDIAGGFAAW 152 (161)
Q Consensus 105 ~~~~~~l~~~~~ivv~c~~g--~~a~~~~~~L~~---~G~~~v~~l~GG~~~W 152 (161)
+.+...++++..+|+.+..| ..|...|..|.. .|..++..+-||-.+.
T Consensus 58 ~~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 58 ERILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 34555567788888888777 467788887766 6887899888986544
No 105
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=65.26 E-value=26 Score=23.13 Aligned_cols=10 Identities=20% Similarity=0.198 Sum_probs=6.1
Q ss_pred CCCEEEEcCC
Q 031359 63 AGHRYLDVRT 72 (161)
Q Consensus 63 ~~~~liDvR~ 72 (161)
.++.+++...
T Consensus 26 ~G~~vi~lG~ 35 (122)
T cd02071 26 AGFEVIYTGL 35 (122)
T ss_pred CCCEEEECCC
Confidence 4566776654
No 106
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=64.71 E-value=15 Score=26.35 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=27.7
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
.++.|+++++ +|.....++..|.+.|...|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 3578998886 68899999999999999888765
No 107
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=64.20 E-value=16 Score=24.29 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=19.5
Q ss_pred eEEEEeCCc-hhHHHHHHHHHHCCCcceeEecccH
Q 031359 116 EIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 116 ~ivv~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
.|+|+|... -||..|...|+.++-+++.+...|.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~ 36 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGL 36 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 467777543 5666666666665534455555454
No 108
>PTZ00110 helicase; Provisional
Probab=62.61 E-value=22 Score=30.02 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
....+||+|++-..+..++..|+..|+. +..+.|++.
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 5678999999988999999999999985 666888763
No 109
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=62.60 E-value=10 Score=24.45 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=24.2
Q ss_pred eEEEEeCCchhHHHHHHH----HHHCCCcceeEecccHHHH
Q 031359 116 EIIVGCQSGKRSMMAATD----LLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~----L~~~G~~~v~~l~GG~~~W 152 (161)
.|++.|++|..|..++.. +++.|++ +.+...+...-
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHH
Confidence 488999999777766664 4567874 55555555543
No 110
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=61.51 E-value=12 Score=32.06 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.9
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
.+..-|+||.+-..+...+..|...|+ ++..|.||+.
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~-~a~~YHaGl~ 265 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGI-SAGAYHAGLS 265 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCC-ceEEecCCCC
Confidence 456679999999999999999999998 4778999984
No 111
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=61.09 E-value=14 Score=24.21 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=22.6
Q ss_pred EEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 118 IVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 118 vv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
|++.++|.-+.++.+.++++|++-|.++.
T Consensus 5 vLIanrGeia~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 5 VLIANRGEIAVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp EEESS-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHhCCcceeccC
Confidence 55568888899999999999998665543
No 112
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=61.03 E-value=18 Score=29.72 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=28.6
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHC-----CCcceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNA-----GFAGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~-----G~~~v~~l~GG~~~W~ 153 (161)
.+.+...+++|++|..|..+|..|.+. |-..+-.+.|+|.+|.
T Consensus 130 ~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 130 TPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 343335678899998888777766542 5445666778777664
No 113
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=60.99 E-value=8.4 Score=31.83 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=33.7
Q ss_pred EEEEeCCchhHHHHHHHHHHCCCcceeEecccH---------HHHhhCCCCC
Q 031359 117 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF---------AAWRQNGLPT 159 (161)
Q Consensus 117 ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~---------~~W~~~g~p~ 159 (161)
=||||.+......+|..|...|+. ...|..|+ .+|.....||
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~-A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIP-AMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcc-hHHHhcccccchhHHHHHHHhcCCCCE
Confidence 489999999999999999999984 55566666 4687776665
No 114
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=60.98 E-value=12 Score=23.84 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=22.6
Q ss_pred eEEEEeCCchhHHHHHHH----HHHCCCcceeEecccHHH
Q 031359 116 EIIVGCQSGKRSMMAATD----LLNAGFAGITDIAGGFAA 151 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~----L~~~G~~~v~~l~GG~~~ 151 (161)
.|++.|++|..+..++.. +++.|++ +.+-..+...
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~ 39 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESE 39 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 388999999776666654 4556774 5444445444
No 115
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=60.68 E-value=14 Score=22.66 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=17.0
Q ss_pred eEEEEeCCchhHHHHH-H----HHHHCCCc
Q 031359 116 EIIVGCQSGKRSMMAA-T----DLLNAGFA 140 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~-~----~L~~~G~~ 140 (161)
.|++.|++|..+...+ . .+.+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 4899999996544433 4 55667875
No 116
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=60.02 E-value=15 Score=30.37 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=30.0
Q ss_pred CCCeEEEEeCC---chhHHHHHHHHHHCCCcceeEecc
Q 031359 113 KHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 113 ~~~~ivv~c~~---g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+++.||++++| |..+..+..+|+++|-+.|++--+
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 57899999987 889999999999999988876443
No 117
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=59.91 E-value=27 Score=29.35 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=30.0
Q ss_pred eEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 116 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
.+||+|++...+..++..|...||. +..+.|++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 5888999999999999999999984 888999863
No 118
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=59.74 E-value=17 Score=22.97 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=22.6
Q ss_pred eEEEEeCCch-hHHHHHH----HHHHCCCcceeEecccHHHH
Q 031359 116 EIIVGCQSGK-RSMMAAT----DLLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 116 ~ivv~c~~g~-~a~~~~~----~L~~~G~~~v~~l~GG~~~W 152 (161)
.|++.|++|. .|..++. .|.+.|++ +.+......+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~ 44 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEI 44 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHH
Confidence 5899999996 4433344 55667884 55555455443
No 119
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.65 E-value=22 Score=29.03 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHH
Q 031359 104 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 151 (161)
Q Consensus 104 ~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 151 (161)
+-.+..+.. +.+++|+|++...+...+..|+..|+. .-.|.|-+..
T Consensus 291 LV~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq 336 (476)
T KOG0330|consen 291 LVYLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQ 336 (476)
T ss_pred HHHHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhH
Confidence 334444333 478999999999999999999999995 4468887654
No 120
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=59.51 E-value=43 Score=29.45 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=47.7
Q ss_pred CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcce
Q 031359 65 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGI 142 (161)
Q Consensus 65 ~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v 142 (161)
-.||.|++.+|.+.----|+.-|-..+-.-..+..+.....++...+++ .+++++.+|..+..-...|.+.|++-+
T Consensus 162 e~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~--~~~~VsESGI~~~~d~~~l~~~G~dav 237 (695)
T PRK13802 162 TVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPD--DVIKVAESGVFGAVEVEDYARAGADAV 237 (695)
T ss_pred eEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCC--CcEEEEcCCCCCHHHHHHHHHCCCCEE
Confidence 4688999988886433233333322111112223344556666666764 467778999988888889999999754
No 121
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=59.43 E-value=32 Score=21.95 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCchhH-HHHHHHHHHCCCc
Q 031359 102 KFVEEVSTRFRKHDEIIVGCQSGKRS-MMAATDLLNAGFA 140 (161)
Q Consensus 102 ~~~~~~~~~l~~~~~ivv~c~~g~~a-~~~~~~L~~~G~~ 140 (161)
+.++.+.. .+.+++++.+++.++ ...+..|+.+|+.
T Consensus 21 e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 21 EALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 44554444 468899998877555 6788888999985
No 122
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=59.30 E-value=16 Score=31.40 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
++...||||++-..+..++..|...|+. +..+.||+.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4567899999998999999999999984 778888873
No 123
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=58.99 E-value=33 Score=25.69 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHHhcCC---CCCeEEEEeCCchh-HH----HHHHHHHHCCCcceeE
Q 031359 103 FVEEVSTRFR---KHDEIIVGCQSGKR-SM----MAATDLLNAGFAGITD 144 (161)
Q Consensus 103 ~~~~~~~~l~---~~~~ivv~c~~g~~-a~----~~~~~L~~~G~~~v~~ 144 (161)
.++.+.+.++ ++..+|+.|-+... |. ..-.+|...||++|++
T Consensus 123 ~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v 172 (265)
T COG4822 123 CVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFV 172 (265)
T ss_pred HHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEE
Confidence 3444444554 77788999865422 22 2233677889998885
No 124
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=58.60 E-value=18 Score=23.09 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=18.8
Q ss_pred CeEEEEeCCchhHH-----HHHHHHHHCCCc
Q 031359 115 DEIIVGCQSGKRSM-----MAATDLLNAGFA 140 (161)
Q Consensus 115 ~~ivv~c~~g~~a~-----~~~~~L~~~G~~ 140 (161)
..|++.|++|.-+. .+-..|++.|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 46899999985443 344478889995
No 125
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=58.50 E-value=23 Score=32.92 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=31.1
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
+...||||.+-..+..++..|...|+. +..|.||+.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gik-a~~YHAGLs 715 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHK-AAFYHGSMD 715 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCC-eeeeeCCCC
Confidence 456789999988999999999999995 778999974
No 126
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=58.33 E-value=24 Score=27.63 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=23.7
Q ss_pred CCeEEEEeCC----c--hhHHHHHHHHHHCCCcceeEecccHHHHhh
Q 031359 114 HDEIIVGCQS----G--KRSMMAATDLLNAGFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 114 ~~~ivv~c~~----g--~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 154 (161)
+.++|+.+++ | ..+....+.|++.|++ +..+.=|-.+|.-
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~-a~fvaTGQTGimi 156 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGIN-AGFVATGQTGIMI 156 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHC
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCC-ceEEecCCceEEE
Confidence 3455555543 4 3466788899999995 6656556667643
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=57.37 E-value=21 Score=30.94 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
.+..+...+..+..++|+|++-.++..++..|...|+. +..+.|++.
T Consensus 435 L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee-EEEEECCCC
Confidence 33334333456788999999999999999999999984 667777654
No 128
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=57.16 E-value=23 Score=29.57 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=27.9
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
.+..||++ +.|.....+|..|.+.|+.++.++.|+
T Consensus 20 ~~~kIvII-GAG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVII-GAGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEE-CCchHHHHHHHHHHHhCCceEEEEEec
Confidence 35567777 677777788899999999999998864
No 129
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=57.15 E-value=29 Score=29.55 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=30.5
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
+...|+||++-..+..++..|...|+. +..+.||+.
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 567899999988898999999999984 677888864
No 130
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=57.02 E-value=33 Score=25.16 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=34.8
Q ss_pred CCCCCeEEEEeC---CchhHHHHHHHHHHCCCccee---Eec---ccHHHHhhCCCCCC
Q 031359 111 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPTE 160 (161)
Q Consensus 111 l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~p~~ 160 (161)
+.+++.|+++.+ +|.....++..|++.|..-+. +++ ||.......|.|+.
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~ 173 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLS 173 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEE
Confidence 456788999886 688888999999999975322 344 44444445677763
No 131
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=56.88 E-value=19 Score=29.28 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=28.0
Q ss_pred CCCeEEEEeCC---chhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQS---GKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~~---g~~a~~~~~~L~~~G~~~v~~ 144 (161)
.++.||+++++ |+.+..+.++|++.|-++|++
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEEEE
Confidence 47889999987 788999999999999988774
No 132
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=56.60 E-value=24 Score=31.79 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=34.6
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHH
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W 152 (161)
..+++||+|.|.+-..|..++..|.+.|+. ..+|++...+.
T Consensus 441 ~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~-h~vLnak~~q~ 481 (896)
T PRK13104 441 GVRKQPVLVGTVSIEASEFLSQLLKKENIK-HQVLNAKFHEK 481 (896)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEeecCCCChH
Confidence 367899999999999999999999999996 55787776543
No 133
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=56.26 E-value=9 Score=30.36 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=28.5
Q ss_pred CcccCHHHHHHHH-------hCCCEEEEcCChhhHhcCCCCC-cEEec
Q 031359 49 PTSVPVRVAHELL-------QAGHRYLDVRTPEEFSAGHATG-AINVP 88 (161)
Q Consensus 49 ~~~i~~~~~~~~~-------~~~~~liDvR~~~e~~~ghIpg-A~nip 88 (161)
...++++++.+.+ ..+..+||+|++. |+..++|+ ...|-
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr~~i~ 322 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGRVLVH 322 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCCEEEE
Confidence 3568888877766 2357899999988 99888885 33443
No 134
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=56.09 E-value=23 Score=28.72 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=30.2
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
...++|||++...+..++..|...|+ ++..+.|++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~ 289 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDV 289 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCC
Confidence 45789999998889999999999998 488888876
No 135
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=55.88 E-value=29 Score=22.49 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=26.2
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
+++.|+++.+ +|.....+...|++.|.+.|..
T Consensus 87 ~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 87 KGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred cceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 5788888874 7888889999999999876654
No 136
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=55.84 E-value=26 Score=28.48 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=31.2
Q ss_pred HHhcCCCCCeEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 107 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 107 ~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
+.+.++....-|++|++|..|..+|..|.+. |-.++..++|++.+|.
T Consensus 95 L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 143 (433)
T PRK08117 95 LAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT 143 (433)
T ss_pred HHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcC
Confidence 3333434445688899998888777766442 6556777888887764
No 137
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=55.13 E-value=80 Score=25.18 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=45.6
Q ss_pred CEEEEcCChhhHhcC-CCCCcEEeccccccCCCCCCCHHHHHHHHh-----cCCCCCeEEEEeCCchhHHHHHHHHHHCC
Q 031359 65 HRYLDVRTPEEFSAG-HATGAINVPYMYRVGSGMTKNLKFVEEVST-----RFRKHDEIIVGCQSGKRSMMAATDLLNAG 138 (161)
Q Consensus 65 ~~liDvR~~~e~~~g-hIpgA~nip~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~ivv~c~~g~~a~~~~~~L~~~G 138 (161)
-+||.|.+.+|.+.. .+.|+.-|-..+-.-..+..+.+...++.. .+++ +.+++++.+|.....-...|+..|
T Consensus 232 e~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~-~~~~~VsESGI~t~~Dv~~l~~~G 310 (338)
T PLN02460 232 AALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIRE-KGIIVVGESGLFTPDDVAYVQNAG 310 (338)
T ss_pred eEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCC-CCeEEEECCCCCCHHHHHHHHHCC
Confidence 578999999988632 222443332221111122223333444444 3432 347788899998888889999999
Q ss_pred Ccce
Q 031359 139 FAGI 142 (161)
Q Consensus 139 ~~~v 142 (161)
++-|
T Consensus 311 adAv 314 (338)
T PLN02460 311 VKAV 314 (338)
T ss_pred CCEE
Confidence 9754
No 138
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=54.96 E-value=30 Score=24.29 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCCeEEEEeCCc--hhHHHHHHHHHHC---CCcceeEecccHHHH
Q 031359 104 VEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLNA---GFAGITDIAGGFAAW 152 (161)
Q Consensus 104 ~~~~~~~l~~~~~ivv~c~~g--~~a~~~~~~L~~~---G~~~v~~l~GG~~~W 152 (161)
-+.....++++..+|+.+..| ..|...|..|... |..++..+-||-.++
T Consensus 57 ~~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 57 GERILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 344555677777777777777 4677888877653 555788888986554
No 139
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=54.82 E-value=21 Score=29.22 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=30.6
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
...++++|++-..+..++..|...|+ ++..+.|++.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~ 277 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGF-SALALHGDLE 277 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 45688999999999999999999998 4778888874
No 140
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.80 E-value=17 Score=29.49 Aligned_cols=39 Identities=13% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHH
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 151 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 151 (161)
+.-++. |++|.+...+.+++..|++.||+ |..|.|-+..
T Consensus 328 ~tigqs-iIFc~tk~ta~~l~~~m~~~Gh~-V~~l~G~l~~ 366 (477)
T KOG0332|consen 328 LTIGQS-IIFCHTKATAMWLYEEMRAEGHQ-VSLLHGDLTV 366 (477)
T ss_pred hhhhhe-EEEEeehhhHHHHHHHHHhcCce-eEEeeccchh
Confidence 333444 55688888899999999999984 9999997753
No 141
>PRK13530 arsenate reductase; Provisional
Probab=54.56 E-value=33 Score=23.15 Aligned_cols=35 Identities=20% Similarity=0.007 Sum_probs=21.4
Q ss_pred CeEEEEeCCc-hhHHHHHHHHHHCCCcceeEecccH
Q 031359 115 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 115 ~~ivv~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+.|+|+|.+. -||..+...++.+.-+++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 4688888654 5666666666654334555566665
No 142
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=54.43 E-value=28 Score=24.85 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.|+++.+ +|.....++..|++.|..+|+++
T Consensus 96 ~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~a 131 (181)
T PRK09162 96 KGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSA 131 (181)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 4678888875 68888899999999998877754
No 143
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=54.37 E-value=7.5 Score=29.56 Aligned_cols=89 Identities=25% Similarity=0.271 Sum_probs=49.6
Q ss_pred cCHHHHHHHHh----CC-CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchh
Q 031359 52 VPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 126 (161)
Q Consensus 52 i~~~~~~~~~~----~~-~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~ 126 (161)
++.+++.++.+ -| -.+|.|.+.+|.+..---|+.-|-..+-.-..+..+.+...++...++++ +++++.+|..
T Consensus 142 L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~--~~~iseSGI~ 219 (254)
T PF00218_consen 142 LSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKD--VIVISESGIK 219 (254)
T ss_dssp SGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTT--SEEEEESS-S
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccc--eeEEeecCCC
Confidence 34455455543 24 46899999888764222222222111111112222334455666667755 5666789999
Q ss_pred HHHHHHHHHHCCCcce
Q 031359 127 SMMAATDLLNAGFAGI 142 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v 142 (161)
+..-+..|...|++.+
T Consensus 220 ~~~d~~~l~~~G~dav 235 (254)
T PF00218_consen 220 TPEDARRLARAGADAV 235 (254)
T ss_dssp SHHHHHHHCTTT-SEE
T ss_pred CHHHHHHHHHCCCCEE
Confidence 8899999999999754
No 144
>PRK06917 hypothetical protein; Provisional
Probab=53.95 E-value=34 Score=28.15 Aligned_cols=50 Identities=12% Similarity=-0.006 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHH-----CCC---cceeEecccHHHHh
Q 031359 104 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWR 153 (161)
Q Consensus 104 ~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~-----~G~---~~v~~l~GG~~~W~ 153 (161)
.+.+.+.++.....+++|++|..|..+|..|.. .|+ ..|..+.|||.+|.
T Consensus 80 ae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t 137 (447)
T PRK06917 80 AKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGIT 137 (447)
T ss_pred HHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCcc
Confidence 333444344443468889999888877776653 243 34656778887764
No 145
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=53.71 E-value=39 Score=27.73 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
...+.+..+ +++.++++ +.|..+..++..|...|+.++.+.+--+
T Consensus 168 lA~~~~~~L-~~~~vlvI-GAGem~~lva~~L~~~g~~~i~IaNRT~ 212 (414)
T COG0373 168 LAKRIFGSL-KDKKVLVI-GAGEMGELVAKHLAEKGVKKITIANRTL 212 (414)
T ss_pred HHHHHhccc-ccCeEEEE-cccHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence 333344333 35667776 7788888999999999999998876544
No 146
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=53.32 E-value=26 Score=23.37 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=28.1
Q ss_pred CeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHH
Q 031359 115 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W 152 (161)
.+|+ +++.|.-...++..|...|+.++.++|+..-..
T Consensus 3 ~~v~-iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 3 KRVL-IIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp -EEE-EESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred CEEE-EECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence 3444 458888888999999999999999888875443
No 147
>PRK06148 hypothetical protein; Provisional
Probab=53.10 E-value=27 Score=32.00 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=32.9
Q ss_pred HhcCCCCCeEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 108 STRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 108 ~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.+.++.+-..+++|++|..|..+|..|.+. |-++|-.+.|||.+|.
T Consensus 673 ~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t 720 (1013)
T PRK06148 673 TATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTT 720 (1013)
T ss_pred HHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCC
Confidence 333444345788999999988888777653 6566777888888875
No 148
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=53.04 E-value=61 Score=21.02 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCc--hhHHHHHHHHHHCCCcceeEecc
Q 031359 102 KFVEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 102 ~~~~~~~~~l~~~~~ivv~c~~g--~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+.+.+....++.++.|++.|+-+ .-...++..+ ..+++++++.|
T Consensus 45 ~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~--~~~~~~~vi~G 90 (116)
T PF03610_consen 45 EKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLL--LDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHH--CTSTTEEEEES
T ss_pred HHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHh--ccCCCEEEEec
Confidence 34455555667788899998843 3333333333 33445655554
No 149
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=52.46 E-value=21 Score=22.03 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=15.6
Q ss_pred eEEEEeCCchhHHH-HH----HHHHHCCCc
Q 031359 116 EIIVGCQSGKRSMM-AA----TDLLNAGFA 140 (161)
Q Consensus 116 ~ivv~c~~g~~a~~-~~----~~L~~~G~~ 140 (161)
.|+++|++|.-+.. ++ ..+.+.|..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~ 31 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLE 31 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 58999999854433 23 345556653
No 150
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=52.35 E-value=25 Score=30.00 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=31.3
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
....++|||++-..+..++..|...|+ ++..+.|++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~ 292 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVP 292 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCC
Confidence 356789999999999999999999998 4888888753
No 151
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=52.09 E-value=24 Score=23.80 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=22.0
Q ss_pred eEEEEeCCc-hhHHHHHHHHHHCCCc-ceeEecccHHH
Q 031359 116 EIIVGCQSG-KRSMMAATDLLNAGFA-GITDIAGGFAA 151 (161)
Q Consensus 116 ~ivv~c~~g-~~a~~~~~~L~~~G~~-~v~~l~GG~~~ 151 (161)
.|+|+|.+. -||..+...|+++.-+ ++.+...|...
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~ 39 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSG 39 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCC
Confidence 577888654 5666666666665432 56566666644
No 152
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=51.99 E-value=23 Score=22.99 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=18.6
Q ss_pred CeEEEEeCCchhHHHHHHH----HHHCCCc
Q 031359 115 DEIIVGCQSGKRSMMAATD----LLNAGFA 140 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~~~~~----L~~~G~~ 140 (161)
+.|++.|+.|..+...+.. .++.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 5799999999877776643 3456664
No 153
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=51.88 E-value=42 Score=21.21 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCccee
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGIT 143 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~ 143 (161)
+-+|++-|..|..+..+...|+++|.+.+.
