BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031361
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z2E3|ERN2_MOUSE Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Mus
musculus GN=Ern2 PE=2 SV=2
Length = 911
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 5 LIFLLLLTVILSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS 64
L FLL L +L L P PES L V+TL+G++H ++ + G+ +W+ I
Sbjct: 14 LGFLLQLVTLLGKLGPQVQSVRPES--LLFVSTLDGSLHALNKQTGDLKWTVKDDPIIQG 71
Query: 65 SFTRNDPDFYVDVGEDWKLYF--HRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEK 122
+ F D D LY +K G MK P + E + P DG G ++
Sbjct: 72 PMYVTEMAFLSDPA-DGSLYVLGTQKQQGLMKLP-FTIPELVHASPCRSSDGVFYTGRKQ 129
Query: 123 TSVFFVDAKSG 133
+ F VD +SG
Sbjct: 130 DAWFVVDPESG 140
>sp|Q76MJ5|ERN2_HUMAN Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Homo
sapiens GN=ERN2 PE=1 SV=4
Length = 926
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 17 SLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVD 76
+L P PE +L LV+TL+G++H + + G+ +W+ I + F D
Sbjct: 27 TLSPQVHTLRPE--NLLLVSTLDGSLHALSKQTGDLKWTLRDDPVIEGPMYVTEMAFLSD 84
Query: 77 VGEDWKLYF--HRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGG 134
D LY +K G MK P + E + P DG G ++ + F VD +SG
Sbjct: 85 PA-DGSLYILGTQKQQGLMKLP-FTIPELVHASPCRSSDGVFYTGRKQDAWFVVDPESG- 141
Query: 135 MICSHESDNSASTLGSGLP 153
E+ + +T G P
Sbjct: 142 -----ETQMTLTTEGPSTP 155
>sp|Q09499|IRE1_CAEEL Serine/threonine-protein kinase/endoribonuclease ire-1
OS=Caenorhabditis elegans GN=ire-1 PE=2 SV=2
Length = 967
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 34 LVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDF-YVDVGEDWKLYFHRKGIGK 92
LV+T++G + +D++ GE +W+ +P+ S + F ++ D LY +
Sbjct: 46 LVSTIDGRLRALDSETGEIKWTLQ-EEPVLRSPSAVKQGFTFLPNPLDGSLYVLKNS--S 102
Query: 93 MKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGL 152
+KK ++ + + P +DG L G +K F +D K+G + E+ +SAS
Sbjct: 103 LKKLPFNIPQLVHASPCKGNDGILYAGSKKDVWFGIDPKTGLKV---ETLSSASADRICP 159
Query: 153 PMKKSFVFM 161
+K +F+
Sbjct: 160 ANQKQTIFL 168
>sp|O75460|ERN1_HUMAN Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Homo
sapiens GN=ERN1 PE=1 SV=2
Length = 977
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 21 TSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGED 80
TS PE+ L V+TL+G++H V + G +W+ + +P F D +
Sbjct: 23 TSTVTLPET--LLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDG 80
Query: 81 WKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSG 133
K + K + E ++ P DG L +G ++ + +D +G
Sbjct: 81 SLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTG 133
>sp|Q9EQY0|ERN1_MOUSE Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Mus
musculus GN=Ern1 PE=2 SV=1
Length = 977
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 21 TSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGED 80
TS PE+ L V+TL+G++H V + G +W+ + +P F D +
Sbjct: 25 TSTVTLPET--LLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDG 82
Query: 81 WKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSG 133
K + K + E ++ P DG L +G ++ + +D +G
Sbjct: 83 SLYTLGGKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTG 135
>sp|A5GR60|DER_SYNR3 GTPase Der OS=Synechococcus sp. (strain RCC307) GN=der PE=3 SV=1
Length = 452
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 10 LLTVILSSLPPTSPRASPESGDLALVATLN-GTVHLVDTKRGESRWSFSMGKPIYSSFTR 68
LL +L LPP +PE +A+V N G L++T GE+R ++ PI + TR
Sbjct: 157 LLDQVLDFLPPQDEEEAPEPIQMAIVGRPNVGKSSLLNTVCGENR---AIVSPIRGT-TR 212
Query: 69 NDPDFYVD-VGEDWKL 83
+ D ++ G+ WKL
Sbjct: 213 DTIDTSIEREGQSWKL 228
>sp|P57064|KCY_NEIMA Cytidylate kinase OS=Neisseria meningitidis serogroup A / serotype
4A (strain Z2491) GN=cmk PE=3 SV=1
Length = 218
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 74 YVDVGEDWKL---YFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTS 124
Y+D G ++L Y ++G+G + +V E +++P V+ D +LLG E S
Sbjct: 32 YLDTGALYRLTALYAQKQGVGWHDEE--NVSELAKKLPAVFSDSRILLGGEDVS 83
>sp|B0BNS8|SYA_ACTPJ Alanine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 3
(strain JL03) GN=alaS PE=3 SV=1
Length = 874
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 50 GESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKK---PSIDVGEFMRR 106
GE+ W G P D D Y++V + F+R G M+K PS+D G + R
Sbjct: 189 GETFWGGLPGSP------EEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGLER 242
Query: 107 MPHV 110
M V
Sbjct: 243 MTAV 246
>sp|B3H177|SYA_ACTP7 Alanine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 7
(strain AP76) GN=alaS PE=3 SV=1
Length = 874
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 50 GESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKK---PSIDVGEFMRR 106
GE+ W G P D D Y++V + F+R G M+K PS+D G + R
Sbjct: 189 GETFWGGLPGSP------EEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGLER 242
Query: 107 MPHV 110
M V
Sbjct: 243 MTAV 246
>sp|A3N018|SYA_ACTP2 Alanine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 5b
(strain L20) GN=alaS PE=3 SV=1
Length = 874
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 50 GESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKK---PSIDVGEFMRR 106
GE+ W G P D D Y++V + F+R G M+K PS+D G + R
Sbjct: 189 GETFWGGLPGSP------EEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGLER 242
Query: 107 MPHV 110
M V
Sbjct: 243 MTAV 246
>sp|P38539|DHM1_METME Methanol dehydrogenase [cytochrome c] subunit 1 OS=Methylophilus
methylotrophus PE=1 SV=2
Length = 573
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 30 GDLALVATLNGTVHLVDTKRGESRWSFSM-----GKPIYSSF 66
G L ATL+G + +D K G+ W+F M G P+ SF
Sbjct: 477 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF 518
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,370,197
Number of Sequences: 539616
Number of extensions: 2668460
Number of successful extensions: 5361
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5349
Number of HSP's gapped (non-prelim): 23
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)