Query 031361
Match_columns 161
No_of_seqs 101 out of 297
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 13:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11138 outer membrane biogen 99.9 1.1E-21 2.5E-26 169.5 17.7 115 26-143 64-190 (394)
2 TIGR03300 assembly_YfgL outer 99.9 1.2E-20 2.6E-25 161.1 16.7 116 26-144 60-176 (377)
3 cd00216 PQQ_DH Dehydrogenases 99.8 2.6E-19 5.5E-24 160.1 13.7 119 22-143 52-195 (488)
4 PRK11138 outer membrane biogen 99.8 2E-19 4.2E-24 155.5 12.0 112 28-142 118-234 (394)
5 cd00216 PQQ_DH Dehydrogenases 99.8 5.5E-19 1.2E-23 158.0 14.1 114 29-143 108-276 (488)
6 TIGR03074 PQQ_membr_DH membran 99.8 2.5E-18 5.5E-23 161.6 14.3 117 24-143 187-356 (764)
7 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.8 2.9E-18 6.2E-23 155.4 14.1 118 24-144 62-202 (527)
8 TIGR03300 assembly_YfgL outer 99.8 5.5E-18 1.2E-22 144.7 14.3 112 28-142 103-219 (377)
9 PF13360 PQQ_2: PQQ-like domai 99.7 8.5E-17 1.8E-21 127.4 14.8 112 29-143 35-152 (238)
10 COG1520 FOG: WD40-like repeat 99.7 3.2E-16 7E-21 134.6 14.2 114 28-144 66-184 (370)
11 PF13360 PQQ_2: PQQ-like domai 99.7 8.5E-16 1.9E-20 121.7 13.4 102 38-142 1-106 (238)
12 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.7 6.6E-16 1.4E-20 140.0 13.1 116 28-144 118-292 (527)
13 COG1520 FOG: WD40-like repeat 99.7 8.9E-16 1.9E-20 131.9 13.0 110 28-140 109-226 (370)
14 TIGR03074 PQQ_membr_DH membran 99.6 5.8E-15 1.3E-19 139.1 14.6 116 28-144 258-435 (764)
15 KOG4649 PQQ (pyrrolo-quinoline 99.5 2.9E-13 6.3E-18 114.2 10.9 119 23-143 11-135 (354)
16 KOG4649 PQQ (pyrrolo-quinoline 99.2 2E-10 4.2E-15 97.3 9.6 119 24-143 56-179 (354)
17 PF01011 PQQ: PQQ enzyme repea 99.0 5.5E-10 1.2E-14 67.5 5.3 37 31-67 1-37 (38)
18 KOG1027 Serine/threonine prote 98.9 2.9E-09 6.2E-14 100.6 7.8 111 30-143 27-137 (903)
19 PF13570 PQQ_3: PQQ-like domai 98.9 2E-09 4.3E-14 65.4 3.4 40 91-132 1-40 (40)
20 COG4993 Gcd Glucose dehydrogen 98.8 5.2E-08 1.1E-12 90.0 11.2 120 24-145 207-370 (773)
21 PF01011 PQQ: PQQ enzyme repea 98.7 2.2E-08 4.7E-13 60.5 4.5 33 114-146 1-33 (38)
22 PF13570 PQQ_3: PQQ-like domai 98.7 4.4E-08 9.5E-13 59.4 4.8 40 50-90 1-40 (40)
23 smart00564 PQQ beta-propeller 98.7 6.1E-08 1.3E-12 55.8 4.9 33 108-140 1-33 (33)
24 COG4993 Gcd Glucose dehydrogen 98.6 3.1E-07 6.8E-12 85.0 9.2 115 29-144 271-447 (773)
25 smart00564 PQQ beta-propeller 98.5 2.2E-07 4.7E-12 53.5 4.2 29 29-57 5-33 (33)
26 TIGR03866 PQQ_ABC_repeats PQQ- 98.2 8.8E-05 1.9E-09 59.1 14.1 108 31-141 2-113 (300)
27 cd00200 WD40 WD40 domain, foun 98.0 0.00027 5.8E-09 53.9 12.5 108 30-140 147-258 (289)
28 cd00200 WD40 WD40 domain, foun 98.0 0.00042 9E-09 52.8 13.5 113 29-142 62-176 (289)
29 PF02239 Cytochrom_D1: Cytochr 97.7 0.00063 1.4E-08 59.6 12.4 114 30-145 5-122 (369)
30 KOG0316 Conserved WD40 repeat- 97.6 0.00038 8.2E-09 58.7 9.1 127 28-158 153-286 (307)
31 TIGR03866 PQQ_ABC_repeats PQQ- 97.6 0.005 1.1E-07 48.9 14.5 110 29-140 83-196 (300)
32 PTZ00421 coronin; Provisional 97.4 0.01 2.2E-07 54.0 15.3 114 27-142 85-209 (493)
33 PF14269 Arylsulfotran_2: Aryl 97.2 0.0042 9E-08 53.1 10.6 103 38-142 23-184 (299)
34 KOG1036 Mitotic spindle checkp 97.2 0.0041 8.8E-08 53.7 10.2 103 28-132 23-125 (323)
35 TIGR02658 TTQ_MADH_Hv methylam 97.2 0.01 2.2E-07 52.1 12.6 113 26-141 202-340 (352)
36 KOG0296 Angio-associated migra 97.1 0.012 2.7E-07 51.9 12.9 112 29-143 117-232 (399)
37 KOG0278 Serine/threonine kinas 97.0 0.015 3.2E-07 49.7 11.4 109 29-139 154-262 (334)
38 PLN00181 protein SPA1-RELATED; 96.9 0.023 4.9E-07 53.8 13.8 105 29-135 544-652 (793)
39 PF05567 Neisseria_PilC: Neiss 96.8 0.0075 1.6E-07 52.3 9.0 115 30-145 13-204 (335)
40 PF05935 Arylsulfotrans: Aryls 96.8 0.017 3.6E-07 52.3 11.4 113 28-146 112-246 (477)
41 PTZ00420 coronin; Provisional 96.8 0.05 1.1E-06 50.6 14.7 112 27-141 84-207 (568)
42 KOG0316 Conserved WD40 repeat- 96.8 0.0061 1.3E-07 51.6 7.5 112 28-141 69-223 (307)
43 PF05935 Arylsulfotrans: Aryls 96.7 0.046 1E-06 49.4 13.4 115 29-148 157-318 (477)
44 PTZ00420 coronin; Provisional 96.7 0.077 1.7E-06 49.4 14.7 112 31-143 139-261 (568)
45 TIGR02658 TTQ_MADH_Hv methylam 96.6 0.068 1.5E-06 47.0 13.4 113 29-143 11-148 (352)
46 PLN00181 protein SPA1-RELATED; 96.6 0.096 2.1E-06 49.7 15.4 110 29-140 587-705 (793)
47 KOG0643 Translation initiation 96.6 0.038 8.2E-07 47.5 11.1 118 29-147 63-236 (327)
48 PTZ00421 coronin; Provisional 96.6 0.12 2.6E-06 47.2 15.1 112 29-140 179-299 (493)
49 PRK04792 tolB translocation pr 96.5 0.094 2E-06 46.8 13.6 106 29-137 272-388 (448)
50 PF05567 Neisseria_PilC: Neiss 96.4 0.013 2.8E-07 50.8 7.7 83 39-121 180-278 (335)
51 KOG1027 Serine/threonine prote 96.4 0.011 2.4E-07 56.9 7.7 105 28-141 105-211 (903)
52 PF02239 Cytochrom_D1: Cytochr 96.4 0.11 2.5E-06 45.4 13.4 112 27-143 45-159 (369)
53 KOG0282 mRNA splicing factor [ 96.4 0.0034 7.3E-08 56.9 3.7 131 27-158 224-357 (503)
54 TIGR02800 propeller_TolB tol-p 96.2 0.35 7.5E-06 41.5 15.3 106 29-137 200-316 (417)
55 PRK14131 N-acetylneuraminic ac 96.2 0.19 4.2E-06 43.5 13.7 92 29-122 37-149 (376)
56 PRK04922 tolB translocation pr 96.2 0.17 3.7E-06 44.5 13.4 105 29-136 258-373 (433)
57 PRK05137 tolB translocation pr 96.2 0.22 4.7E-06 43.9 14.1 107 28-137 164-284 (435)
58 PRK00178 tolB translocation pr 96.1 0.2 4.4E-06 43.6 13.6 107 29-138 253-370 (430)
59 PRK05137 tolB translocation pr 96.1 0.34 7.4E-06 42.6 14.9 108 29-139 212-330 (435)
60 PF08450 SGL: SMP-30/Gluconola 96.1 0.14 3.1E-06 41.2 11.5 106 30-140 11-131 (246)
61 PRK03629 tolB translocation pr 96.0 0.18 3.8E-06 44.7 12.8 105 29-136 253-368 (429)
62 KOG0649 WD40 repeat protein [G 95.9 0.043 9.3E-07 46.8 7.9 115 29-146 71-201 (325)
63 PRK00178 tolB translocation pr 95.9 0.38 8.2E-06 42.0 14.2 106 29-137 209-325 (430)
64 KOG1446 Histone H3 (Lys4) meth 95.9 0.24 5.2E-06 42.9 12.4 70 72-142 200-273 (311)
65 PRK04043 tolB translocation pr 95.8 0.67 1.4E-05 41.3 15.4 107 29-138 198-316 (419)
66 KOG1539 WD repeat protein [Gen 95.8 0.12 2.5E-06 50.0 10.9 110 29-143 171-287 (910)
67 PF08450 SGL: SMP-30/Gluconola 95.7 0.43 9.2E-06 38.4 12.9 110 29-142 95-223 (246)
68 PRK04792 tolB translocation pr 95.7 0.7 1.5E-05 41.2 15.4 107 29-138 228-345 (448)
69 PRK03629 tolB translocation pr 95.7 0.57 1.2E-05 41.4 14.7 97 39-138 222-326 (429)
70 PRK02889 tolB translocation pr 95.7 0.35 7.7E-06 42.6 13.2 108 29-139 250-368 (427)
71 KOG0266 WD40 repeat-containing 95.6 0.36 7.8E-06 43.2 13.1 107 29-136 214-323 (456)
72 PF06433 Me-amine-dh_H: Methyl 95.6 0.22 4.7E-06 43.8 11.3 118 29-147 194-336 (342)
73 PF14269 Arylsulfotran_2: Aryl 95.2 0.55 1.2E-05 40.2 12.2 104 38-142 94-251 (299)
74 KOG4547 WD40 repeat-containing 95.1 0.38 8.1E-06 44.6 11.7 114 29-144 69-185 (541)
75 PRK01742 tolB translocation pr 95.1 0.92 2E-05 40.0 13.9 106 29-137 214-330 (429)
76 KOG1446 Histone H3 (Lys4) meth 95.1 0.31 6.8E-06 42.2 10.5 73 27-100 196-272 (311)
77 PRK04922 tolB translocation pr 95.0 1 2.2E-05 39.7 13.9 108 29-141 302-420 (433)
78 KOG2106 Uncharacterized conser 95.0 0.19 4.2E-06 46.4 9.3 110 31-153 349-469 (626)
79 KOG2103 Uncharacterized conser 94.9 0.13 2.9E-06 49.6 8.5 102 29-143 46-149 (910)
80 KOG0291 WD40-repeat-containing 94.9 0.25 5.4E-06 47.5 10.2 100 29-129 403-506 (893)
81 TIGR02800 propeller_TolB tol-p 94.9 1.4 2.9E-05 37.8 14.0 109 29-141 288-406 (417)
82 PF14783 BBS2_Mid: Ciliary BBS 94.8 0.9 2E-05 33.9 11.0 90 30-125 15-108 (111)
83 PRK02889 tolB translocation pr 94.8 1.7 3.7E-05 38.3 14.7 107 29-138 206-323 (427)
84 KOG0266 WD40 repeat-containing 94.8 1 2.2E-05 40.3 13.3 115 29-144 257-377 (456)
85 COG3419 PilY1 Tfp pilus assemb 94.7 0.16 3.4E-06 50.1 8.5 107 29-136 581-734 (1036)
86 KOG0296 Angio-associated migra 94.6 1.5 3.3E-05 39.0 13.7 124 29-156 75-203 (399)
87 TIGR03547 muta_rot_YjhT mutatr 94.6 0.99 2.1E-05 38.2 12.3 76 16-91 2-95 (346)
88 KOG0288 WD40 repeat protein Ti 94.5 0.54 1.2E-05 42.4 10.7 116 30-146 312-432 (459)
89 KOG1539 WD repeat protein [Gen 94.5 0.77 1.7E-05 44.6 12.3 111 22-133 207-322 (910)
90 KOG0291 WD40-repeat-containing 94.3 1.2 2.7E-05 43.0 13.1 126 28-154 360-489 (893)
91 KOG0270 WD40 repeat-containing 94.2 0.62 1.3E-05 42.2 10.5 112 29-144 255-374 (463)
92 KOG0310 Conserved WD40 repeat- 94.2 1.1 2.3E-05 41.0 12.0 117 26-143 162-280 (487)
93 KOG0279 G protein beta subunit 94.1 1.6 3.5E-05 37.8 12.4 114 28-142 73-233 (315)
94 PF14583 Pectate_lyase22: Olig 94.1 0.6 1.3E-05 41.7 10.2 115 29-146 46-191 (386)
95 PF14517 Tachylectin: Tachylec 94.1 0.33 7E-06 40.5 8.0 106 33-142 85-206 (229)
96 KOG2048 WD40 repeat protein [G 94.0 0.8 1.7E-05 43.4 11.1 105 29-137 79-190 (691)
97 KOG2103 Uncharacterized conser 93.9 0.38 8.1E-06 46.6 9.1 33 30-62 451-483 (910)
98 KOG1036 Mitotic spindle checkp 93.9 1.1 2.4E-05 39.0 11.0 104 29-135 64-167 (323)
99 KOG0275 Conserved WD40 repeat- 93.8 1.1 2.3E-05 39.9 11.1 123 29-154 359-490 (508)
100 KOG0278 Serine/threonine kinas 93.8 1 2.2E-05 38.7 10.5 104 29-145 194-302 (334)
101 PLN02919 haloacid dehalogenase 93.8 2.7 5.9E-05 41.9 15.1 109 29-138 750-895 (1057)
102 KOG0271 Notchless-like WD40 re 93.7 0.3 6.6E-06 43.9 7.4 111 28-146 167-291 (480)
103 KOG0318 WD40 repeat stress pro 93.6 1.7 3.7E-05 40.4 12.3 124 29-153 201-330 (603)
104 PHA02713 hypothetical protein; 93.5 0.84 1.8E-05 42.1 10.5 90 41-135 433-537 (557)
105 PRK01029 tolB translocation pr 93.5 4.2 9.2E-05 36.1 14.6 108 32-143 295-415 (428)
106 COG3391 Uncharacterized conser 93.4 2.8 6.1E-05 36.6 13.1 110 28-138 125-246 (381)
107 COG0823 TolB Periplasmic compo 93.3 2.8 6.1E-05 37.7 13.2 131 25-159 245-385 (425)
108 KOG0282 mRNA splicing factor [ 93.0 0.65 1.4E-05 42.5 8.7 108 29-137 269-378 (503)
109 PF05096 Glu_cyclase_2: Glutam 92.9 5.2 0.00011 34.0 13.7 111 29-142 54-168 (264)
110 KOG2055 WD40 repeat protein [G 92.8 1.6 3.4E-05 40.1 10.8 75 29-104 314-388 (514)
111 KOG0286 G-protein beta subunit 92.8 2.9 6.3E-05 36.5 11.9 117 29-146 155-274 (343)
112 COG3386 Gluconolactonase [Carb 92.7 3.7 8E-05 35.4 12.7 123 32-159 39-178 (307)
113 PHA02713 hypothetical protein; 92.7 2.3 4.9E-05 39.3 11.9 104 28-139 349-495 (557)
114 PF14583 Pectate_lyase22: Olig 92.1 0.8 1.7E-05 40.9 8.0 100 44-146 14-125 (386)
115 KOG0270 WD40 repeat-containing 92.0 0.82 1.8E-05 41.5 7.9 109 27-136 339-454 (463)
116 PRK01742 tolB translocation pr 91.8 6.1 0.00013 34.8 13.2 104 30-141 303-413 (429)
117 KOG1273 WD40 repeat protein [G 91.7 3.3 7.2E-05 36.6 11.0 116 28-143 75-195 (405)
118 KOG0646 WD40 repeat protein [G 91.5 0.82 1.8E-05 41.6 7.4 52 75-127 97-149 (476)
119 KOG0280 Uncharacterized conser 91.3 2.6 5.6E-05 36.8 10.0 105 29-135 132-246 (339)
120 KOG0274 Cdc4 and related F-box 91.3 5 0.00011 37.2 12.6 110 29-141 260-369 (537)
121 KOG1274 WD40 repeat protein [G 91.3 3.3 7.2E-05 40.6 11.6 120 28-149 64-186 (933)
122 KOG0285 Pleiotropic regulator 91.0 1.5 3.2E-05 39.3 8.3 125 29-154 288-451 (460)
123 KOG0275 Conserved WD40 repeat- 90.9 0.27 5.9E-06 43.5 3.7 87 70-157 317-404 (508)
124 PF14339 DUF4394: Domain of un 90.8 4.3 9.3E-05 34.0 10.6 109 28-139 36-161 (236)
125 KOG2055 WD40 repeat protein [G 90.7 3.2 6.9E-05 38.1 10.3 126 17-144 257-387 (514)
126 PRK04043 tolB translocation pr 90.7 12 0.00025 33.4 14.3 105 28-137 153-271 (419)
127 KOG0273 Beta-transducin family 90.6 3.5 7.6E-05 37.9 10.5 103 27-130 419-522 (524)
128 KOG0649 WD40 repeat protein [G 90.5 1.3 2.9E-05 37.9 7.3 65 29-93 125-190 (325)
129 COG3391 Uncharacterized conser 90.5 11 0.00024 32.9 13.4 112 28-144 169-296 (381)
130 PF09910 DUF2139: Uncharacteri 90.0 3.2 6.9E-05 36.3 9.3 105 28-136 115-235 (339)
131 KOG0646 WD40 repeat protein [G 89.8 1.4 3.1E-05 40.1 7.4 29 26-54 89-117 (476)
132 PHA03098 kelch-like protein; P 89.5 7.5 0.00016 35.0 11.9 102 29-138 388-516 (534)
133 PHA02790 Kelch-like protein; P 89.4 6.7 0.00015 35.3 11.5 99 28-135 360-474 (480)
134 KOG0265 U5 snRNP-specific prot 89.4 4.6 0.0001 35.3 9.9 68 70-139 101-171 (338)
135 PHA03098 kelch-like protein; P 89.4 7.6 0.00016 34.9 11.9 102 29-135 341-468 (534)
136 KOG0647 mRNA export protein (c 89.2 5.5 0.00012 34.9 10.2 127 26-155 36-169 (347)
137 KOG0279 G protein beta subunit 89.1 9.7 0.00021 33.1 11.5 115 30-146 162-277 (315)
138 PF08553 VID27: VID27 cytoplas 89.0 2.7 5.9E-05 40.9 9.1 101 30-134 493-608 (794)
139 KOG2106 Uncharacterized conser 88.6 5.2 0.00011 37.3 10.1 106 29-139 379-486 (626)
140 TIGR03548 mutarot_permut cycli 88.5 14 0.00029 31.1 12.5 106 29-139 71-200 (323)
141 KOG0265 U5 snRNP-specific prot 88.3 6.4 0.00014 34.4 10.0 110 29-140 101-213 (338)
142 KOG0310 Conserved WD40 repeat- 88.0 2.8 6.1E-05 38.4 8.0 111 33-143 83-197 (487)
143 KOG0293 WD40 repeat-containing 87.8 3.9 8.4E-05 37.3 8.7 126 29-154 365-493 (519)
144 smart00108 B_lectin Bulb-type 86.6 8.1 0.00018 27.7 8.5 84 37-138 27-110 (114)
145 KOG0286 G-protein beta subunit 86.6 21 0.00046 31.3 12.8 112 29-141 66-184 (343)
146 TIGR02276 beta_rpt_yvtn 40-res 86.6 2.9 6.4E-05 24.1 5.2 32 114-145 4-36 (42)
147 KOG2321 WD40 repeat protein [G 86.2 6.1 0.00013 37.4 9.2 109 31-141 147-268 (703)
148 KOG0295 WD40 repeat-containing 86.0 13 0.00028 33.4 10.7 94 30-124 304-399 (406)
149 KOG0271 Notchless-like WD40 re 86.0 3.4 7.3E-05 37.4 7.2 113 29-141 257-407 (480)
150 KOG0301 Phospholipase A2-activ 85.9 8.5 0.00018 36.9 10.2 94 31-129 191-286 (745)
151 KOG0280 Uncharacterized conser 85.8 2.8 6.1E-05 36.6 6.5 59 28-89 176-241 (339)
152 PRK11028 6-phosphogluconolacto 85.7 19 0.00042 29.9 12.0 109 29-137 90-213 (330)
153 KOG0283 WD40 repeat-containing 85.6 14 0.0003 35.6 11.5 112 29-142 379-492 (712)
154 KOG2048 WD40 repeat protein [G 85.6 8.9 0.00019 36.6 10.1 110 30-140 165-284 (691)
155 KOG4378 Nuclear protein COP1 [ 85.2 5.5 0.00012 37.2 8.3 99 27-134 174-283 (673)
156 KOG3914 WD repeat protein WDR4 84.8 5.1 0.00011 35.9 7.8 107 29-140 118-232 (390)
157 PLN02919 haloacid dehalogenase 84.7 40 0.00088 33.8 14.8 111 30-142 694-844 (1057)
158 KOG0643 Translation initiation 84.5 5 0.00011 34.7 7.4 90 29-122 158-252 (327)
159 KOG0274 Cdc4 and related F-box 84.4 12 0.00027 34.7 10.5 110 29-142 340-452 (537)
160 TIGR03032 conserved hypothetic 84.3 11 0.00024 33.1 9.6 81 63-146 205-305 (335)