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~~~~ 50 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCDVIE 50 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCcEEE
Confidence 347999999999999999999999985433
No 154
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=51.80 E-value=36 Score=29.67 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
.+.++.....++..++|+|.+-.++...+..|...|+. +..+.|++.
T Consensus 431 Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~-~~~lh~~~~ 477 (655)
T TIGR00631 431 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK-VRYLHSEID 477 (655)
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc-eeeeeCCCC
Confidence 34444444456788999999999999999999999984 666777653
No 155
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=51.62 E-value=19 Score=21.20 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=13.6
Q ss_pred eEEEEeCCc-hhHHHHHHHHHH
Q 031359 116 EIIVGCQSG-KRSMMAATDLLN 136 (161)
Q Consensus 116 ~ivv~c~~g-~~a~~~~~~L~~ 136 (161)
.|+++|++| ..+..+...|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 378999998 455555555543
No 156
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=51.43 E-value=47 Score=19.30 Aligned_cols=40 Identities=5% Similarity=-0.069 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcce
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGI 142 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v 142 (161)
.+...+..++.++.+.|..+.......+..++...||+-+
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~ 55 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVV 55 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEE
Confidence 4556677788888888888877766789999999999633
No 157
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=51.23 E-value=32 Score=26.81 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=26.4
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
+++.+|++++ +|.....++..|++.|-.+|+.
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 244 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDC 244 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEE
Confidence 4678888875 6888889999999999987774
No 158
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.21 E-value=52 Score=27.13 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHhcCCCCCeEEEEeCCc----------hhHHHHHHHHHHCCCcceeEecccHHHHhh
Q 031359 97 MTKNLKFVEEVSTRFRKHDEIIVGCQSG----------KRSMMAATDLLNAGFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~ivv~c~~g----------~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 154 (161)
...-.+|+++.+..-.-.+.|||+..+. ..+..+|.++++.|. +|-.+-.++.-|..
T Consensus 201 GREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~-~VLL~mDSlTRfA~ 267 (441)
T COG1157 201 GREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGK-RVLLIMDSLTRFAM 267 (441)
T ss_pred chhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCC-eEEEEeecHHHHHH
Confidence 3444567777666554567777777664 234567789999996 68888888888864
No 159
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=50.31 E-value=16 Score=27.61 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHHHHhcC-CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 102 KFVEEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 102 ~~~~~~~~~l-~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+.+......| .++..+++|+.+=.+..+....|++.||.++..+.
T Consensus 126 ~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 126 EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEE
Confidence 4566666777 56788999999989999999999999998776554
No 160
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=50.12 E-value=17 Score=30.78 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHHCCCccee
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGIT 143 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~ 143 (161)
...+||.|+|.||.-++...=...+.++.+|.
T Consensus 68 as~rPVavi~TSGTA~ANl~PAViEA~~srvp 99 (566)
T COG1165 68 ASKRPVAVICTSGTAVANLYPAVIEANLSRVP 99 (566)
T ss_pred hcCCCEEEEEcCcchhhhccHHHHhhhhcCCc
Confidence 35789999999998777666666666665544
No 161
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=50.06 E-value=43 Score=29.65 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
.++++|+|.|.+-..+..++..|.+.|+. ..+|++.-
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi~-~~~Lna~q 439 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGIP-HNVLNAKN 439 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEEeeCCh
Confidence 57899999999999999999999999996 45677763
No 162
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=49.92 E-value=48 Score=29.64 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=33.4
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHH
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 151 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 151 (161)
.+.++|+|.|.+-..|..++..|.+.|+. ..+|++...+
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~-~~~Lna~~~~ 476 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIP-HAVLNAKNHA 476 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCC-eeEecCCcHH
Confidence 47899999999999999999999999986 5578877553
No 163
>PRK11595 DNA utilization protein GntX; Provisional
Probab=49.67 E-value=37 Score=25.13 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=27.5
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
.++.|+++++ +|.....++..|++.|...|+++
T Consensus 186 ~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~ 221 (227)
T PRK11595 186 QGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVW 221 (227)
T ss_pred CCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEE
Confidence 4667888876 68888899999999999888764
No 164
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=49.47 E-value=36 Score=27.63 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
....++|||++-..+..++..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 3567899999999999999999999984 778888863
No 165
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=48.83 E-value=34 Score=25.43 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=26.4
Q ss_pred CeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 115 DEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 115 ~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+.|+++++ +|.....++..|++.|..+|.++
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~ 218 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVL 218 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEE
Confidence 56888876 68999999999999999888765
No 166
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=48.78 E-value=76 Score=20.89 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCc---hhHHHHHHHHHHCCCcceeEe
Q 031359 102 KFVEEVSTRFRKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 102 ~~~~~~~~~l~~~~~ivv~c~~g---~~a~~~~~~L~~~G~~~v~~l 145 (161)
+.+........++..|++-++.. .+-..+...+++.|+.++.+.
T Consensus 72 ~~L~~~l~~~~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 72 EELEAEIAQLNKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred HHHHHHHHhhCCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 34444444455677788887765 344567778999999988754
No 167
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=47.97 E-value=29 Score=23.80 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=21.8
Q ss_pred CeEEEEeCCc-hhHHHHHHHHHHCCCcceeEecccHHHH
Q 031359 115 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 115 ~~ivv~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W 152 (161)
+.|+|+|.+. -||..|...|+...- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 3578888653 577666667766542 344555555443
No 168
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=47.75 E-value=32 Score=28.28 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=30.1
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
...++|||++-..+..++..|...|+. +..+.|++.
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~ 280 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIR-SAAIHGNKS 280 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence 357899999988888999999999984 777888763
No 169
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=47.65 E-value=29 Score=24.47 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=24.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+++.|+|+ ++|..|..++..|.+.| ++|.++.
T Consensus 166 ~~k~V~VV-G~G~SA~d~a~~l~~~g-~~V~~~~ 197 (203)
T PF13738_consen 166 KGKRVVVV-GGGNSAVDIAYALAKAG-KSVTLVT 197 (203)
T ss_dssp TTSEEEEE---SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred CCCcEEEE-cChHHHHHHHHHHHhhC-CEEEEEe
Confidence 35777777 77889999999999999 6787653
No 170
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=47.60 E-value=40 Score=25.86 Aligned_cols=34 Identities=26% Similarity=0.130 Sum_probs=26.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+++.++++ ++|..+..++..|.+.|..++++++-
T Consensus 124 ~~k~vlvl-GaGGaarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 124 AGFRGLVI-GAGGTSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred CCceEEEE-cCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 35567666 66777778888899999988887753
No 171
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=47.03 E-value=46 Score=27.49 Aligned_cols=47 Identities=9% Similarity=0.050 Sum_probs=30.0
Q ss_pred HHhcCCCCCeEEEEeCCchhHHHHHHHHHHC-----CC---cceeEecccHHHHh
Q 031359 107 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNA-----GF---AGITDIAGGFAAWR 153 (161)
Q Consensus 107 ~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~-----G~---~~v~~l~GG~~~W~ 153 (161)
+.+.++..-.-+++|++|..+..+|..|.+. |+ ++|-.+.|+|.+|.
T Consensus 108 L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t 162 (460)
T PRK06916 108 LIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDT 162 (460)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCccc
Confidence 3333443334688999998887777766543 43 34666788887764
No 172
>PRK10126 tyrosine phosphatase; Provisional
Probab=46.91 E-value=30 Score=23.69 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=22.1
Q ss_pred CeEEEEeCCc-hhHHHHHHHHHHCCCcceeEecccHHHH
Q 031359 115 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 115 ~~ivv~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~~W 152 (161)
..|+|+|... -||..|...|+..+- .+.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 4678888654 577777777776652 344445555433
No 173
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=46.77 E-value=38 Score=28.43 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=28.6
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+++.|+++++ +|.+...++..|++.|-+.|+++.
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v 393 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFAS 393 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEE
Confidence 4678999987 488899999999999998887653
No 174
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=46.64 E-value=62 Score=23.03 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=33.6
Q ss_pred CCCCCeEEEEeC---CchhHHHHHHHHHHCCCccee---Eec---ccHHHHhhCCCCCC
Q 031359 111 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPTE 160 (161)
Q Consensus 111 l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~p~~ 160 (161)
+.++++|+++.+ +|.....+...|++.|.+-+. +++ ||-..-.+.|+|+.
T Consensus 104 ~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~ 162 (176)
T PRK13812 104 LDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELE 162 (176)
T ss_pred CCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEE
Confidence 557889999886 688888999999999975222 222 33233345677764
No 175
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=46.31 E-value=41 Score=24.35 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=24.9
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.+|++++ +|..-..++..|++.|-.+|+.+
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~ 117 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYAC 117 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEE
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEE
Confidence 4566777664 67777788999999998888753
No 176
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=46.29 E-value=45 Score=26.29 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=26.5
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
+++.+|++++ +|..-..++..|++.|-..|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVA 250 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEE
Confidence 4677888875 6888889999999999988774
No 177
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=46.26 E-value=59 Score=26.37 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=27.4
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHC--------CCcceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNA--------GFAGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~--------G~~~v~~l~GG~~~W~ 153 (161)
.+.+-.-+++|++|..|..+|..|.+. |-.+|-.+.||+.+|.
T Consensus 98 ~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t 148 (423)
T PRK05964 98 TPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDT 148 (423)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 433333577789998877777665432 3345666788887664
No 178
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=46.12 E-value=45 Score=27.56 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=27.0
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.-|++|++|..|..+|..|.+. |-..|-.+.|||.+|.
T Consensus 114 ~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 153 (457)
T PRK05639 114 PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQT 153 (457)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 4578899998888877777653 4445656778887764
No 179
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=46.10 E-value=29 Score=21.10 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=14.7
Q ss_pred EEEEeCCch-hHHHHHH----HHHHCCCc
Q 031359 117 IIVGCQSGK-RSMMAAT----DLLNAGFA 140 (161)
Q Consensus 117 ivv~c~~g~-~a~~~~~----~L~~~G~~ 140 (161)
++++|++|. .|..+.. .+.+.|+.
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~i~ 30 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELGIE 30 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 789999985 3443443 44456653
No 180
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=46.07 E-value=34 Score=22.94 Aligned_cols=11 Identities=18% Similarity=0.287 Sum_probs=5.8
Q ss_pred HHHHHHHHCCC
Q 031359 129 MAATDLLNAGF 139 (161)
Q Consensus 129 ~~~~~L~~~G~ 139 (161)
.+...|++.|+
T Consensus 42 ~a~~~l~e~Gi 52 (129)
T TIGR02691 42 NAVKAMKEVGI 52 (129)
T ss_pred HHHHHHHHcCC
Confidence 44455555555
No 181
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=45.62 E-value=59 Score=22.72 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
++.+....+.++..++++..+......+...|++.||....+-..|
T Consensus 122 ~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 122 FLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence 4444455566776666654444447788889999999754444444
No 182
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=45.60 E-value=48 Score=24.58 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=25.7
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCc--ceeEecc
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFA--GITDIAG 147 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~--~v~~l~G 147 (161)
++++++|+ +.|.-+.-++..|...|.. ++++++-
T Consensus 24 ~~~rvlvl-GAGgAg~aiA~~L~~~G~~~~~i~ivdr 59 (226)
T cd05311 24 EEVKIVIN-GAGAAGIAIARLLLAAGAKPENIVVVDS 59 (226)
T ss_pred cCCEEEEE-CchHHHHHHHHHHHHcCcCcceEEEEeC
Confidence 35666666 6677777888999999998 8887653
No 183
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=45.53 E-value=68 Score=25.05 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=26.5
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.++++.+ +|..-..++..|++.|-.+|+.+
T Consensus 200 ~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~ 235 (304)
T PRK03092 200 EGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIA 235 (304)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEE
Confidence 4567888875 67888899999999999887754
No 184
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=45.51 E-value=57 Score=23.00 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=34.3
Q ss_pred CCCCCeEEEEeC---CchhHHHHHHHHHHCCCccee---Eec----ccHHHHhhC-CCCCC
Q 031359 111 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA----GGFAAWRQN-GLPTE 160 (161)
Q Consensus 111 l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~----GG~~~W~~~-g~p~~ 160 (161)
+.++++|+++.+ +|.....+...|++.|.+-+. +++ ||...+... |.|+.
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~~ 165 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVI 165 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeEE
Confidence 456788999886 577788899999999975322 232 455566554 77764
No 185
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=45.10 E-value=31 Score=31.43 Aligned_cols=47 Identities=19% Similarity=0.104 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
.+........+++..|+||.+-.....++..|+..|.. ...|..|+.
T Consensus 474 ~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~-a~~YHAGl~ 520 (941)
T KOG0351|consen 474 DILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKS-AAFYHAGLP 520 (941)
T ss_pred HHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchh-hHhhhcCCC
Confidence 33344445567889999999988888999999999964 566888873
No 186
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=45.10 E-value=42 Score=28.00 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=29.1
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEecc
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+++.|+++++ +|.++..+++.|++.|.+.|+++-.
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIA 384 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEEC
Confidence 4688999987 4888999999999999988876543
No 187
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.61 E-value=38 Score=27.10 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=26.2
Q ss_pred HHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 105 EEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 105 ~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
..++..+.-++. |++|++-+|....|....++||.
T Consensus 314 ntLfskLqINQs-IIFCNS~~rVELLAkKITelGys 348 (459)
T KOG0326|consen 314 NTLFSKLQINQS-IIFCNSTNRVELLAKKITELGYS 348 (459)
T ss_pred HHHHHHhcccce-EEEeccchHhHHHHHHHHhccch
Confidence 334444444554 56799999999999999999985
No 188
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=44.58 E-value=60 Score=29.01 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=32.5
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
.+.++++|+|.+-..+...+..|.+.|+. +..|.|...
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~-~~~L~~~~~ 463 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIP-HNLLNAKNA 463 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEecCCcc
Confidence 46789999999999999999999999995 667888754
No 189
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=44.49 E-value=1.2e+02 Score=23.06 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=43.2
Q ss_pred CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcce
Q 031359 65 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGI 142 (161)
Q Consensus 65 ~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v 142 (161)
-.||.|++..|.+..---|+.-|-..+-.-..+..+......+...++++ +++++.+|..+..-+..++.. ++-+
T Consensus 153 e~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~--~~~IsESGI~t~~d~~~l~~~-~dav 227 (247)
T PRK13957 153 DVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPN--IVKVGESGIESRSDLDKFRKL-VDAA 227 (247)
T ss_pred ceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCC--cEEEEcCCCCCHHHHHHHHHh-CCEE
Confidence 46889999888874333344333322111122233445556666667644 566778997776666667665 6543
No 190
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=44.33 E-value=74 Score=22.93 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=34.7
Q ss_pred cCCCCCeEEEEeC---CchhHHHHHHHHHHCCCccee---Eec---ccHHHHhhCCCCCC
Q 031359 110 RFRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPTE 160 (161)
Q Consensus 110 ~l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~p~~ 160 (161)
.+.++++|+++.+ +|.....+...+++.|.+-+. +++ ||-....+.|+|+.
T Consensus 118 ~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~~ 177 (187)
T PRK13810 118 DLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEGAEENLKEADVELV 177 (187)
T ss_pred cCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCCcEE
Confidence 3567889999986 688888889999999975222 233 44444455677764
No 191
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=44.25 E-value=46 Score=30.16 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=33.6
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHH
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W 152 (161)
.++++|+|.|.+-..|...+..|...|+. ..+|++.....
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~gi~-~~vLnak~~~~ 486 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEKIP-HEVLNAKFHER 486 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCCCC-eEeccCcccHH
Confidence 57899999999999999999999999995 55687765443
No 192
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.16 E-value=45 Score=26.29 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=26.1
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
+++.+|++++ +|..-..++..|++.|-..|+.
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 251 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIYA 251 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEE
Confidence 4677888765 6888889999999999988774
No 193
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=43.98 E-value=54 Score=26.91 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=27.0
Q ss_pred EEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 117 IIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 117 ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
-|++|++|..|..+|..|.+. |-..|-.+.|||.+|.
T Consensus 117 ~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 155 (451)
T PRK06918 117 KVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRT 155 (451)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccc
Confidence 588999998888877766543 5455666788887764
No 194
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=43.67 E-value=37 Score=23.20 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=23.1
Q ss_pred CeEEEEeCCc-hhHHHHHHHHHHCCCcceeEecccHH
Q 031359 115 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 115 ~~ivv~c~~g-~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
..|+|+|.+. -||..|-..++...-+++.+...|..
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~ 39 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTG 39 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccC
Confidence 4678888753 57766666666654356777766653
No 195
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=43.39 E-value=50 Score=21.03 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=9.1
Q ss_pred eEEEEeCCchhHHHHHHHHHHCCC
Q 031359 116 EIIVGCQSGKRSMMAATDLLNAGF 139 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~G~ 139 (161)
++++++..... ...++..|+
T Consensus 23 ~vvvid~d~~~----~~~~~~~~~ 42 (116)
T PF02254_consen 23 DVVVIDRDPER----VEELREEGV 42 (116)
T ss_dssp EEEEEESSHHH----HHHHHHTTS
T ss_pred EEEEEECCcHH----HHHHHhccc
Confidence 45555444222 344445554
No 196
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=43.30 E-value=50 Score=27.11 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=31.5
Q ss_pred HHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 105 EEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 105 ~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
+.+.+.++....-|++|++|..|..+|..|.+. |-..|-.+.|||.+|.
T Consensus 100 ~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 100 EELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred HHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 333333443323578889998888877776553 5455666788888775
No 197
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=43.26 E-value=69 Score=18.81 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
.....+..+..++.+.|.++.......+-.+++..||+
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~ 52 (69)
T cd03422 15 ATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYK 52 (69)
T ss_pred HHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCE
Confidence 34556677888888888888777777888899999996
No 198
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=43.21 E-value=43 Score=19.88 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=20.9
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHH
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLN 136 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~ 136 (161)
..+..|+++|.+...+......|++
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4678999999999888888887765
No 199
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=43.04 E-value=57 Score=25.70 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=25.0
Q ss_pred CCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 114 HDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 114 ~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
++.+|++++ +|..-..++..|++.|-++|+.
T Consensus 214 gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a 247 (314)
T COG0462 214 GKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYA 247 (314)
T ss_pred CCEEEEEeccccccHHHHHHHHHHHHCCCCeEEE
Confidence 467777775 5778889999999999988874
No 200
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=43.03 E-value=58 Score=19.97 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=15.2
Q ss_pred eEEEEeCCc--hhHHHHHHHHHHCCCcc
Q 031359 116 EIIVGCQSG--KRSMMAATDLLNAGFAG 141 (161)
Q Consensus 116 ~ivv~c~~g--~~a~~~~~~L~~~G~~~ 141 (161)
+|-|+=.++ ..+..++..|+..||..
T Consensus 5 ~V~VlNgt~~~GlA~~~a~~L~~~Gf~v 32 (90)
T PF13399_consen 5 RVEVLNGTGVSGLAARVADALRNRGFTV 32 (90)
T ss_pred EEEEEECcCCcCHHHHHHHHHHHCCCce
Confidence 444443343 45666777777777753
No 201
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=42.95 E-value=54 Score=29.98 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=30.1
Q ss_pred CCeEEEEeCCchhHHHHHHHH-HHCCCcceeEecccHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDL-LNAGFAGITDIAGGFA 150 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L-~~~G~~~v~~l~GG~~ 150 (161)
+.++||+|.+...+...+..| ...|++ +..++||+.
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~-~~~ihG~~s 529 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIR-AAVFHEGMS 529 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCee-EEEEECCCC
Confidence 568999999999999999999 467985 667899874
No 202
>PRK07481 hypothetical protein; Provisional
Probab=42.89 E-value=51 Score=27.13 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=27.5
Q ss_pred CeEEEEeCCchhHHHHHHHHHHC--------CCcceeEecccHHHHhh
Q 031359 115 DEIIVGCQSGKRSMMAATDLLNA--------GFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~~~~~L~~~--------G~~~v~~l~GG~~~W~~ 154 (161)
-.-|++|++|..|..+|..|.+. |-..|-.+.|||.+|..
T Consensus 104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 151 (449)
T PRK07481 104 MRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHF 151 (449)
T ss_pred CCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcch
Confidence 34678899998877777766442 33346678888888753
No 203
>PRK05922 type III secretion system ATPase; Validated
Probab=42.71 E-value=1e+02 Score=25.45 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCc----------hhHHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 102 KFVEEVSTRFRKHDEIIVGCQSG----------KRSMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 102 ~~~~~~~~~l~~~~~ivv~c~~g----------~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
+++.+.......++.++|+..+. ..+..+|.+++..|. +|-++-..+..|..+
T Consensus 200 eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~-~VLl~~DslTR~A~A 262 (434)
T PRK05922 200 EYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGH-RVLFIMDSLSRWIAA 262 (434)
T ss_pred HHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEeccchhHHHHH
Confidence 45555554455566777776654 234457788999996 688877888888654
No 204
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=42.67 E-value=53 Score=27.34 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=28.6
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.-|.+|++|..+..+|..|.+. |-++|..+.|+|.+|.
T Consensus 156 ~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 156 EMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred CEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 4578899999988888777653 6556666788888875
No 205
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=42.54 E-value=57 Score=25.09 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=25.3
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
.++++++ +.|..+..++..|...|..++++++-
T Consensus 127 ~k~vlIl-GaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 127 LERVVQL-GAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred CCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 4556655 67777788899999999988888764
No 206
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=42.40 E-value=55 Score=21.45 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=19.9
Q ss_pred CCCeEEEEeCCc--hhHHHHHHHHHHCCCc
Q 031359 113 KHDEIIVGCQSG--KRSMMAATDLLNAGFA 140 (161)
Q Consensus 113 ~~~~ivv~c~~g--~~a~~~~~~L~~~G~~ 140 (161)
.+..++++|.+. ..+..++..|++.|++
T Consensus 8 ~g~di~iia~G~~~~~al~A~~~L~~~Gi~ 37 (124)
T PF02780_consen 8 EGADITIIAYGSMVEEALEAAEELEEEGIK 37 (124)
T ss_dssp SSSSEEEEEETTHHHHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeehHHHHHHHHHHHHHHHcCCc
Confidence 455565655543 5777899999999984
No 207
>PRK05965 hypothetical protein; Provisional
Probab=42.34 E-value=67 Score=26.54 Aligned_cols=48 Identities=10% Similarity=0.132 Sum_probs=29.5
Q ss_pred HHHhcCCCCCeEEEEeCCchhHHHHHHHHHH-C----C---CcceeEecccHHHHh
Q 031359 106 EVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-A----G---FAGITDIAGGFAAWR 153 (161)
Q Consensus 106 ~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~-~----G---~~~v~~l~GG~~~W~ 153 (161)
.+.+..+.+-.-|++|++|..|..+|..|.+ . | -.+|-.+.+||.+|.
