BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031361
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HZ6|A Chain A, The Crystal Structure Of Human Ire1-Alpha Luminal Domain
          Length = 369

 Score = 34.7 bits (78), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 27  PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFH 86
           PE+  L  V+TL+G++H V  + G  +W+      +       +P F  D  +       
Sbjct: 8   PET--LLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLG 65

Query: 87  RKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSG 133
            K    + K    + E ++  P    DG L +G ++   + +D  +G
Sbjct: 66  SKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTG 112


>pdb|4AAH|A Chain A, Methanol Dehydrogenase From Methylophilus W3a1
 pdb|4AAH|C Chain C, Methanol Dehydrogenase From Methylophilus W3a1
 pdb|2AD6|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C)
 pdb|2AD6|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C)
 pdb|2AD7|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C) In The Presence Of Methanol
 pdb|2AD7|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C) In The Presence Of Methanol
 pdb|2AD8|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C) In The Presence Of Ethanol
 pdb|2AD8|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C) In The Presence Of Ethanol
          Length = 571

 Score = 29.3 bits (64), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 30  GDLALVATLNGTVHLVDTKRGESRWSFSM-----GKPIYSSF 66
           G L   ATL+G +  +D K G+  W+F M     G P+  SF
Sbjct: 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF 516


>pdb|1G72|A Chain A, Catalytic Mechanism Of Quinoprotein Methanol
           Dehydrogenase: A Theoretical And X-Ray Crystallographic
           Investigation
 pdb|1G72|C Chain C, Catalytic Mechanism Of Quinoprotein Methanol
           Dehydrogenase: A Theoretical And X-Ray Crystallographic
           Investigation
          Length = 573

 Score = 29.3 bits (64), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 30  GDLALVATLNGTVHLVDTKRGESRWSFSM-----GKPIYSSF 66
           G L   ATL+G +  +D K G+  W+F M     G P+  SF
Sbjct: 477 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF 518


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,569,978
Number of Sequences: 62578
Number of extensions: 191136
Number of successful extensions: 359
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 8
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)