161 PRK11028 6-phosphogluconolacto 82.7 25 0.00055 29.2 11.0 96 32-131 3-110 (330)
162 KOG0285 Pleiotropic regulator 82.6 19 0.00042 32.4 10.4 110 29-141 162-275 (460)
163 KOG2395 Protein involved in va 82.5 3.4 7.4E-05 38.7 5.9 105 31-138 346-465 (644)
164 KOG0268 Sof1-like rRNA process 82.0 5.3 0.00012 35.8 6.7 34 31-64 80-114 (433)
165 cd00028 B_lectin Bulb-type man 81.9 14 0.00031 26.5 8.1 83 39-139 30-112 (116)
166 PRK01029 tolB translocation pr 81.5 38 0.00083 30.1 13.6 106 32-139 245-367 (428)
167 KOG0263 Transcription initiati 81.3 16 0.00035 35.2 10.0 101 29-131 546-649 (707)
168 PF06433 Me-amine-dh_H: Methyl 80.6 4.6 0.0001 35.6 5.9 67 29-95 248-326 (342)
169 KOG0647 mRNA export protein (c 80.4 29 0.00063 30.5 10.5 101 29-133 83-186 (347)
170 PF05096 Glu_cyclase_2: Glutam 80.1 36 0.00079 29.0 12.0 110 29-143 98-215 (264)
171 PF12894 Apc4_WD40: Anaphase-p 80.0 2.4 5.3E-05 26.6 3.0 27 28-55 21-47 (47)
172 PLN02193 nitrile-specifier pro 79.9 37 0.0008 30.5 11.6 103 29-139 227-357 (470)
173 KOG0281 Beta-TrCP (transducin 79.5 11 0.00023 34.0 7.8 48 92-139 341-396 (499)
174 KOG4499 Ca2+-binding protein R 79.4 22 0.00049 30.5 9.3 72 29-101 169-252 (310)
175 PLN02193 nitrile-specifier pro 79.4 32 0.00069 30.9 11.1 101 29-135 277-414 (470)
176 KOG0379 Kelch repeat-containin 79.3 23 0.00049 32.2 10.2 105 28-138 121-254 (482)
177 KOG1645 RING-finger-containing 79.0 11 0.00023 34.3 7.7 67 25-91 201-268 (463)
178 KOG0273 Beta-transducin family 78.2 19 0.00041 33.3 9.1 73 71-144 422-495 (524)
179 KOG0283 WD40 repeat-containing 77.8 17 0.00037 35.1 9.1 114 27-145 419-546 (712)
180 KOG1272 WD40-repeat-containing 77.4 4.1 8.8E-05 37.6 4.6 113 29-153 140-261 (545)
181 PF15525 DUF4652: Domain of un 77.4 10 0.00022 31.0 6.5 53 40-93 88-152 (200)
182 KOG0276 Vesicle coat complex C 77.0 40 0.00086 32.5 11.0 103 29-132 24-128 (794)
183 PF09910 DUF2139: Uncharacteri 77.0 50 0.0011 29.1 11.0 106 36-141 5-149 (339)
184 KOG0303 Actin-binding protein 77.0 7.9 0.00017 35.1 6.3 61 78-139 151-211 (472)
185 PF14727 PHTB1_N: PTHB1 N-term 76.6 58 0.0013 29.4 12.3 121 20-146 172-331 (418)
186 TIGR02276 beta_rpt_yvtn 40-res 76.4 12 0.00026 21.4 5.2 32 29-60 2-34 (42)
187 COG0823 TolB Periplasmic compo 76.3 59 0.0013 29.3 13.1 130 27-160 202-342 (425)
188 KOG0315 G-protein beta subunit 76.0 51 0.0011 28.5 10.6 108 32-141 12-123 (311)
189 KOG0277 Peroxisomal targeting 75.5 36 0.00077 29.5 9.5 124 20-146 11-150 (311)
190 TIGR03548 mutarot_permut cycli 75.3 48 0.001 27.7 12.5 96 41-139 40-153 (323)
191 PHA02790 Kelch-like protein; P 75.2 63 0.0014 29.1 12.0 105 29-140 270-391 (480)
192 KOG0276 Vesicle coat complex C 74.6 46 0.001 32.1 10.8 112 29-151 66-182 (794)
193 COG2146 {NirD} Ferredoxin subu 74.3 30 0.00065 25.0 8.3 77 31-119 28-104 (106)
194 COG3386 Gluconolactonase [Carb 73.7 58 0.0013 28.0 11.2 41 80-122 234-276 (307)
195 KOG0640 mRNA cleavage stimulat 73.5 47 0.001 29.6 10.0 109 29-143 227-347 (430)
196 KOG0277 Peroxisomal targeting 73.4 61 0.0013 28.1 10.6 105 27-134 114-224 (311)
197 KOG0318 WD40 repeat stress pro 73.0 68 0.0015 30.2 11.3 105 29-134 289-395 (603)
198 KOG4499 Ca2+-binding protein R 72.8 49 0.0011 28.5 9.7 33 110-142 219-252 (310)
199 KOG0315 G-protein beta subunit 72.7 58 0.0013 28.2 10.1 105 29-134 94-200 (311)
200 KOG0319 WD40-repeat-containing 72.5 26 0.00057 33.9 8.8 111 29-140 203-320 (775)
201 PF14517 Tachylectin: Tachylec 72.2 8.9 0.00019 32.0 5.1 104 32-141 37-158 (229)
202 KOG0268 Sof1-like rRNA process 71.8 12 0.00025 33.7 6.0 100 27-135 197-306 (433)
203 KOG0319 WD40-repeat-containing 71.7 12 0.00025 36.2 6.3 110 31-142 162-279 (775)
204 PF00930 DPPIV_N: Dipeptidyl p 71.6 50 0.0011 28.2 9.8 94 41-136 211-321 (353)
205 PLN02153 epithiospecifier prot 71.3 62 0.0013 27.3 11.2 103 29-139 31-173 (341)
206 KOG3881 Uncharacterized conser 71.3 34 0.00074 30.9 8.8 114 25-138 156-284 (412)
207 PRK09838 periplasmic copper-bi 71.0 9.1 0.0002 28.6 4.5 54 1-54 1-61 (115)
208 KOG0284 Polyadenylation factor 69.8 15 0.00032 33.5 6.2 68 70-138 191-259 (464)
209 KOG1445 Tumor-specific antigen 69.4 15 0.00032 35.6 6.4 102 26-138 88-208 (1012)
210 KOG0281 Beta-TrCP (transducin 69.3 18 0.00039 32.6 6.6 99 29-131 329-428 (499)
211 KOG2321 WD40 repeat protein [G 68.4 69 0.0015 30.6 10.4 108 35-144 69-218 (703)
212 KOG0295 WD40 repeat-containing 68.4 87 0.0019 28.2 10.6 113 29-142 204-333 (406)
213 KOG4441 Proteins containing BT 68.4 80 0.0017 29.5 11.1 64 27-92 282-360 (571)
214 PF00780 CNH: CNH domain; Int 68.1 20 0.00042 28.9 6.3 30 114-144 149-178 (275)
215 TIGR00547 lolA periplasmic cha 67.7 14 0.0003 29.9 5.3 21 38-60 57-77 (204)
216 PF00930 DPPIV_N: Dipeptidyl p 67.4 49 0.0011 28.3 8.9 87 29-118 247-343 (353)
217 KOG0264 Nucleosome remodeling 66.8 46 0.001 30.2 8.7 101 28-135 188-307 (422)
218 PLN02153 epithiospecifier prot 66.6 79 0.0017 26.7 11.9 90 41-138 160-289 (341)
219 TIGR03547 muta_rot_YjhT mutatr 66.3 79 0.0017 26.6 12.2 56 82-140 169-234 (346)
220 KOG0639 Transducin-like enhanc 66.0 12 0.00025 35.2 4.9 113 28-141 475-591 (705)
221 KOG4441 Proteins containing BT 66.0 95 0.0021 29.0 11.1 82 53-137 407-505 (571)
222 PF10282 Lactonase: Lactonase, 65.8 57 0.0012 27.8 9.0 66 28-93 254-328 (345)
223 KOG4190 Uncharacterized conser 65.5 6.9 0.00015 37.2 3.4 113 29-141 793-916 (1034)
224 COG3419 PilY1 Tfp pilus assemb 65.1 7.4 0.00016 38.9 3.7 59 90-148 534-617 (1036)
225 KOG0379 Kelch repeat-containin 63.9 51 0.0011 29.9 8.7 91 41-134 89-201 (482)
226 KOG3914 WD repeat protein WDR4 63.6 25 0.00054 31.6 6.4 74 29-103 162-236 (390)
227 KOG0308 Conserved WD40 repeat- 63.4 53 0.0011 31.6 8.8 106 32-141 185-296 (735)
228 PF03032 Brevenin: Brevenin/es 63.4 5.2 0.00011 25.3 1.6 18 1-18 3-20 (46)
229 KOG0299 U3 snoRNP-associated p 63.4 46 0.00099 30.6 8.1 82 28-109 336-424 (479)
230 PF10282 Lactonase: Lactonase, 62.7 88 0.0019 26.6 9.5 105 32-138 1-125 (345)
231 COG3055 Uncharacterized protei 62.6 68 0.0015 28.8 8.9 63 29-91 45-123 (381)
232 COG4946 Uncharacterized protei 62.4 1.4E+02 0.003 28.2 11.0 65 72-138 373-438 (668)
233 KOG0294 WD40 repeat-containing 62.1 87 0.0019 27.8 9.3 108 29-140 138-246 (362)
234 smart00108 B_lectin Bulb-type 61.9 55 0.0012 23.3 8.2 59 27-96 51-109 (114)
235 PF14298 DUF4374: Domain of un 61.6 21 0.00045 32.6 5.7 56 80-137 366-430 (435)
236 KOG4547 WD40 repeat-containing 61.5 1.5E+02 0.0031 28.0 11.6 109 35-144 10-145 (541)
237 KOG1332 Vesicle coat complex C 61.5 71 0.0015 27.5 8.5 94 29-133 22-136 (299)
238 KOG0284 Polyadenylation factor 61.3 39 0.00084 30.9 7.2 128 29-157 191-320 (464)
239 KOG0308 Conserved WD40 repeat- 60.5 50 0.0011 31.8 8.1 119 29-151 129-273 (735)
240 PF08553 VID27: VID27 cytoplas 60.2 74 0.0016 31.2 9.4 99 30-131 542-647 (794)
241 PRK14131 N-acetylneuraminic ac 59.9 1.1E+02 0.0025 26.3 12.1 37 82-121 190-230 (376)
242 KOG2079 Vacuolar assembly/sort 59.8 30 0.00065 35.1 6.7 112 25-146 94-209 (1206)
243 PF10913 DUF2706: Protein of u 59.7 14 0.00031 24.2 3.1 27 1-27 1-31 (60)
244 PF11768 DUF3312: Protein of u 59.6 45 0.00097 31.3 7.6 63 28-93 269-333 (545)
245 PF14727 PHTB1_N: PTHB1 N-term 59.0 1.4E+02 0.003 27.0 12.8 116 30-148 145-286 (418)
246 PRK05560 DNA gyrase subunit A; 59.0 81 0.0017 30.8 9.5 101 29-131 547-670 (805)
247 KOG4328 WD40 protein [Function 58.5 25 0.00054 32.4 5.6 77 25-102 242-322 (498)
248 KOG1007 WD repeat protein TSSC 58.4 27 0.00059 30.7 5.6 96 27-129 180-287 (370)
249 KOG1188 WD40 repeat protein [G 57.8 86 0.0019 28.0 8.6 103 29-131 83-196 (376)
250 COG4257 Vgb Streptogramin lyas 56.1 1.2E+02 0.0027 26.6 9.2 105 29-136 71-181 (353)
251 KOG0640 mRNA cleavage stimulat 55.7 33 0.00071 30.6 5.7 131 29-159 272-412 (430)
252 cd00028 B_lectin Bulb-type man 55.6 73 0.0016 22.7 8.0 54 30-93 55-108 (116)
253 PF01453 B_lectin: D-mannose b 55.4 77 0.0017 22.9 7.1 75 51-139 3-78 (114)
254 KOG0306 WD40-repeat-containing 55.0 1E+02 0.0022 30.4 9.2 105 23-135 328-446 (888)
255 COG3823 Glutamine cyclotransfe 54.9 1.3E+02 0.0029 25.4 9.1 108 29-139 54-166 (262)
256 KOG0313 Microtubule binding pr 54.7 1.3E+02 0.0029 27.2 9.4 99 29-129 114-221 (423)
257 PF03413 PepSY: Peptidase prop 54.0 31 0.00066 21.4 4.1 18 122-139 45-64 (64)
258 PF14779 BBS1: Ciliary BBSome 53.3 54 0.0012 27.9 6.5 57 29-86 194-255 (257)
259 PF01453 B_lectin: D-mannose b 53.2 84 0.0018 22.7 7.5 57 30-96 19-76 (114)
260 TIGR02604 Piru_Ver_Nterm putat 52.9 1.5E+02 0.0033 25.5 11.7 30 107-136 128-177 (367)
261 COG2319 FOG: WD40 repeat [Gene 52.6 1.1E+02 0.0023 23.8 12.7 108 31-139 168-280 (466)
262 PF00780 CNH: CNH domain; Int 52.6 1.2E+02 0.0026 24.3 11.4 104 29-143 147-267 (275)
263 PRK02888 nitrous-oxide reducta 52.2 1.6E+02 0.0035 28.2 10.1 91 36-132 211-305 (635)
264 KOG0293 WD40 repeat-containing 51.9 70 0.0015 29.4 7.3 69 29-97 280-350 (519)
265 KOG4714 Nucleoporin [Nuclear s 51.6 46 0.00099 28.9 5.8 59 27-89 189-254 (319)
266 KOG0301 Phospholipase A2-activ 51.6 1.7E+02 0.0038 28.4 10.1 98 29-129 150-247 (745)
267 COG4946 Uncharacterized protei 50.3 2.3E+02 0.0049 26.8 13.0 67 29-96 370-437 (668)
268 COG2706 3-carboxymuconate cycl 50.1 65 0.0014 28.6 6.7 53 83-136 20-79 (346)
269 PRK13861 type IV secretion sys 49.6 96 0.0021 26.6 7.6 25 29-53 41-65 (292)
270 KOG2444 WD40 repeat protein [G 48.8 38 0.00082 28.5 4.8 69 71-140 71-141 (238)
271 KOG1188 WD40 repeat protein [G 48.8 84 0.0018 28.1 7.1 104 30-135 40-155 (376)
272 PF00054 Laminin_G_1: Laminin 48.4 88 0.0019 22.7 6.4 29 33-61 11-40 (131)
273 TIGR01063 gyrA DNA gyrase, A s 47.2 1.6E+02 0.0034 28.8 9.5 101 29-131 545-668 (800)
274 PRK10449 heat-inducible protei 47.1 85 0.0018 23.7 6.2 22 1-22 1-22 (140)
275 TIGR03118 PEPCTERM_chp_1 conse 46.9 67 0.0015 28.3 6.2 70 38-112 220-298 (336)
276 KOG0322 G-protein beta subunit 46.4 1.3E+02 0.0028 26.2 7.8 106 32-138 167-288 (323)
277 PF06835 LptC: Lipopolysacchar 46.0 30 0.00065 25.8 3.6 21 39-60 39-59 (176)
278 PRK13883 conjugal transfer pro 46.0 16 0.00034 28.7 2.0 19 1-19 1-19 (151)
279 PF14435 SUKH-4: SUKH-4 immuni 44.7 34 0.00074 26.3 3.8 27 114-140 76-103 (179)
280 KOG0289 mRNA splicing factor [ 44.3 2.1E+02 0.0046 26.5 9.1 100 35-138 364-467 (506)
281 PLN03215 ascorbic acid mannose 43.7 58 0.0013 29.1 5.5 49 83-137 175-223 (373)
282 PF14779 BBS1: Ciliary BBSome 43.4 59 0.0013 27.6 5.2 55 73-129 198-256 (257)
283 KOG0303 Actin-binding protein 43.4 2.7E+02 0.0058 25.6 9.9 67 27-93 141-207 (472)
284 PF15525 DUF4652: Domain of un 43.3 1E+02 0.0023 25.3 6.4 61 81-143 88-160 (200)
285 KOG0269 WD40 repeat-containing 42.8 1.6E+02 0.0035 29.0 8.5 100 27-132 143-251 (839)
286 PF11153 DUF2931: Protein of u 42.8 52 0.0011 26.4 4.7 50 1-51 1-65 (216)
287 KOG0650 WD40 repeat nucleolar 42.4 70 0.0015 30.7 6.0 36 29-64 411-446 (733)
288 PF03022 MRJP: Major royal jel 42.2 1.6E+02 0.0035 24.8 7.8 90 42-142 3-106 (287)
289 PF07569 Hira: TUP1-like enhan 41.7 1.2E+02 0.0026 24.6 6.8 28 29-56 21-48 (219)
290 COG5341 Uncharacterized protei 41.7 1.6E+02 0.0035 22.6 7.1 71 31-109 38-111 (132)
291 KOG0289 mRNA splicing factor [ 41.5 2.9E+02 0.0064 25.6 12.4 110 29-143 314-431 (506)
292 PRK03999 translation initiatio 41.0 1.4E+02 0.003 22.5 6.5 58 83-142 44-101 (129)
293 KOG4283 Transcription-coupled 40.6 2.3E+02 0.005 25.2 8.5 100 27-129 111-217 (397)
294 PF02393 US22: US22 like; Int 40.4 45 0.00098 23.9 3.7 29 28-57 79-107 (125)
295 PF07172 GRP: Glycine rich pro 39.8 15 0.00032 26.5 1.0 21 2-22 4-26 (95)
296 COG2319 FOG: WD40 repeat [Gene 39.5 1.8E+02 0.0039 22.5 12.2 111 29-141 76-196 (466)
297 KOG0306 WD40-repeat-containing 38.6 2.7E+02 0.0059 27.6 9.3 30 32-61 79-108 (888)
298 COG5184 ATS1 Alpha-tubulin sup 38.4 1.7E+02 0.0038 27.1 7.7 103 30-135 185-305 (476)
299 KOG3881 Uncharacterized conser 38.1 81 0.0018 28.5 5.5 62 29-93 258-324 (412)
300 KOG1274 WD40 repeat protein [G 37.8 4.4E+02 0.0095 26.5 11.3 116 29-146 107-233 (933)
301 PF00400 WD40: WD domain, G-be 37.4 57 0.0012 17.9 3.1 18 29-46 22-39 (39)
302 PF13806 Rieske_2: Rieske-like 36.5 81 0.0018 22.6 4.5 80 29-118 22-103 (104)
303 COG4880 Secreted protein conta 36.3 3.6E+02 0.0078 25.3 9.3 14 125-138 232-245 (603)
304 KOG0771 Prolactin regulatory e 36.1 1.9E+02 0.0041 26.2 7.4 45 96-140 274-320 (398)
305 KOG0639 Transducin-like enhanc 36.0 1.5E+02 0.0034 28.0 7.1 116 28-146 519-636 (705)
306 PHA03092 semaphorin-like prote 35.0 66 0.0014 24.4 3.8 85 50-139 14-100 (134)
307 PF13590 DUF4136: Domain of un 34.9 42 0.00092 24.5 2.9 23 124-146 106-128 (151)
308 KOG0299 U3 snoRNP-associated p 34.8 1.7E+02 0.0036 27.1 7.0 120 28-148 212-373 (479)
309 PF14339 DUF4394: Domain of un 34.1 2.8E+02 0.0061 23.3 10.2 64 71-135 39-107 (236)
310 PRK13684 Ycf48-like protein; P 34.0 3E+02 0.0065 23.5 10.9 106 30-140 183-295 (334)
311 smart00456 WW Domain with 2 co 33.8 40 0.00087 18.4 2.0 22 35-56 8-29 (32)
312 KOG0294 WD40 repeat-containing 32.8 3.6E+02 0.0078 24.0 9.6 119 28-147 51-173 (362)
313 KOG2110 Uncharacterized conser 32.3 70 0.0015 28.8 4.1 28 30-57 312-341 (391)
314 PF14298 DUF4374: Domain of un 31.8 1.3E+02 0.0028 27.5 5.9 55 39-93 366-428 (435)
315 PF01344 Kelch_1: Kelch motif; 31.5 1.1E+02 0.0024 17.7 4.4 24 113-136 11-41 (47)
316 PF12276 DUF3617: Protein of u 31.4 49 0.0011 24.9 2.8 16 1-16 1-16 (162)
317 PF07995 GSDH: Glucose / Sorbo 31.4 1.7E+02 0.0037 24.9 6.4 16 121-136 315-330 (331)
318 COG3292 Predicted periplasmic 31.0 2.4E+02 0.0052 27.1 7.5 101 29-132 174-276 (671)
319 KOG4038 cGMP-phosphodiesterase 30.8 48 0.001 25.4 2.5 31 118-148 13-43 (150)
320 PRK13835 conjugal transfer pro 30.5 40 0.00088 26.3 2.1 19 1-19 1-19 (145)
321 COG2706 3-carboxymuconate cycl 30.4 1.2E+02 0.0026 27.0 5.2 55 83-140 270-332 (346)
322 PF00397 WW: WW domain; Inter 30.2 61 0.0013 18.1 2.4 17 39-55 13-29 (31)
323 PF13964 Kelch_6: Kelch motif 30.0 1E+02 0.0023 18.3 3.6 25 109-134 8-39 (50)
324 COG5633 Predicted periplasmic 29.4 42 0.0009 25.5 2.0 55 1-55 1-62 (123)
325 PF14435 SUKH-4: SUKH-4 immuni 29.4 89 0.0019 23.9 3.9 28 27-54 72-100 (179)
326 TIGR03516 ppisom_GldI peptidyl 29.3 48 0.001 26.2 2.4 21 1-21 1-21 (177)
327 KOG1538 Uncharacterized conser 29.2 1.5E+02 0.0033 29.2 6.0 74 51-126 4-78 (1081)
328 TIGR02694 arsenite_ox_S arseni 29.2 2.5E+02 0.0054 21.1 7.2 75 38-126 47-123 (129)