T Consensus 98 ~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 98 KLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred HHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCccc
Confidence 3333344344467889999887776666543 2 4 234556788887774
No 208
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.21 E-value=63 Score=27.35 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
++.++||+|.+-..+..++..|+..|| ++..++|...
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~~-~a~~iHGd~s 376 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKGW-PAVAIHGDKS 376 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcCc-ceeeeccccc
Confidence 455799999999999999999999998 4767888763
No 209
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=42.10 E-value=63 Score=26.44 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=27.4
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHC-------CCcceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNA-------GFAGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~-------G~~~v~~l~GG~~~W~ 153 (161)
.+.+-.-|++|++|..|..+|..|.+. |-.++-.+.|||.++.
T Consensus 99 ~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t 148 (428)
T PRK07986 99 TPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDT 148 (428)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCc
Confidence 443334688899998877776665442 3344656778776653
No 210
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=42.02 E-value=65 Score=23.33 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=26.8
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
+.+|+++ +.|.-...++..|...|+.++.+++..
T Consensus 21 ~~~Vlvi-G~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLII-GAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEE-CCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4455554 677777799999999999989888875
No 211
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=41.82 E-value=57 Score=26.81 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=27.4
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHC--------CCcceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNA--------GFAGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~--------G~~~v~~l~GG~~~W~ 153 (161)
++.+-.-|++|++|..|..+|..|.+. |-.+|-.+.|||.+|.
T Consensus 102 ~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 152 (442)
T PRK13360 102 APGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVG 152 (442)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 343334678899998877776665442 2335666788887764
No 212
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=41.67 E-value=42 Score=20.05 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=15.8
Q ss_pred eEEEEeCCchh-HHHHHHHHHHC
Q 031359 116 EIIVGCQSGKR-SMMAATDLLNA 137 (161)
Q Consensus 116 ~ivv~c~~g~~-a~~~~~~L~~~ 137 (161)
.++++|++|.. +..++..|++.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~ 24 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKL 24 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHH
Confidence 58999999854 44666677664
No 213
>PRK07482 hypothetical protein; Provisional
Probab=41.53 E-value=66 Score=26.61 Aligned_cols=47 Identities=15% Similarity=0.025 Sum_probs=29.1
Q ss_pred HHhcCCCCCeEEEEeCCchhHHHHHHHHHH-----CCC---cceeEecccHHHHh
Q 031359 107 VSTRFRKHDEIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWR 153 (161)
Q Consensus 107 ~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~-----~G~---~~v~~l~GG~~~W~ 153 (161)
+.+..+.+-.-+++|++|..|..+|..+.+ .|. .+|-.+.|||.+|.
T Consensus 103 L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t 157 (461)
T PRK07482 103 IIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSG 157 (461)
T ss_pred HHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCcc
Confidence 333344333457889999888777666653 243 34556778887764
No 214
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=41.50 E-value=1.3e+02 Score=22.95 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=46.6
Q ss_pred CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcc
Q 031359 65 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG 141 (161)
Q Consensus 65 ~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~ 141 (161)
-+|+.|.+.+|.+.-.--|+.=|-..+-.-..+..+.+....+...++++ ++++..||..+..-...+...|.+-
T Consensus 158 ~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~--~~~IsESGI~~~~dv~~l~~~ga~a 232 (254)
T COG0134 158 EVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKD--VILISESGISTPEDVRRLAKAGADA 232 (254)
T ss_pred eeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCC--cEEEecCCCCCHHHHHHHHHcCCCE
Confidence 57899999888875444454433222111122223334455555666655 4666789988888888999999853
No 215
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=41.41 E-value=40 Score=20.87 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=24.1
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
.+.||++. + ......+...|+..+.++++++ ||-.
T Consensus 49 ~~~PIll~-~-~~l~~~~~~~l~~~~~~~v~ii-Gg~~ 83 (92)
T PF04122_consen 49 NNAPILLV-N-NSLPSSVKAFLKSLNIKKVYII-GGEG 83 (92)
T ss_pred cCCeEEEE-C-CCCCHHHHHHHHHcCCCEEEEE-CCCC
Confidence 35666665 4 4444678888888888888877 6643
No 216
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.39 E-value=54 Score=25.78 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=26.3
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
+++.++++++ +|..-..++..|++.|-+.|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVYA 250 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEE
Confidence 4678888875 6888889999999999888774
No 217
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=41.25 E-value=58 Score=26.77 Aligned_cols=47 Identities=11% Similarity=-0.055 Sum_probs=29.9
Q ss_pred HHhcCCCCCeEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 107 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 107 ~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
+...++....-|++|++|..|..+|..|.+. |-+.|..+.||+.+|.
T Consensus 93 L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 93 LIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGST 141 (443)
T ss_pred HHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcC
Confidence 3333443323578899998888877776543 5555666777776653
No 218
>PRK07678 aminotransferase; Validated
Probab=41.20 E-value=50 Score=27.18 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=25.5
Q ss_pred eEEEEeCCchhHHHHHHHHHHC-----C---CcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~W~ 153 (161)
.-|++|++|..|..+|..|.+. | -..|-.+.|||.+|.
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t 151 (451)
T PRK07678 106 YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNS 151 (451)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcc
Confidence 3578899998877766665432 3 334656778887764
No 219
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.03 E-value=52 Score=27.69 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=24.8
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
...|||+ +.|.....+|+.|...|++ |-+|+
T Consensus 15 ~~~VIVI-GAGiaGLsAArqL~~~G~~-V~VLE 45 (501)
T KOG0029|consen 15 KKKVIVI-GAGLAGLSAARQLQDFGFD-VLVLE 45 (501)
T ss_pred CCcEEEE-CCcHHHHHHHHHHHHcCCc-eEEEe
Confidence 3456666 7788888999999999996 77775
No 220
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=41.02 E-value=82 Score=28.09 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=32.7
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHH
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 151 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 151 (161)
.+.++++|.|.+-..+...+..|.+.|+. +.+|.|....
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~gi~-~~~L~a~~~~ 460 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREGIP-HNLLNAQNAA 460 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCCCC-EEEecCCChH
Confidence 46789999999988899999999999996 5568877654
No 221
>PRK06062 hypothetical protein; Provisional
Probab=41.02 E-value=57 Score=26.87 Aligned_cols=43 Identities=7% Similarity=-0.032 Sum_probs=28.9
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.+.+-.-|++|++|..|..+|..|.+. |-.+|-.+.|||.+|.
T Consensus 108 ~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 108 APGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred CCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCC
Confidence 343334578899998888877776543 5455666778877763
No 222
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=40.58 E-value=1.2e+02 Score=21.36 Aligned_cols=48 Identities=21% Similarity=0.119 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCCCeEEEEeCCc--hhHHHHHHHHH---HCCCcceeEecccHHH
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLL---NAGFAGITDIAGGFAA 151 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g--~~a~~~~~~L~---~~G~~~v~~l~GG~~~ 151 (161)
.-+.....++++..+|+..-.| ..|...|..|. ..| .++..+-||-.+
T Consensus 56 E~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~G 108 (155)
T COG1576 56 EGEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADG 108 (155)
T ss_pred HHHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCccc
Confidence 3344555677777777666555 46777777665 457 678888888654
No 223
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=40.10 E-value=65 Score=24.83 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=24.5
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+++++++ +.|..+..++..|.+.|..++++++-
T Consensus 127 ~k~vlil-GaGGaarAi~~aL~~~g~~~i~i~nR 159 (283)
T PRK14027 127 LDSVVQV-GAGGVGNAVAYALVTHGVQKLQVADL 159 (283)
T ss_pred CCeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 4556655 66777777888888999988887753
No 224
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=40.06 E-value=43 Score=20.47 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=15.3
Q ss_pred eEEEEeCCchhHH-HHHH----HHHHCCC
Q 031359 116 EIIVGCQSGKRSM-MAAT----DLLNAGF 139 (161)
Q Consensus 116 ~ivv~c~~g~~a~-~~~~----~L~~~G~ 139 (161)
.|+++|++|..+. .+.. .+.+.++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 5899999986433 3443 4455665
No 225
>PTZ00424 helicase 45; Provisional
Probab=39.97 E-value=55 Score=26.02 Aligned_cols=36 Identities=11% Similarity=0.316 Sum_probs=29.7
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
...+++||++-..+..++..|...|+ .+..+.|++.
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~-~~~~~h~~~~ 302 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDF-TVSCMHGDMD 302 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence 35678899998888899999999988 4778888864
No 226
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.89 E-value=55 Score=26.98 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=30.4
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 151 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 151 (161)
...++++|++-..+..++..|...|+. +..+.|++..
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~~~~-~~~~~g~~~~ 371 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKDGIN-AAQLSGDVPQ 371 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCC-EEEEECCCCH
Confidence 357899999988888999999999985 7778887643
No 227
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=39.74 E-value=1.1e+02 Score=21.99 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=33.4
Q ss_pred CCCCCeEEEEeC---CchhHHHHHHHHHHCCCccee---Eec----ccHHHH-hhCCCCC
Q 031359 111 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA----GGFAAW-RQNGLPT 159 (161)
Q Consensus 111 l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~----GG~~~W-~~~g~p~ 159 (161)
+.+++.|+++.+ +|.....+...+++.|-.-+. +++ ||.... ...|.|+
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~~gv~v 170 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQTGINV 170 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhccCCcE
Confidence 456888999986 577787888899999965322 222 556665 3357775
No 228
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=39.47 E-value=51 Score=27.57 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=28.3
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+++.|+++++ +|.++..++.+|++.|.+.|++.-
T Consensus 347 ~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~ 383 (475)
T PRK07631 347 EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRI 383 (475)
T ss_pred CCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4688999987 488888999999999998887643
No 229
>PRK09694 helicase Cas3; Provisional
Probab=39.40 E-value=1.1e+02 Score=27.77 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCC--cceeEecccHH
Q 031359 102 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGF--AGITDIAGGFA 150 (161)
Q Consensus 102 ~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~--~~v~~l~GG~~ 150 (161)
..++.+...+..+..++++|++-.++..++..|++.+. .++..+.+.+.
T Consensus 548 ~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 548 TLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 44555555556678899999999999999999998752 25778888753
No 230
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=39.35 E-value=68 Score=23.06 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=13.1
Q ss_pred HHHHHHHHCCCcceeEecc
Q 031359 129 MAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 129 ~~~~~L~~~G~~~v~~l~G 147 (161)
.+...|++.|.+|++.++|
T Consensus 126 ~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 126 EAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp HHHHHHHHTT-TTEEEE-H
T ss_pred HHHHHHHHcCCCcEEEeCc
Confidence 3455677789999999877
No 231
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=39.25 E-value=7.7 Score=24.23 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHHh
Q 031359 102 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 153 (161)
Q Consensus 102 ~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W~ 153 (161)
..+.+.+..-.+.+||-+|+.+.-..... ..++-.|-.+-.++-|-|..+.
T Consensus 4 ~eII~~I~~skKkTPVKvYv~G~l~~~~~-~~~~~fg~~~~~vvfGd~~~i~ 54 (83)
T PF08503_consen 4 EEIIRYIKNSKKKTPVKVYVKGDLAGIDF-EDVKVFGSGNFGVVFGDWDEIK 54 (83)
T ss_dssp HHHHHHHHHCTTB-EEEEEEEESCTC----TTSEEEEESSEEEEEEEHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeeeecCCCh-hheEEEeCCCcEEEEecHHHHH
Confidence 45556666677889999998764222222 4455566667778888887764
No 232
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=38.86 E-value=54 Score=27.14 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=27.6
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.|+++++ +|.+...++..|++.|.+.|.+.
T Consensus 333 ~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~ 368 (442)
T PRK08341 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVR 368 (442)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEE
Confidence 5688999987 48888899999999999877653
No 233
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=38.76 E-value=58 Score=26.60 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHH-CCC--c--ceeEecccHH
Q 031359 104 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-AGF--A--GITDIAGGFA 150 (161)
Q Consensus 104 ~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~-~G~--~--~v~~l~GG~~ 150 (161)
+.+.+.++.+...-||+|+||..|..+|..|.+ .++ + .+....+++.
T Consensus 89 la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFH 140 (404)
T COG4992 89 LAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFH 140 (404)
T ss_pred HHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcC
Confidence 333333333245679999999999888887754 443 2 3434555553
No 234
>PRK11018 hypothetical protein; Provisional
Probab=38.71 E-value=90 Score=18.87 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
.....+..++.++.+.|.++.......+...++..||+
T Consensus 24 ~~kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~ 61 (78)
T PRK11018 24 ATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYT 61 (78)
T ss_pred HHHHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCE
Confidence 34556677888888888888766667888899999996
No 235
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=38.58 E-value=59 Score=26.70 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=27.3
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.-|++|++|..+..+|..|.+. |-+.|..++|++.+|.
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 3578889998888877776543 5455667788887764
No 236
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=38.54 E-value=67 Score=26.31 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=27.2
Q ss_pred CeEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 115 DEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
..++++|++|..|..+|..|.+. |-.+|-.+.|++.+|.
T Consensus 102 ~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 142 (442)
T TIGR00709 102 YKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMT 142 (442)
T ss_pred ccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCch
Confidence 36778889998888777766543 5455666788777664
No 237
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=38.53 E-value=75 Score=26.35 Aligned_cols=43 Identities=7% Similarity=0.004 Sum_probs=27.8
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHH-----CCC---cceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~-----~G~---~~v~~l~GG~~~W~ 153 (161)
.+.+-.-|++|++|..|..+|..|.+ .|. ..+..+.|+|.+|.
T Consensus 103 ~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t 153 (466)
T PRK07030 103 TPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGET 153 (466)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCccc
Confidence 33333467889999887777766643 243 34666788887764
No 238
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=38.40 E-value=57 Score=28.79 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=28.6
Q ss_pred CCCeEEEEeCCc----hhHHHHHHHHHHCCCcceeEecccH
Q 031359 113 KHDEIIVGCQSG----KRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 113 ~~~~ivv~c~~g----~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
.+..||++|... .....++..|++.|.+++.++-||.
T Consensus 632 ~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 632 NDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred cCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 466799999753 3455788899999988898888874
No 239
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=38.37 E-value=58 Score=26.66 Aligned_cols=33 Identities=6% Similarity=0.035 Sum_probs=25.3
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
++.++|+ +.|..+..++..|...|+.++++..-
T Consensus 181 ~kkvlvi-GaG~~a~~va~~L~~~g~~~I~V~nR 213 (414)
T PRK13940 181 SKNVLII-GAGQTGELLFRHVTALAPKQIMLANR 213 (414)
T ss_pred CCEEEEE-cCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 4555554 77888889999999999988877653
No 240
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=38.19 E-value=80 Score=19.26 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=11.8
Q ss_pred CCCeEEEEeCCc-hhHH
Q 031359 113 KHDEIIVGCQSG-KRSM 128 (161)
Q Consensus 113 ~~~~ivv~c~~g-~~a~ 128 (161)
.+.+|+|.|..| .|+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00012 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 367999999976 3544
No 241
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=38.19 E-value=80 Score=19.26 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=11.8
Q ss_pred CCCeEEEEeCCc-hhHH
Q 031359 113 KHDEIIVGCQSG-KRSM 128 (161)
Q Consensus 113 ~~~~ivv~c~~g-~~a~ 128 (161)
.+.+|+|.|..| .|+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00404 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 367999999976 3544
No 242
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.98 E-value=50 Score=27.00 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=28.0
Q ss_pred eEEEEeCCchh----------HHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 116 EIIVGCQSGKR----------SMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 116 ~ivv~c~~g~~----------a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
++.+||+-.-. .......|+.+|++ +.+|-||+.+|..+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~-~ivLigd~ta~IgD 80 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHK-PIVLIGDATAMIGD 80 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCe-EEEEecccceecCC
Confidence 88899974311 22445577889984 88999999998754
No 243
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=37.82 E-value=1e+02 Score=22.28 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=34.7
Q ss_pred CCCCCeEEEEeC---CchhHHHHHHHHHHCCCccee---Eec----ccHHHHhhCCCCCC
Q 031359 111 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA----GGFAAWRQNGLPTE 160 (161)
Q Consensus 111 l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~----GG~~~W~~~g~p~~ 160 (161)
+.++++|+++.+ +|.....+...+++.|-+-+. +++ ||.....+.|+|+.
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv~ 173 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRVE 173 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcEE
Confidence 457889999986 688888889999999975222 232 45555556677763
No 244
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=37.63 E-value=61 Score=27.32 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=27.7
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
++++|+++++ +|.+...++..|++.|-+.|++.
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~ 411 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 411 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 5788999987 48899999999999998877654
No 245
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=37.60 E-value=77 Score=24.56 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=25.3
Q ss_pred CeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 115 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+.+++ .+.|..+..++..|.+.|..++.+++-
T Consensus 127 ~~vli-lGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 127 KRVLI-LGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred CEEEE-ECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 44444 588888888999999999988887764
No 246
>PRK06541 hypothetical protein; Provisional
Probab=37.59 E-value=72 Score=26.37 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=25.4
Q ss_pred eEEEEeCCchhHHHHHHHHHHC-----C---CcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~W~ 153 (161)
.-|++|++|..|..+|..|.+. | -.+|..+.|+|.+|.
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 158 (460)
T PRK06541 113 NRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTT 158 (460)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcc
Confidence 3578899998887777666442 2 334556778877764
No 247
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=37.53 E-value=71 Score=26.41 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=27.2
Q ss_pred eEEEEeCCchhHHHHHHHHHH--CCCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 153 (161)
.-+++|++|..+..+|..|.+ .|-.++..+.|++.+|.
T Consensus 131 ~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t 170 (459)
T PRK06082 131 NRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGAS 170 (459)
T ss_pred CEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcc
Confidence 467889999888888777755 35455666777776664
No 248
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=37.46 E-value=80 Score=28.43 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=31.6
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
.+.++|+|.|.+-..|..++..|.+.|+. ..+|++.-
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~gi~-~~vLnakq 464 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAGIP-HNVLNAKN 464 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCc-eEeccCch
Confidence 56789999999999999999999999996 55677753
No 249
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=37.45 E-value=63 Score=26.75 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=27.5
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHC-----CCcceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNA-----GFAGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~-----G~~~v~~l~GG~~~W~ 153 (161)
.+.+-.-+++|++|..|..+|..|.+. |-..|..+.|+|.+|.
T Consensus 137 ~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t 184 (459)
T PRK11522 137 TPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKS 184 (459)
T ss_pred CCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCc
Confidence 343344678899998887777766542 3224556778777764
No 250
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=37.18 E-value=1e+02 Score=21.69 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=31.9
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCccee---Eec---ccHHHHhhCCCCCC
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPTE 160 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~p~~ 160 (161)
++++++++.+ +|.....+...|++.|-+-+. +++ |+-......|.|+.
T Consensus 103 ~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~ 159 (170)
T PRK13811 103 KGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLT 159 (170)
T ss_pred CCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEE
Confidence 5788999886 688888999999999975222 233 22223334677763
No 251
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=37.10 E-value=1.2e+02 Score=20.41 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=25.2
Q ss_pred HHHHHHHHhc--CCCCCeEEEEeCCchhH--HHHHHHHHHCCCc
Q 031359 101 LKFVEEVSTR--FRKHDEIIVGCQSGKRS--MMAATDLLNAGFA 140 (161)
Q Consensus 101 ~~~~~~~~~~--l~~~~~ivv~c~~g~~a--~~~~~~L~~~G~~ 140 (161)
+.+.+.+... +.+++-+|+++.+|... ..++...++.|..
T Consensus 89 ~~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 89 EGFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMK 132 (138)
T ss_dssp GTHHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-E
T ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
Confidence 3455566555 67888899999988643 3577788889975
No 252
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=37.04 E-value=65 Score=26.84 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=27.4
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.||++++ +|.+...++..|++.|-+.|++.
T Consensus 352 ~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~ 387 (469)
T PRK05793 352 EGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFR 387 (469)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEE
Confidence 5688999987 47888889999999999887754
No 253
>PRK08297 L-lysine aminotransferase; Provisional
Probab=37.01 E-value=84 Score=25.81 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=27.4
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHH---------CCC-----cceeEecccHHHHh
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLN---------AGF-----AGITDIAGGFAAWR 153 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~---------~G~-----~~v~~l~GG~~~W~ 153 (161)
.+-.-|++|++|..|..+|..|.+ .|. .+|-.+.|||.+|.
T Consensus 108 ~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t 162 (443)
T PRK08297 108 PELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRS 162 (443)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcc
Confidence 344567889999887777766653 354 34656788887664
No 254
>PRK06149 hypothetical protein; Provisional
Probab=37.00 E-value=65 Score=29.45 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHH--CCCcceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 153 (161)
++.+..-+++|++|..|..+|..|.+ .|-+++-.+++++.+|.
T Consensus 637 ~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 637 APDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT 681 (972)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcC
Confidence 44334568889999888877776644 36556777888888765
No 255
>PRK07483 hypothetical protein; Provisional
Probab=36.92 E-value=87 Score=25.73 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=26.4
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHC-----C---CcceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~W~ 153 (161)
.+.+-.-+++|++|..|..+|..|.+. | -.+|-.+.++|.+|.
T Consensus 86 ~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t 136 (443)
T PRK07483 86 APAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNT 136 (443)
T ss_pred CCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcC
Confidence 333334578899998877766655431 2 234555678887764
No 256
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=36.92 E-value=73 Score=22.24 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=31.5
Q ss_pred HHHHHhcCCCCCeEEEEeCCc--hhHHHHHHHHHH---CCCcceeEecccHHHH
Q 031359 104 VEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLN---AGFAGITDIAGGFAAW 152 (161)
Q Consensus 104 ~~~~~~~l~~~~~ivv~c~~g--~~a~~~~~~L~~---~G~~~v~~l~GG~~~W 152 (161)
.+.+...++ +..+|+.+..| ..|...|..|.+ .| .++..+-||-.++
T Consensus 56 ~~~il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 56 GDRILAAIG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred HHHHHHhCC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 344555666 45677777677 467788888874 46 4688888986554
No 257
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=36.83 E-value=65 Score=26.63 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=27.3
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.|+++++ +|.+...++..|++.|-+.|+++
T Consensus 339 ~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~ 374 (445)
T PRK08525 339 EGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLR 374 (445)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEE
Confidence 4778999987 47888899999999998887754
No 258
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=36.78 E-value=1.1e+02 Score=22.08 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 101 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 101 ~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
..++......+.++..+++.+............+++.|+. +.+.+||+
T Consensus 136 ~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 183 (202)
T PRK00121 136 PEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF-LVSEAGDY 183 (202)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc-ccccchhh
Confidence 4677777777888888888877766777888888999974 55455544
No 259
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=36.75 E-value=68 Score=25.47 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCc-ceeEecccHHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAGGFAA 151 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~-~v~~l~GG~~~ 151 (161)
.+.+++++|++-..+..++..|+..|.. .+..+.|....
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 4567899999999999999999987653 46667776544
No 260
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=36.39 E-value=61 Score=28.08 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
...+||+|++-..+..++..|...||. +..+.|.+
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~-~~~lhgd~ 279 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYN-SAALNGDM 279 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCC-EEEeeCCC
Confidence 356888999988889999999999994 77788875
No 261
>PRK07036 hypothetical protein; Provisional
Probab=36.20 E-value=90 Score=25.87 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=27.7
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHC-----C---CcceeEecccHHHHh
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWR 153 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~W~ 153 (161)
.+.+-.-|++|++|..|..+|..|.+. | -..|-.+.|+|.+|.
T Consensus 108 ~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 108 APGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCcc
Confidence 443344688899998877766666431 3 234656778887764
No 262
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.98 E-value=96 Score=18.37 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=13.6
Q ss_pred CCchhHHHHHHHHHHCCCcceeEe
Q 031359 122 QSGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 122 ~~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
++|.-+..+|..|...|. +|.++
T Consensus 6 GgG~ig~E~A~~l~~~g~-~vtli 28 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGK-EVTLI 28 (80)
T ss_dssp SSSHHHHHHHHHHHHTTS-EEEEE
T ss_pred CcCHHHHHHHHHHHHhCc-EEEEE
Confidence 555666666666666664 35444
No 263
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=35.95 E-value=93 Score=18.20 Aligned_cols=39 Identities=8% Similarity=-0.030 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcc
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG 141 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~ 141 (161)
..+..+..+..+..+.|.++.......+..+++..||+-
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~ 53 (69)
T cd03420 15 KLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTL 53 (69)
T ss_pred HHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEE
Confidence 345566777778888888887766678888999999963
No 264
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.90 E-value=78 Score=25.11 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=26.2
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
+++.++++++ +|.....++..|++.|-..|+.
T Consensus 217 ~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 251 (332)
T PRK00553 217 KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCV 251 (332)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEE
Confidence 4677888875 6888889999999999887774
No 265
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.87 E-value=77 Score=24.41 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=26.0
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
+++.++++.+ +|.....++..|++.|-..|+.
T Consensus 203 ~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 237 (285)
T PRK00934 203 KGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYV 237 (285)
T ss_pred CCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEE
Confidence 4678888875 6888889999999999877764
No 266
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=35.83 E-value=92 Score=23.86 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=25.4
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
..+++++++ +.|..+..++..|.+.|..++++++-
T Consensus 120 ~~~~~vlil-GaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 120 PPDLVVALR-GSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCCCeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 334556665 66777777888899999988887653
No 267
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=35.56 E-value=1.1e+02 Score=20.96 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHh---cCCCCCeEEEEeCCc
Q 031359 97 MTKNLKFVEEVST---RFRKHDEIIVGCQSG 124 (161)
Q Consensus 97 ~~~~~~~~~~~~~---~l~~~~~ivv~c~~g 124 (161)
..+.++.+.+... .++++..++|.|..|
T Consensus 104 ~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G 134 (149)
T PF14566_consen 104 QAPDPEDIDAFINFVKSLPKDTWLHFHCQAG 134 (149)
T ss_dssp S---HHHHHHHHHHHHTS-TT-EEEEE-SSS
T ss_pred CCCCHHHHHHHHHHHHhCCCCCeEEEECCCC
Confidence 3445555555433 467889999999987
No 268
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=35.53 E-value=89 Score=21.89 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=25.7
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
+++.|+++.+ +|.+...++..|++.|..++++
T Consensus 83 ~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~ 117 (166)
T TIGR01203 83 KGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKI 117 (166)
T ss_pred CCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEE
Confidence 3678888875 6888889999999999877664
No 269
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.52 E-value=1e+02 Score=24.79 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=35.2
Q ss_pred CCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 82 TGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 82 pgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
||..|+|.. ...++.++.+. +.+|+++ +.|.-.+...+-|...||.++.+++-
T Consensus 20 ~gpf~~~~f-------~~~~e~l~~l~-----~~kiLvi-GAGGLGCElLKnLal~gF~~~~viDm 72 (422)
T KOG2015|consen 20 PGPFNLDAF-------EPSEENLEFLQ-----DCKILVI-GAGGLGCELLKNLALSGFRQLHVIDM 72 (422)
T ss_pred CCCCCCCCC-------CCCHHHHHHHh-----hCcEEEE-ccCcccHHHHHhHHhhccceeEEEee
Confidence 566677652 23344455443 4677777 55556678889999999998887753
No 270
>PRK07046 aminotransferase; Validated
Probab=35.45 E-value=35 Score=28.14 Aligned_cols=36 Identities=11% Similarity=-0.014 Sum_probs=26.9
Q ss_pred EEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHH
Q 031359 117 IIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAW 152 (161)
Q Consensus 117 ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W 152 (161)
-|.+|++|..|..+|..|.+. |-++|-.+.|+|.+|
T Consensus 132 ~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~ 169 (453)
T PRK07046 132 YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGT 169 (453)
T ss_pred EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCC
Confidence 467899998888877776553 655666678888777
No 271
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=35.36 E-value=87 Score=25.38 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=25.9
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHH
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAW 152 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W 152 (161)
.-|++|++|..|..+|..|.+. |-+.|-.+.|+|.+|
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~ 133 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGR 133 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCC
Confidence 3578889998888877776553 545566677777665
No 272
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=35.27 E-value=87 Score=21.91 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=25.6
Q ss_pred CCCCeEEEEeC---CchhHHHHHHHHHHCCCccee
Q 031359 112 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 143 (161)
Q Consensus 112 ~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~ 143 (161)
.+++.|+++.+ +|.....++..|++.|.+.+.
T Consensus 107 ~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~ 141 (169)
T TIGR01090 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVE 141 (169)
T ss_pred CCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEE
Confidence 36788988886 688888899999999976444
No 273
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=35.09 E-value=67 Score=26.87 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=27.1
Q ss_pred CCCeEEEEeCC---chhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~~---g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.|++++++ |.+...++..|++.|-+.|++.
T Consensus 355 ~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~r 390 (474)
T PRK06388 355 SGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVR 390 (474)
T ss_pred cCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEE
Confidence 46789999874 8888899999999998877654
No 274
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=34.75 E-value=59 Score=21.14 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=14.8
Q ss_pred CeEEEEeCCchhHHHHHHHHH
Q 031359 115 DEIIVGCQSGKRSMMAATDLL 135 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~~~~~L~ 135 (161)
+.|+++|..|..+...+...+
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~ 22 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMK 22 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHH
Confidence 468999999976665555443
No 275
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=34.60 E-value=1e+02 Score=18.31 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.8
Q ss_pred CCCeEEEEeCCc-hhHHHHHHHHHHCCCc
Q 031359 113 KHDEIIVGCQSG-KRSMMAATDLLNAGFA 140 (161)
Q Consensus 113 ~~~~ivv~c~~g-~~a~~~~~~L~~~G~~ 140 (161)
.+..|++|...+ ..+..+-..|.+.|++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 456688887754 6777788888888876
No 276
>PLN02541 uracil phosphoribosyltransferase
Probab=34.51 E-value=77 Score=23.99 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=23.8
Q ss_pred CCeEEEEeC---CchhHHHHHHHHHHCCCc--ceeE
Q 031359 114 HDEIIVGCQ---SGKRSMMAATDLLNAGFA--GITD 144 (161)
Q Consensus 114 ~~~ivv~c~---~g~~a~~~~~~L~~~G~~--~v~~ 144 (161)
++.|++++. +|..+..+...|++.|.+ ++.+
T Consensus 157 ~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~ 192 (244)
T PLN02541 157 GSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRV 192 (244)
T ss_pred CCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEE
Confidence 456777775 588888899999999986 6553
No 277
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=34.44 E-value=78 Score=22.98 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=25.5
Q ss_pred CeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 115 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
.+|.+ ++.|.-...++..|.+.|+.++.+++..
T Consensus 22 ~~V~I-vG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAI-CGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CcEEE-ECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34444 4777777899999999999888888765
No 278
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=34.41 E-value=97 Score=23.24 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=27.2
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+.+|+++ +.|.-...++..|...|+.++.++++..
T Consensus 32 ~~~Vlii-G~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVV-GLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4455555 6677777999999999999998888754
No 279
>COG1204 Superfamily II helicase [General function prediction only]
Probab=34.27 E-value=1.8e+02 Score=26.08 Aligned_cols=85 Identities=15% Similarity=-0.042 Sum_probs=53.6
Q ss_pred cCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHH
Q 031359 52 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA 131 (161)
Q Consensus 52 i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~ 131 (161)
-...++.++++.+...-|.|+...+.+-...+++-..-..........+...+......+..+..++++|.+...+..+|
T Consensus 191 pN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A 270 (766)
T COG1204 191 PNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTA 270 (766)
T ss_pred CCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHH
Confidence 34577778887765667888877777666666554332100000111223445555666778888999999988888888
Q ss_pred HHHHH
Q 031359 132 TDLLN 136 (161)
Q Consensus 132 ~~L~~ 136 (161)
..|+.
T Consensus 271 ~~l~~ 275 (766)
T COG1204 271 KKLRI 275 (766)
T ss_pred HHHHH
Confidence 87773
No 280
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=34.26 E-value=88 Score=24.95 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=26.3
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
++.++|+ +.|..+..++..|.+.|+.++.+..-
T Consensus 174 ~k~vLvI-GaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 174 KASLLFI-GYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred CCEEEEE-cccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5566665 77899999999999999988876543
No 281
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=34.06 E-value=94 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=23.7
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
++++++++ +.|..+..++..|...|..++.+++-
T Consensus 123 ~~k~vlvl-GaGGaarAi~~~l~~~g~~~i~i~nR 156 (288)
T PRK12749 123 KGKTMVLL-GAGGASTAIGAQGAIEGLKEIKLFNR 156 (288)
T ss_pred CCCEEEEE-CCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 34566666 55555666777888899988887753
No 282
>PF09554 RE_HaeII: HaeII restriction endonuclease; InterPro: IPR019058 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes Type-2 restriction enzyme NgoBI, and HaeII. They recognise the double-stranded sequence RGCGCY and cleaves after C-5.
Probab=34.03 E-value=81 Score=24.43 Aligned_cols=41 Identities=17% Similarity=0.406 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 98 TKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
..+.+..+.....+.. ++||++|.....+ .+...|.+.|+.
T Consensus 237 SL~~~laE~IV~siss-drIvIVCkdaee~-vI~sLlnQIGW~ 277 (338)
T PF09554_consen 237 SLDEELAENIVSSISS-DRIVIVCKDAEES-VIVSLLNQIGWK 277 (338)
T ss_pred cccHHHHHHHHhhccc-CeEEEEecchhHH-HHHHHHHHhhhH
Confidence 3445555556666654 4689999986544 677888999985
No 283
>PLN00203 glutamyl-tRNA reductase
Probab=33.87 E-value=1e+02 Score=26.18 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=25.3
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+++|+|+ +.|..+..++..|...|..+|.+++-
T Consensus 266 ~kkVlVI-GAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 266 SARVLVI-GAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CCEEEEE-eCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4566665 66888888889999999888877653
No 284
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=33.76 E-value=81 Score=25.94 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=28.8
Q ss_pred HHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 107 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 107 ~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
.++.+.+++||++...++..+..-...|+..|++
T Consensus 105 ~LD~~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi~ 138 (479)
T cd01300 105 ELDAVSPDRPVLLLRRDGHSAWVNSAALRLAGIT 138 (479)
T ss_pred HHhcccCCCcEEEEccCchHHHHHHHHHHHcCCC
Confidence 3456668999999999998888888899999985
No 285
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=33.45 E-value=98 Score=25.40 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=27.0
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.-|++|++|..|..+|..|.+. |-+.|-.+.|||.+|.
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 4688899998888777766543 5455666788887764
No 286
>PRK06105 aminotransferase; Provisional
Probab=33.42 E-value=1.1e+02 Score=25.27 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=29.2
Q ss_pred HHhcCCCCCeEEEEeCCchhHHHHHHHHHH-----CCC---cceeEecccHHHHhh
Q 031359 107 VSTRFRKHDEIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWRQ 154 (161)
Q Consensus 107 ~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~-----~G~---~~v~~l~GG~~~W~~ 154 (161)
+....+.+-.-|++|++|..|..+|..|.. .|+ .+|-.+.+||.+|..
T Consensus 101 L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~ 156 (460)
T PRK06105 101 LVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTI 156 (460)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcch
Confidence 333344333457788999887776666632 132 345567788888753
No 287
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=33.32 E-value=93 Score=19.67 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=19.6
Q ss_pred CCeEEEEeCC-chhHHHHHHHHHHCCCc
Q 031359 114 HDEIIVGCQS-GKRSMMAATDLLNAGFA 140 (161)
Q Consensus 114 ~~~ivv~c~~-g~~a~~~~~~L~~~G~~ 140 (161)
+.+|++|+.+ ...+.++...|.+.|++
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~ 34 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVN 34 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4568888775 46777777788888764
No 288
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=33.25 E-value=99 Score=22.56 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 114 HDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 114 ~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
++.|+++.. +|.....+...|++.|-+++++
T Consensus 124 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~ 157 (209)
T PRK00129 124 ERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKV 157 (209)
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHcCCCEEEE
Confidence 456777664 5778888888888888776653
No 289
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=33.25 E-value=90 Score=24.34 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=26.4
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+++.+|++++ +|.....++..|++.|..+++.+.
T Consensus 201 ~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~ 237 (302)
T PLN02369 201 KGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACA 237 (302)
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEE
Confidence 3567888775 578888899999999998877543
No 290
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=33.21 E-value=1.8e+02 Score=24.21 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=42.2
Q ss_pred CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcce
Q 031359 65 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGI 142 (161)
Q Consensus 65 ~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v 142 (161)
-.||.|++.+|.+..-=-|+.-|-..+-.-..+..+.+...++...+++ .+++++.+|..+..-...|+. |++.+
T Consensus 161 ~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~--~~~~vseSGI~t~~d~~~~~~-~~dav 235 (454)
T PRK09427 161 GVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPA--DVIVISESGIYTHAQVRELSP-FANGF 235 (454)
T ss_pred cEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCC--CcEEEEeCCCCCHHHHHHHHh-cCCEE
Confidence 5689999999987432223322222111112223344556666666764 356677888776665555655 66543
No 291
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=33.11 E-value=1.5e+02 Score=23.61 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
....+...+...+.++|+ ++|..+..+|..|.+.|. +|.++.
T Consensus 133 da~~l~~~~~~~~~vvVi-GgG~ig~E~A~~l~~~g~-~Vtlv~ 174 (396)
T PRK09754 133 DAARLREVLQPERSVVIV-GAGTIGLELAASATQRRC-KVTVIE 174 (396)
T ss_pred HHHHHHHHhhcCCeEEEE-CCCHHHHHHHHHHHHcCC-eEEEEe
Confidence 333344444556778877 567778889999999997 477664
No 292
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=33.08 E-value=87 Score=25.85 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=28.3
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEecc
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+++.|+++++ +|.....++..|++.|.+.|.+.-.
T Consensus 337 ~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 337 RGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 4678999987 4888889999999999887775443
No 293
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=33.03 E-value=1e+02 Score=22.52 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=21.3
Q ss_pred CCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 114 HDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 114 ~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
++.|+++.. +|.....+...|++.|.+++.+
T Consensus 122 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v 155 (207)
T TIGR01091 122 ERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKV 155 (207)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHcCCCEEEE
Confidence 455666653 5777777888888888776653
No 294
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=32.95 E-value=1.1e+02 Score=21.78 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=24.3
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCccee
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 143 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~ 143 (161)
+++.|+++.+ +|.....++..|++.|-+.|.
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~ 152 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQVVA 152 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEEEE
Confidence 4678888886 578888899999999976444
No 295
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=32.77 E-value=1.1e+02 Score=18.58 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=23.0
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
.++++ +++.|..+..++..|.+.|...+++++
T Consensus 23 ~~~v~-i~G~G~~g~~~a~~l~~~~~~~v~v~~ 54 (86)
T cd05191 23 GKTVV-VLGAGEVGKGIAKLLADEGGKKVVLCD 54 (86)
T ss_pred CCEEE-EECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 34444 457788888899999998766676553
No 296
>PLN02440 amidophosphoribosyltransferase
Probab=32.56 E-value=80 Score=26.39 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=27.7
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+++.|+++++ +|.+...++..|++.|.+.|++..
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v 375 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRI 375 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4678998887 488888999999999998777543
No 297
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=32.40 E-value=1e+02 Score=25.06 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=25.3
Q ss_pred EEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 117 IIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 117 ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
-+++|++|..|..+|..|.+. |-..|-.+.|||.+|.
T Consensus 103 ~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK06777 103 KTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT 141 (421)
T ss_pred eEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCcc
Confidence 466678998888777766543 5445666778777663
No 298
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=32.35 E-value=1e+02 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=27.0
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.-|++|++|..+..+|..|.+. |-.+|-.+.|+|.+|.
T Consensus 102 ~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 102 KKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRT 141 (425)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCcc
Confidence 3578899998888777766543 5455666788887764
No 299
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=31.97 E-value=73 Score=26.28 Aligned_cols=45 Identities=13% Similarity=0.261 Sum_probs=30.7
Q ss_pred CCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHC
Q 031359 80 HATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 137 (161)
Q Consensus 80 hIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~ 137 (161)
.||||.-.-- ..+.+.+.+.. +..+|+|.++|.|....+..|+..
T Consensus 249 aIPGAFGCGK------------TVISQsLSKYS-NSD~iiYVGCGERGNEMsEVL~dF 293 (618)
T KOG1352|consen 249 AIPGAFGCGK------------TVISQSLSKYS-NSDAIIYVGCGERGNEMSEVLMDF 293 (618)
T ss_pred ccCcccccch------------HHHHHHHhhcc-CCCeEEEEcccccchhHHHHHHhC
Confidence 3777765543 56666666654 445777878888888888888764
No 300
>PRK07480 putative aminotransferase; Validated
Probab=31.76 E-value=1.1e+02 Score=25.35 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=27.9
Q ss_pred HHHhcCCCCCeEEEEeCCchhHHHHHHHHHHC-----C---CcceeEecccHHHHh
Q 031359 106 EVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWR 153 (161)
Q Consensus 106 ~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~W~ 153 (161)
.+.+.++.+-.-+++|++|..|..+|..|.+. | -.+|..+.|+|.+|.
T Consensus 102 ~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 157 (456)
T PRK07480 102 KLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGST 157 (456)
T ss_pred HHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcc
Confidence 33333443333567789998877766655432 3 224555677777764
No 301
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=31.73 E-value=91 Score=25.85 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=26.3
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.+|++++ +|..-..++..|++.|-..|+.+
T Consensus 334 ~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~ 369 (439)
T PTZ00145 334 YDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAF 369 (439)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 4567888765 67888899999999999888753
No 302
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=31.46 E-value=1.4e+02 Score=25.90 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=30.1
Q ss_pred CCCCeEEEEeCCc----hhHHHHHHHHHHCCCcceeEeccc---HHHHhhCC
Q 031359 112 RKHDEIIVGCQSG----KRSMMAATDLLNAGFAGITDIAGG---FAAWRQNG 156 (161)
Q Consensus 112 ~~~~~ivv~c~~g----~~a~~~~~~L~~~G~~~v~~l~GG---~~~W~~~g 156 (161)
..+..|+|+|.+. ..+..++..|+..|-..| +|.|- +.+|..+|
T Consensus 544 ~sga~i~viCssD~~Y~~~a~~~~~al~~ag~~~v-~lAG~p~~~~~~~~aG 594 (619)
T TIGR00642 544 KAGAQVAVLCSSDKVYAQQGLEVAKALKAAGAKAL-YLAGAFKEFGDDAAEA 594 (619)
T ss_pred hcCCCEEEEeCCCcchHHHHHHHHHHHHhCCCCEE-EEeCCCcchhhHHhcC
Confidence 3567899999986 356677889999998633 45553 33466665
No 303
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=31.20 E-value=1.3e+02 Score=24.69 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=27.5
Q ss_pred HHhcCCCCCeEEEEeCCchhHHHHHHHHHHC-----C---CcceeEecccHHH
Q 031359 107 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAA 151 (161)
Q Consensus 107 ~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~ 151 (161)
+...++.+-.-|++|++|..|..+|..|.+. | -..|-.+.||+.+
T Consensus 96 L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG 148 (429)
T PRK06173 96 LLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHG 148 (429)
T ss_pred HHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCC
Confidence 3333443334688899998887777666442 2 3345567777765
No 304
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=31.19 E-value=1.1e+02 Score=24.85 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=25.8
Q ss_pred EEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 117 IIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 117 ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
-+++|++|..|..+|..|.+. |-.+|..+.|||.+|.