329 COG4257 Vgb Streptogramin lyas 29.1 2.4E+02 0.0053 24.8 6.8 78 70-151 72-153 (353)
330 PF05262 Borrelia_P83: Borreli 28.9 3.7E+02 0.0079 25.0 8.3 76 39-117 374-454 (489)
331 KOG0321 WD40 repeat-containing 28.1 2.6E+02 0.0056 27.1 7.3 99 28-130 62-174 (720)
332 PF05643 DUF799: Putative bact 28.0 38 0.00083 28.0 1.7 18 124-141 133-150 (215)
333 PLN00033 photosystem II stabil 27.8 4.4E+02 0.0096 23.5 11.7 32 108-141 333-364 (398)
334 KOG0288 WD40 repeat protein Ti 27.8 2.3E+02 0.0049 26.1 6.6 114 29-143 230-383 (459)
335 PRK13474 cytochrome b6-f compl 27.0 3.2E+02 0.0068 21.6 7.8 55 74-137 122-176 (178)
336 PRK05560 DNA gyrase subunit A; 26.9 6.1E+02 0.013 24.9 10.4 102 28-130 496-621 (805)
337 PF07437 YfaZ: YfaZ precursor; 26.8 45 0.00098 26.6 1.9 21 1-21 1-21 (180)
338 KOG0313 Microtubule binding pr 26.8 4.9E+02 0.011 23.7 10.0 71 29-99 270-342 (423)
339 KOG1897 Damage-specific DNA bi 26.7 1.6E+02 0.0034 29.9 5.8 60 70-130 268-336 (1096)
340 TIGR03511 GldH_lipo gliding mo 26.6 50 0.0011 25.8 2.1 21 1-21 4-24 (156)
341 KOG2066 Vacuolar assembly/sort 26.5 1.5E+02 0.0032 29.3 5.5 31 27-58 46-76 (846)
342 PF08139 LPAM_1: Prokaryotic m 26.1 55 0.0012 18.1 1.6 17 1-17 7-23 (25)
343 PF08662 eIF2A: Eukaryotic tra 25.9 3.2E+02 0.007 21.3 10.8 102 33-142 76-181 (194)
344 KOG1587 Cytoplasmic dynein int 25.8 5.7E+02 0.012 24.1 9.8 32 27-58 252-285 (555)
345 PF06079 Apyrase: Apyrase; In 25.8 4.1E+02 0.0088 23.1 7.6 17 38-54 62-78 (291)
346 PF11920 DUF3438: Protein of u 25.8 2.9E+02 0.0064 23.9 6.7 17 1-17 1-17 (288)
347 KOG4378 Nuclear protein COP1 [ 25.4 3.2E+02 0.007 26.0 7.2 68 25-93 216-284 (673)
348 cd00201 WW Two conserved trypt 24.8 1.2E+02 0.0026 16.1 3.1 22 35-56 7-28 (31)
349 TIGR03032 conserved hypothetic 24.1 3.6E+02 0.0079 23.9 7.1 56 86-146 190-246 (335)
350 KOG0292 Vesicle coat complex C 24.0 5.6E+02 0.012 26.2 8.8 112 30-144 21-136 (1202)
351 PF07995 GSDH: Glucose / Sorbo 23.8 2.2E+02 0.0047 24.3 5.7 59 29-93 269-329 (331)
352 smart00320 WD40 WD40 repeats. 23.6 1E+02 0.0022 14.7 2.5 16 30-45 24-39 (40)
353 cd03474 Rieske_T4moC Toluene-4 23.3 2.6E+02 0.0057 19.4 7.0 75 32-120 25-99 (108)
354 KOG1009 Chromatin assembly com 23.0 4E+02 0.0087 24.4 7.2 43 114-156 136-178 (434)
355 PRK11372 lysozyme inhibitor; P 22.8 3.1E+02 0.0067 20.0 6.4 42 1-44 3-44 (109)
356 PF03178 CPSF_A: CPSF A subuni 22.7 4.5E+02 0.0096 21.8 10.2 60 30-92 42-118 (321)
357 PF12866 DUF3823: Protein of u 22.7 26 0.00056 28.9 -0.2 28 6-33 1-28 (222)
358 PF13415 Kelch_3: Galactose ox 22.5 1.2E+02 0.0027 18.0 2.9 14 123-138 19-32 (49)
359 COG3490 Uncharacterized protei 22.5 2.1E+02 0.0046 25.3 5.3 102 40-143 201-322 (366)
360 TIGR03054 photo_alph_chp1 puta 22.2 3.7E+02 0.008 20.6 8.7 64 30-93 41-117 (135)
361 KOG1240 Protein kinase contain 22.0 8E+02 0.017 25.9 9.7 117 29-146 1109-1240(1431)
362 KOG2444 WD40 repeat protein [G 21.9 4E+02 0.0088 22.5 6.7 20 29-48 69-88 (238)
363 PRK10793 D-alanyl-D-alanine ca 21.7 1.6E+02 0.0034 26.5 4.5 23 41-63 48-70 (403)
364 PF08309 LVIVD: LVIVD repeat; 21.5 1.9E+02 0.0041 17.5 3.6 22 110-132 9-30 (42)
365 PTZ00486 apyrase Superfamily; 20.9 6E+02 0.013 22.7 8.3 10 113-122 173-182 (352)
366 PF07569 Hira: TUP1-like enhan 20.9 3.7E+02 0.0079 21.7 6.2 67 71-137 22-101 (219)
367 PRK13659 hypothetical protein; 20.6 29 0.00063 25.6 -0.3 15 39-53 87-101 (103)
368 PF06462 Hyd_WA: Propeller; I 20.6 1.8E+02 0.0039 16.4 3.7 25 124-149 2-26 (32)
369 PF05404 TRAP-delta: Transloco 20.5 3.7E+02 0.008 21.4 5.9 37 29-65 55-95 (167)
370 COG4880 Secreted protein conta 20.5 7.2E+02 0.016 23.4 12.6 63 78-145 117-181 (603)
371 COG3823 Glutamine cyclotransfe 20.4 5.4E+02 0.012 21.9 8.2 65 82-149 151-222 (262)
372 KOG4640 Anaphase-promoting com 20.4 2.7E+02 0.0058 26.9 5.8 66 72-139 33-100 (665)
373 PF07433 DUF1513: Protein of u 20.3 5.8E+02 0.013 22.2 11.2 21 35-55 133-153 (305)
374 KOG0302 Ribosome Assembly prot 20.1 5.5E+02 0.012 23.5 7.4 27 25-51 265-291 (440)
375 PF01403 Sema: Sema domain; I 20.1 1.4E+02 0.0031 26.3 3.9 22 113-135 10-31 (433)
No 1
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.88 E-value=1.1e-21 Score=169.46 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=102.0
Q ss_pred CC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC-----------CeecceEeeCCCeEEecCCCCEEEEEECCCCCe
Q 031361 26 SP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-----------PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 26 s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-----------~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
+| +.+++||+++.+|.|||+|++||+++|+++... .+.++|.+.++.+|+++. +|.|||+|++||++
T Consensus 64 sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~g~l~ald~~tG~~ 142 (394)
T PRK11138 64 HPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-KGQVYALNAEDGEV 142 (394)
T ss_pred ccEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-CCEEEEEECCCCCC
Confidence 45 478999999999999999999999999998765 344567777888888774 56999999999999
Q ss_pred eccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 94 KKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 94 ~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+|++++...+.++|++.+ +.||+++.++.+||+|++||+++|+++...
T Consensus 143 -~W~~~~~~~~~ssP~v~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 143 -AWQTKVAGEALSRPVVSD-GLVLVHTSNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred -cccccCCCceecCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeecCCC
Confidence 999999999999999996 889999999999999999999999998763
No 2
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.86 E-value=1.2e-20 Score=161.11 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=105.9
Q ss_pred CC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 26 SP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 26 s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
+| +.++.+|+++.+|.|||+|+.||+++|+++.+.++.++|.+.++.+|++.. ++.|||+|+.||++ +|+..++..+
T Consensus 60 ~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~-~g~l~ald~~tG~~-~W~~~~~~~~ 137 (377)
T TIGR03300 60 QPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTE-KGEVIALDAEDGKE-LWRAKLSSEV 137 (377)
T ss_pred ceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcC-CCEEEEEECCCCcE-eeeeccCcee
Confidence 44 578999999999999999999999999999999999999888888888875 45999999999999 9999999999
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
.++|++.+ +.||+++.++.+||+|++||+++|+++....
T Consensus 138 ~~~p~v~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 138 LSPPLVAN-GLVVVRTNDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred ecCCEEEC-CEEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence 99999986 8899999999999999999999999987553
No 3
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.81 E-value=2.6e-19 Score=160.09 Aligned_cols=119 Identities=13% Similarity=0.229 Sum_probs=98.7
Q ss_pred CCCCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-------eec-ceEeeC-CCeEEecCCCCEEEEEECCCC
Q 031361 22 SPRASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-------IYS-SFTRND-PDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 22 ~~~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-------i~s-sp~~~d-~~~~V~~~ddg~Lyald~~tG 91 (161)
..+.+| +.++.||+++.||.|||+|++||+++|++++..+ +.+ .+.+.+ +.+|++.. +|.|||+|++||
T Consensus 52 ~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~g~v~AlD~~TG 130 (488)
T cd00216 52 GQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-DGRLVALDAETG 130 (488)
T ss_pred CcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-CCeEEEEECCCC
Confidence 345667 5799999999999999999999999999988664 111 122335 66777765 569999999999
Q ss_pred CeeccccCcccc------eecceeEeeCCeEEEEee---------CCEEEEEECCCCcEEEEecCCC
Q 031361 92 KMKKPSIDVGEF------MRRMPHVWDDGALLLGHE---------KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 92 ~~~~w~~~~~~~------V~ssP~v~~dg~VyvGs~---------d~~lyalDa~TG~~~W~~~~~~ 143 (161)
++ +|++++... +.++|.+.+ +.||+|+. ++.+||||++||+++|+++...
T Consensus 131 ~~-~W~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~ 195 (488)
T cd00216 131 KQ-VWKFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTE 195 (488)
T ss_pred CE-eeeecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccC
Confidence 99 999998876 789999997 88999974 6789999999999999998853
No 4
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.81 E-value=2e-19 Score=155.53 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=100.3
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccc----
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF---- 103 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~---- 103 (161)
+.++.||+++.+|.|||+|++||+++|++++++++.++|.+.++.+|+... ++.|||+|++||++ +|+++....
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~-~g~l~ald~~tG~~-~W~~~~~~~~~~~ 195 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTS-NGMLQALNESDGAV-KWTVNLDVPSLTL 195 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECC-CCEEEEEEccCCCE-eeeecCCCCcccc
Confidence 368999999999999999999999999999999999999998888888775 45999999999999 999987643
Q ss_pred -eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 104 -MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 104 -V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
..++|++.+ +.||+++.++.++|+|++||+++|+++..
T Consensus 196 ~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~ 234 (394)
T PRK11138 196 RGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRIS 234 (394)
T ss_pred cCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccc
Confidence 247999986 78999999999999999999999998753
No 5
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.80 E-value=5.5e-19 Score=157.97 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=97.1
Q ss_pred CC-CEEEEEecCCeEEEEeCCCCceeEEEecCCC------eecceEeeCCCeEEecC--------CCCEEEEEECCCCCe
Q 031361 29 SG-DLALVATLNGTVHLVDTKRGESRWSFSMGKP------IYSSFTRNDPDFYVDVG--------EDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~-~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~------i~ssp~~~d~~~~V~~~--------ddg~Lyald~~tG~~ 93 (161)
.+ ++||+++.||.|||+|++||+++|+++++.+ +.++|.+.++.+|++.. .+|.|||+|+.||++
T Consensus 108 ~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 108 WDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred ccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 46 9999999999999999999999999999877 78899998887888753 357999999999999
Q ss_pred eccccCcc---------------------cceecceeEe-eCCeEEEEeeCC------------------EEEEEECCCC
Q 031361 94 KKPSIDVG---------------------EFMRRMPHVW-DDGALLLGHEKT------------------SVFFVDAKSG 133 (161)
Q Consensus 94 ~~w~~~~~---------------------~~V~ssP~v~-~dg~VyvGs~d~------------------~lyalDa~TG 133 (161)
+|++++. ..+.++|++. .+++||+|+.++ ++||||++||
T Consensus 188 -~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 188 -LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred -eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 9998774 2255678875 348899999775 8999999999
Q ss_pred cEEEEecCCC
Q 031361 134 GMICSHESDN 143 (161)
Q Consensus 134 ~~~W~~~~~~ 143 (161)
+++|+++...
T Consensus 267 ~~~W~~~~~~ 276 (488)
T cd00216 267 KVKWFYQTTP 276 (488)
T ss_pred CEEEEeeCCC
Confidence 9999998654
No 6
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.78 E-value=2.5e-18 Score=161.65 Aligned_cols=117 Identities=17% Similarity=0.290 Sum_probs=94.5
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc--------------------------eEeeCCCeEEe
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS--------------------------FTRNDPDFYVD 76 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss--------------------------p~~~d~~~~V~ 76 (161)
+.+| +.+|++|++|.++.|+|+|++||+++|+|+.+.++.+. |+..++.+|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~ 266 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP 266 (764)
T ss_pred ccCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEe
Confidence 4456 57999999999999999999999999999987664321 22233456776
Q ss_pred cCCCCEEEEEECCCCCeeccccCccc----------------ceecceeEeeCCeEEEEee----------CCEEEEEEC
Q 031361 77 VGEDWKLYFHRKGIGKMKKPSIDVGE----------------FMRRMPHVWDDGALLLGHE----------KTSVFFVDA 130 (161)
Q Consensus 77 ~~ddg~Lyald~~tG~~~~w~~~~~~----------------~V~ssP~v~~dg~VyvGs~----------d~~lyalDa 130 (161)
.. |++|||+|++||++ .|.|..+. .+.++|++.+ ++||+|+. +|.++|+|+
T Consensus 267 T~-Dg~LiALDA~TGk~-~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I~A~Da 343 (764)
T TIGR03074 267 TS-DARLIALDADTGKL-CEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVIRAFDV 343 (764)
T ss_pred cC-CCeEEEEECCCCCE-EEEecCCCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEEEEEEC
Confidence 65 66999999999999 88776543 2468899997 88999975 689999999
Q ss_pred CCCcEEEEecCCC
Q 031361 131 KSGGMICSHESDN 143 (161)
Q Consensus 131 ~TG~~~W~~~~~~ 143 (161)
+||+++|+|+..+
T Consensus 344 ~TGkl~W~~~~g~ 356 (764)
T TIGR03074 344 NTGALVWAWDPGN 356 (764)
T ss_pred CCCcEeeEEecCC
Confidence 9999999999753
No 7
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.78 E-value=2.9e-18 Score=155.38 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=97.5
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCee-----------cceEeeCCCeEEecCCCCEEEEEECCCC
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY-----------SSFTRNDPDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~-----------ssp~~~d~~~~V~~~ddg~Lyald~~tG 91 (161)
+.+| +.+++||+++.+|.|||+|++||+++|+++...+.. ..+++.++.+|+... +++|+|+|++||
T Consensus 62 ~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg~l~ALDa~TG 140 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DARLVALDAKTG 140 (527)
T ss_pred ccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-CCEEEEEECCCC
Confidence 4566 579999999999999999999999999998754311 223455667787765 559999999999
Q ss_pred CeeccccCccc-----ceecceeEeeCCeEEEEee------CCEEEEEECCCCcEEEEecCCCC
Q 031361 92 KMKKPSIDVGE-----FMRRMPHVWDDGALLLGHE------KTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 92 ~~~~w~~~~~~-----~V~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
++ .|++.+.+ .+.++|++.+ ++||+|+. ++.++|+|++||+++|++.+...
T Consensus 141 k~-~W~~~~~~~~~~~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~ 202 (527)
T TIGR03075 141 KV-VWSKKNGDYKAGYTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG 202 (527)
T ss_pred CE-EeecccccccccccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence 99 99887653 4778999997 88999975 68999999999999999998654
No 8
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.77 E-value=5.5e-18 Score=144.72 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=99.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce---
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM--- 104 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V--- 104 (161)
+.++.+|+++.||.|||+|+.||+++|++++++++.++|.+.++.+|+.+. +|.||++|+++|++ +|+++.....
T Consensus 103 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~-~g~l~a~d~~tG~~-~W~~~~~~~~~~~ 180 (377)
T TIGR03300 103 ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTN-DGRLTALDAATGER-LWTYSRVTPALTL 180 (377)
T ss_pred EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECC-CCeEEEEEcCCCce-eeEEccCCCceee
Confidence 468999999999999999999999999999999999999888777887764 56999999999999 9988776532
Q ss_pred --ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 105 --RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 105 --~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.++|++.+ +.+|+|+.++.++++|++||+++|+++..
T Consensus 181 ~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 181 RGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred cCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 36888886 78999999999999999999999997643
No 9
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.74 E-value=8.5e-17 Score=127.43 Aligned_cols=112 Identities=23% Similarity=0.332 Sum_probs=94.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc-Ccc-----c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI-DVG-----E 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~-~~~-----~ 102 (161)
.++.+|+++.+|.|||+|+.||+++|+++.++++...|...++.+|+...++ .||++|..||++ .|+. ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~-~l~~~d~~tG~~-~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDG-SLYALDAKTGKV-LWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTS-EEEEEETTTSCE-EEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccccccee-eeEecccCCcce-eeeecccccccccc
Confidence 7999999999999999999999999999999998888888888888888544 999999999999 8884 333 1
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
....+|.+.+ +.+|++..++.++++|++||+++|++....
T Consensus 113 ~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 113 RSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp B--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ccccCceEec-CEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 2334555664 789999999999999999999999998843
No 10
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.70 E-value=3.2e-16 Score=134.65 Aligned_cols=114 Identities=22% Similarity=0.364 Sum_probs=97.4
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC--CeecceE-eeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-c
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFT-RNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-F 103 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--~i~ssp~-~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~ 103 (161)
..+++||+++.||.|+|+|+.+|+.+|++.+.. ...++|. ..++.+|++..++ ++||+|+++|.+ +|.+++.. +
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~-~W~~~~~~~~ 143 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG-KLYALDASTGTL-VWSRNVGGSP 143 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc-eEEEEECCCCcE-EEEEecCCCe
Confidence 479999999999999999999999999999875 4444454 4578889888655 999999999999 99999998 4
Q ss_pred -eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 104 -MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 104 -V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
+.+.|++. |+.||+++.++++||||+.||+++|+++....
T Consensus 144 ~~~~~~v~~-~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~ 184 (370)
T COG1520 144 YYASPPVVG-DGTVYVGTDDGHLYALNADTGTLKWTYETPAP 184 (370)
T ss_pred EEecCcEEc-CcEEEEecCCCeEEEEEccCCcEEEEEecCCc
Confidence 44455555 59999999999999999999999999988763
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.68 E-value=8.5e-16 Score=121.67 Aligned_cols=102 Identities=25% Similarity=0.400 Sum_probs=84.8
Q ss_pred cCCeEEEEeCCCCceeEEEecCCCeecce---EeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCC
Q 031361 38 LNGTVHLVDTKRGESRWSFSMGKPIYSSF---TRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDG 114 (161)
Q Consensus 38 ~DG~lyAvd~~tG~~~W~f~t~~~i~ssp---~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg 114 (161)
.+|.|+|+|+.+|+++|++..+.++.+.+ ...++.+|+.. .++.||++|+.||++ .|+++..+.+...|.+.+ +
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~-~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-GDGNLYALDAKTGKV-LWRFDLPGPISGAPVVDG-G 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-TTSEEEEEETTTSEE-EEEEECSSCGGSGEEEET-T
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-CCCEEEEEECCCCCE-EEEeeccccccceeeecc-c
Confidence 48999999999999999998854444333 33566677774 566999999999999 999999999999997775 8
Q ss_pred eEEEEeeCCEEEEEECCCCcEEEEe-cCC
Q 031361 115 ALLLGHEKTSVFFVDAKSGGMICSH-ESD 142 (161)
Q Consensus 115 ~VyvGs~d~~lyalDa~TG~~~W~~-~~~ 142 (161)
.||+++.++.+|++|++||+++|+. ...
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred ccccccceeeeEecccCCcceeeeecccc
Confidence 8999999999999999999999994 554
No 12
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.67 E-value=6.6e-16 Score=140.03 Aligned_cols=116 Identities=13% Similarity=0.075 Sum_probs=93.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC-----CeecceEeeCCCeEEecC-----CCCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-----PIYSSFTRNDPDFYVDVG-----EDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-----~i~ssp~~~d~~~~V~~~-----ddg~Lyald~~tG~~~~w~ 97 (161)
+.+++||+++.||.|+|+|++||+++|+++... .+.++|.+.++.+|++.. .+|.|+|+|++||++ +|+
T Consensus 118 v~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~-lW~ 196 (527)
T TIGR03075 118 LYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL-VWR 196 (527)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce-eEe
Confidence 467999999999999999999999999998642 467889888888888753 257999999999999 887
Q ss_pred cCccc--------------------------------ceecceeEee-CCeEEEEeeC-----C-----------EEEEE
Q 031361 98 IDVGE--------------------------------FMRRMPHVWD-DGALLLGHEK-----T-----------SVFFV 128 (161)
Q Consensus 98 ~~~~~--------------------------------~V~ssP~v~~-dg~VyvGs~d-----~-----------~lyal 128 (161)
+.+.. .+..+|.+.. .+.||+|+.+ + +++||
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 75531 2333445543 3789999833 2 89999
Q ss_pred ECCCCcEEEEecCCCC
Q 031361 129 DAKSGGMICSHESDNS 144 (161)
Q Consensus 129 Da~TG~~~W~~~~~~~ 144 (161)
|++|||++|.|+...|
T Consensus 277 d~~TG~~~W~~Q~~~~ 292 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPH 292 (527)
T ss_pred ccccCCEEEeeeCCCC
Confidence 9999999999998554
No 13
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.67 E-value=8.9e-16 Score=131.92 Aligned_cols=110 Identities=21% Similarity=0.332 Sum_probs=94.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC--CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc----c
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV----G 101 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~--~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~----~ 101 (161)
..+|++|+++.||.+||+|.++|+++|+++... .+.+.+...++.+|+.. +++++||+|+.||++ +|.++. .
T Consensus 109 ~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~-~W~~~~~~~~~ 186 (370)
T COG1520 109 GSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTL-KWTYETPAPLS 186 (370)
T ss_pred EeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcE-EEEEecCCccc
Confidence 357999999999999999999999999999988 34455556667777776 677999999999999 998665 4
Q ss_pred cceecceeEeeCCeEEEEee--CCEEEEEECCCCcEEEEec
Q 031361 102 EFMRRMPHVWDDGALLLGHE--KTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~--d~~lyalDa~TG~~~W~~~ 140 (161)
..+.++|.+.+ +.||+++. ++.+||+|+++|..+|+.+
T Consensus 187 ~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 187 LSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cccccCceeec-ceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 56888899775 88999998 8899999999999999954
No 14
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.63 E-value=5.8e-15 Score=139.09 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=90.6
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCe----------------ecceEeeCCCeEEecC--C-------CCE
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI----------------YSSFTRNDPDFYVDVG--E-------DWK 82 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i----------------~ssp~~~d~~~~V~~~--d-------dg~ 82 (161)
+.++.||+++.||+|||+|++||+++|+|.+++.+ .++|.+.++.+||+.. | +|.
T Consensus 258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 258 DCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred ccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 56889999999999999999999999999876543 4778888888998753 1 579
Q ss_pred EEEEECCCCCeeccccCcccceecc------------e------eEe-eCCeEEEEe------------------eCCEE
Q 031361 83 LYFHRKGIGKMKKPSIDVGEFMRRM------------P------HVW-DDGALLLGH------------------EKTSV 125 (161)
Q Consensus 83 Lyald~~tG~~~~w~~~~~~~V~ss------------P------~v~-~dg~VyvGs------------------~d~~l 125 (161)
++|+|++||++ +|++.+.++.... | .++ +.+.||++. ..+++
T Consensus 338 I~A~Da~TGkl-~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 338 IRAFDVNTGAL-VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEECCCCcE-eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence 99999999999 9999875432221 1 111 125678754 34789
Q ss_pred EEEECCCCcEEEEecCCCC
Q 031361 126 FFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 126 yalDa~TG~~~W~~~~~~~ 144 (161)
+|||++|||++|.|++..|
T Consensus 417 vALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHH 435 (764)
T ss_pred EEEeCCCCceEEEecccCC
Confidence 9999999999999998554
No 15
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=2.9e-13 Score=114.24 Aligned_cols=119 Identities=21% Similarity=0.233 Sum_probs=104.9
Q ss_pred CCCCC--C---CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc
Q 031361 23 PRASP--E---SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 23 ~~~s~--~---~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~ 97 (161)
+++|| + ...+||+||..|.+-|+|+.+|+++|+-..+..|..++.+.++-+.++|..+ .||.++.+||.+ .|+
T Consensus 11 VDaspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g-~lYfl~~~tGs~-~w~ 88 (354)
T KOG4649|consen 11 VDASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSG-GLYFLCVKTGSQ-IWN 88 (354)
T ss_pred ccCCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccC-cEEEEEecchhh-eee
Confidence 35666 2 2479999999999999999999999999999999999888777788899866 899999999999 999
Q ss_pred cCcccceecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 98 IDVGEFMRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 98 ~~~~~~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
|.+-+.|..+|..+-+ +.+|.||.|+++||||+++=+-+|+-+-++
T Consensus 89 f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 89 FVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred eeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 9999999999997433 789999999999999999999999966443
No 16
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.16 E-value=2e-10 Score=97.29 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=104.5
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecC-CCCEEEEEECCCCCeeccccCcc
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVG-EDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~-ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
|-|+ +.+|.|.+|-..|.||-++.+||+..|.|.+-+.+...++..-....|||+ .|+++||+|.++=+- .|+.+.+
T Consensus 56 E~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-Vykskcg 134 (354)
T KOG4649|consen 56 ECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCG 134 (354)
T ss_pred eeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccC
Confidence 5566 789999999999999999999999999999999999988876445555554 477999999998887 8899999
Q ss_pred cceecceeEee-CCeEEEEeeCCEEEEEECCCC--cEEEEecCCC
Q 031361 102 EFMRRMPHVWD-DGALLLGHEKTSVFFVDAKSG--GMICSHESDN 143 (161)
Q Consensus 102 ~~V~ssP~v~~-dg~VyvGs~d~~lyalDa~TG--~~~W~~~~~~ 143 (161)
+-+-.+|++.. ++.+|+.+..|.+.|+..+++ ...|.+....
T Consensus 135 G~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~ 179 (354)
T KOG4649|consen 135 GGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFG 179 (354)
T ss_pred CceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCC
Confidence 99999999976 688999999999999999999 8899887544
No 17
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=99.03 E-value=5.5e-10 Score=67.51 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=34.5
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceE
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFT 67 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~ 67 (161)
|.||+++.||.|||+|++||+.+|+|+++.++.++|.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~p~ 37 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSSPI 37 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSCBE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccCcC
Confidence 6899999999999999999999999999999888774
No 18
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=98.92 E-value=2.9e-09 Score=100.64 Aligned_cols=111 Identities=22% Similarity=0.347 Sum_probs=94.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceeccee
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPH 109 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~ 109 (161)
+...++.|.| .++|.+.++|...|+.. +.|+.++|.....-.+.-.-.+|+||.+-- ...+.+.+|++.+.+..+|+
T Consensus 27 e~~~~~stid-~l~a~s~~~g~~~~~l~-~~pvv~~~~~~~~~~fl~~p~dgsly~l~~-~~sL~Klpftipelv~~~pc 103 (903)
T KOG1027|consen 27 ENLLLVSTID-SLHAPSSETGFIKWTLS-DDPVVASPDGVLQPAFLPDPRDGSLYTLGN-NLSLTKLPFTIPELVNASPC 103 (903)
T ss_pred cccccccccc-cccCccccccceeeeec-cCccccCCccccccccCCCccccceeeccC-CCccccCCccchhhhccCcc
Confidence 4888999999 99999999999999984 556776676554444444446789998865 45666999999999999999
Q ss_pred EeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 110 VWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 110 v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
-..||.+|.|++++..|.||++||+..|+|.+..
T Consensus 104 rssdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~ 137 (903)
T KOG1027|consen 104 RSSDGILYSGSKQDIWYLVDPKTGEIDYTFNTAE 137 (903)
T ss_pred cCCCCeEEecccccceEEecCCccceeEEEecCC
Confidence 9888999999999999999999999999999876
No 19
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=98.87 E-value=2e-09 Score=65.38 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=29.0
Q ss_pred CCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCC
Q 031361 91 GKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 91 G~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~T 132 (161)
|++ +|+++++..+.++|++.+ +.||+|+.|+++||||++|
T Consensus 1 G~~-~W~~~~~~~~~~~~~v~~-g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKV-LWSYDTGGPIWSSPAVAG-GRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-E-EEEEE-SS---S--EECT-SEEEEE-TTSEEEEEETT-
T ss_pred Cce-eEEEECCCCcCcCCEEEC-CEEEEEcCCCEEEEEeCCC
Confidence 567 999999999999999986 8999999999999999986
No 20
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=5.2e-08 Score=90.02 Aligned_cols=120 Identities=18% Similarity=0.269 Sum_probs=86.0
Q ss_pred CCCC-CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe------e------CCC------eEEecCCCCEEE
Q 031361 24 RASP-ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR------N------DPD------FYVDVGEDWKLY 84 (161)
Q Consensus 24 ~~s~-~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~------~------d~~------~~V~~~ddg~Ly 84 (161)
|.+| ..+|++|+.+.--+++|+|+.||+++|+|+..-+..-.++. + +.. +|.... |.+|.
T Consensus 207 e~tPLkvgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~-DarlI 285 (773)
T COG4993 207 EVTPLKVGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTA-DARLI 285 (773)
T ss_pred cccceEECCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecC-CceEE
Confidence 5566 68999999999999999999999999999875443322221 1 222 565554 55999
Q ss_pred EEECCCCCeeccccCccc---------------ceeccee-EeeCCeEEEEeeC---------CEEEEEECCCCcEEEEe
Q 031361 85 FHRKGIGKMKKPSIDVGE---------------FMRRMPH-VWDDGALLLGHEK---------TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 85 ald~~tG~~~~w~~~~~~---------------~V~ssP~-v~~dg~VyvGs~d---------~~lyalDa~TG~~~W~~ 139 (161)
|+|++|||+ -|.|..++ ++.+||- +...+.|+-|+-+ +-+.+.|..||+++|.+
T Consensus 286 ALdA~tGkv-c~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~ 364 (773)
T COG4993 286 ALDADTGKV-CWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAG 364 (773)
T ss_pred EEeCCCCcE-eheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEcc
Confidence 999999999 88886553 3444444 4443433444422 35789999999999999
Q ss_pred cCCCCC
Q 031361 140 ESDNSA 145 (161)
Q Consensus 140 ~~~~~~ 145 (161)
+..+.-
T Consensus 365 D~gnpD 370 (773)
T COG4993 365 DPGNPD 370 (773)
T ss_pred CCCCCC
Confidence 987653
No 21
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=98.72 E-value=2.2e-08 Score=60.45 Aligned_cols=33 Identities=18% Similarity=0.439 Sum_probs=29.7
Q ss_pred CeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 114 GALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 114 g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
|+||+++.++.|||||++||+++|+|+......
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~ 33 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVD 33 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGG
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCc
Confidence 469999999999999999999999999876543
No 22
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=98.67 E-value=4.4e-08 Score=59.41 Aligned_cols=40 Identities=35% Similarity=0.589 Sum_probs=28.0
Q ss_pred CceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCC
Q 031361 50 GESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGI 90 (161)
Q Consensus 50 G~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~t 90 (161)
|+++|++++++++.++|++.++.+|+... +|+|||+|++|
T Consensus 1 G~~~W~~~~~~~~~~~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS---S--EECTSEEEEE-T-TSEEEEEETT-
T ss_pred CceeEEEECCCCcCcCCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 89999999999999999998888998886 56999999875
No 23
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=98.66 E-value=6.1e-08 Score=55.84 Aligned_cols=33 Identities=27% Similarity=0.609 Sum_probs=28.9
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
|.+..|+.+|+++.++.|||+|++||+++|+++
T Consensus 1 ~~~~~~~~v~~~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred CcEEECCEEEEEcCCCEEEEEEcccCcEEEEcC
Confidence 455556899999999999999999999999974
No 24
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=3.1e-07 Score=84.98 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=81.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc----------------eEeeCCCeEEecC---------CCCEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS----------------FTRNDPDFYVDVG---------EDWKL 83 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss----------------p~~~d~~~~V~~~---------ddg~L 83 (161)
-...||..+.|.+|-|+|++||++.|+|..++.++-. |.+....++++.. ..|-+
T Consensus 271 c~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVi 350 (773)
T COG4993 271 CPRRIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVI 350 (773)
T ss_pred CceeEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccc
Confidence 3456999999999999999999999999876653321 1221222222221 12456
Q ss_pred EEEECCCCCeeccccCcccceeccee------------E-----ee--CCeEEEEeeC------------------CEEE
Q 031361 84 YFHRKGIGKMKKPSIDVGEFMRRMPH------------V-----WD--DGALLLGHEK------------------TSVF 126 (161)
Q Consensus 84 yald~~tG~~~~w~~~~~~~V~ssP~------------v-----~~--dg~VyvGs~d------------------~~ly 126 (161)
.++|..+|++ .|.++.+.+-..+|. . +| -+.||++-.+ .++.