T Consensus 103 ~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK09792 103 KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT 141 (421)
T ss_pred eEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 466677998888777766553 5455666788887763
No 305
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=31.08 E-value=95 Score=22.77 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=6.8
Q ss_pred CCeEEEEeCCc
Q 031359 114 HDEIIVGCQSG 124 (161)
Q Consensus 114 ~~~ivv~c~~g 124 (161)
-.+++|||.++
T Consensus 14 ~~~i~V~~gs~ 24 (205)
T COG1611 14 IRQIVVICGSA 24 (205)
T ss_pred cceEEEEEeCC
Confidence 45667777654
No 306
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=30.97 E-value=1.6e+02 Score=19.28 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCCCeEEEEeCC--chhHHHHHHHHHHCCCcceeEecc
Q 031359 103 FVEEVSTRFRKHDEIIVGCQS--GKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~--g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
.+.+....++.++.|+|.++- |.-...+...+.+ +++++++.|
T Consensus 47 ~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~--~~~~~vIsG 91 (116)
T TIGR00824 47 KYNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVD--KPHMDVIAG 91 (116)
T ss_pred HHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh--cCCEEEEEe
Confidence 344455566666777777763 4333333333333 346776655
No 307
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=30.97 E-value=1.5e+02 Score=21.34 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCCCCeEEEEeC---CchhHHHHHHHHHHCCCccee---EecccHHHH----hhCCCCCC
Q 031359 111 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIAGGFAAW----RQNGLPTE 160 (161)
Q Consensus 111 l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~GG~~~W----~~~g~p~~ 160 (161)
+.++++|+++.+ +|.....+...+++.|-+-+. +++.+..+| .+.|.|+.
T Consensus 114 i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~g~~~~ 173 (189)
T PRK09219 114 LSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGYRVE 173 (189)
T ss_pred CCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCccHHHHHHhcCCcEE
Confidence 467889999986 688888888999999975222 344332223 34576653
No 308
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=30.80 E-value=1.9e+02 Score=20.28 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=47.9
Q ss_pred cccCHHHHHHHHhCC---CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc---CCCCCeEEEEeCC
Q 031359 50 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FRKHDEIIVGCQS 123 (161)
Q Consensus 50 ~~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~---l~~~~~ivv~c~~ 123 (161)
..++-.++++.+..+ .+++|.+. |.+|.....++- + .+|+..--.. +-...-|-+||..
T Consensus 55 ~~~~G~~lk~~l~~~~YYlIF~dLkA---fp~~~~~~~I~t-y-----------eeFl~S~CelvllIvD~~yv~IycKd 119 (153)
T PF10903_consen 55 EIMTGSELKKLLKDNDYYLIFLDLKA---FPKGETVTEINT-Y-----------EEFLNSKCELVLLIVDSSYVSIYCKD 119 (153)
T ss_pred eeeehHHHHHHhhcCCeEEEEEEeee---CcCCCCcccccc-H-----------HHHhcCCceEEEEEEeccEEEEEEcC
Confidence 457778888888754 34556652 333322222111 0 1222221111 1235567889988
Q ss_pred chhHHHHHHHHHHCCCcceeEec
Q 031359 124 GKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 124 g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
-..-..........||.++..+.
T Consensus 120 ~~~i~~lyqna~~~gy~~i~yIT 142 (153)
T PF10903_consen 120 QEIIESLYQNAQNQGYENIEYIT 142 (153)
T ss_pred HHHHHHHHHHHHHCCceEEEEEe
Confidence 77777888888999999998764
No 309
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=30.75 E-value=1.1e+02 Score=25.25 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=26.0
Q ss_pred eEEEEeCCchhHHHHHHHHHH-----CCC---cceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~-----~G~---~~v~~l~GG~~~W~ 153 (161)
.-+++|++|..|..+|..+.. .|+ .+|-.+.+||.+|.
T Consensus 115 ~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t 160 (453)
T PRK06943 115 GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGET 160 (453)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCc
Confidence 357889999888777776642 243 34666788887765
No 310
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=30.74 E-value=95 Score=23.83 Aligned_cols=34 Identities=29% Similarity=0.215 Sum_probs=25.9
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
+..|+|+ +.|.-...++..|.+.|+.++.+++.-
T Consensus 30 ~s~VlVv-G~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 30 DAHICVV-GIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCCEEEE-CcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3445444 777777899999999999888887754
No 311
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=30.64 E-value=1.2e+02 Score=26.15 Aligned_cols=28 Identities=14% Similarity=0.388 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 127 SMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
+..+|.+++.+|+ +|.++.....-|..+
T Consensus 307 g~TiAEYfRD~G~-~Vllm~DS~sR~AeA 334 (578)
T TIGR01043 307 GITIAEYFRDMGY-DVALMADSTSRWAEA 334 (578)
T ss_pred HHHHHHHHHHCCC-CEEEEecChhHHHHH
Confidence 3457889999998 588888899999764
No 312
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=30.63 E-value=87 Score=25.35 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=28.1
Q ss_pred CeEEEEeCC--c----hhHHHHHHHHHHC--CCcceeEecccHH
Q 031359 115 DEIIVGCQS--G----KRSMMAATDLLNA--GFAGITDIAGGFA 150 (161)
Q Consensus 115 ~~ivv~c~~--g----~~a~~~~~~L~~~--G~~~v~~l~GG~~ 150 (161)
..|++||.. | .|+..+|..|.+- |++ |.++.||-.
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~-Il~IsG~~~ 52 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLGFD-ILIISGGPP 52 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccCce-EEEEeCCCc
Confidence 479999974 3 6888999999876 984 989998753
No 313
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=30.50 E-value=1.2e+02 Score=24.87 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=24.4
Q ss_pred eEEEEeCCchhHHHHHHHHHHC-----C---CcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~W~ 153 (161)
.-|++|++|..|..+|..|.+. | -.++-.+.|||.+|.
T Consensus 110 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 155 (445)
T PRK09221 110 DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVG 155 (445)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccc
Confidence 3567789998777766655432 3 234656778887663
No 314
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=30.31 E-value=1e+02 Score=18.95 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=18.0
Q ss_pred CCeEEEEeC------CchhHHHHHHHHHHCCCc
Q 031359 114 HDEIIVGCQ------SGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 114 ~~~ivv~c~------~g~~a~~~~~~L~~~G~~ 140 (161)
+.+||++.. ....+..+...|.+.|.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~ 39 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD 39 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 456777755 235677777788887764
No 315
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=30.20 E-value=1.2e+02 Score=17.70 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcc
Q 031359 103 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG 141 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~ 141 (161)
.....+..+..+..+.+..+.......+..+++..||+=
T Consensus 15 ~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~ 53 (69)
T cd03423 15 MLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHEL 53 (69)
T ss_pred HHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEE
Confidence 345566777778877777777666678889999999963
No 316
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=30.19 E-value=1.2e+02 Score=21.22 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=25.4
Q ss_pred CCCCeEEEEeC---CchhHHHHHHHHHHCCCccee
Q 031359 112 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 143 (161)
Q Consensus 112 ~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~ 143 (161)
.+++.|+++.+ +|.....++..|++.|.+.+.
T Consensus 112 ~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~ 146 (175)
T PRK02304 112 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVG 146 (175)
T ss_pred CCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEE
Confidence 46788999886 577888888999999986543
No 317
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=30.19 E-value=99 Score=27.08 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=28.3
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+.+|+++ +.|.-.+.++..|...|+.++.+++.+.
T Consensus 338 ~~kVLIv-GaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 338 QLKVLLL-GAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred cCeEEEE-CCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 4556665 6777778999999999999999998764
No 318
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=30.17 E-value=1.1e+02 Score=24.23 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=27.9
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
+..|+|+ +.|.-...++..|...|+.++.+++...-
T Consensus 24 ~~~VlIi-G~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIV-GAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3445555 66777789999999999988988887653
No 319
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=30.17 E-value=1.6e+02 Score=19.04 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHCCCcceeEecccHHHHhhCCCCC
Q 031359 126 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 159 (161)
Q Consensus 126 ~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 159 (161)
.....+..|..+||+ ++.-.|-.....+.|.++
T Consensus 14 ~~~~~a~~l~~~G~~-i~aT~gTa~~L~~~gi~~ 46 (116)
T cd01423 14 ELLPTAQKLSKLGYK-LYATEGTADFLLENGIPV 46 (116)
T ss_pred hHHHHHHHHHHCCCE-EEEccHHHHHHHHcCCCc
Confidence 344667777777874 654433333334445543
No 320
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=30.11 E-value=1.2e+02 Score=19.35 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHCCCcceeEecccHHHH-hhCCCC
Q 031359 126 RSMMAATDLLNAGFAGITDIAGGFAAW-RQNGLP 158 (161)
Q Consensus 126 ~a~~~~~~L~~~G~~~v~~l~GG~~~W-~~~g~p 158 (161)
.....+..|.+.||+ ++.-.| ...| .+.|.+
T Consensus 14 ~~~~~~~~l~~~G~~-l~aT~g-T~~~l~~~gi~ 45 (110)
T cd01424 14 EAVEIAKRLAELGFK-LVATEG-TAKYLQEAGIP 45 (110)
T ss_pred HHHHHHHHHHHCCCE-EEEchH-HHHHHHHcCCe
Confidence 444566677777774 554333 3333 334544
No 321
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.02 E-value=2.2e+02 Score=23.25 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHHCCCcceeEeccc
Q 031359 123 SGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 123 ~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
+|......+..|...|++ |.++.|.
T Consensus 213 SG~~G~aiA~~l~~~Ga~-V~~v~~~ 237 (399)
T PRK05579 213 SGKMGYALARAAARRGAD-VTLVSGP 237 (399)
T ss_pred cchHHHHHHHHHHHCCCE-EEEeCCC
Confidence 566788899999999984 7766654
No 322
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=29.93 E-value=1.1e+02 Score=24.85 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=25.7
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
+++.+|++.+ +|..-..++..|++.|-..|+.
T Consensus 263 ~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~ 297 (382)
T PRK06827 263 EGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIV 297 (382)
T ss_pred CCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 3567888875 6788889999999999988774
No 323
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=29.92 E-value=2.3e+02 Score=21.00 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=20.1
Q ss_pred CCeEEEEeCCchhHHHHHH-HHHHCCCc
Q 031359 114 HDEIIVGCQSGKRSMMAAT-DLLNAGFA 140 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~-~L~~~G~~ 140 (161)
.+..+++|.....+..... ..++.|++
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 5778999998887775444 55678986
No 324
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=29.73 E-value=1.3e+02 Score=24.37 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 127 SMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
+...|..++++|+ +|.++......|..+
T Consensus 242 a~tiAEYfrd~G~-dVll~~Ds~tR~A~A 269 (369)
T cd01134 242 GITIAEYFRDMGY-NVALMADSTSRWAEA 269 (369)
T ss_pred HHHHHHHHHHcCC-CEEEEEcChhHHHHH
Confidence 4457778999997 588888889888754
No 325
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=29.63 E-value=1.2e+02 Score=25.13 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=26.4
Q ss_pred eEEEEeCCchhHHHHHHHHHH--CCCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLN--AGFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~--~G~~~v~~l~GG~~~W~ 153 (161)
.+++++++|..|..+|..|.+ .|-.+|-.+.|||.+|.
T Consensus 122 ~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t 161 (459)
T PRK06931 122 CLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMT 161 (459)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 466776899888877776654 36556666788887664
No 326
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=29.61 E-value=1.2e+02 Score=25.13 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=35.2
Q ss_pred HHHHHHhcCCC-CCeEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 103 FVEEVSTRFRK-HDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 103 ~~~~~~~~l~~-~~~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
+.+.+.+.++. ....+++.++|..|-.+|..+.+. |-.+|-.+.|+|.+..
T Consensus 104 ~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T 157 (447)
T COG0160 104 LAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRT 157 (447)
T ss_pred HHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccc
Confidence 44445555555 467788889998888888877654 5556777888887653
No 327
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=29.61 E-value=1.4e+02 Score=20.67 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=22.6
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+++|+|+ ++|.-+.+-+..|.+.|. +|.++.
T Consensus 13 ~~~vlVv-GGG~va~rka~~Ll~~ga-~V~VIs 43 (157)
T PRK06719 13 NKVVVII-GGGKIAYRKASGLKDTGA-FVTVVS 43 (157)
T ss_pred CCEEEEE-CCCHHHHHHHHHHHhCCC-EEEEEc
Confidence 5566665 777788888888888887 476664
No 328
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=29.58 E-value=1.3e+02 Score=21.95 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHCCCcceeEeccc
Q 031359 126 RSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 126 ~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
-|..+...|.++|+ ++++|+|-
T Consensus 39 iA~ale~~L~~~G~-~~y~LDGD 60 (197)
T COG0529 39 IANALEEKLFAKGY-HVYLLDGD 60 (197)
T ss_pred HHHHHHHHHHHcCC-eEEEecCh
Confidence 45567778999998 69999983
No 329
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=29.57 E-value=1.8e+02 Score=22.25 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=32.6
Q ss_pred CHHHHHHHHhcCCCCCeEEEEeC--CchhHHHHHHHHHHCCCcceeEeccc
Q 031359 100 NLKFVEEVSTRFRKHDEIIVGCQ--SGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 100 ~~~~~~~~~~~l~~~~~ivv~c~--~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
+++.+.+....+.+.+.|+++.. ++.-+..++..|..+|.. +..+.+.
T Consensus 116 ~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~-~~~~~d~ 165 (281)
T COG1737 116 DEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLN-VVALSDT 165 (281)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCc-eeEecch
Confidence 44566666666767788888863 235566778889999985 5555543
No 330
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=29.04 E-value=1.4e+02 Score=21.46 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=25.7
Q ss_pred CCCCeEEEEeC---CchhHHHHHHHHHHCCCccee
Q 031359 112 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 143 (161)
Q Consensus 112 ~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~ 143 (161)
.+++.|+++.+ +|.....++..|++.|.+.+.
T Consensus 103 ~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~ 137 (187)
T TIGR01367 103 KPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVG 137 (187)
T ss_pred CCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEE
Confidence 46788999886 688888899999999986543
No 331
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=29.03 E-value=1.1e+02 Score=19.23 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=19.2
Q ss_pred CCeEEEEeC------CchhHHHHHHHHHHCCCc
Q 031359 114 HDEIIVGCQ------SGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 114 ~~~ivv~c~------~g~~a~~~~~~L~~~G~~ 140 (161)
+.+||+|.. ....+.++-..|.+.|++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~ 43 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVP 43 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC
Confidence 567888864 245677788888888875
No 332
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=29.00 E-value=1.1e+02 Score=22.05 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=28.5
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W 152 (161)
+.+|+++ +.|.-...++..|...|+.++.++|...-++
T Consensus 21 ~s~VlIi-G~gglG~evak~La~~GVg~i~lvD~d~ve~ 58 (197)
T cd01492 21 SARILLI-GLKGLGAEIAKNLVLSGIGSLTILDDRTVTE 58 (197)
T ss_pred hCcEEEE-cCCHHHHHHHHHHHHcCCCEEEEEECCcccH
Confidence 3445554 6666788999999999999999888764433
No 333
>PRK08328 hypothetical protein; Provisional
Probab=28.88 E-value=1.1e+02 Score=22.68 Aligned_cols=35 Identities=23% Similarity=0.089 Sum_probs=26.9
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+.+|+++ +.|.-...++..|...|+.++.++|...
T Consensus 27 ~~~VlIi-G~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVV-GVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3445554 7777778999999999999998887654
No 334
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.85 E-value=1e+02 Score=24.38 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=25.6
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.+|++.+ +|.....++..|++.|-+.|+.+
T Consensus 229 ~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~ 264 (330)
T PRK02812 229 KGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYAC 264 (330)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEE
Confidence 3567777765 57788889999999998887754
No 335
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=28.77 E-value=1.1e+02 Score=25.99 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCCeEEEEeCC---chhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~~---g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.|++++++ |.+...++..|++.|-+.|.+.
T Consensus 366 ~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~r 401 (510)
T PRK07847 366 RGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVR 401 (510)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEE
Confidence 56789998874 7888899999999998877654
No 336
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=28.56 E-value=1e+02 Score=25.10 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=27.0
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.-+++|++|..|..+|..|.+. |-..|-.+.|||.+|.
T Consensus 110 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 149 (428)
T PRK12389 110 EKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHS 149 (428)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCh
Confidence 3577789998888877776553 5455666788887764
No 337
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=28.53 E-value=2e+02 Score=21.36 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcc-eeEec
Q 031359 107 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG-ITDIA 146 (161)
Q Consensus 107 ~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~-v~~l~ 146 (161)
....++.+.+|+.+.....++..|...+++.|+++ |..+.
T Consensus 77 mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 77 MALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred HHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 34446656677777667788889999999999987 44444
No 338
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=28.50 E-value=1.2e+02 Score=26.09 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=22.7
Q ss_pred HHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 127 SMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
+..+|.+++.+|+ +|.++......|..+
T Consensus 312 giTiAEYfRd~G~-~Vllm~DStSR~AeA 339 (586)
T PRK04192 312 GITIAEYYRDMGY-DVLLMADSTSRWAEA 339 (586)
T ss_pred HHHHHHHHHHCCC-CEEEEecChHHHHHH
Confidence 4467778999998 688888999999765
No 339
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=28.50 E-value=1.4e+02 Score=21.59 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=23.6
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
++.|+|+ ++|.-+...+..|.+.|. +|.++.-.
T Consensus 10 ~k~vLVI-GgG~va~~ka~~Ll~~ga-~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIV-GGGKVAGRRAITLLKYGA-HIVVISPE 42 (202)
T ss_pred CCEEEEE-CCCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 5566665 667788888888888985 57766433
No 340
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=28.45 E-value=1.3e+02 Score=24.63 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=25.6
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHC-----C---CcceeEecccHHHH
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAW 152 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~-----G---~~~v~~l~GG~~~W 152 (161)
.+.+-.-|++|++|..|..+|..|.+. | -.++-.+.|+|.++
T Consensus 96 ~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~ 145 (422)
T PRK05630 96 TDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGD 145 (422)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence 333334578899998877777666432 2 22355667777654
No 341
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.36 E-value=1.4e+02 Score=18.38 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=23.3
Q ss_pred CeEEEEeCCchhHHHHHHHHHHCCCccee-EecccHHH
Q 031359 115 DEIIVGCQSGKRSMMAATDLLNAGFAGIT-DIAGGFAA 151 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~~~~~L~~~G~~~v~-~l~GG~~~ 151 (161)
++++++.+.....+.+...|++.+++--+ .+.+++..
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~N 40 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMAN 40 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhh
Confidence 46677777666667778888888765322 24455544
No 342
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=28.33 E-value=2.4e+02 Score=23.52 Aligned_cols=41 Identities=10% Similarity=0.241 Sum_probs=27.4
Q ss_pred CCeEEEEeCCc----------hhHHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 114 HDEIIVGCQSG----------KRSMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 114 ~~~ivv~c~~g----------~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
++.|+|+..+. ..+..+|.+++..|+ +|-++-..+.-|..+
T Consensus 217 ~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~-~VLl~~DslTR~A~A 267 (444)
T PRK08972 217 ARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGL-NVLLLMDSLTRYAQA 267 (444)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEcChHHHHHH
Confidence 46666666553 234457778888996 587777778777554
No 343
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=28.23 E-value=1.2e+02 Score=24.14 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=25.5
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeE
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 144 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~ 144 (161)
+++.++++.+ +|..-..++..|++.|-+.|+.
T Consensus 229 ~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~ 263 (326)
T PLN02297 229 AGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSA 263 (326)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEE
Confidence 4677888775 6788888999999999887774
No 344
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=28.23 E-value=1.2e+02 Score=23.62 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=25.6
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.++++.+ +|.....++..|++.|-++++.+
T Consensus 209 ~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~ 244 (308)
T TIGR01251 209 EGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAA 244 (308)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 4667878765 57788889999999998887643
No 345
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=28.11 E-value=2.9e+02 Score=21.45 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=58.2
Q ss_pred CcccCHHHHHHHHhCCCEEE-EcCChhhHhcCCC-CCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCc--
Q 031359 49 PTSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHA-TGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG-- 124 (161)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~li-DvR~~~e~~~ghI-pgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g-- 124 (161)
+..+|...++.+.+-++++. |.|...... .|+ .+..-+.+.. ....+....+...+..++.|+++|+.|
T Consensus 24 ~edITlRAl~~L~~aDvI~~edtr~t~~ll-~~~~i~~~~~~~~~------~~~~~~~~~i~~~l~~G~~ValvSdaGdP 96 (287)
T PRK14994 24 LADITQRALEVLQAVDLIAAEDTRHTGLLL-QHFAINARLFALHD------HNEQQKAETLLAKLQEGQNIALVSDAGTP 96 (287)
T ss_pred hHHhhHHHHHHHHhCCEEEEeCCcchHHHH-hhcCCCCEEEEccC------CCHHHHHHHHHHHHHCCCeEEEEccCCCC
Confidence 34577777776666665554 666543222 222 1222222210 112244555566666788888887655
Q ss_pred ---hhHHHHHHHHHHCCCcceeEecccH---HHHhhCCCCC
Q 031359 125 ---KRSMMAATDLLNAGFAGITDIAGGF---AAWRQNGLPT 159 (161)
Q Consensus 125 ---~~a~~~~~~L~~~G~~~v~~l~GG~---~~W~~~g~p~ 159 (161)
.........+++.|++ |.++.|-- .+....|+|.
T Consensus 97 ~I~dpg~~Lv~~~~~~gi~-v~vIPGiSA~~aA~a~sG~~~ 136 (287)
T PRK14994 97 LINDPGYHLVRTCREAGIR-VVPLPGPCAAITALSAAGLPS 136 (287)
T ss_pred ceeCCHHHHHHHHHHCCCC-EEEeCCHHHHHHHHHHcCCCC
Confidence 3455777788888985 87777632 3445556663
No 346
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=27.99 E-value=2.9e+02 Score=21.39 Aligned_cols=27 Identities=7% Similarity=-0.018 Sum_probs=18.5
Q ss_pred HHHHHHHHHHCCCcceeEecccHHHHhh
Q 031359 127 SMMAATDLLNAGFAGITDIAGGFAAWRQ 154 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v~~l~GG~~~W~~ 154 (161)
+..+|..++..|. +|-++-..+..|..