T Consensus 351 r~fdv~tG~l-~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssiv 429 (773)
T COG4993 351 RGFDVLTGKL-TWAGDPGNPDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIV 429 (773)
T ss_pred cccccccCce-EEccCCCCCCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeE
Confidence 7789999999 999988766544443 1 11 2679987544 5899
Q ss_pred EEECCCCcEEEEecCCCC
Q 031361 127 FVDAKSGGMICSHESDNS 144 (161)
Q Consensus 127 alDa~TG~~~W~~~~~~~ 144 (161)
|+|+.||+++|.|++..|
T Consensus 430 AlD~~TG~~kW~yQtvhh 447 (773)
T COG4993 430 ALDATTGKLKWVYQTVHH 447 (773)
T ss_pred EecCCCcceeeeeeccCc
Confidence 999999999999998765
No 25
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=98.49 E-value=2.2e-07 Score=53.50 Aligned_cols=29 Identities=31% Similarity=0.601 Sum_probs=26.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS 57 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~ 57 (161)
.++.+|+++.||.|||+|+++|+++|+++
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEcC
Confidence 46799999999999999999999999974
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.18 E-value=8.8e-05 Score=59.12 Aligned_cols=108 Identities=14% Similarity=0.196 Sum_probs=74.9
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
++++.++.||.|+.+|..+|+.+.+++....+.+ .... |+. +|+-+.+++.++.+|..+|+. ...+..+..+. ..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~-l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~-~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRG-ITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGPDPE-LF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCc-eEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCCCcc-EE
Confidence 5667788999999999999999999986554432 2332 443 556666677999999999987 33333332222 22
Q ss_pred eEeeC-CeEEEEe-eCCEEEEEECCCCcEEEEecC
Q 031361 109 HVWDD-GALLLGH-EKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 109 ~v~~d-g~VyvGs-~d~~lyalDa~TG~~~W~~~~ 141 (161)
.+..| +.+|+.+ .++.++.+|.++++.+.++..
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 33333 4477654 578999999999999888764
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.97 E-value=0.00027 Score=53.86 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=74.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcc-cceec
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRR 106 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~s 106 (161)
+..++.++.||.|+..|..+++++.+++... ++.. .... ++..++.+..++.++.+|..+++. .-.++.. +.+.+
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~ 224 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS-VAFSPDGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHENGVNS 224 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecCccccce-EEECCCcCEEEEecCCCcEEEEECCCCce-ecchhhcCCceEE
Confidence 5666777779999999999999999998654 3433 2332 343454555577999999998877 4444222 23332
Q ss_pred ceeEeeCCeEEE-EeeCCEEEEEECCCCcEEEEec
Q 031361 107 MPHVWDDGALLL-GHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 107 sP~v~~dg~Vyv-Gs~d~~lyalDa~TG~~~W~~~ 140 (161)
.....++.+++ ++.++.++..|..+++....+.
T Consensus 225 -~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 225 -VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred -EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 33333344554 5559999999999999998887
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.97 E-value=0.00042 Score=52.81 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=77.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~s 106 (161)
.+..+++++.||.++..|..+++...++.... ++..-....++..++.+..++.++.+|..+++. ...+.... .+.+
T Consensus 62 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~ 140 (289)
T cd00200 62 DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNS 140 (289)
T ss_pred CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEE
Confidence 34689999999999999999999999987544 444322222445666666678999999988877 44444222 2322
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
--...++..++.|+.++.++..|..+++.+..+...
T Consensus 141 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 176 (289)
T cd00200 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176 (289)
T ss_pred EEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence 222222244555666999999999999999888743
No 29
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.74 E-value=0.00063 Score=59.56 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=77.3
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.||.. .+|.|.-+|..|.+++-++++++..+...... |+. +||-+ .||.+..+|..++++ .-..+++..-.+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~~-v~~i~~G~~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGKV-VATIKVGGNPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSSE-EEEEE-SSEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCcccE-EEEEecCCCcce
Confidence 45666655 58999999999999999999988777655544 443 66655 467999999999998 666777755444
Q ss_pred ceeEeeCCeEEEEe-eCCEEEEEECCCCcEEEEecCCCCC
Q 031361 107 MPHVWDDGALLLGH-EKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 107 sP~v~~dg~VyvGs-~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
--+..++..+|++. ..+.+..+|++|.+++.+..+....
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeeccccccc
Confidence 33333334577776 6889999999999999998776543
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.65 E-value=0.00038 Score=58.73 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=92.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCe-EEecCCCCEEEEEECCCCCeeccccCcc----c
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDF-YVDVGEDWKLYFHRKGIGKMKKPSIDVG----E 102 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~-~V~~~ddg~Lyald~~tG~~~~w~~~~~----~ 102 (161)
+.+-.++.||.||+++-.|.+.|++-=-+ .+.||.+.....|+.- .+++. |+.|.-+|..||++ .-.++-. .
T Consensus 153 v~~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l-~stlrLlDk~tGkl-L~sYkGhkn~ey 229 (307)
T KOG0316|consen 153 VAEHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSL-DSTLRLLDKETGKL-LKSYKGHKNMEY 229 (307)
T ss_pred ecccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeec-cceeeecccchhHH-HHHhccccccee
Confidence 36777889999999999999999875443 5677776555556654 45555 55999999999998 4444322 2
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCC--CCcCCCCCceeee
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSA--STLGSGLPMKKSF 158 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~--~~~~~~~~~~~~~ 158 (161)
.+.+.-.-++ -.|+-||+||.+|.-|..+++++-++...... ..+.-|..|.+-+
T Consensus 230 kldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 230 KLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFI 286 (307)
T ss_pred eeeeeecccc-eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcccee
Confidence 3555544454 77999999999999999999999999877665 3444455554443
No 31
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.57 E-value=0.005 Score=48.93 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=68.6
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCC-CEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGED-WKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~dd-g~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.+|+++ .|+.|+.+|..+++.+.+++.+....+-....|+..++.+.++ ..++.+|..+++. ......+... .
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-~ 160 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVLVDQRP-R 160 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEEcCCCc-c
Confidence 455677664 5899999999999999988765443331112355555544443 3466678887766 3222222211 1
Q ss_pred ceeEeeCCe-EEEEe-eCCEEEEEECCCCcEEEEec
Q 031361 107 MPHVWDDGA-LLLGH-EKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 107 sP~v~~dg~-VyvGs-~d~~lyalDa~TG~~~W~~~ 140 (161)
+.....|+. +++++ .++.++.+|.++|+.+-++.
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 223343444 65665 58999999999999876654
No 32
>PTZ00421 coronin; Provisional
Probab=97.35 E-value=0.01 Score=54.03 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=73.5
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCc-------eeEEEecCC-CeecceEee-C-CCeEEecCCCCEEEEEECCCCCeecc
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGE-------SRWSFSMGK-PIYSSFTRN-D-PDFYVDVGEDWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~-------~~W~f~t~~-~i~ssp~~~-d-~~~~V~~~ddg~Lyald~~tG~~~~w 96 (161)
|..+..++.|+.||+|+..|..++. ++-++.... ++. ..... + +..++-++.|+.+...|..+|+. .-
T Consensus 85 P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~ 162 (493)
T PTZ00421 85 PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDVERGKA-VE 162 (493)
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EE
Confidence 4456789999999999999987763 333343221 222 12222 2 24555556788999999998876 33
Q ss_pred ccCcc-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 97 SIDVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 97 ~~~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.+... +.|.+--...+...++.|+.|+++...|+++|+.+.++...
T Consensus 163 ~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 163 VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 33322 23433222233345778999999999999999998877543
No 33
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=97.22 E-value=0.0042 Score=53.14 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=69.2
Q ss_pred cCCeEEEEeCCCCceeEEEecCCC-------------eecceEeeCCCeEE-------------e-c----CCCCEEEEE
Q 031361 38 LNGTVHLVDTKRGESRWSFSMGKP-------------IYSSFTRNDPDFYV-------------D-V----GEDWKLYFH 86 (161)
Q Consensus 38 ~DG~lyAvd~~tG~~~W~f~t~~~-------------i~ssp~~~d~~~~V-------------~-~----~ddg~Lyal 86 (161)
-.|.++.+|. +.+++|++....+ .+.--...+++..| + + .-|+.++-+
T Consensus 23 g~G~~~~lD~-~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~Ei 101 (299)
T PF14269_consen 23 GYGSYVILDS-SYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEI 101 (299)
T ss_pred ccceEEEECC-CCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEe
Confidence 3477999999 6999999988772 33222223444444 0 1 124578889
Q ss_pred ECCCCCeeccccCcccceecceeE---------------------------eeCCeEEEEeeC-CEEEEEECCCCcEEEE
Q 031361 87 RKGIGKMKKPSIDVGEFMRRMPHV---------------------------WDDGALLLGHEK-TSVFFVDAKSGGMICS 138 (161)
Q Consensus 87 d~~tG~~~~w~~~~~~~V~ssP~v---------------------------~~dg~VyvGs~d-~~lyalDa~TG~~~W~ 138 (161)
|..||++ .|.+.+-+-+...+.. .++|.+++.++. ..+|.||++||+++|+
T Consensus 102 Di~Tgev-lfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~ 180 (299)
T PF14269_consen 102 DIETGEV-LFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWR 180 (299)
T ss_pred ccCCCCE-EEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEE
Confidence 9999999 8887766544322211 123556676644 4899999999999999
Q ss_pred ecCC
Q 031361 139 HESD 142 (161)
Q Consensus 139 ~~~~ 142 (161)
....
T Consensus 181 lgG~ 184 (299)
T PF14269_consen 181 LGGK 184 (299)
T ss_pred eCCC
Confidence 9765
No 34
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.0041 Score=53.73 Aligned_cols=103 Identities=16% Similarity=0.223 Sum_probs=80.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
...+.+++++=||.|.-.|..+-+++=+|+.+.|+....-+.+...++++.|+ .+..+|..+|.. ----+=.+.|.+-
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg-~vr~~Dln~~~~-~~igth~~~i~ci 100 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDG-QVRRYDLNTGNE-DQIGTHDEGIRCI 100 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCc-eEEEEEecCCcc-eeeccCCCceEEE
Confidence 45688899999999999999999999999999999987666566788888755 999999888876 2111222345554
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~T 132 (161)
-....++.|+-||||.++-..|+++
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccc
Confidence 4444457799999999999999984
No 35
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.15 E-value=0.01 Score=52.12 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=72.3
Q ss_pred CCCCCCEEEEEecCCeEEEEe-----CCCCceeEEEecCCCe-------ecce-Eee--CCCeEEecC---------CCC
Q 031361 26 SPESGDLALVATLNGTVHLVD-----TKRGESRWSFSMGKPI-------YSSF-TRN--DPDFYVDVG---------EDW 81 (161)
Q Consensus 26 s~~~~~~V~vgs~DG~lyAvd-----~~tG~~~W~f~t~~~i-------~ssp-~~~--d~~~~V~~~---------ddg 81 (161)
++..+..+|+..+ |+||.+| .... ..|..-+.+.. --.+ +.. .+.+||-.. .+.
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceec-ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 4445666666665 9999999 5554 44554332211 1111 222 235777432 124
Q ss_pred EEEEEECCCCCeeccccCcccceecceeEeeCC-eEEEEe-eCCEEEEEECCCCcEEEEecC
Q 031361 82 KLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDG-ALLLGH-EKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 82 ~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg-~VyvGs-~d~~lyalDa~TG~~~W~~~~ 141 (161)
++..+|..|++. .-++.+++.+.+--+.-|+. .+|+-+ .++.+..+|+++||.+.+...
T Consensus 280 ~V~ViD~~t~kv-i~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 280 FLFVVDAKTGKR-LRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred EEEEEECCCCeE-EEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 899999999999 77777777665544444434 677777 467799999999999999833
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.14 E-value=0.012 Score=51.88 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=78.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe-cCCCee---cceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIY---SSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~-t~~~i~---ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.+.++-.|..+|.|.-.+..+|..+|++. ..+.|. =+|.+ ..+..+.+||+++.....++.+.+....-...+
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a---~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA---HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPC 193 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccc---cEEEeecCCCcEEEEECCCcceeeEecCCCCCc
Confidence 45566678999999999999999999996 333332 33322 445555578899999888754423333322233
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.+--++-+.+++..|..|+++.+-|++||.+.-+.+..+
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence 333333333678999999999999999999999988544
No 37
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.98 E-value=0.015 Score=49.66 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=86.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.+..++-.+.|++|+.-|.+||+..=++.+..++.+--...|++++.- .+++.+-.+|+++=.+ .-.+++..-|.++-
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~-lKs~k~P~nV~SAS 231 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGL-LKSYKMPCNVESAS 231 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEE-ecCceeEEeccccccc-eeeccCcccccccc
Confidence 456666669999999999999999999999998887555556655433 3566888899988777 66788888888887
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
+.-+.+..+.|..|..+|..|-.||+.+=.|
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 7665454446899999999999999998876
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.95 E-value=0.023 Score=53.85 Aligned_cols=105 Identities=14% Similarity=0.210 Sum_probs=74.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEee--CCCeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
.+..+..++.||.|+..|..+++.+.+++.. ++|.+ .... +++.++-++.|+.+...|..+|.. .-.+.....+.
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~-l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~~~v~ 621 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWS-IDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTKANIC 621 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEE-EEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecCCCeE
Confidence 4678889999999999999999999998653 34443 2332 456677777788999999988866 33333333333
Q ss_pred cceeEeeC-CeEEEEeeCCEEEEEECCCCcE
Q 031361 106 RMPHVWDD-GALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 106 ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~ 135 (161)
+.-....+ ..+.+|+.|+.++..|.++++.
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKL 652 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 33222222 4567899999999999988763
No 39
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=96.85 E-value=0.0075 Score=52.35 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=51.7
Q ss_pred CCEEEEEecCCeEEEE-----eCCCCceeEEEecCCC---------------ee---------------cceEee----C
Q 031361 30 GDLALVATLNGTVHLV-----DTKRGESRWSFSMGKP---------------IY---------------SSFTRN----D 70 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAv-----d~~tG~~~W~f~t~~~---------------i~---------------ssp~~~----d 70 (161)
+..++||+-||.|||+ |.++|++.|.|-...- +. .+|.+. +
T Consensus 13 g~~~~vGANDGmLHaF~~~~~d~~~g~E~~a~iP~~~~~~~~~~~~~~~~~~l~~l~~~~y~~h~y~vDG~~~~~d~~~~ 92 (335)
T PF05567_consen 13 GAYLAVGANDGMLHAFNANDGDGRTGEEKFAFIPGELLRELLAAQPSAVLPNLKNLTDPDYSGHRYYVDGSPTVGDVDTG 92 (335)
T ss_dssp -SHHHEE-STT-EEEE---ESSS----EEEEE--------------HHHHCH-----------HHHHHH---EEEEEEET
T ss_pred CCeeEEEccCceEEEEEecCCCCccccceEEEcCCccccccchhhhhhhhhhhhhhccCCCcCcceeecCCeEEEEeecC
Confidence 3355689999999999 4456799999965210 00 111110 1
Q ss_pred C---CeEEecC-C-CCEEEEEECC-----CCC--eecc-ccC---------cccceecceeEee--CC--eEEEEee---
Q 031361 71 P---DFYVDVG-E-DWKLYFHRKG-----IGK--MKKP-SID---------VGEFMRRMPHVWD--DG--ALLLGHE--- 121 (161)
Q Consensus 71 ~---~~~V~~~-d-dg~Lyald~~-----tG~--~~~w-~~~---------~~~~V~ssP~v~~--dg--~VyvGs~--- 121 (161)
+ .+.|+.. . +..+||||.. +.. ..+| ... ++ +..+.|.+.. ++ .++||+-
T Consensus 93 ~~wktilvggmg~GG~~~yALDVT~~d~~~p~~~~l~~~~~~~~~~~~~~~LG-~t~s~P~I~~~~~g~w~~i~g~Gy~~ 171 (335)
T PF05567_consen 93 GSWKTILVGGMGRGGRGYYALDVTNPDSDDPTSPSLLDVKNDGSDGADDSDLG-QTWSKPQIAKVKNGKWVVIFGSGYNS 171 (335)
T ss_dssp TEEEEEEEEE-TTS-SEEEEEE-S-----SCCC-EEETT-TT------------B--S--EEEEETTSSEEEEEE--BS-
T ss_pred CCceEEEEeCCCCCcceEEEEecccccccCCCccccEecccCccccccccccC-ccccCCEEEEccCCcEEEEEccCCCC
Confidence 1 2233322 2 3479999987 332 1122 211 22 4567888743 33 3667642
Q ss_pred --------CCEEEEEECCC-CcEEEEecCCCCC
Q 031361 122 --------KTSVFFVDAKS-GGMICSHESDNSA 145 (161)
Q Consensus 122 --------d~~lyalDa~T-G~~~W~~~~~~~~ 145 (161)
...||.+|++| |+++|++......
T Consensus 172 ~~~~~~~~~~~lyi~d~~t~G~l~~~i~~~~~~ 204 (335)
T PF05567_consen 172 DDVDSSSGGAALYILDADTTGALIKKIDVPGGS 204 (335)
T ss_dssp TT-------EEEEEEETTT---EEEEEEE--ST
T ss_pred CcccccCCCcEEEEEECCCCCceEEEEecCCCC
Confidence 36899999999 9999999865543
No 40
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.83 E-value=0.017 Score=52.26 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=63.0
Q ss_pred CCCCEEEEEe----cCCeEEEEeCCCCceeEEEecCCCeecc-eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc
Q 031361 28 ESGDLALVAT----LNGTVHLVDTKRGESRWSFSMGKPIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 28 ~~~~~V~vgs----~DG~lyAvd~~tG~~~W~f~t~~~i~ss-p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
..+++.++.. ..+..|++|. +|.++|.+.....-... -...++.+++... ..++.+|. .|++ .|.+++.+
T Consensus 112 ~~~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v-~~~~~l~~ 186 (477)
T PF05935_consen 112 MEDGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKV-IWEYDLPG 186 (477)
T ss_dssp -TT-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--E-EEEEE--T
T ss_pred cCCcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcC-CCCE-EEeeecCC
Confidence 4555555555 5889999999 69999999776544333 2344566666554 58888886 5887 77777665
Q ss_pred ce---ecceeEeeCCe-EEEEee-------------CCEEEEEECCCCcEEEEecCCCCCC
Q 031361 103 FM---RRMPHVWDDGA-LLLGHE-------------KTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 103 ~V---~ssP~v~~dg~-VyvGs~-------------d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
.. ...=....+|. ++.++. +..++-|| .||+++|.++..+++.
T Consensus 187 ~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld 246 (477)
T PF05935_consen 187 GYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLD 246 (477)
T ss_dssp TEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-
T ss_pred cccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCC
Confidence 22 22222233444 344552 45799999 9999999999888873
No 41
>PTZ00420 coronin; Provisional
Probab=96.83 E-value=0.05 Score=50.61 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=70.6
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCce--------eEEEecC-CCeecceEee-CCC-eEEecCCCCEEEEEECCCCCeec
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGES--------RWSFSMG-KPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMKK 95 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~--------~W~f~t~-~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~~ 95 (161)
|..+..+..|+.||+|+..|..++.. ..++... ..|. +.... ++. +++-++.|+.+...|..+|+. .
T Consensus 84 P~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~ 161 (568)
T PTZ00420 84 PCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-A 161 (568)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEEECCCCcE-E
Confidence 33567899999999999999887532 2233221 1222 11222 233 334555677999999999887 4
Q ss_pred cccCcccceecceeEeeCCeEE-EEeeCCEEEEEECCCCcEEEEecC
Q 031361 96 PSIDVGEFMRRMPHVWDDGALL-LGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 96 w~~~~~~~V~ssP~v~~dg~Vy-vGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
..+.....|.+.= ...||.++ .++.|+.++..|+++|+.+.++..
T Consensus 162 ~~i~~~~~V~Sls-wspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 162 FQINMPKKLSSLK-WNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEecCCcEEEEE-ECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 4444343343322 22235554 577899999999999999887754
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.78 E-value=0.0061 Score=51.59 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=78.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-----------------------------------CC-
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-----------------------------------DP- 71 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-----------------------------------d~- 71 (161)
..+...-.+.-|-.++-.|-.||++.-+|..-..-..+.+++ |+
T Consensus 69 ~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 69 SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred ccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCce
Confidence 344455566778899999999999999887643322222221 11
Q ss_pred -------CeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 72 -------DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 72 -------~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.-+|.++-||++..+|.+.|.+ -..-++++|.+.-+.-+.+-+.+|+-|+++..||..|||++..|+.
T Consensus 149 ~Si~v~~heIvaGS~DGtvRtydiR~G~l--~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 149 SSIDVAEHEIVAGSVDGTVRTYDIRKGTL--SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred eEEEecccEEEeeccCCcEEEEEeeccee--ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 2366666788999999998877 2334556676665554435578999999999999999999987765
No 43
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.73 E-value=0.046 Score=49.41 Aligned_cols=115 Identities=10% Similarity=0.137 Sum_probs=67.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCe---ecceEee-CCCeEEecC--------------CCCEEEEEECCC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI---YSSFTRN-DPDFYVDVG--------------EDWKLYFHRKGI 90 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i---~ssp~~~-d~~~~V~~~--------------ddg~Lyald~~t 90 (161)
.+|.+++++. ..++.+|. .|+++|.++..+.- +.....- +++.++-.. +| .++-+| .+
T Consensus 157 ~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~t 232 (477)
T PF05935_consen 157 PNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVEVD-PT 232 (477)
T ss_dssp TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE--TT
T ss_pred CCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEEEC-CC
Confidence 5677777776 99999999 59999999987743 3333222 334333221 45 688899 99
Q ss_pred CCeeccccCcccceeccee---------------------------E-eeCCeEEEEeeCC-EEEEEECCCCcEEEEecC
Q 031361 91 GKMKKPSIDVGEFMRRMPH---------------------------V-WDDGALLLGHEKT-SVFFVDAKSGGMICSHES 141 (161)
Q Consensus 91 G~~~~w~~~~~~~V~ssP~---------------------------v-~~dg~VyvGs~d~-~lyalDa~TG~~~W~~~~ 141 (161)
|++ .|.+.+.+.+..... . ..|+.+++.++.. .++.||.+||+++|....
T Consensus 233 G~v-v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 233 GEV-VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp S-E-EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CCE-EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 999 888888876521110 1 1146688888755 999999999999999998
Q ss_pred CCCCCCc
Q 031361 142 DNSASTL 148 (161)
Q Consensus 142 ~~~~~~~ 148 (161)
....+.-
T Consensus 312 ~~~w~~~ 318 (477)
T PF05935_consen 312 PGGWNGT 318 (477)
T ss_dssp STT--TT
T ss_pred CCCCCcc
Confidence 7655443
No 44
>PTZ00420 coronin; Provisional
Probab=96.66 E-value=0.077 Score=49.38 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=71.9
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeE
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHV 110 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v 110 (161)
..+..++.||+|.-.|.++|+.++++.....|.+-.--.++..++.+..|+.+..+|+++|+. .-.+..++....+-.+
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-i~tl~gH~g~~~s~~v 217 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-ASSFHIHDGGKNTKNI 217 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-EEEEecccCCceeEEE
Confidence 344578999999999999999999987665555422223667776666777999999999987 4444444321111111
Q ss_pred ------eeCCeEEEEeeCC----EEEEEECCC-CcEEEEecCCC
Q 031361 111 ------WDDGALLLGHEKT----SVFFVDAKS-GGMICSHESDN 143 (161)
Q Consensus 111 ------~~dg~VyvGs~d~----~lyalDa~T-G~~~W~~~~~~ 143 (161)
.+++.+..++.+. .+..-|.++ ++++-.+..+.
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 2334455555443 688888774 66666554433
No 45
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.63 E-value=0.068 Score=46.98 Aligned_cols=113 Identities=14% Similarity=0.025 Sum_probs=82.9
Q ss_pred CCCEEEEEecC-----CeEEEEeCCCCceeEEEecCCCeecceEeeCC-CeEEecC---------CCCEEEEEECCCCCe
Q 031361 29 SGDLALVATLN-----GTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVG---------EDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~D-----G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~-~~~V~~~---------ddg~Lyald~~tG~~ 93 (161)
....|||-+.. |++|-+|..+++.+=+++++..-+.- ...|+ .+||-+. ++..+-.+|+.|+++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 55678988886 89999999999999999987644432 23344 5788777 666899999999999
Q ss_pred eccccCcccc----eeccee---EeeCC-eEEEEe-e-CCEEEEEECCCCcEEEEecCCC
Q 031361 94 KKPSIDVGEF----MRRMPH---VWDDG-ALLLGH-E-KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 94 ~~w~~~~~~~----V~ssP~---v~~dg-~VyvGs-~-d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.....+++- +...|. ++.|| .+||.. . ++.+-.||..+++.+-+....+
T Consensus 90 -~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 90 -IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred -EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence 655555322 222332 23344 588876 3 6899999999999999998754
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.63 E-value=0.096 Score=49.67 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=73.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe--eCCCeEEecCCCCEEEEEECCCCCeeccccCcc-ccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR--NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~--~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~ 105 (161)
.+..++.|+.||+|+..|..+|+.+=+++....+... .. .++..++-+..|+.++.+|..+++.....+..+ ..|.
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v-~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~ 665 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV-QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE-EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE
Confidence 4568889999999999999999988777765544432 22 235566666678899999988776412122222 2343
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCC------cEEEEec
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSG------GMICSHE 140 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG------~~~W~~~ 140 (161)
.--+. +...++.|+.|+++...|..++ +.+.++.
T Consensus 666 ~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 666 YVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred EEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc
Confidence 33332 3366788999999999998753 4555554
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.60 E-value=0.038 Score=47.46 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=81.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee---------------------------------C-----
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---------------------------------D----- 70 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~---------------------------------d----- 70 (161)
....++.|+.|-++..-|-+||+++-+++++.++...--.. +
T Consensus 63 ~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 63 DSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred CcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 45678899999999999999999998888876644221000 0
Q ss_pred ----------------CCeEEecCCCCEEEEEECCCCCeeccccCccc-ceecceeEeeCCeEE-EEeeCCEEEEEECCC
Q 031361 71 ----------------PDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRMPHVWDDGALL-LGHEKTSVFFVDAKS 132 (161)
Q Consensus 71 ----------------~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ssP~v~~dg~Vy-vGs~d~~lyalDa~T 132 (161)
++.+|.+.++|++-.+|+++|++..-.-+... .|..--. +.|.+.| .||+|++-..+|..|
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~-s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF-SRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccc-cCCcceEEecccCccceeeeccc
Confidence 13467777888999999999977222222111 1111111 2235554 699999999999999
Q ss_pred CcEEEEecCCCCCCC
Q 031361 133 GGMICSHESDNSAST 147 (161)
Q Consensus 133 G~~~W~~~~~~~~~~ 147 (161)
=+.+.+|.++...+.
T Consensus 222 l~v~Kty~te~PvN~ 236 (327)
T KOG0643|consen 222 LEVLKTYTTERPVNT 236 (327)
T ss_pred eeeEEEeeecccccc
Confidence 999999998876543
No 48
>PTZ00421 coronin; Provisional
Probab=96.58 E-value=0.12 Score=47.16 Aligned_cols=112 Identities=10% Similarity=0.163 Sum_probs=71.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-eecceEe-eCCCeEEec----CCCCEEEEEECCCCCeeccccCccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-IYSSFTR-NDPDFYVDV----GEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i~ssp~~-~d~~~~V~~----~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
.+..++.++.||+|+..|.++|+++.++..... ....... .+++.++-+ ..|+.+...|.++.....-......
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 567888999999999999999999988865332 2211221 233444432 2466888888876543111112121
Q ss_pred -ceecceeEeeCC-eEEEEee-CCEEEEEECCCCcEEEEec
Q 031361 103 -FMRRMPHVWDDG-ALLLGHE-KTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 103 -~V~ssP~v~~dg-~VyvGs~-d~~lyalDa~TG~~~W~~~ 140 (161)
.....|+...|+ .+|+|++ |++++..|..+|++.-...
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 233456665444 5677775 9999999999999876543
No 49
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.48 E-value=0.094 Score=46.75 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=65.4
Q ss_pred CCC-EEEEEecCCe--EEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC---CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGD-LALVATLNGT--VHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~-~V~vgs~DG~--lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+. ++|..+.+|. ||.+|..+|++. ++.....+...|... |+..+++..+ ..++|.+|..+|+.++..+...
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~ 350 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE 350 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence 344 4556777885 999999888653 333333344555543 5554444332 2479999999998866554322
Q ss_pred cceecceeEeeCC-eEEEEeeC-C--EEEEEECCCCcEEE
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEK-T--SVFFVDAKSGGMIC 137 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d-~--~lyalDa~TG~~~W 137 (161)
-..+|..+.|| .+++.+.+ + ++|.+|.++|++.-
T Consensus 351 --~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 351 --QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred --CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 23457766444 45555443 3 78999999998643
No 50
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=96.45 E-value=0.013 Score=50.85 Aligned_cols=83 Identities=17% Similarity=0.087 Sum_probs=43.5
Q ss_pred CCeEEEEeCCC-CceeEEEecCC--CeecceEeeC--CCe---EEecCC-CCEEEEEECCCCCeeccc----cCccccee
Q 031361 39 NGTVHLVDTKR-GESRWSFSMGK--PIYSSFTRND--PDF---YVDVGE-DWKLYFHRKGIGKMKKPS----IDVGEFMR 105 (161)
Q Consensus 39 DG~lyAvd~~t-G~~~W~f~t~~--~i~ssp~~~d--~~~---~V~~~d-dg~Lyald~~tG~~~~w~----~~~~~~V~ 105 (161)
...||.+|+++ |+++|++.+.. ...+.|...| .|. ++|.+| +|+||.+|..+.....|. +...++|.
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~GnlwR~dl~~~~~~~~~~~~~~~g~~PIt 259 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLGGNLWRFDLSSANPSSWSVRTIFSGTQPIT 259 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETTSEEEEEE--TTSTT-GG-EESGGG-----
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCCCcEEEEECCCCCcccceeeecccCcCCeE
Confidence 46899999999 99999998644 3445666543 332 445554 689999998654333453 33347899
Q ss_pred cceeEeeC---CeEEEEee
Q 031361 106 RMPHVWDD---GALLLGHE 121 (161)
Q Consensus 106 ssP~v~~d---g~VyvGs~ 121 (161)
+.|.+..+ ..||||+-
T Consensus 260 ~aP~v~~~~~~~~V~fGTG 278 (335)
T PF05567_consen 260 AAPAVVRDPDGRWVFFGTG 278 (335)
T ss_dssp S--EEEE-TTSSEEEEE--
T ss_pred ecceEEecCCCCEEEEEeC
Confidence 99998532 46888864
No 51
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=96.42 E-value=0.011 Score=56.90 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=63.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
..+|.+|.|+.++..|.+|.+||+..|+|.+..||.....+. .+-| .+...|..+-.. +|..+-.+.+...
T Consensus 105 ssdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~~~~~v~~g-rt~y-------tv~m~d~~~~~~-~wn~t~~dy~a~~ 175 (903)
T KOG1027|consen 105 SSDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEPIKQLVYLG-RTNY-------TVTMYDKNVRGK-TWNTTFGDYSAQY 175 (903)
T ss_pred CCCCeEEecccccceEEecCCccceeEEEecCCcchhheecc-ccee-------EEecccCcccCc-eeeccccchhccC
Confidence 378999999999999999999999999999999887654332 1111 111112222233 5555555444443
Q ss_pred eeEee-CCeEEEEe-eCCEEEEEECCCCcEEEEecC
Q 031361 108 PHVWD-DGALLLGH-EKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 108 P~v~~-dg~VyvGs-~d~~lyalDa~TG~~~W~~~~ 141 (161)
|--.. .....+++ .+|-+-.+|.++|+.+|.-+-
T Consensus 176 ~~~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~ 211 (903)
T KOG1027|consen 176 PSGVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQDL 211 (903)
T ss_pred CCccCCceeEEEeecCCccEEeccCcccceeecccc
Confidence 33111 12222222 366666688888888876543
No 52
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.40 E-value=0.11 Score=45.43 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=66.4
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCC-eEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
+..+..+|+.+.||.|.-+|..+++.+-+.+++..-.+-....|+. +|+.+...+.+-.+|++|.++ .-...++..-.
T Consensus 45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~ 123 (369)
T PF02239_consen 45 SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPV 123 (369)
T ss_dssp TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-T
T ss_pred cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccc
Confidence 3456789999999999999999999999999988655533334554 566776777999999999888 33344332211
Q ss_pred cceeEeeCCe--EEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 106 RMPHVWDDGA--LLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 106 ssP~v~~dg~--VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
..|- .+ -++.+.....|.++.+....+|..+..+
T Consensus 124 ~~~~----~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 124 DGPE----SRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp TTS-------EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cccC----CCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 0000 11 1234445555555555544556555433
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.37 E-value=0.0034 Score=56.90 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=95.1
Q ss_pred CCCCCEEEEEecCCeEEEEeCCC-CceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 27 PESGDLALVATLNGTVHLVDTKR-GESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~t-G~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
|...-+++-++.||.||..|..+ |+.+=+|.--. ||...--..++.-|.-++-|..+--.|.+||+. .-+|..+..+
T Consensus 224 p~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~-~~~f~~~~~~ 302 (503)
T KOG0282|consen 224 PKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV-LSRFHLDKVP 302 (503)
T ss_pred cceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE-EEEEecCCCc
Confidence 34677899999999999999887 88888886543 444433334566777777777888889999999 8888888665
Q ss_pred ecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCceeee
Q 031361 105 RRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPMKKSF 158 (161)
Q Consensus 105 ~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~ 158 (161)
.+-=.--+| +.+++|..|+.|...|.++|+++..|+..--+.+--+=.|-.+-|
T Consensus 303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 543333333 667789999999999999999998887655554444434433333
No 54
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.23 E-value=0.35 Score=41.48 Aligned_cols=106 Identities=12% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCCEEEEEecC---CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec-C--CCCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV-G--EDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~-~--ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+.+ ..||.+|..+|+..--....+... ++... |+..+++. . +...+|.+|..+|+.+.+.. .
T Consensus 200 dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--~ 276 (417)
T TIGR02800 200 DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN--G 276 (417)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC--C
Confidence 34455555443 479999999997654333333222 34433 55544332 2 23469999999887744432 2
Q ss_pred cceecceeEeeCC-eEEEEeeCC---EEEEEECCCCcEEE
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEKT---SVFFVDAKSGGMIC 137 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d~---~lyalDa~TG~~~W 137 (161)
.....+|....|+ .+++.+..+ .+|.+|..+|+...
T Consensus 277 ~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~ 316 (417)
T TIGR02800 277 PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR 316 (417)
T ss_pred CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 2345567765455 466665432 79999999888653
No 55
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.20 E-value=0.19 Score=43.52 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=48.4
Q ss_pred CCCEEEE--EecCCeEEEEeCCCCceeEEEecCCC---e-ecceEeeCCCeEEecCCC-----------CEEEEEECCCC
Q 031361 29 SGDLALV--ATLNGTVHLVDTKRGESRWSFSMGKP---I-YSSFTRNDPDFYVDVGED-----------WKLYFHRKGIG 91 (161)
Q Consensus 29 ~~~~V~v--gs~DG~lyAvd~~tG~~~W~f~t~~~---i-~ssp~~~d~~~~V~~~dd-----------g~Lyald~~tG 91 (161)
.++.+|+ |..+..++.+|....+-.|+.-..-| - ..+....++.+||-++.+ ..+|++|+.+.
T Consensus 37 ~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 37 DNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred ECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 5778887 33344578888766556787533222 1 112234477788755432 25888998764
Q ss_pred CeeccccCc--ccceecceeEe-eCCeEE-EEeeC
Q 031361 92 KMKKPSIDV--GEFMRRMPHVW-DDGALL-LGHEK 122 (161)
Q Consensus 92 ~~~~w~~~~--~~~V~ssP~v~-~dg~Vy-vGs~d 122 (161)
+ |.+... ........++. .|+.|| +|..+
T Consensus 117 ~--W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 117 S--WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred E--EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 2 333321 12222222222 347787 56653
No 56
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.18 E-value=0.17 Score=44.55 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=66.1
Q ss_pred CCCEE-EEEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC-C--CEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLA-LVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE-D--WKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V-~vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d-d--g~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+ +..+.+| .||.+|..+|+.. ++.....+..+|... |+..+++..+ + .++|.++..+|+.++..+.-
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g- 335 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG- 335 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-
Confidence 34444 4556777 5999999988753 443333344455544 5555555443 2 36999999888876655432
Q ss_pred cceecceeEeeCC-eEEEEeeCC---EEEEEECCCCcEE
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEKT---SVFFVDAKSGGMI 136 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d~---~lyalDa~TG~~~ 136 (161)
....+|..+.|| .+++.+.++ .++.+|..+|+..
T Consensus 336 -~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 336 -NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred -CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 234467776554 455554333 6999999999876
No 57
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.18 E-value=0.22 Score=43.86 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=66.7
Q ss_pred CCCCEEEEEecCC------eEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecC---CCCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNG------TVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVG---EDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG------~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~---ddg~Lyald~~tG~~~~w~ 97 (161)
+..-++|+....| .|+..|...++++.-....+++. +|.. .|+..+++.. ++..+|.+|..+|+.+...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~ 242 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG 242 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee
Confidence 4455666665555 89999997766654333334444 4554 4666544432 3468999999999774432
Q ss_pred cCcccceecceeEeeCCe-E-EEEeeCC--EEEEEECCCCcEEE
Q 031361 98 IDVGEFMRRMPHVWDDGA-L-LLGHEKT--SVFFVDAKSGGMIC 137 (161)
Q Consensus 98 ~~~~~~V~ssP~v~~dg~-V-yvGs~d~--~lyalDa~TG~~~W 137 (161)
. .. ....+|..+.||. + |..++++ .+|.+|.++|+...
T Consensus 243 ~-~~-g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 243 N-FP-GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred c-CC-CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence 1 22 2445788776664 4 4455544 59999999988654
No 58
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.15 E-value=0.2 Score=43.64 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCEE-EEEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC---CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLA-LVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V-~vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+ |..+.+| .||.+|..+|+.. ++.....+..+|... |+..+++..+ ..++|.++..+|+.++..+..
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~- 330 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG- 330 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-
Confidence 34444 4556666 6999999988754 343333345556554 5554444332 347999999999876665432
Q ss_pred cceecceeEeeCC-eEEEEee-CC--EEEEEECCCCcEEEE
Q 031361 102 EFMRRMPHVWDDG-ALLLGHE-KT--SVFFVDAKSGGMICS 138 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~-d~--~lyalDa~TG~~~W~ 138 (161)
.....|..+.|| .+++.+. ++ .+|.+|.++|+...-
T Consensus 331 -~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 331 -NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred -CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence 234466665443 4555443 32 699999999987543
No 59
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.09 E-value=0.34 Score=42.63 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=65.0
Q ss_pred CCCEEEEEec---CCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec-CC--CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATL---NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV-GE--DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~---DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~-~d--dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+. +..||..|..+|+.. ++.........+... |++.++.. .. ..++|.+|..+|+.++... .