T Consensus 149 a~aiAE~fr~~G~-~Vlvl~DslTr~A~ 175 (274)
T cd01132 149 GCAMGEYFMDNGK-HALIIYDDLSKQAV 175 (274)
T ss_pred HHHHHHHHHHCCC-CEEEEEcChHHHHH
Confidence 4567778888886 57766666766643
No 347
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=27.96 E-value=1.5e+02 Score=24.36 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=26.6
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.-+++|++|..|..+|..|.+. |-++|-.+.|+|.+|.
T Consensus 118 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 118 KRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRT 157 (443)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcCh
Confidence 3577889998877777766542 5556667788887764
No 348
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=27.90 E-value=1.5e+02 Score=24.84 Aligned_cols=50 Identities=24% Similarity=0.273 Sum_probs=34.6
Q ss_pred CCCCCeEEEEeC---CchhHHHHHHHHHHCCCccee---Eec---ccHHHHhhCCCCCC
Q 031359 111 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPTE 160 (161)
Q Consensus 111 l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~p~~ 160 (161)
+.++++|+++.+ +|.....++..|++.|.+-+. +++ ||-....+.|+|+.
T Consensus 390 ~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~g~~~~L~~~gv~~~ 448 (477)
T PRK05500 390 FHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQGVKDKLQSHGYQAY 448 (477)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCcchHHHHHhcCCCEE
Confidence 557788999886 688888999999999975222 222 44444446677763
No 349
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=27.81 E-value=1.5e+02 Score=23.64 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=28.5
Q ss_pred hcCCCCCeEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHH
Q 031359 109 TRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFA 150 (161)
Q Consensus 109 ~~l~~~~~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~ 150 (161)
+.++ +-.++++|++|..+...|..|.+. ++++|-.|+--+.
T Consensus 97 stlP-eLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYH 139 (452)
T KOG1403|consen 97 STLP-ELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYH 139 (452)
T ss_pred hcCC-CceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhc
Confidence 3344 467899999998888877777653 6666766665443
No 350
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=27.76 E-value=1.2e+02 Score=21.81 Aligned_cols=38 Identities=21% Similarity=0.094 Sum_probs=26.0
Q ss_pred CCCCeEEEEeCCc--hhHHHHHHHHHHCCCc-cee---EecccH
Q 031359 112 RKHDEIIVGCQSG--KRSMMAATDLLNAGFA-GIT---DIAGGF 149 (161)
Q Consensus 112 ~~~~~ivv~c~~g--~~a~~~~~~L~~~G~~-~v~---~l~GG~ 149 (161)
.+.--|.+||+.| ...+.....++..|+- +|. .+.|++
T Consensus 19 ~~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~ 62 (178)
T PRK07414 19 TIEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGI 62 (178)
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCC
Confidence 3556789999875 5666777788888763 444 466763
No 351
>PLN02347 GMP synthetase
Probab=27.71 E-value=1.9e+02 Score=24.70 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=29.9
Q ss_pred HHHHhcCCCCCeEEEEeCCchhHHHHHHHHHH-CCCccee--EecccH
Q 031359 105 EEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-AGFAGIT--DIAGGF 149 (161)
Q Consensus 105 ~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~-~G~~~v~--~l~GG~ 149 (161)
+.+...+.++..+++.-.+|..|..++..+.+ .|. ++. .++.|+
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~-~v~av~id~g~ 266 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGL 266 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCC-cEEEEEEeCCC
Confidence 33444455566677777888999999998888 684 555 456554
No 352
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.71 E-value=1.3e+02 Score=17.20 Aligned_cols=37 Identities=5% Similarity=-0.029 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 104 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 104 ~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
+...+..+..+..+.+..+.......+...++..||+
T Consensus 16 ~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~ 52 (69)
T cd00291 16 TKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHE 52 (69)
T ss_pred HHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCE
Confidence 4455666777888888877766666788899999996
No 353
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=27.69 E-value=1.8e+02 Score=18.98 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCCCeEEEEeCC-chhHHHHHHHHHHCCCcceeEecc
Q 031359 103 FVEEVSTRFRKHDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 103 ~~~~~~~~l~~~~~ivv~c~~-g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
.+.+....++.++.+++.++- |..-..++..+.... .+++++.|
T Consensus 46 ~i~~~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~-~~~~visG 90 (122)
T cd00006 46 KIKAALAELDSGEGVLILTDLFGGSPNNAAARLSMEH-PPVEVIAG 90 (122)
T ss_pred HHHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcC-CCEEEEEc
Confidence 444555556656677777774 433334444444332 46666654
No 354
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=27.68 E-value=2.7e+02 Score=21.06 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=38.4
Q ss_pred CEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcce
Q 031359 65 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGI 142 (161)
Q Consensus 65 ~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v 142 (161)
.+++|+.+.+|...-.=-|+--|-...........+.+...++...++.+ +++++-+|..+..-+..+...|++-|
T Consensus 162 ~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~--~~vIaegGI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 162 DVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSD--RLVVSESGIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred eEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCC--CEEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 45778877766542111122211111000011122334455555555432 45566778776777778888898755
No 355
>PLN02293 adenine phosphoribosyltransferase
Probab=27.62 E-value=1.6e+02 Score=21.21 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=26.3
Q ss_pred CCCCCeEEEEeC---CchhHHHHHHHHHHCCCccee
Q 031359 111 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 143 (161)
Q Consensus 111 l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~ 143 (161)
+.+++.|+++.+ +|.....+...|++.|-+.+.
T Consensus 122 i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~ 157 (187)
T PLN02293 122 VEPGERALVIDDLIATGGTLCAAINLLERAGAEVVE 157 (187)
T ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEE
Confidence 557888999886 588888899999999976443
No 356
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=27.41 E-value=2.3e+02 Score=20.10 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=54.1
Q ss_pred CCcccCHHHHHHHHhCCCEEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHH--HhcCCCCCeEEEEeCCc-
Q 031359 48 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSG- 124 (161)
Q Consensus 48 ~~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ivv~c~~g- 124 (161)
.+..+|....+.+.+.+.++.+-|..+.+.. +++. ..|.............+..+.. ......++.|++.+.+.
T Consensus 11 ~~~~lT~~a~~~l~~advv~~~~r~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~V~~l~~GDP 87 (210)
T PF00590_consen 11 DPDLLTLRALEALKNADVVIGPERALEIVRD-LLPE--IFPMGKDRESLEESYDEIAEIIEAIEAAKEGKDVVVLVSGDP 87 (210)
T ss_dssp SGGGSBHHHHHHHHHSSEEEEETTCHHHHHH-HHHT--EETTSSEEEEEHHHHHHHHHHHHHHHHHHTTSEEEEEESBST
T ss_pred CHHHHHHHHHHHHHhCCcccccccchHHHHh-hccc--cccccccccchhhhhhHHHHHHHHHHHHhccCCEEEeCCCCC
Confidence 3456788888888778888889986555532 2111 1111000000000001222222 33445567777776432
Q ss_pred ---hhHHHHHHHHHH--CCCcceeEeccc--H-HHHhhCCCCCC
Q 031359 125 ---KRSMMAATDLLN--AGFAGITDIAGG--F-AAWRQNGLPTE 160 (161)
Q Consensus 125 ---~~a~~~~~~L~~--~G~~~v~~l~GG--~-~~W~~~g~p~~ 160 (161)
.........+.. .|++ +.++.|= + .+....|.|+.
T Consensus 88 ~~~~~~~~l~~~l~~~~~gi~-v~iiPGiSs~~~a~a~~g~~~~ 130 (210)
T PF00590_consen 88 LFFSTGSYLVRALRAEERGIE-VEIIPGISSFQAAAARLGIPLT 130 (210)
T ss_dssp TSSSSHHHHHHHHHHHHTTCE-EEEE--TTHHHHHHHHCTSTSS
T ss_pred CcccHHHHHHHHHHhhcCCCc-eEEEecCcHHHHHHHHHcCCcc
Confidence 345566677877 8885 7777761 2 23344565543
No 357
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=27.28 E-value=1.6e+02 Score=18.93 Aligned_cols=7 Identities=43% Similarity=0.577 Sum_probs=3.2
Q ss_pred HHHHCCC
Q 031359 133 DLLNAGF 139 (161)
Q Consensus 133 ~L~~~G~ 139 (161)
.|++.|+
T Consensus 37 ~L~~~Gi 43 (112)
T cd00532 37 VLADAGI 43 (112)
T ss_pred HHHHcCC
Confidence 3444554
No 358
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=27.25 E-value=1.5e+02 Score=27.36 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=30.2
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
..+++|+|.|.+-..|..++..|...|+. ..+|++.
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~-h~vLnak 631 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIA-HNVLNAK 631 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCC-ceeecCC
Confidence 46889999999999999999999999996 3456654
No 359
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=27.20 E-value=1.4e+02 Score=24.49 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=26.7
Q ss_pred CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 112 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
...++|+|+ ++|..+..+|..|...|.++|.++.
T Consensus 271 ~~g~~VvVi-GgG~~g~e~A~~l~~~G~~~Vtlv~ 304 (457)
T PRK11749 271 PVGKRVVVI-GGGNTAMDAARTAKRLGAESVTIVY 304 (457)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCeEEEee
Confidence 356778877 6678888999999999987788664
No 360
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.18 E-value=1.3e+02 Score=23.98 Aligned_cols=35 Identities=26% Similarity=0.149 Sum_probs=26.9
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+.+|+++ +.|.-...++..|...|+.++.+++...
T Consensus 28 ~~~Vliv-G~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVI-GAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4455554 6666777899999999999999888754
No 361
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=27.18 E-value=2e+02 Score=20.43 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=24.1
Q ss_pred CCCeEEEEeCC--chhHHHHHHHHHHCCCc--ceeEecc
Q 031359 113 KHDEIIVGCQS--GKRSMMAATDLLNAGFA--GITDIAG 147 (161)
Q Consensus 113 ~~~~ivv~c~~--g~~a~~~~~~L~~~G~~--~v~~l~G 147 (161)
++.+++++.-| |.-|..+|..|.+.|++ .|..+++
T Consensus 64 ~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 64 PEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp SSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred CCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 34477777655 67888999999999985 2444553
No 362
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=27.17 E-value=2.5e+02 Score=23.14 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=27.9
Q ss_pred CCeEEEEeCCch----------hHHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 114 HDEIIVGCQSGK----------RSMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 114 ~~~ivv~c~~g~----------~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
++.|||+..+.. .+..+|.+++..|. +|-++-..+.-|..+
T Consensus 195 ~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd~G~-~Vll~~DslTr~A~A 245 (418)
T TIGR03498 195 KRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGK-DVLLLMDSVTRFAMA 245 (418)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEeccchhHHHHH
Confidence 456666655542 45567888999996 687777778777654
No 363
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=26.91 E-value=95 Score=22.78 Aligned_cols=30 Identities=20% Similarity=0.435 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHCCCcceeEecc-cHHHHhh
Q 031359 125 KRSMMAATDLLNAGFAGITDIAG-GFAAWRQ 154 (161)
Q Consensus 125 ~~a~~~~~~L~~~G~~~v~~l~G-G~~~W~~ 154 (161)
..+..+...|...|+.||.++.| |..+|..
T Consensus 108 ~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 108 ELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 34445555666777777775543 5666644
No 364
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=26.80 E-value=1.2e+02 Score=22.62 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=26.8
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+.+|+++ +.|.-...++..|...|+.++.++|...
T Consensus 24 ~~~Vlvv-G~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIV-GLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEE-CcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 3455555 6677777999999999999988887654
No 365
>PRK09401 reverse gyrase; Reviewed
Probab=26.77 E-value=1.6e+02 Score=27.85 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHhcCCCCCeEEEEeCCchh---HHHHHHHHHHCCCcceeEecccH
Q 031359 104 VEEVSTRFRKHDEIIVGCQSGKR---SMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 104 ~~~~~~~l~~~~~ivv~c~~g~~---a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+..+...+. ...+|||++... +..++..|+..|+. +..+.|++
T Consensus 320 L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~-v~~~hg~l 365 (1176)
T PRK09401 320 LVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGIN-AELAISGF 365 (1176)
T ss_pred HHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCc-EEEEeCcH
Confidence 333444443 357888887655 88999999999994 77788887
No 366
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=26.68 E-value=1.4e+02 Score=22.95 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=22.9
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
++.+++. ++|..+..++..|...|+++|.+++
T Consensus 126 ~k~vlI~-GAGGagrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 126 GKKLTVI-GAGGAATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred CCEEEEE-CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4555555 5566666788889999998788764
No 367
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=26.67 E-value=1.3e+02 Score=22.16 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=26.8
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+.+|+++ +.|.-...++..|...|+.++.++|...
T Consensus 21 ~~~Vliv-G~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVV-GAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 3455555 6777778999999999999888887643
No 368
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=26.63 E-value=1.3e+02 Score=25.38 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=27.6
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+++.|+++++ +|.....++..|++.|-+.|.+..
T Consensus 349 ~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~ 385 (484)
T PRK07272 349 KGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAI 385 (484)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEE
Confidence 4678999887 478888999999999998777543
No 369
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=26.63 E-value=1.3e+02 Score=24.76 Aligned_cols=37 Identities=32% Similarity=0.473 Sum_probs=23.9
Q ss_pred CeEEEEeCCchh-HHHHH----HHHHHCCCcceeEecccHHH
Q 031359 115 DEIIVGCQSGKR-SMMAA----TDLLNAGFAGITDIAGGFAA 151 (161)
Q Consensus 115 ~~ivv~c~~g~~-a~~~~----~~L~~~G~~~v~~l~GG~~~ 151 (161)
+.|++.|+.|+- |+.-+ ..++..|.+++.+.+-.+..
T Consensus 379 ~~iifaCDAGMGSSAMGAsilrkk~k~agl~~I~V~n~AIn~ 420 (472)
T COG2213 379 KKIIFACDAGMGSSAMGASILRKKLKNAGLNDISVTNYAINN 420 (472)
T ss_pred eEEEEEEcCCCChhhhhHHHHHHHHHhCCCCceeEeehhhhc
Confidence 479999998743 33333 45667899877766544433
No 370
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.52 E-value=1.6e+02 Score=17.99 Aligned_cols=14 Identities=14% Similarity=-0.126 Sum_probs=6.2
Q ss_pred HHHHHCCCcceeEec
Q 031359 132 TDLLNAGFAGITDIA 146 (161)
Q Consensus 132 ~~L~~~G~~~v~~l~ 146 (161)
..++...+ ++.+++
T Consensus 37 ~~~~~~~~-d~iiid 50 (112)
T PF00072_consen 37 ELLKKHPP-DLIIID 50 (112)
T ss_dssp HHHHHSTE-SEEEEE
T ss_pred HHhcccCc-eEEEEE
Confidence 44444444 244444
No 371
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=26.50 E-value=1.3e+02 Score=21.68 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+.+|+++ +.|.-...++..|...|+.++.+++...
T Consensus 19 ~s~Vlvi-G~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLII-GAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEE-CCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 3456555 5555777999999999999999888754
No 372
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=26.44 E-value=86 Score=25.42 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=26.6
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.++++|++|..|..+|..|.+. |-++|-.+.+||.+|.
T Consensus 100 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 139 (412)
T TIGR02407 100 KVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMT 139 (412)
T ss_pred eEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCch
Confidence 4667778998888877776553 5445666778887764
No 373
>PRK06936 type III secretion system ATPase; Provisional
Probab=26.13 E-value=2.7e+02 Score=23.11 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCeEEEEeCCch----------hHHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 114 HDEIIVGCQSGK----------RSMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 114 ~~~ivv~c~~g~----------~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
++.++|+..+.. .+..+|.+++..|. +|-++-..+..|..+
T Consensus 217 ~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~-~Vll~~DslTR~A~A 267 (439)
T PRK06936 217 RKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGK-RVLLLMDSVTRFARA 267 (439)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEeccchhHHHHH
Confidence 455666655531 24457788999997 688877788877654
No 374
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=26.07 E-value=1.5e+02 Score=24.18 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=24.6
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--------CCcceeEecccHHHH
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--------GFAGITDIAGGFAAW 152 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--------G~~~v~~l~GG~~~W 152 (161)
.-+++|.+|..+..+|..+... |-.++-.+.||+.++
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~ 150 (427)
T TIGR00508 106 DCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGD 150 (427)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCc
Confidence 4678889988777666655432 234566678888765
No 375
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=26.00 E-value=1.3e+02 Score=23.50 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=25.7
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.++++.+ +|.....++..|++.|-..++.+
T Consensus 207 ~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~ 242 (309)
T PRK01259 207 EGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAY 242 (309)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEE
Confidence 4667888775 57888889999999998877743
No 376
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=25.97 E-value=1.7e+02 Score=20.73 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=22.7
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+++.++++..+|..+..++..|.+.|+ +|.++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~ 59 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVG 59 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEc
Confidence 346677776667777777788888885 566553
No 377
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=25.97 E-value=1.8e+02 Score=23.27 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=17.5
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+.+.|++..+...+ ...+.+||++|..++
T Consensus 119 ~~k~vLv~G~~~vr-----~vAegyGFk~Vvt~D 147 (389)
T KOG1618|consen 119 HYKRVLVVGQGSVR-----EVAEGYGFKNVVTVD 147 (389)
T ss_pred hhceEEEecCCcHH-----HHhhccCccceeeHH
Confidence 34566666443333 355778999887544
No 378
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=25.84 E-value=76 Score=18.75 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=22.2
Q ss_pred CCcccCHHHHHHHHhCC--CEEEEcCChhh
Q 031359 48 VPTSVPVRVAHELLQAG--HRYLDVRTPEE 75 (161)
Q Consensus 48 ~~~~i~~~~~~~~~~~~--~~liDvR~~~e 75 (161)
....++.+++.++..++ +.|+|..+-++
T Consensus 16 ~s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 16 TSSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred CceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 33578899999999876 78999997554
No 379
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=25.81 E-value=1.6e+02 Score=22.36 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=25.6
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
++.++|+ ++|..+..++..|...|+.+|.++.-.
T Consensus 123 ~k~vlVl-GaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILIL-GAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCEEEEE-cCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4455554 678888889999999998788877543
No 380
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=25.62 E-value=1.7e+02 Score=21.92 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=33.9
Q ss_pred CCCCCeEEEEeC---CchhHHHHHHHHHHCCCccee---EecccHHHHhh----CCCCCC
Q 031359 111 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIAGGFAAWRQ----NGLPTE 160 (161)
Q Consensus 111 l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~GG~~~W~~----~g~p~~ 160 (161)
+.+++.|+++++ +|.....+...+++.|-+-+. +++-+..+|.. .|.|+.
T Consensus 173 l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~~~~~l~~~~~vpv~ 232 (238)
T PRK08558 173 LKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEVGIDRAREETDAPVD 232 (238)
T ss_pred cCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCchHHHHHhHhcCCCEE
Confidence 567889999986 678888888999999975322 24434344552 366653
No 381
>PRK08223 hypothetical protein; Validated
Probab=25.56 E-value=1.4e+02 Score=23.19 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=26.8
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+..|+|+ +.|.-...++..|...|+.++.++|...
T Consensus 27 ~s~VlIv-G~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIA-GLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred cCCEEEE-CCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4455555 6666677899999999999998888753
No 382
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=25.56 E-value=1.4e+02 Score=22.35 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=25.5
Q ss_pred CeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 115 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
.+|+++ +.|.-...++..|.+.|+.++.+++..
T Consensus 12 ~~VlVv-G~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 12 AHVAVV-GLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 445554 666777799999999999888888764
No 383
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=25.34 E-value=1.3e+02 Score=24.40 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=24.9
Q ss_pred eEEEEeCCchhHHHHHHHHHH-----CCC----cceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLN-----AGF----AGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~-----~G~----~~v~~l~GG~~~W~ 153 (161)
.-+++|++|..|..+|..|.+ .|. ..|-.+.|||.+|.
T Consensus 99 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t 145 (408)
T PRK04612 99 EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRT 145 (408)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCcc
Confidence 467889999887776665544 242 23556778777664
No 384
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=24.94 E-value=1.9e+02 Score=24.70 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=23.8
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
++.++|+ ++|.....+|..|.++||+ |+.+.
T Consensus 124 ~~svLVI-GGGvAGitAAl~La~~G~~-v~LVE 154 (622)
T COG1148 124 SKSVLVI-GGGVAGITAALELADMGFK-VYLVE 154 (622)
T ss_pred ccceEEE-cCcHHHHHHHHHHHHcCCe-EEEEe
Confidence 4556666 6778888899999999995 76553
No 385
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=24.75 E-value=84 Score=25.57 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=26.0
Q ss_pred eEEEEeCCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 116 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
.++++|++|..|..+|..|.+. |-.++-.+.|||.+|.
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 143 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMT 143 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCcc
Confidence 4566678998888777766543 5445666788887764
No 386
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=24.75 E-value=1.6e+02 Score=23.09 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=24.7
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+++++|+ ++|..+..+|..|...|.++|.++.
T Consensus 172 g~~vvVi-G~G~~g~e~A~~l~~~g~~~Vtvi~ 203 (352)
T PRK12770 172 GKKVVVV-GAGLTAVDAALEAVLLGAEKVYLAY 203 (352)
T ss_pred CCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 5678887 5567788888888888987688764
No 387
>PRK12829 short chain dehydrogenase; Provisional
Probab=24.68 E-value=1.5e+02 Score=21.56 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=24.7
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+++.++|...+|.-...++..|.+.|++ |..+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~ 42 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCD 42 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEe
Confidence 4567888877887778888888888884 65543
No 388
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.48 E-value=1.2e+02 Score=25.20 Aligned_cols=29 Identities=14% Similarity=0.431 Sum_probs=21.5
Q ss_pred EEEEeCCch---hHHHHHHHHHHCCCcceeEe
Q 031359 117 IIVGCQSGK---RSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 117 ivv~c~~g~---~a~~~~~~L~~~G~~~v~~l 145 (161)
|++.|+.|+ ....+++.|...||..+..|
T Consensus 269 V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~ 300 (453)
T KOG2585|consen 269 VAILCGPGNNGGDGLVCGRHLAQHGYTPVIYY 300 (453)
T ss_pred EEEEeCCCCccchhHHHHHHHHHcCceeEEEe
Confidence 888888653 34468899999999765544
No 389
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=24.47 E-value=1.2e+02 Score=23.20 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
++.|+| |+-|.-..+++..|.+-|+.++.+++
T Consensus 30 ~~~V~V-vGiGGVGSw~veALaRsGig~itlID 61 (263)
T COG1179 30 QAHVCV-VGIGGVGSWAVEALARSGIGRITLID 61 (263)
T ss_pred hCcEEE-EecCchhHHHHHHHHHcCCCeEEEEe
Confidence 344444 56665666999999999998877665
No 390
>PLN02335 anthranilate synthase
Probab=24.42 E-value=1.8e+02 Score=21.42 Aligned_cols=33 Identities=12% Similarity=-0.026 Sum_probs=25.1
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
.+.+|++++..+.....++..|++.|++ +.++.