T Consensus 212 DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~--~ 288 (435)
T PRK05137 212 NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD--S 288 (435)
T ss_pred CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC--C
Confidence 4444444432 468999999998764 332222222334443 56544332 22 2469999999998755432 3
Q ss_pred cceecceeEeeCCe-EEEEee-C--CEEEEEECCCCcEEEEe
Q 031361 102 EFMRRMPHVWDDGA-LLLGHE-K--TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs~-d--~~lyalDa~TG~~~W~~ 139 (161)
..+..+|..+.||. +++.+. + ..+|.+|+.+|+...-.
T Consensus 289 ~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 289 PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence 34667788776654 666653 2 37999999888765443
No 60
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.07 E-value=0.14 Score=41.16 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=56.0
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc--cc---c
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV--GE---F 103 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~--~~---~ 103 (161)
++.+|+.+ ..|.||.+|..+++.. .+....|.-......++.+||.... .++.+|..+|+.+.. .+. ++ .
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~-~~~~~~~~~~~ 86 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVL-ADLPDGGVPFN 86 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSSEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEE-EEEETTCSCTE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCCCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEE-eeccCCCcccC
Confidence 45566655 4677888888766553 2333332222111124556665543 344448888876333 222 11 1
Q ss_pred eecceeEeeCCeEEEEeeC---------CEEEEEECCCCcEEEEec
Q 031361 104 MRRMPHVWDDGALLLGHEK---------TSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~d---------~~lyalDa~TG~~~W~~~ 140 (161)
--.--++..+|.+|++... +.+|.+++. |+......
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 1112234556889998754 579999988 77555443
No 61
>PRK03629 tolB translocation protein TolB; Provisional
Probab=96.03 E-value=0.18 Score=44.69 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=63.3
Q ss_pred CCCEEE-EEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCC---CEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLAL-VATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGED---WKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~-vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~dd---g~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..++ +.+.+| .||.+|.++|+.. ++..+......|... |+..+++..+. .++|.+|..+|+.++.....
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~- 330 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG- 330 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-
Confidence 444444 446666 5999999988764 232222233445543 56656555543 37999999988775543332
Q ss_pred cceecceeEeeCC-eEEE-EeeC--CEEEEEECCCCcEE
Q 031361 102 EFMRRMPHVWDDG-ALLL-GHEK--TSVFFVDAKSGGMI 136 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~Vyv-Gs~d--~~lyalDa~TG~~~ 136 (161)
....+|..+.|| .+++ +..+ ..+|.+|.++|+..
T Consensus 331 -~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 331 -SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred -CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 234567765555 3444 4333 46999999999865
No 62
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=95.91 E-value=0.043 Score=46.78 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=72.9
Q ss_pred CCCEEEEEecCCeEEEEeC------CCCceeEEEecCCCe--ecceEee-------CCCeEEecCCCCEEEEEECCCCCe
Q 031361 29 SGDLALVATLNGTVHLVDT------KRGESRWSFSMGKPI--YSSFTRN-------DPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~------~tG~~~W~f~t~~~i--~ssp~~~-------d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
+++.++.+. ||.+|+..= .-=|+.|..+..-.. ..-|.++ +|.++..+ .|+.+|..|.++|+.
T Consensus 71 ~d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i 148 (325)
T KOG0649|consen 71 HDDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRI 148 (325)
T ss_pred ehhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEE
Confidence 455555554 588888742 233567776542211 1112221 23444444 567999999999999
Q ss_pred eccccCcc-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 94 KKPSIDVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 94 ~~w~~~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
++- +.-+ ++|.+--.-..++-|+-|++||++..-|.+|+|-+.....-.+.+
T Consensus 149 ~r~-~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 149 QRE-YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN 201 (325)
T ss_pred EEE-EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChh
Confidence 444 4433 455543332334679999999999999999999998887655443
No 63
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.91 E-value=0.38 Score=41.97 Aligned_cols=106 Identities=11% Similarity=0.147 Sum_probs=63.8
Q ss_pred CCCEE-EEEecC--CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec-CC--CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLA-LVATLN--GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV-GE--DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V-~vgs~D--G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~-~d--dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+ |+...+ ..||..|..+|+..--....+ ....|... |++.+++. .. ...||.+|..+|+.++. .-.
T Consensus 209 DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l--t~~ 285 (430)
T PRK00178 209 DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV--TNH 285 (430)
T ss_pred CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc--ccC
Confidence 44444 444443 368999998887653222222 22334443 55544332 22 24799999999987443 223
Q ss_pred cceecceeEeeCC-eEEEEeeC---CEEEEEECCCCcEEE
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEK---TSVFFVDAKSGGMIC 137 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d---~~lyalDa~TG~~~W 137 (161)
..+..+|....|| .+++.+.. ..+|.+|..+|+...
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER 325 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 4467788876554 46666643 379999999998654
No 64
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.24 Score=42.94 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=49.7
Q ss_pred CeEEecCCCCEEEEEECCCCCeeccccCcccceecce---eEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 72 DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP---HVWDD-GALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 72 ~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP---~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
...+-+.+.+.+|.+|+-+|.+ +-.|+....=...| +..-| ..|+.|+.||++++-+.+||+++-+++..
T Consensus 200 K~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 200 KSILLSTNASFIYLLDAFDGTV-KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred CEEEEEeCCCcEEEEEccCCcE-eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 3344444667899999999997 66666553323223 23233 45677889999999999999999988874
No 65
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.77 E-value=0.67 Score=41.28 Aligned_cols=107 Identities=8% Similarity=0.030 Sum_probs=66.8
Q ss_pred CCC-EEEEEecC---CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec---CCCCEEEEEECCCCCeeccccCc
Q 031361 29 SGD-LALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV---GEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 29 ~~~-~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~---~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
.++ .+++.+.+ ..||.+|..+|+..-=....+ ....|... |+...+.. ..+..+|.+|..+|+.+++..
T Consensus 198 DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~-- 274 (419)
T PRK04043 198 KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN-- 274 (419)
T ss_pred CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc--
Confidence 344 46665444 579999999998764333222 22334433 55433321 234689999999887755432
Q ss_pred ccceecceeEeeCC-eEEEEeeC---CEEEEEECCCCcEEEE
Q 031361 101 GEFMRRMPHVWDDG-ALLLGHEK---TSVFFVDAKSGGMICS 138 (161)
Q Consensus 101 ~~~V~ssP~v~~dg-~VyvGs~d---~~lyalDa~TG~~~W~ 138 (161)
...+...|..+.|| .+++.|.. ..+|.+|+.+|+...-
T Consensus 275 ~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 275 YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 23356778877666 47776633 2899999999998443
No 66
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.76 E-value=0.12 Score=49.99 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=84.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC----eecceEeeCCCeE-EecCCCCEEEEEECCCCCeeccccCcc-c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP----IYSSFTRNDPDFY-VDVGEDWKLYFHRKGIGKMKKPSIDVG-E 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~----i~ssp~~~d~~~~-V~~~ddg~Lyald~~tG~~~~w~~~~~-~ 102 (161)
+=+.+.+|+.+|.+...|-++|+++-+|+.-.. |..+|+. |+. ||+ .+|.+..++.+.++. .-.|+.. +
T Consensus 171 YLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL---DVVaiG~-~~G~ViifNlK~dki-l~sFk~d~g 245 (910)
T KOG1539|consen 171 YLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL---DVVAIGL-ENGTVIIFNLKFDKI-LMSFKQDWG 245 (910)
T ss_pred heeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc---eEEEEec-cCceEEEEEcccCcE-EEEEEcccc
Confidence 567899999999999999999999999986442 3345544 555 455 566999999999999 7778775 5
Q ss_pred ceecceeEee-CCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 103 FMRRMPHVWD-DGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 ~V~ssP~v~~-dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.|.+--+-.| ...+-.|++.|.|..-|.+.-+++|......
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah 287 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH 287 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc
Confidence 6665555443 1235678888999999999999999987433
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.73 E-value=0.43 Score=38.35 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=58.7
Q ss_pred CCCEEEEEecC---------CeEEEEeCCCCceeEEEecCCCeecceEe-eCC-CeEEecCCCCEEEEEECC--CCCee-
Q 031361 29 SGDLALVATLN---------GTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDP-DFYVDVGEDWKLYFHRKG--IGKMK- 94 (161)
Q Consensus 29 ~~~~V~vgs~D---------G~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~-~~~V~~~ddg~Lyald~~--tG~~~- 94 (161)
.+|.+|+++.. |.||.++.. |+...-...- ........ .|+ .+|+--...+.+|.++.. ++++.
T Consensus 95 ~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 95 PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred CCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-ccccceEECCcchheeecccccceeEEEeccccccceee
Confidence 35667777654 568888887 6654433221 11111112 144 356554455578887764 22110
Q ss_pred -ccccCcccceecce---eEeeCCeEEEEee-CCEEEEEECCCCcEEEEecCC
Q 031361 95 -KPSIDVGEFMRRMP---HVWDDGALLLGHE-KTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 95 -~w~~~~~~~V~ssP---~v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~ 142 (161)
+...+....- ..| ++..+|.+|++.. .+.++.+|+. |+++-+....
T Consensus 173 ~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 173 RRVFIDFPGGP-GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEEE-SSSS-CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred eeeEEEcCCCC-cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 1011111110 112 2455688999874 7899999988 9999888876
No 68
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.72 E-value=0.7 Score=41.21 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCEE-EEEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec-CCCC--EEEEEECCCCCeeccccCcc
Q 031361 29 SGDLA-LVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV-GEDW--KLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V-~vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~-~ddg--~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+ |+...+| .||.+|..+|+..--.... ....+|... |++.+++. ..+| .||.+|..+|+.++... .
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~--~ 304 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR--H 304 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc--C
Confidence 34444 4444444 6999999998864222111 222345443 55544432 2233 59999999998744432 3
Q ss_pred cceecceeEeeCCe-EEEEee---CCEEEEEECCCCcEEEE
Q 031361 102 EFMRRMPHVWDDGA-LLLGHE---KTSVFFVDAKSGGMICS 138 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs~---d~~lyalDa~TG~~~W~ 138 (161)
..+...|..+.|+. +++.+. +..+|.+|.++|+...-
T Consensus 305 ~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 305 RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 34667788765553 555553 24799999999987543
No 69
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.71 E-value=0.57 Score=41.44 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=60.0
Q ss_pred CCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec--CC-CCEEEEEECCCCCeeccccCcccceecceeEeeCC
Q 031361 39 NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV--GE-DWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDG 114 (161)
Q Consensus 39 DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~--~d-dg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg 114 (161)
+..||..|..+|+..--....+ ....|... |+...+.. .+ ..+||.+|.++|+.++.... .....+|....||
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~-~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~--~~~~~~~~wSPDG 298 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG--RSNNTEPTWFPDS 298 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCC-CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC--CCCcCceEECCCC
Confidence 3479999998887654322222 22344443 55543332 22 23699999999988544322 2355678877666
Q ss_pred e-EEEEeeCC---EEEEEECCCCcEEEE
Q 031361 115 A-LLLGHEKT---SVFFVDAKSGGMICS 138 (161)
Q Consensus 115 ~-VyvGs~d~---~lyalDa~TG~~~W~ 138 (161)
. +++.+.++ .+|.+|.++|+...-
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCCCCeEEe
Confidence 5 65666543 899999999876543
No 70
>PRK02889 tolB translocation protein TolB; Provisional
Probab=95.68 E-value=0.35 Score=42.60 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=64.4
Q ss_pred CCCEEE-EEecCCe--EEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC---CCEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLAL-VATLNGT--VHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~-vgs~DG~--lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..++ ..+.||. ||.+|..+|+. -++.....+..+|... |+..+++..+ .-++|.++..+|+.++..+.-
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g- 327 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG- 327 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-
Confidence 344444 4566774 88888876653 3442233344455543 5555544433 237999998888765554432
Q ss_pred cceecceeEeeCC-eEEEEeeCC---EEEEEECCCCcEEEEe
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEKT---SVFFVDAKSGGMICSH 139 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d~---~lyalDa~TG~~~W~~ 139 (161)
.-..+|..+.|| .+++.+.++ .+|.+|..+|+...-.
T Consensus 328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 223467776555 355555443 7999999999877543
No 71
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.60 E-value=0.36 Score=43.16 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=78.1
Q ss_pred CCCEEEEEecCCeEEEEeC-CCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccc-ee
Q 031361 29 SGDLALVATLNGTVHLVDT-KRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF-MR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~-~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~-V~ 105 (161)
.+..+.-++.|++|+.-|. ..|+..=+++.-.....+..+. ++..++-+.+|+.++..|.++|+. .-.++.+.- |.
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is 292 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGIS 292 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-EEeeeccCCceE
Confidence 4558889999999999999 6678888887443333333443 456777777888999999999988 666666643 33
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
+.=+-.++..+..+|+|+.+..-|..+|...
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 3322233344667999999999999999953
No 72
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.60 E-value=0.22 Score=43.80 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=70.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEE----EecCCCe--------ecceEee--CCCeEEecC-------C--CCEEEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWS----FSMGKPI--------YSSFTRN--DPDFYVDVG-------E--DWKLYF 85 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~----f~t~~~i--------~ssp~~~--d~~~~V~~~-------d--dg~Lya 85 (161)
.++..|+-|-+|.||.+|....++.|. .-++... +...+.. .+.+||--. . +..++.
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 567899999999999999987776643 2221110 0000111 234555211 1 245899
Q ss_pred EECCCCCeeccccCcccceecceeEeeC-CeEEEEe-eCCEEEEEECCCCcEEEEecCCCCCCC
Q 031361 86 HRKGIGKMKKPSIDVGEFMRRMPHVWDD-GALLLGH-EKTSVFFVDAKSGGMICSHESDNSAST 147 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~~V~ssP~v~~d-g~VyvGs-~d~~lyalDa~TG~~~W~~~~~~~~~~ 147 (161)
+|.+|++. .-++++++.+.+--+..++ ..+|.-+ .++.|+..|+.|||++.+.+.-+..+.
T Consensus 274 ~D~~t~kr-v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~ 336 (342)
T PF06433_consen 274 YDLKTHKR-VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPT 336 (342)
T ss_dssp EETTTTEE-EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--
T ss_pred EECCCCeE-EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCce
Confidence 99999988 6677777766644443333 3455444 578999999999999999886665554
No 73
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.16 E-value=0.55 Score=40.18 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=63.0
Q ss_pred cCCeEEEEeCCCCceeEEEecCCCee---cc----eE---------------------eeCCCeEEecCCCCEEEEEECC
Q 031361 38 LNGTVHLVDTKRGESRWSFSMGKPIY---SS----FT---------------------RNDPDFYVDVGEDWKLYFHRKG 89 (161)
Q Consensus 38 ~DG~lyAvd~~tG~~~W~f~t~~~i~---ss----p~---------------------~~d~~~~V~~~ddg~Lyald~~ 89 (161)
.|+.++-+|..||+++|+.+.-.-+. .. +. ..+++++|-+..-..+|.+|.+
T Consensus 94 ~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~ 173 (299)
T PF14269_consen 94 LDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPS 173 (299)
T ss_pred ecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECC
Confidence 37888999999999999986532111 00 00 0033666766666789999999
Q ss_pred CCCeeccccCccc----------ce-ecceeEe----eCCeEE-E----------EeeCCEEEEEECCCCcEEEEecCC
Q 031361 90 IGKMKKPSIDVGE----------FM-RRMPHVW----DDGALL-L----------GHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 90 tG~~~~w~~~~~~----------~V-~ssP~v~----~dg~Vy-v----------Gs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
||++ .|.+.-+. +. +--|-.. +++.+- | ....+.++.||..+.+..+..+..
T Consensus 174 tG~I-~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~ 251 (299)
T PF14269_consen 174 TGKI-IWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS 251 (299)
T ss_pred CCcE-EEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee
Confidence 9999 77764330 11 1111111 222221 1 125678999999977666655443
No 74
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.12 E-value=0.38 Score=44.59 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=83.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC--eecceEeeCCCeEEecC-CCCEEEEEECCCCCeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP--IYSSFTRNDPDFYVDVG-EDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~--i~ssp~~~d~~~~V~~~-ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
.-..+..|+-.|.|-+++...|+.-|++.|++- .+....-+++-+.+|+. .|.++-.++.++++. .-.+....+-.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~ 147 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLV 147 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCcc
Confidence 456677899999999999999999999998761 22222222334555543 467777788888887 66677777777
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
+|=++..|+.+ .++-.+.+-.+|.+|+|++-.|.....
T Consensus 148 ~sl~is~D~~~-l~~as~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 148 SSLCISPDGKI-LLTASRQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred ceEEEcCCCCE-EEeccceEEEEEccCceEEEEecCCCc
Confidence 88888777643 344456899999999999999976543
No 75
>PRK01742 tolB translocation protein TolB; Provisional
Probab=95.11 E-value=0.92 Score=39.97 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=63.1
Q ss_pred CCCEEEEEecC---CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEec-CCCC--EEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDV-GEDW--KLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~-~ddg--~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+.+ ..||..|..+|+..--....+ ....+... |+..++.+ ..+| +||.+|..+|+.++.. -+
T Consensus 214 DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt--~~ 290 (429)
T PRK01742 214 DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT--SG 290 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec--cC
Confidence 44444444433 379999999997543222222 22334443 55544443 2333 5899999888774443 33
Q ss_pred cceecceeEeeCCe-EEEEe-eCC--EEEEEECCCCcEEE
Q 031361 102 EFMRRMPHVWDDGA-LLLGH-EKT--SVFFVDAKSGGMIC 137 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs-~d~--~lyalDa~TG~~~W 137 (161)
.....+|....||. +++.+ .++ .+|.+|..+++...
T Consensus 291 ~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 291 AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 44667888877665 56555 333 88999988876644
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.31 Score=42.21 Aligned_cols=73 Identities=21% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCC---CeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGK---PIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
+..+..++++|..+.+|-+|+-+|.++=+|.... .+..+... .|+..++.+.+||++++.+.++|+. .-.+..
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~-v~~~~~ 272 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK-VAVLRG 272 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE-eeEecC
Confidence 3478889999999999999999999999987532 22223333 4778888888999999999999988 444443
No 77
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.02 E-value=1 Score=39.66 Aligned_cols=108 Identities=13% Similarity=0.153 Sum_probs=64.6
Q ss_pred CCCEEEEEe-cCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecC-CC--CEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVAT-LNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVG-ED--WKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs-~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~-dd--g~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+ .+| .||.+|..+|+..--. ..+....++... |++.+++.. ++ .++|.+|..+|+.+.. +-+
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L--t~~ 378 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL--TPG 378 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC--CCC
Confidence 445555554 455 4999999888764322 122222345443 555544432 22 3699999999988433 222
Q ss_pred cceecceeEeeCCe-EEEEee---CCEEEEEECCCCcEEEEecC
Q 031361 102 EFMRRMPHVWDDGA-LLLGHE---KTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs~---d~~lyalDa~TG~~~W~~~~ 141 (161)
....+|..+.||. +++.+. .+.||.+|. +|+...+...
T Consensus 379 -~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~ 420 (433)
T PRK04922 379 -SLDESPSFAPNGSMVLYATREGGRGVLAAVST-DGRVRQRLVS 420 (433)
T ss_pred -CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEccc
Confidence 2456788876665 566654 357999997 5666666654
No 78
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=94.98 E-value=0.19 Score=46.40 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=78.3
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeE
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHV 110 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v 110 (161)
+.++.|+......-+-.--|+++|.+.+-. +.+.|+-|+.|+.+...+ .-++ .|.-.+.++++++-+.