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~-~~v~~ 49 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCH-FEVYR 49 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCc-EEEEE
Confidence 4678888887777778899999999975 55444
No 391
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=24.39 E-value=2e+02 Score=23.70 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHC
Q 031359 101 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 137 (161)
Q Consensus 101 ~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~ 137 (161)
.++.+.+.+.++.+-.++++-++|..|-.++.+|.+.
T Consensus 95 ~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~ 131 (442)
T KOG1404|consen 95 HDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARL 131 (442)
T ss_pred HHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHH
Confidence 3566777788888888899999998888888777653
No 392
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=24.31 E-value=2.8e+02 Score=20.91 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=21.2
Q ss_pred eEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 116 EIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
.|+| ++.|.-...+|..|.+.|++ |.+++
T Consensus 27 DVvI-VGgGpAGl~AA~~la~~G~~-V~liE 55 (257)
T PRK04176 27 DVAI-VGAGPSGLTAAYYLAKAGLK-VAVFE 55 (257)
T ss_pred CEEE-ECccHHHHHHHHHHHhCCCe-EEEEe
Confidence 3444 57777777888899999984 66665
No 393
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=24.28 E-value=2.4e+02 Score=23.45 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=27.5
Q ss_pred CCeEEEEeCCc----------hhHHHHHHHHHHCCCcceeEecccHHHHhhCC
Q 031359 114 HDEIIVGCQSG----------KRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 156 (161)
Q Consensus 114 ~~~ivv~c~~g----------~~a~~~~~~L~~~G~~~v~~l~GG~~~W~~~g 156 (161)
++.|||+..+. ..+..+|..++..|. +|-++-..+..|..+.
T Consensus 213 ~rsvvv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~-~Vll~~DslTr~A~A~ 264 (442)
T PRK08927 213 ARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGK-DVLCLMDSVTRFAMAQ 264 (442)
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC-cEEEEEeCcHHHHhhh
Confidence 45566665543 123457778888997 6887777788776553
No 394
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=24.25 E-value=1.2e+02 Score=24.87 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=27.1
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
...+||++..|.-....+..+++.|| +|++++
T Consensus 70 ~~s~iV~D~KgEl~~~t~~~r~~~G~-~V~vld 101 (469)
T PF02534_consen 70 PGSMIVTDPKGELYEKTAGYRKKRGY-KVYVLD 101 (469)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHCCC-EEEEee
Confidence 34899999999888889999999999 688765
No 395
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=24.11 E-value=2.5e+02 Score=22.73 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=24.2
Q ss_pred eEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 116 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
.=|++|+.|..+..++..|.+.|++ +.+++-
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~ 262 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYS-VKLIER 262 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEC
Confidence 3466688899999999999999984 666643
No 396
>PRK12831 putative oxidoreductase; Provisional
Probab=24.10 E-value=1.5e+02 Score=24.53 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=25.8
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
.++.|+|+ ++|..+..+|..|.+.|.+ |.++.
T Consensus 280 ~gk~VvVI-GgG~va~d~A~~l~r~Ga~-Vtlv~ 311 (464)
T PRK12831 280 VGKKVAVV-GGGNVAMDAARTALRLGAE-VHIVY 311 (464)
T ss_pred CCCeEEEE-CCcHHHHHHHHHHHHcCCE-EEEEe
Confidence 45778887 7778899999999999986 77653
No 397
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=24.10 E-value=1.5e+02 Score=16.96 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=16.3
Q ss_pred eEEEEeCCc-hhHHHHHHHHHHCCCc
Q 031359 116 EIIVGCQSG-KRSMMAATDLLNAGFA 140 (161)
Q Consensus 116 ~ivv~c~~g-~~a~~~~~~L~~~G~~ 140 (161)
.|++|...+ ..+..+...|.+.|++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~ 27 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS 27 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 466776643 5666677777777764
No 398
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=24.08 E-value=1.2e+02 Score=21.62 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=22.9
Q ss_pred EEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 118 IVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 118 vv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
|+.|.....-..+...++..||.++-+++++
T Consensus 75 vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~ 105 (187)
T COG3620 75 VVSVSPDDSISDVVNLMRDKGISQLPVIEED 105 (187)
T ss_pred eeEECchhhHHHHHHHHHHcCCccCceeeCC
Confidence 4456665666688889999999887776643
No 399
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=24.05 E-value=1.5e+02 Score=19.31 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=26.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
.+-.+||.|.....+...+..+.+.|+ .|..+.+-
T Consensus 65 ~~~Dvvf~a~~~~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 65 SDVDVVFLALPHGASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp TTESEEEE-SCHHHHHHHHHHHHHTTS-EEEESSST
T ss_pred hcCCEEEecCchhHHHHHHHHHhhCCc-EEEeCCHH
Confidence 356799999988888899999999998 45545443
No 400
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=24.05 E-value=1.5e+02 Score=24.91 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=26.8
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCcceeEe
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+++.||++.+ +|.+...++..|++.|-+.|++.
T Consensus 359 ~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~ 394 (479)
T PRK09123 359 EGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLR 394 (479)
T ss_pred CCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEE
Confidence 4678888886 48888899999999998877653
No 401
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=24.01 E-value=1.5e+02 Score=25.71 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=20.5
Q ss_pred CCCCeEEEEeCCchhHH-----HHHHHHHHCCCc
Q 031359 112 RKHDEIIVGCQSGKRSM-----MAATDLLNAGFA 140 (161)
Q Consensus 112 ~~~~~ivv~c~~g~~a~-----~~~~~L~~~G~~ 140 (161)
.+..+|++.|++|.-++ .+-+.|++.|++
T Consensus 504 ~k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~ 537 (602)
T PRK09548 504 GKPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIP 537 (602)
T ss_pred CcccEEEEECCCCchHHHHHHHHHHHHHHHcCCC
Confidence 45567999999995433 344477889985
No 402
>PHA03169 hypothetical protein; Provisional
Probab=23.96 E-value=1.1e+02 Score=24.76 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=24.4
Q ss_pred CeEEEEeCCchhHHH--HHHHHHHCCCcceeEecccHHHHhhCCCCC
Q 031359 115 DEIIVGCQSGKRSMM--AATDLLNAGFAGITDIAGGFAAWRQNGLPT 159 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~--~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 159 (161)
--|.|||++-..+.. .++.+.+.-|.....|+-.+-- .+.|+|+
T Consensus 367 y~ItVyCqsk~TaK~V~kaq~~yE~~yp~a~~L~aSl~k-~~~glPi 412 (413)
T PHA03169 367 YCITVFCQSRGTAKAVIKAQKKYEKKYPRSAHLKASLVR-MSRGLPI 412 (413)
T ss_pred eEEEEEecCcccHHHHHHHHHHHHhhCCcchhhhhhhhc-ccCCCCC
Confidence 358999998765543 4445555555544445443322 2345665
No 403
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=23.92 E-value=95 Score=25.51 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=23.4
Q ss_pred CCeEEEEeCCchhHHHHHHHHHH-C-CCc----c--eeEecccHH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLN-A-GFA----G--ITDIAGGFA 150 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~-~-G~~----~--v~~l~GG~~ 150 (161)
+-.-|++|++|..|..+|-.+.+ . +.+ + +-.+.||+.
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyH 159 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYH 159 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcC
Confidence 44568999999888877765543 2 222 3 444666664
No 404
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=23.89 E-value=1.7e+02 Score=24.22 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=24.7
Q ss_pred EEEe-CCchhHHHHHHHHHHC--CCcceeEecccHHHHh
Q 031359 118 IVGC-QSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 153 (161)
Q Consensus 118 vv~c-~~g~~a~~~~~~L~~~--G~~~v~~l~GG~~~W~ 153 (161)
+++| ++|..|..+|..|.+. |-.+|-.+.|||.+|.
T Consensus 129 v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t 167 (464)
T PRK06938 129 IQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMS 167 (464)
T ss_pred EEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCcc
Confidence 4455 7898888777766542 5455666788887774
No 405
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=23.85 E-value=2.8e+02 Score=20.32 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=23.3
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCc---ceeE
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFA---GITD 144 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~---~v~~ 144 (161)
+.+-.++|.++..+..+...|++.|.+ ++.+
T Consensus 178 ~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v 211 (270)
T cd01544 178 NLPTAFFIASDPMAIGALRALQEAGIKVPEDVSV 211 (270)
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 335578888888888888999999974 4554
No 406
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=23.84 E-value=3e+02 Score=20.29 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHCCCcceeEecccHHHH
Q 031359 126 RSMMAATDLLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 126 ~a~~~~~~L~~~G~~~v~~l~GG~~~W 152 (161)
-+...+....++|- .|+.+.|....+
T Consensus 169 Gtl~ta~~A~~~gr-~v~~~pg~~~~~ 194 (220)
T TIGR00732 169 GALITARYALEQGR-EVFAYPGDLNSP 194 (220)
T ss_pred chHHHHHHHHHhCC-cEEEEcCCCCCc
Confidence 34456666677784 688887765543
No 407
>PF11181 YflT: Heat induced stress protein YflT
Probab=23.82 E-value=1.9e+02 Score=18.34 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=4.5
Q ss_pred CeEEEEeCCc
Q 031359 115 DEIIVGCQSG 124 (161)
Q Consensus 115 ~~ivv~c~~g 124 (161)
..|.|+....
T Consensus 27 ddI~Vva~d~ 36 (103)
T PF11181_consen 27 DDIYVVAKDK 36 (103)
T ss_pred ccEEEEEcCc
Confidence 3455554433
No 408
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=23.71 E-value=1.1e+02 Score=21.79 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=38.0
Q ss_pred cCCCCCcE-EeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEeC---CchhHHHHHHHHHHCCCc
Q 031359 78 AGHATGAI-NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ---SGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 78 ~ghIpgA~-nip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~ 140 (161)
.|.+||.+ +..+... ...+.++-....+++++.++++++ +|.....+...+.+.|-+
T Consensus 91 ~gKLPG~~i~~~Y~lE------Yg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~ 151 (183)
T KOG1712|consen 91 PGKLPGEVISESYELE------YGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAE 151 (183)
T ss_pred CCCCCCceeEEEEeee------cCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccE
Confidence 57788853 3443211 122345555566888999999986 577777888888998864
No 409
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=23.60 E-value=1.4e+02 Score=24.10 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=27.1
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+.+|+++ +.|.-...++..|...|+.++.++|...
T Consensus 42 ~~~Vlvi-G~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVI-GAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred cCCEEEE-CCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 3445554 7777778999999999999998888754
No 410
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=23.33 E-value=1.7e+02 Score=23.66 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=21.7
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
.+.++++.+.+|..|..+++.+.+.|++
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G~~ 202 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRGVE 202 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCCCE
Confidence 4556777778888888888888888874
No 411
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=23.20 E-value=1.8e+02 Score=23.37 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=20.7
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
.+.++++...+|..|..+++.+.+.|++
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~~ 198 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGCR 198 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCCe
Confidence 3456666667788888888888888874
No 412
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=23.19 E-value=1.9e+02 Score=23.20 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=22.7
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
++-||++ +.|.-..+++.+|.+-|..++.+++
T Consensus 74 ~syVVVV-G~GgVGSwv~nmL~RSG~qKi~iVD 105 (430)
T KOG2018|consen 74 NSYVVVV-GAGGVGSWVANMLLRSGVQKIRIVD 105 (430)
T ss_pred CcEEEEE-ecCchhHHHHHHHHHhcCceEEEec
Confidence 4555555 4444555899999999998887664
No 413
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=23.16 E-value=1.8e+02 Score=23.73 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=26.2
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHC---------CC-----cceeEecccHHHHh
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNA---------GF-----AGITDIAGGFAAWR 153 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~---------G~-----~~v~~l~GG~~~W~ 153 (161)
+-.-+++|++|..|..+|..|.+. |. ++|-.+.|+|.+|.
T Consensus 102 ~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t 155 (431)
T TIGR03251 102 ALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRS 155 (431)
T ss_pred CcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcc
Confidence 334688999998887777766531 32 34556778777664
No 414
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=22.96 E-value=2.8e+02 Score=19.64 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEe
Q 031359 101 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 101 ~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
...++.....+.++-.++++...-.....+...|++.|+ ++.++
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~ 168 (198)
T PRK00377 125 KEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEIT 168 (198)
T ss_pred HHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEE
Confidence 355666666677777777654444556678888999998 44433
No 415
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=22.78 E-value=2.3e+02 Score=19.61 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=19.3
Q ss_pred CCCeEEEEeCCc---------hhHHHHHHHHHHCCCcc
Q 031359 113 KHDEIIVGCQSG---------KRSMMAATDLLNAGFAG 141 (161)
Q Consensus 113 ~~~~ivv~c~~g---------~~a~~~~~~L~~~G~~~ 141 (161)
+++.+||+|+.+ ..-......|...||..
T Consensus 14 ~Ek~vvVv~~~~~~~~~~l~~~s~~~l~~eL~~~GYSy 51 (146)
T PF04763_consen 14 KEKNVVVVCNHSWPGPESLPPESVSLLIEELEESGYSY 51 (146)
T ss_pred ccCcEEEEEeCCcccccCCChHHHHHHHHHHhhcCCce
Confidence 467788888754 22335666788889863
No 416
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=22.70 E-value=2.3e+02 Score=19.37 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
.++.|+++..+......++.+|.+.|.. |...+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gat-V~~~~ 59 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGAT-VYSCD 59 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeC
Confidence 4788999988888888999999998874 65554
No 417
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=22.69 E-value=1.3e+02 Score=27.23 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=28.8
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
....++|+|++-.++..++..|+..|+ ..|.|.+.
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~---~lLHG~m~ 305 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF---ELLTGTLR 305 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC---eEeeCCCC
Confidence 346789999999999999999999887 46777764
No 418
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=22.64 E-value=2.1e+02 Score=20.12 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCC-Cccee
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAG-FAGIT 143 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G-~~~v~ 143 (161)
.++.|+++.+ +|.....++..|++.| -..++
T Consensus 94 ~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~ 128 (176)
T PRK05205 94 EGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQ 128 (176)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEE
Confidence 4677888875 6888889999999998 44454
No 419
>PRK07814 short chain dehydrogenase; Provisional
Probab=22.63 E-value=1.9e+02 Score=21.34 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=12.2
Q ss_pred CeEEEEeCCchhHHHHHHHHHHCCC
Q 031359 115 DEIIVGCQSGKRSMMAATDLLNAGF 139 (161)
Q Consensus 115 ~~ivv~c~~g~~a~~~~~~L~~~G~ 139 (161)
+.+++...+|.-....+..|.+.|+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~ 35 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGA 35 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC
Confidence 3444444444444445555555555
No 420
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=22.59 E-value=1.9e+02 Score=25.02 Aligned_cols=28 Identities=14% Similarity=0.409 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCcceeEecccHHHHhhC
Q 031359 127 SMMAATDLLNAGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 127 a~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 155 (161)
+..+|.+++.+|+ +|..+.....-|..+
T Consensus 313 g~tiAEYfRD~G~-~Vll~~DS~tR~AeA 340 (591)
T TIGR01042 313 GITLAEYFRDMGY-NVSMMADSTSRWAEA 340 (591)
T ss_pred HHHHHHHHHhcCC-CEEEEecChHHHHHH
Confidence 3356778999998 688888889888754
No 421
>PRK07411 hypothetical protein; Validated
Probab=22.39 E-value=1.7e+02 Score=23.66 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=27.2
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+..|+++ +.|.-...++..|...|+.++.++|+..
T Consensus 38 ~~~Vliv-G~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 38 AASVLCI-GTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred cCcEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 3445555 6677777999999999999998888754
No 422
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=22.39 E-value=90 Score=27.18 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=29.9
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 152 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~W 152 (161)
++++|||. ++..++...|..|...|++ +.-|++|+...
T Consensus 440 rGQtIVFT-~SRrr~h~lA~~L~~kG~~-a~pYHaGL~y~ 477 (830)
T COG1202 440 RGQTIVFT-YSRRRCHELADALTGKGLK-AAPYHAGLPYK 477 (830)
T ss_pred CCceEEEe-cchhhHHHHHHHhhcCCcc-cccccCCCcHH
Confidence 45666664 8888999999999999995 77788887543
No 423
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=22.38 E-value=1.7e+02 Score=16.85 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=14.9
Q ss_pred eEEEEeCCc-hhHHHHHHHHHHCCCc
Q 031359 116 EIIVGCQSG-KRSMMAATDLLNAGFA 140 (161)
Q Consensus 116 ~ivv~c~~g-~~a~~~~~~L~~~G~~ 140 (161)
.|++|+..+ ..+..+...|.+.|++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~ 27 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLP 27 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCc
Confidence 456666543 4555666667777764
No 424
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=22.37 E-value=59 Score=21.77 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=28.4
Q ss_pred CHHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 100 NLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 100 ~~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+.+++..+.....++..+..||..+ .+-..|.+.||. |.-..|
T Consensus 69 s~e~~~~l~~~~~~~~~l~Tys~a~----~Vr~~L~~aGF~-v~~~~g 111 (124)
T PF05430_consen 69 SEELFKKLARLSKPGGTLATYSSAG----AVRRALQQAGFE-VEKVPG 111 (124)
T ss_dssp SHHHHHHHHHHEEEEEEEEES--BH----HHHHHHHHCTEE-EEEEE-
T ss_pred CHHHHHHHHHHhCCCcEEEEeechH----HHHHHHHHcCCE-EEEcCC
Confidence 3467777777677777788887653 466789999995 665544
No 425
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=22.34 E-value=1.9e+02 Score=22.98 Aligned_cols=33 Identities=18% Similarity=0.089 Sum_probs=26.7
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
.+++|+|...+|.-...++..|.+.||+ |..++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~-V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHY-IIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCE-EEEEE
Confidence 5677888888899899999999999984 66553
No 426
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=22.25 E-value=2e+02 Score=20.62 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=31.4
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHHH
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 151 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~~ 151 (161)
++..++++...+.++.-.-...+.+|.+|+.++.+=...
T Consensus 71 p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 71 PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 567789988888998888888899999999998886665
No 427
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=22.23 E-value=1.8e+02 Score=23.18 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHC-CCcceeEeccc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNA-GFAGITDIAGG 148 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~-G~~~v~~l~GG 148 (161)
...|+|+ +.|.....+|..|.+. |+.+|.+++.+
T Consensus 30 ~~dvvII-GgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 30 TYDVIIV-GGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred cCCEEEE-CCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 3456655 7777777888888874 97678888754
No 428
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=22.16 E-value=1.8e+02 Score=21.28 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=26.2
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
+.+|+++ +.|.-...++..|...|+.++.++|..
T Consensus 28 ~~~V~Vi-G~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIA-GAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEE-CcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3455555 667777799999999999888888775
No 429
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=22.16 E-value=1.9e+02 Score=20.92 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=31.5
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCccee---Eec-ccHHHHhhCCCCCC
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA-GGFAAWRQNGLPTE 160 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~-GG~~~W~~~g~p~~ 160 (161)
+++.|+++.+ +|.....+...|++.|-+.+. +++ +|.. ...|.|+.
T Consensus 139 ~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~g~~--~~~~vpv~ 191 (200)
T PRK02277 139 EGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKSGID--EIDGVPVY 191 (200)
T ss_pred CcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECcchh--hhcCCCeE
Confidence 5788988886 588888999999999976544 233 3433 23466653
No 430
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=22.13 E-value=1.6e+02 Score=23.57 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=25.5
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
+.+++.|++. ..|..+.+++..++++|+ +|.++.
T Consensus 89 lePgd~vLv~-~~G~wg~ra~D~~~r~ga-~V~~v~ 122 (385)
T KOG2862|consen 89 LEPGDNVLVV-STGTWGQRAADCARRYGA-EVDVVE 122 (385)
T ss_pred cCCCCeEEEE-EechHHHHHHHHHHhhCc-eeeEEe
Confidence 4466666555 678899999999999998 466554
No 431
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=22.03 E-value=2.5e+02 Score=22.05 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 104 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 104 ~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
+...+.++.....+|+.|..+..+..+...++++|+.
T Consensus 184 ~~~~l~~i~~~~~vii~~~~~~~~~~~l~q~~~~g~~ 220 (389)
T cd06352 184 LLEILQDIKRRSRIIIMCGSSEDVRELLLAAHDLGLT 220 (389)
T ss_pred HHHHHHHhhhcceEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3444444433337888888877777888899999985
No 432
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=22.02 E-value=3.2e+02 Score=19.93 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=26.2
Q ss_pred HHHHHHHhcC---CCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccHH
Q 031359 102 KFVEEVSTRF---RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 150 (161)
Q Consensus 102 ~~~~~~~~~l---~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~~ 150 (161)
..+......+ +..+.+++-|+.|..+.. |.+.|++ |.-++-.-.
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~----LA~~G~~-V~gvD~S~~ 67 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAW----LAEQGHR-VLGVELSEI 67 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHHH----HHhCCCe-EEEEeCCHH
Confidence 3455554444 334667888888765543 4467884 776665443
No 433
>PRK07402 precorrin-6B methylase; Provisional
Probab=22.01 E-value=2.9e+02 Score=19.47 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEe
Q 031359 101 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 101 ~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
...+......+.++-.+++++.+-.....+...++..+..+..++
T Consensus 122 ~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (196)
T PRK07402 122 KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVV 166 (196)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEE
Confidence 356677777788887787776654444445555665544333333
No 434
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=22.01 E-value=2e+02 Score=20.99 Aligned_cols=31 Identities=19% Similarity=0.062 Sum_probs=18.6
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEe
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
++.++|...+|.-...++..|.+.|++ |..+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~ 40 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAE-VILN 40 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCE-EEEE
Confidence 455666655666666666667667763 5443
No 435
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=22.00 E-value=79 Score=20.01 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=14.6
Q ss_pred HHHHHHHHCCCcceeEec
Q 031359 129 MAATDLLNAGFAGITDIA 146 (161)
Q Consensus 129 ~~~~~L~~~G~~~v~~l~ 146 (161)
.|.+.|-+.||++|.++.
T Consensus 61 DALwaLlRr~YDrVSlMR 78 (95)
T PF05586_consen 61 DALWALLRRQYDRVSLMR 78 (95)
T ss_pred HHHHHHHHhccceeeeec
Confidence 567788889999998764
No 436
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=21.93 E-value=1.8e+02 Score=23.91 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
.++.|+|+ +.|..+..+|..|.+.|.+ |.++.
T Consensus 271 ~gk~VvVI-GgG~~a~d~A~~l~~~G~~-Vtlv~ 302 (449)
T TIGR01316 271 AGKSVVVI-GGGNTAVDSARTALRLGAE-VHCLY 302 (449)
T ss_pred CCCeEEEE-CCCHHHHHHHHHHHHcCCE-EEEEe
Confidence 45678877 6778899999999999986 77654
No 437
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=21.92 E-value=2.5e+02 Score=22.18 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 101 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 101 ~~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
.++...+...+..+..+|+.|.....+..+...+++.|..
T Consensus 183 ~d~~~~~l~~~~~~~~vii~~~~~~~~~~i~~~a~~~g~~ 222 (391)
T cd06372 183 PDLLQEKLRYISSVARVIILICSSEDAKAILQAAEKLGLM 222 (391)
T ss_pred hHHHHHHHHhhhccceEEEEEcChHHHHHHHHHHHHcCCC
Confidence 3455555555555667777777777777788888898874
No 438
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=21.88 E-value=2.6e+02 Score=18.88 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=25.4
Q ss_pred CCCCeEEEEeCCc---hhHHHHHHHHHHCCCcceeEec
Q 031359 112 RKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 112 ~~~~~ivv~c~~g---~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
.++.+|++.++.. ..-..+...+++.|+.+|.+..
T Consensus 97 ~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 97 KKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3567788887765 3445677788999999887654
No 439
>PRK09492 treR trehalose repressor; Provisional
Probab=21.86 E-value=1.4e+02 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=24.4
Q ss_pred eEEEEeCCchhHHHHHHHHHHCCCcceeEe
Q 031359 116 EIIVGCQSGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+-.++|.+...+..+...|++.|++++.++
T Consensus 233 ~~ai~~~~D~~A~g~~~al~~~g~~disvi 262 (315)
T PRK09492 233 TTALVCATDTLALGASKYLQEQGRDDIQVA 262 (315)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCceEEE
Confidence 446678888888889999999999887754
No 440
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=21.74 E-value=1.6e+02 Score=24.29 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+++.|+|+ ++|..+..++..|...| .+|..+..
T Consensus 174 ~GKrV~VI-G~GaSA~di~~~l~~~g-a~vt~~qR 206 (443)
T COG2072 174 RGKRVLVI-GAGASAVDIAPELAEVG-ASVTLSQR 206 (443)
T ss_pred CCCeEEEE-CCCccHHHHHHHHHhcC-CeeEEEec
Confidence 46778877 78889999999999998 67776654
No 441
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.70 E-value=2.9e+02 Score=19.20 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=28.1
Q ss_pred CHHHHHHHHhcCCCCCeEEEEeCCc--hhHHHHHHHHHHCCCcceeEecc
Q 031359 100 NLKFVEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 100 ~~~~~~~~~~~l~~~~~ivv~c~~g--~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+.+.+++..+.+...+.|+++..++ ..+..++..|...|. ++..+..
T Consensus 16 ~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~-~~~~~~~ 64 (179)
T TIGR03127 16 DEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGF-NVYVVGE 64 (179)
T ss_pred CHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCC-eEEEeCC
Confidence 3455666666665667777775432 344556667777887 4554433
No 442
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=21.70 E-value=2.5e+02 Score=18.48 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=23.9
Q ss_pred CCCCeEEEEeCCc---hhHHHHHHHHHHCCCcceeEe
Q 031359 112 RKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 112 ~~~~~ivv~c~~g---~~a~~~~~~L~~~G~~~v~~l 145 (161)
.++..+++-++.. ..-..+...+++.|+.++.+.
T Consensus 91 ~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l~ 127 (129)
T TIGR02801 91 NPDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGLI 127 (129)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 3456788877765 344467778899999988753
No 443
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=21.66 E-value=2.1e+02 Score=20.60 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=24.8
Q ss_pred CCCeEEEEeC---CchhHHHHHHHHHHCCCccee
Q 031359 113 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 143 (161)
Q Consensus 113 ~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~ 143 (161)
+++.|+++.+ +|.....+...|+..|...++
T Consensus 96 ~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~ 129 (189)
T PLN02238 96 KGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVS 129 (189)
T ss_pred CCCEEEEEecccchHHHHHHHHHHHHhCCCCEEE
Confidence 5788888876 577777888999999987655
No 444
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=21.60 E-value=1.6e+02 Score=23.19 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCchhHHHHHHHHHH--------CCCcceeEecccHHHH
Q 031359 102 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN--------AGFAGITDIAGGFAAW 152 (161)
Q Consensus 102 ~~~~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~--------~G~~~v~~l~GG~~~W 152 (161)
++.+.+.+.++..-.-+++|.+|..|..+|..+.. -|-.+|-...|++.++
T Consensus 63 ~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~ 121 (339)
T PF00202_consen 63 ELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGR 121 (339)
T ss_dssp HHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TS
T ss_pred hhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeecc
Confidence 34444555565566678889999888777776655 2444566667777643
No 445
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=21.56 E-value=1.8e+02 Score=17.81 Aligned_cols=10 Identities=40% Similarity=0.401 Sum_probs=5.5
Q ss_pred HHHHHHCCCc
Q 031359 131 ATDLLNAGFA 140 (161)
Q Consensus 131 ~~~L~~~G~~ 140 (161)
+..|++.|++
T Consensus 23 a~~L~~~Gi~ 32 (90)
T smart00851 23 AKFLREAGLP 32 (90)
T ss_pred HHHHHHCCCc
Confidence 3455666653
No 446
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=21.51 E-value=1.9e+02 Score=23.55 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=26.4
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEeccc
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 148 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG 148 (161)
.++.++|+ +.|..+..++..|...|+.+|.+++-.
T Consensus 179 ~~~~VlVi-GaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 179 KGKKALLI-GAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred cCCEEEEE-CChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 34566666 678888889999999998778776543
No 447
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=21.47 E-value=3.3e+02 Score=19.76 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=28.6
Q ss_pred HHHhcCCCCCeEEEEeCCchh--HHHHHHHHHHCCCcceeEecc
Q 031359 106 EVSTRFRKHDEIIVGCQSGKR--SMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 106 ~~~~~l~~~~~ivv~c~~g~~--a~~~~~~L~~~G~~~v~~l~G 147 (161)
++....++++-+++++.+|.. -..++..+++.|.+ +-.+.|
T Consensus 102 ql~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~-vI~IT~ 144 (196)
T PRK10886 102 QVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMT-IVALTG 144 (196)
T ss_pred HHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 334446778888889888743 44688899999985 545554
No 448
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=21.45 E-value=2.2e+02 Score=20.65 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=8.9
Q ss_pred eEEEEeCCchhHHHHHHHHHHCC
Q 031359 116 EIIVGCQSGKRSMMAATDLLNAG 138 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~G 138 (161)
.|++++.+..........+...+
T Consensus 38 ~Vi~~~r~~~~~~~~~~~l~~~~ 60 (247)
T PRK08945 38 TVILLGRTEEKLEAVYDEIEAAG 60 (247)
T ss_pred cEEEEeCCHHHHHHHHHHHHhcC
Confidence 44444443333333333444433
No 449
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=21.42 E-value=2.3e+02 Score=20.62 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=24.9
Q ss_pred HHHHHhcC-CCCCeEEEEeCCchhHHHHHHHHHHCCC
Q 031359 104 VEEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGF 139 (161)
Q Consensus 104 ~~~~~~~l-~~~~~ivv~c~~g~~a~~~~~~L~~~G~ 139 (161)
+......+ ..+..||+.|..+..+..+...+.+.|.
T Consensus 184 ~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~ 220 (298)
T cd06269 184 IRRLLKELKSSTARVIVVFSSEEDALRLLEEAVELGM 220 (298)
T ss_pred HHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHcCC
Confidence 34343433 2334788888887788888888899887
No 450
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=21.40 E-value=1.6e+02 Score=25.67 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=22.4
Q ss_pred CCeEEEEeCCchhHH-----HHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSM-----MAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~-----~~~~~L~~~G~~~v~~l~ 146 (161)
.+.++++|++|..+. ..-..|++.|.+++.+.+
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~~~i~~i~i~~ 415 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTN 415 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHHcCCCeeEEEE
Confidence 467999999986554 455677777766555443
No 451
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=21.29 E-value=3.3e+02 Score=19.82 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=25.7
Q ss_pred cCCCCCeEEEEeCCchhHHHHHHHHHHCCCc-ceeEecccHH
Q 031359 110 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAGGFA 150 (161)
Q Consensus 110 ~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~-~v~~l~GG~~ 150 (161)
.++++..|+.+-....++..+-..+++.|+. +|.++.|-..
T Consensus 66 ~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 66 ALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp TSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred hhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 4555666666666666666666777777774 5666666443
No 452
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=21.17 E-value=1.9e+02 Score=25.07 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=24.5
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
++.|+|+ ++|.-...+|..|.+.|++ |.+++
T Consensus 327 ~~~VaII-GaGpAGLsaA~~L~~~G~~-V~V~E 357 (654)
T PRK12769 327 DKRVAII-GAGPAGLACADVLARNGVA-VTVYD 357 (654)
T ss_pred CCEEEEE-CCCHHHHHHHHHHHHCCCe-EEEEe
Confidence 4667777 7777777899999999985 77765
No 453
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=21.11 E-value=1.9e+02 Score=21.71 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=18.5
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
.+.++|...+|..|..++..+.+.|++
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~g~~ 38 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDAGTE 38 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHhCCC
Confidence 345666666777777777777777764
No 454
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=21.06 E-value=2.4e+02 Score=20.54 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=23.2
Q ss_pred CCeEEEEe---CCchhHHHHHHHHHHCCC--cceeE
Q 031359 114 HDEIIVGC---QSGKRSMMAATDLLNAGF--AGITD 144 (161)
Q Consensus 114 ~~~ivv~c---~~g~~a~~~~~~L~~~G~--~~v~~ 144 (161)
++.|++.+ .+|.....+...|++.|. +++.+
T Consensus 121 ~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~ 156 (207)
T PF14681_consen 121 NRKVILLDPMLATGGSAIAAIEILKEHGVPEENIII 156 (207)
T ss_dssp TSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEE
T ss_pred CCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEE
Confidence 46677765 478899999999999987 45553
No 455
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=21.04 E-value=2.2e+02 Score=20.09 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=22.8
Q ss_pred CCCeEEEEeCCch-hHHHHHHHHHHCCCcceeEecc
Q 031359 113 KHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 113 ~~~~ivv~c~~g~-~a~~~~~~L~~~G~~~v~~l~G 147 (161)
.++.++|+ +.|. -...++..|.+.|. +|.+.+-
T Consensus 43 ~gk~vlVi-G~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 43 AGKKVVVV-GRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCEEEEE-CCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 35667766 5554 46669999999998 5776553
No 456
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=21.03 E-value=4.4e+02 Score=22.11 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=21.3
Q ss_pred HHHHHHHHHH-CCCcceeEecccHHHHhhC
Q 031359 127 SMMAATDLLN-AGFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 127 a~~~~~~L~~-~G~~~v~~l~GG~~~W~~~ 155 (161)
+..+|..++. .|. ||-++-..+..|..+
T Consensus 225 a~tiAEyfrd~~G~-~VLll~DslTR~A~A 253 (463)
T PRK09280 225 GLTMAEYFRDVEGQ-DVLLFIDNIFRFTQA 253 (463)
T ss_pred HHHHHHHHHHhcCC-ceEEEecchHHHHHH
Confidence 4457778888 997 688777888888654
No 457
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.95 E-value=1.8e+02 Score=16.62 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=24.8
Q ss_pred HHHHhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCc
Q 031359 105 EEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 140 (161)
Q Consensus 105 ~~~~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~ 140 (161)
...+ .+..+..+.|..+.......+..+++..||+
T Consensus 17 k~al-~~~~g~~l~v~~d~~~s~~~i~~~~~~~G~~ 51 (67)
T cd03421 17 KKAL-ELEAGGEIEVLVDNEVAKENVSRFAESRGYE 51 (67)
T ss_pred HHHH-hcCCCCEEEEEEcChhHHHHHHHHHHHcCCE
Confidence 3344 5666677777767655556788899999996
No 458
>PRK06523 short chain dehydrogenase; Provisional
Probab=20.86 E-value=2e+02 Score=21.03 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=21.5
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEe
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
++.++|...++.-...++..|.+.|++ |..+
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~ 39 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGAR-VVTT 39 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCE-EEEE
Confidence 456777666676777788888888874 5443
No 459
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=20.84 E-value=2e+02 Score=25.00 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=27.1
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
...++.|||+ ++|..+..+|..|.+.|.++|.++.
T Consensus 320 ~~~gk~VvVI-GgG~~a~e~A~~l~~~Ga~~Vtlv~ 354 (652)
T PRK12814 320 LHPGKKVVVI-GGGNTAIDAARTALRLGAESVTILY 354 (652)
T ss_pred ccCCCeEEEE-CCCHHHHHHHHHHHHcCCCeEEEee
Confidence 3456778887 6778888899999999987787654
No 460
>PRK11024 colicin uptake protein TolR; Provisional
Probab=20.67 E-value=2.8e+02 Score=18.71 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=24.0
Q ss_pred CCCCeEEEEeCCc---hhHHHHHHHHHHCCCcceeEe
Q 031359 112 RKHDEIIVGCQSG---KRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 112 ~~~~~ivv~c~~g---~~a~~~~~~L~~~G~~~v~~l 145 (161)
.++..|++.++.. .+-..+...+++.|+.++.+.
T Consensus 101 ~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~ 137 (141)
T PRK11024 101 NPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLM 137 (141)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 3466777777654 344567778899999988754
No 461
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=20.64 E-value=85 Score=25.69 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=28.3
Q ss_pred CCCeEEEEeCCch----------hHHHHHHHHHHCCCcceeEecccHHHHh
Q 031359 113 KHDEIIVGCQSGK----------RSMMAATDLLNAGFAGITDIAGGFAAWR 153 (161)
Q Consensus 113 ~~~~ivv~c~~g~----------~a~~~~~~L~~~G~~~v~~l~GG~~~W~ 153 (161)
.++++.+||+-.- -....+..|+..|++ +.++-||+.++.
T Consensus 30 ~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~-~~~ligd~ta~i 79 (410)
T PRK13354 30 EGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHR-PVILIGGFTGKI 79 (410)
T ss_pred cCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCe-EEEEEccccccc
Confidence 4678899987431 224566678889985 888889888764
No 462
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=20.63 E-value=1.5e+02 Score=20.39 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=19.2
Q ss_pred CCCCCeEEEEeCCchhHHHHHHHHHH
Q 031359 111 FRKHDEIIVGCQSGKRSMMAATDLLN 136 (161)
Q Consensus 111 l~~~~~ivv~c~~g~~a~~~~~~L~~ 136 (161)
+..+++|+++|.+...+..+...|.+
T Consensus 119 iAGdDTilii~~~~~~a~~~~~~l~~ 144 (146)
T TIGR01529 119 IAGDDTILVICRDPETAELLMERLLE 144 (146)
T ss_pred EecCCEEEEEECCHHHHHHHHHHHHH
Confidence 34677888888888777777776654
No 463
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=20.42 E-value=3e+02 Score=20.21 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=32.8
Q ss_pred CCCCeEEEEeC---CchhHHHHHHHHHHCCCccee---Eec---ccHHHHhhCCCCC
Q 031359 112 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPT 159 (161)
Q Consensus 112 ~~~~~ivv~c~---~g~~a~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~p~ 159 (161)
.++++|+++.+ +|.....++..+++.|.+-+. +++ |+-....+.|.++
T Consensus 110 ~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~~~~~~~~~~~g~~~ 166 (201)
T COG0461 110 VKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQSGAKEVLKEYGVKL 166 (201)
T ss_pred CCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecchhHHHHHHhcCCce
Confidence 46777888775 578888999999999985322 233 4445556667665
No 464
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=20.40 E-value=4.1e+02 Score=20.51 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=18.9
Q ss_pred HHHHHHHHHHC-CCcceeEecccHHHHhhC
Q 031359 127 SMMAATDLLNA-GFAGITDIAGGFAAWRQN 155 (161)
Q Consensus 127 a~~~~~~L~~~-G~~~v~~l~GG~~~W~~~ 155 (161)
+...|..++.. |. +|-++-..+..|..+
T Consensus 150 a~~~AEyfr~~~g~-~Vl~~~Dsltr~a~A 178 (274)
T cd01133 150 GLTMAEYFRDEEGQ-DVLLFIDNIFRFTQA 178 (274)
T ss_pred HHHHHHHHHHhcCC-eEEEEEeChhHHHHH
Confidence 34566778777 86 577666678777554
No 465
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=20.40 E-value=1.8e+02 Score=23.41 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=27.2
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+..|+++ +.|.-...++..|...|+.++.+++...
T Consensus 41 ~~~Vlii-G~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVI-GAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred CCcEEEE-CCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3445444 7777788999999999999998888763
No 466
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=20.35 E-value=2.5e+02 Score=20.41 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=21.3
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecc
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 147 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~G 147 (161)
+++++|+ ++|.-+.+.+..|.+.|. +|.++..
T Consensus 9 gk~vlVv-GgG~va~rk~~~Ll~~ga-~VtVvsp 40 (205)
T TIGR01470 9 GRAVLVV-GGGDVALRKARLLLKAGA-QLRVIAE 40 (205)
T ss_pred CCeEEEE-CcCHHHHHHHHHHHHCCC-EEEEEcC
Confidence 4556555 666777777788888885 4666643
No 467
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=20.32 E-value=1.7e+02 Score=22.22 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=24.6
Q ss_pred eEEEEeCCchhHHHHHHHHHHCCCcceeEe
Q 031359 116 EIIVGCQSGKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 116 ~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l 145 (161)
+-.++|.+...+..+...|++.|.+++.++
T Consensus 230 ~tAi~~~~D~~A~g~~~~l~~~g~~dvsvv 259 (311)
T TIGR02405 230 TTALVCATDTLALGAAKYLQELDRSDVQVS 259 (311)
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCCCeEEE
Confidence 346678888888899999999999888764
No 468
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=20.32 E-value=3.5e+02 Score=21.37 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=26.0
Q ss_pred hcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 109 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 109 ~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
..+...++++|+ ++|..+..+|..|.+.|. +|.++.
T Consensus 136 ~~~~~~~~vvVi-GgG~~g~e~A~~L~~~g~-~Vtlv~ 171 (377)
T PRK04965 136 TQLRDAQRVLVV-GGGLIGTELAMDLCRAGK-AVTLVD 171 (377)
T ss_pred HHhhcCCeEEEE-CCCHHHHHHHHHHHhcCC-eEEEEe
Confidence 334456677776 677788889999999997 476664
No 469
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=20.28 E-value=2e+02 Score=26.45 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=25.3
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
.+++|+|+ ++|.-...+|..|.+.||+ |.+++
T Consensus 305 ~gkkVaVI-GsGPAGLsaA~~Lar~G~~-VtVfE 336 (944)
T PRK12779 305 VKPPIAVV-GSGPSGLINAYLLAVEGFP-VTVFE 336 (944)
T ss_pred CCCeEEEE-CCCHHHHHHHHHHHHCCCe-EEEEe
Confidence 46778777 7777777889999999994 77765
No 470
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=20.27 E-value=1.5e+02 Score=16.53 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHCCCcceeEe
Q 031359 124 GKRSMMAATDLLNAGFAGITDI 145 (161)
Q Consensus 124 g~~a~~~~~~L~~~G~~~v~~l 145 (161)
...+..++.+|+.+|+. +++.
T Consensus 10 ~~~a~l~~~llr~~GIp-ar~v 30 (68)
T smart00460 10 GEFAALFVALLRSLGIP-ARVV 30 (68)
T ss_pred HHHHHHHHHHHHHCCCC-eEEE
Confidence 35777788899999996 4433
No 471
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=20.26 E-value=1.7e+02 Score=18.35 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=16.9
Q ss_pred EEEEeCCch----hHHHHHHHHHHCCCcc
Q 031359 117 IIVGCQSGK----RSMMAATDLLNAGFAG 141 (161)
Q Consensus 117 ivv~c~~g~----~a~~~~~~L~~~G~~~ 141 (161)
+|+|+=+.. +..+++..|+..|+..
T Consensus 4 lV~YDI~~~~~~k~r~kv~k~L~~~G~~r 32 (95)
T TIGR01573 4 LVVYDIPTDGERKRRRKLRKLLEKYGLQR 32 (95)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHcchhh
Confidence 566654433 6668888888888544
No 472
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=20.23 E-value=2e+02 Score=25.52 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=33.9
Q ss_pred HhcCCCCCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 108 STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 108 ~~~l~~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
...++.+..|.++|++=.+|..+...|+..+. +++.+.+=+
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf 474 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRF 474 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEeccc
Confidence 33456788999999999999999999999997 688777644
No 473
>PLN02206 UDP-glucuronate decarboxylase
Probab=20.08 E-value=2e+02 Score=23.61 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=27.3
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHHCCCcceeEec
Q 031359 113 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 146 (161)
Q Consensus 113 ~~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~ 146 (161)
++.+|+|...+|.-...++..|.+.|++ |..++
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEe
Confidence 5678888888999888999999999985 76654
No 474
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=20.01 E-value=1.7e+02 Score=23.19 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=27.0
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHCCCcceeEecccH
Q 031359 114 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 149 (161)
Q Consensus 114 ~~~ivv~c~~g~~a~~~~~~L~~~G~~~v~~l~GG~ 149 (161)
+..|+++ +.|.-...++..|...|+.++.+++...
T Consensus 24 ~~~VlVv-G~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLII-GAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 3445555 6677777899999999998899888764
Done!