T Consensus 349 N~iL~Gt~~~~f~~~v~gh~delwgla~hp---------s~~q~~T~gqdk~v~lW~--~~k~-~wt~~~~d~~~~~~fh 416 (626)
T KOG2106|consen 349 NFILQGTLENGFTLTVQGHGDELWGLATHP---------SKNQLLTCGQDKHVRLWN--DHKL-EWTKIIEDPAECADFH 416 (626)
T ss_pred ceEEEeeecCCceEEEEecccceeeEEcCC---------ChhheeeccCcceEEEcc--CCce-eEEEEecCceeEeecc
Confidence 344455555555566666678888886522 346788999998888777 4456 8988899999988886
Q ss_pred eeCCeEEEEeeCCEEEEEECCCCcEEE-----------EecCCCCCCCcCCCCC
Q 031361 111 WDDGALLLGHEKTSVFFVDAKSGGMIC-----------SHESDNSASTLGSGLP 153 (161)
Q Consensus 111 ~~dg~VyvGs~d~~lyalDa~TG~~~W-----------~~~~~~~~~~~~~~~~ 153 (161)
-. |.|.+|+-.|.++.+|.+|-.++- +|..++.+-.+|++-|
T Consensus 417 ps-g~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 417 PS-GVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred Cc-ceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence 65 688899999999999999955543 3445555555555544
No 79
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.13 Score=49.59 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=71.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc--eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS--FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss--p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
....+||.|..|-|-++|.+||+..|+--.+.+-.+. +.. .+| +.|+..+++.+..+|.+ -|+.+..+....
T Consensus 46 ~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~----~~i-S~dg~~lr~wn~~~g~l-~~~i~l~~g~~~ 119 (910)
T KOG2103|consen 46 KSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLT----NTI-SVDGRYLRSWNTNNGIL-DWEIELADGFKG 119 (910)
T ss_pred CCceEEEEeccchhheecccCCcEEEEEeccCCCcccCccee----EEE-ccCCcEEEeecCCCcee-eeecccccccce
Confidence 5789999999999999999999999998665532221 111 232 23566899999999999 998888766444
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.-+....+..+++. ...+.|++.|+.....
T Consensus 120 ~~~~v~~~i~v~~g-------~~~~~g~l~w~~~~~~ 149 (910)
T KOG2103|consen 120 LLLEVNKGIAVLNG-------HTRKFGELKWVESFSI 149 (910)
T ss_pred eEEEEccceEEEcc-------eeccccceeehhhccc
Confidence 44433334344433 6778899999866543
No 80
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.92 E-value=0.25 Score=47.47 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=70.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeC--CCe-EEecCCCCEEEEEECCCCCeeccccCccc-ce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRND--PDF-YVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d--~~~-~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V 104 (161)
.+..++-.|.||+|+|-|.+.++=--+|....|+.-+-.+.| +++ ..+..|-=.+|..+.+||++ .=-.+-+| +|
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPV 481 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPV 481 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcc
Confidence 678899999999999999999999999999999986666666 444 44555555677778888887 44444443 23
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEE
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalD 129 (161)
.+--.-.+...++-||||.++..=|
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEE
Confidence 3211112224577899999887655
No 81
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.87 E-value=1.4 Score=37.82 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=63.8
Q ss_pred CCCEEEEEec-CC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCC---EEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATL-NG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDW---KLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~-DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg---~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+. +| .||.+|..+|+.. ++...+.-...+... |++.+++...++ ++|.+|..+|..+....
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~--- 363 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD--- 363 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC---
Confidence 4555655554 33 6999999888753 333233222334443 556665554443 79999998886643332
Q ss_pred cceecceeEeeCC-eEEEEeeCC--EEEEEECCCCcEEEEecC
Q 031361 102 EFMRRMPHVWDDG-ALLLGHEKT--SVFFVDAKSGGMICSHES 141 (161)
Q Consensus 102 ~~V~ssP~v~~dg-~VyvGs~d~--~lyalDa~TG~~~W~~~~ 141 (161)
.....+|..+.|+ .+++.+.++ ..+.++..+|+..+....
T Consensus 364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 364 TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 1234567776554 466666543 334455578888877654
No 82
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.79 E-value=0.9 Score=33.87 Aligned_cols=90 Identities=11% Similarity=0.031 Sum_probs=66.3
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceeccee
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPH 109 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~ 109 (161)
.+.+++||.|..|+.++. .+.++++...+.+.+-... .+.-|.|+.+.|.+=.++. ..+.|+.+.+..+.+.-.
T Consensus 15 ~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~-~~~~F~Y~l~NGTVGvY~~---~~RlWRiKSK~~~~~~~~ 88 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSL-GGGRFAYALANGTVGVYDR---SQRLWRIKSKNQVTSMAF 88 (111)
T ss_pred cceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEc-CCCEEEEEecCCEEEEEeC---cceeeeeccCCCeEEEEE
Confidence 378999999999999997 4999999887766653333 3356788888888776653 455999999987766666
Q ss_pred EeeCC----eEEEEeeCCEE
Q 031361 110 VWDDG----ALLLGHEKTSV 125 (161)
Q Consensus 110 v~~dg----~VyvGs~d~~l 125 (161)
..-++ -+++|-.+|.+
T Consensus 89 ~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 89 YDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EcCCCCCceEEEEEecCCeE
Confidence 54332 47788877765
No 83
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.79 E-value=1.7 Score=38.28 Aligned_cols=107 Identities=14% Similarity=0.151 Sum_probs=63.6
Q ss_pred CCCEEEEEec-C--CeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEe-cCCC--CEEEEEECCCCCeeccccCcc
Q 031361 29 SGDLALVATL-N--GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVD-VGED--WKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~-D--G~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~-~~dd--g~Lyald~~tG~~~~w~~~~~ 101 (161)
.+..+++.+. + ..||..|..+|+..= +.........|... |+..++. ...+ .++|.+|..+|..+++.. .
T Consensus 206 DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~--~ 282 (427)
T PRK02889 206 DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ--S 282 (427)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC--C
Confidence 4555555543 3 359999999997652 22111222345443 5544332 2222 369999988887644432 3
Q ss_pred cceecceeEeeCCe-EEEEeeC---CEEEEEECCCCcEEEE
Q 031361 102 EFMRRMPHVWDDGA-LLLGHEK---TSVFFVDAKSGGMICS 138 (161)
Q Consensus 102 ~~V~ssP~v~~dg~-VyvGs~d---~~lyalDa~TG~~~W~ 138 (161)
..+..+|..+.||. +++.|.. ..+|.+|..+|+....
T Consensus 283 ~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 283 SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 34667888876664 5655533 3799999888875443
No 84
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.76 E-value=1 Score=40.31 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=79.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+.++..|+.|++++.-|.++|+..=+++.... |.+...-.|+..++....|+.+...|..+|..+ -...+.+....+
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSA 335 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCC
Confidence 458999999999999999999999999987664 443322235556666566889999999999842 001111111111
Q ss_pred ee----EeeCC-eEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 108 PH----VWDDG-ALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 108 P~----v~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
|+ ...++ .++.++.|+.+-.-|..+|+.+-.+.....
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 33 22333 467888999999999999998888776544
No 85
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.71 E-value=0.16 Score=50.15 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=69.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC----------Cee--------cceEeeCC-------CeEEecC--CCC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK----------PIY--------SSFTRNDP-------DFYVDVG--EDW 81 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~----------~i~--------ssp~~~d~-------~~~V~~~--ddg 81 (161)
---.||+|--||.|||+|+.+|.++..|-... |-+ ++|.+.|. .+.++.. .+.
T Consensus 581 R~~~VyvgandGmLhaFd~~tG~E~fA~~P~avl~~l~~~t~~~y~~h~yyVDg~p~~~da~~ng~wrsvL~g~~G~GG~ 660 (1036)
T COG3419 581 RAPVVYVGANDGMLHAFDANTGSERFAYVPSAVLSTLHSLTAPGYTAHQYYVDGSPTAADAYDNGQWRSVLVGGLGAGGR 660 (1036)
T ss_pred ccceEEEecCCceeeeccCCccceeeecCcHHHHhhhhhhcCCCcccccceecCCceeehhhcCCcceEEEEeecCCCCc
Confidence 34689999999999999999999999986322 222 22222211 2344433 345
Q ss_pred EEEEEECCCC-----CeeccccCccc-----ceecceeEe--eCCe--EEEEeeCCE------EEEEECCCCcEE
Q 031361 82 KLYFHRKGIG-----KMKKPSIDVGE-----FMRRMPHVW--DDGA--LLLGHEKTS------VFFVDAKSGGMI 136 (161)
Q Consensus 82 ~Lyald~~tG-----~~~~w~~~~~~-----~V~ssP~v~--~dg~--VyvGs~d~~------lyalDa~TG~~~ 136 (161)
-|||||..+- .+ .|.....+ .+.+.|.|. +|+. |++|.-..+ ++.+|..++..-
T Consensus 661 glyALDVTdP~~~~~~~-Lw~~~~~d~~~LG~t~gkP~Iv~l~~gswavl~GNGynS~~n~~al~~~~L~t~~~~ 734 (1036)
T COG3419 661 GLYALDVTDPDFSNSNL-LWENNSNDDPDLGYTMGKPRIVPLHDGSWAVLLGNGYNSPANGAALLVLNLLTLDAT 734 (1036)
T ss_pred eeEEEEccCccccCCcc-hhcccCCCccccccccCCCeEEEcCCCceEEEEccCCCCCCCCcceEEEEeecCCcc
Confidence 6999997543 45 77766553 477888873 3453 777865444 788887777543
No 86
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=94.62 E-value=1.5 Score=39.00 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=82.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc--Cccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI--DVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~--~~~~~V~ 105 (161)
....+-.|..|-.-|.-+..+|+..=...--+ .+....-..|+.+..-+.-+|.+..+...+|.. +|++ ++.+.+.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-~~~~~~e~~dieW 153 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-QWKLDQEVEDIEW 153 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-EEEeecccCceEE
Confidence 56677777778777888888887333332111 232222223555555555578999999999999 8877 5555433
Q ss_pred c--ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCcee
Q 031361 106 R--MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPMKK 156 (161)
Q Consensus 106 s--sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~ 156 (161)
- =| .. ..+..|+.||++..-.+-++.....|......-+.|--.|=-|
T Consensus 154 l~WHp--~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 154 LKWHP--RA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK 203 (399)
T ss_pred EEecc--cc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence 3 33 21 4467899999999999999888888888666666665555433
No 87
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.56 E-value=0.99 Score=38.23 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=44.4
Q ss_pred cCCCCCCCCCCC-CCCCEEEEEe--cCCeEEEEeCCCCceeEEEecCCCe----ecceEeeCCCeEEecCCC--------
Q 031361 16 SSLPPTSPRASP-ESGDLALVAT--LNGTVHLVDTKRGESRWSFSMGKPI----YSSFTRNDPDFYVDVGED-------- 80 (161)
Q Consensus 16 ~~~~~~~~~~s~-~~~~~V~vgs--~DG~lyAvd~~tG~~~W~f~t~~~i----~ssp~~~d~~~~V~~~dd-------- 80 (161)
+++|.+...... +.++.||+.. ..-.++.+|....+..|+-...-|. .....+.++.+||-++.+
T Consensus 2 ~~lp~~~~~~~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~ 81 (346)
T TIGR03547 2 PDLPVGFKNGTGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSP 81 (346)
T ss_pred CCCCccccCceEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcc
Confidence 345544443444 5688888842 2246788887666667987554321 122234477788755421
Q ss_pred ---CEEEEEECCCC
Q 031361 81 ---WKLYFHRKGIG 91 (161)
Q Consensus 81 ---g~Lyald~~tG 91 (161)
..++.+|+.+.
T Consensus 82 ~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 82 QVFDDVYRYDPKKN 95 (346)
T ss_pred eecccEEEEECCCC
Confidence 25888898765
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.51 E-value=0.54 Score=42.40 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=84.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce-
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP- 108 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP- 108 (161)
.-.++-|=.|++|++.|.+++...-+.+.++.|.+--...++.-..-|..|-.+-.+|..+-.+ +-.|++.++-.++-
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccE-EEEeecccccccccc
Confidence 4445577789999999999999999999999777654444554444445444777778776666 77777776543322
Q ss_pred ---eEe-eCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 109 ---HVW-DDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 109 ---~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+++ ++.-|-.||.||++|.=+..|||+..+......++
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~ 432 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA 432 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc
Confidence 122 22336679999999999999999999988776663
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.48 E-value=0.77 Score=44.56 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=67.7
Q ss_pred CCCCCCCCCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecC-CCCEEEEEECCCCCeeccccC
Q 031361 22 SPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVG-EDWKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 22 ~~~~s~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~-ddg~Lyald~~tG~~~~w~~~ 99 (161)
..+|||+. |.|-+|..||+|+-.|.+.++.+=+|+-+ ++|.+-.-..||.-.+-.+ ..|.+...|.+.-++++--..
T Consensus 207 ~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n 285 (910)
T KOG1539|consen 207 AIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN 285 (910)
T ss_pred EeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec
Confidence 35777765 67888999999999999999999999987 7777655445664333322 235677777766555222222
Q ss_pred cc-cceecceeEeeCCeEEEEeeCC--EEEEEECCCC
Q 031361 100 VG-EFMRRMPHVWDDGALLLGHEKT--SVFFVDAKSG 133 (161)
Q Consensus 100 ~~-~~V~ssP~v~~dg~VyvGs~d~--~lyalDa~TG 133 (161)
++ +.|..+-+..+...+...+.|+ .++..|.-+|
T Consensus 286 ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg 322 (910)
T KOG1539|consen 286 AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG 322 (910)
T ss_pred cccCCcccceecCCCceEeeccCCCceeEEEeeCCCC
Confidence 33 2233333333334333334454 3455564444
No 90
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.29 E-value=1.2 Score=42.96 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=91.4
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
..+..+..|..||+|.--|..+|-=.=+|.-...-+...... .+...+-..-||.+.|+|.+.++- -..|+..++++-
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~Qf 438 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQF 438 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceee
Confidence 466788899999999999999998888886544333323322 445555555577999999998888 677888888887
Q ss_pred ceeEee--CCeEEEEeeCC-EEEEEECCCCcEEEEecCCCCCCCcCCCCCc
Q 031361 107 MPHVWD--DGALLLGHEKT-SVFFVDAKSGGMICSHESDNSASTLGSGLPM 154 (161)
Q Consensus 107 sP~v~~--dg~VyvGs~d~-~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~ 154 (161)
+-+-.| ...|+.|+.|. .+|..+..||+++=.....+.+...-.-.|+
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 766544 35678899887 7899999999999877766655543333333
No 91
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.20 E-value=0.62 Score=42.23 Aligned_cols=112 Identities=15% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe-cCCCeecceEee--CCCeEEecCCCCEEEEEECC---CCCeeccccCcc-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKG---IGKMKKPSIDVG- 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~-t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~---tG~~~~w~~~~~- 101 (161)
..+++.-||.|-+|-.-|..+|++.=++. .+++|.+. ... ...+.+.++-|+.+...|-+ .-.. .|++..+
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l-~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~-~wk~~g~V 332 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTL-EWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK-EWKFDGEV 332 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEE-EecCCCceEEEeccccceEEeeeccCccccCc-eEEeccce
Confidence 56788899999999999999999999987 45555542 222 22455555556577666654 3333 6777766
Q ss_pred cceecceeEeeCCeEEEEeeCCEEEEEECC-CCcEEEEecCCCC
Q 031361 102 EFMRRMPHVWDDGALLLGHEKTSVFFVDAK-SGGMICSHESDNS 144 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~d~~lyalDa~-TG~~~W~~~~~~~ 144 (161)
+.|.=-|.-. ...++|+.||++|-+|++ .|+.+|+....+.
T Consensus 333 Ekv~w~~~se--~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~ 374 (463)
T KOG0270|consen 333 EKVAWDPHSE--NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD 374 (463)
T ss_pred EEEEecCCCc--eeEEEecCCceEEeeecCCCCCceeEEEeccC
Confidence 2233344432 447789999999999965 5699999775443
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.17 E-value=1.1 Score=41.04 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEecCCeEEEEeCCCC-ceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccC-cccc
Q 031361 26 SPESGDLALVATLNGTVHLVDTKRG-ESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSID-VGEF 103 (161)
Q Consensus 26 s~~~~~~V~vgs~DG~lyAvd~~tG-~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~-~~~~ 103 (161)
+|..+-+|+.|+-||+|..-|.++- .++-++..+.||.+--....+..++-++ |.++-..|..+|....-.+. =...
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~Kt 240 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKT 240 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccce
Confidence 3567779999999999999998887 6777777888887655555667777765 43777778876655222222 2234
Q ss_pred eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 104 MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
|.+--+..+.-+++-|+-|+++-+.|..+=|.+..++..+
T Consensus 241 VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~ 280 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG 280 (487)
T ss_pred EEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc
Confidence 5554444544568999999999999988888886665443
No 93
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=94.13 E-value=1.6 Score=37.76 Aligned_cols=114 Identities=22% Similarity=0.179 Sum_probs=74.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-----------CC-------------------------
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-----------DP------------------------- 71 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-----------d~------------------------- 71 (161)
..+...+-+|-||+++--|..+|+..=+|.--..-+-+.++. |.
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 477889999999999999999999999986433211111111 11
Q ss_pred ----------CeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEE-EEeeCCEEEEEECCCCcEEEEec
Q 031361 72 ----------DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALL-LGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 72 ----------~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~Vy-vGs~d~~lyalDa~TG~~~W~~~ 140 (161)
..+|-++.|..+-..|.++=++ +-.+-.+.-...+-.++-||.+. -|.+|+.++..|...||-+..++
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence 1233334444555555554444 44444455556666666677765 48899999999999988877766
Q ss_pred CC
Q 031361 141 SD 142 (161)
Q Consensus 141 ~~ 142 (161)
..
T Consensus 232 a~ 233 (315)
T KOG0279|consen 232 AF 233 (315)
T ss_pred CC
Confidence 43
No 94
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.11 E-value=0.6 Score=41.70 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=63.9
Q ss_pred CCCEEEEEec-C--CeEEEEeCCCCceeEEEecCCC---eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc
Q 031361 29 SGDLALVATL-N--GTVHLVDTKRGESRWSFSMGKP---IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 29 ~~~~V~vgs~-D--G~lyAvd~~tG~~~W~f~t~~~---i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
.+..+++++. | .++|.+|..||+.. ++ |+++ ..+.....+++-++|..++.+|+++|..|+++ +--+.+.+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~-QL-Tdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~p~ 122 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEIT-QL-TDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEVPD 122 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEE-E----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE--T
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEE-EC-ccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEECCc
Confidence 4545555554 4 48999999999875 33 3322 33333334555556665556999999999998 55555554
Q ss_pred cee--cceeEeeCCeEEEEee-----------------------CCEEEEEECCCCcEEEEecCCCCCC
Q 031361 103 FMR--RMPHVWDDGALLLGHE-----------------------KTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 103 ~V~--ssP~v~~dg~VyvGs~-----------------------d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
-.. .+-++..|++.++|.. ...++.||.+||+..=.+....-..
T Consensus 123 ~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlg 191 (386)
T PF14583_consen 123 DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLG 191 (386)
T ss_dssp TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EE
T ss_pred ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCcccc
Confidence 433 2444455677777732 3479999999999887777655433
No 95
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.09 E-value=0.33 Score=40.50 Aligned_cols=106 Identities=15% Similarity=0.110 Sum_probs=50.3
Q ss_pred EEEEecCCeEEEEeCCCCce-eEEEecCCC---ee-cceEee-CC--C-eEEecCCCCEEEEEECCCCCeecc--ccCcc
Q 031361 33 ALVATLNGTVHLVDTKRGES-RWSFSMGKP---IY-SSFTRN-DP--D-FYVDVGEDWKLYFHRKGIGKMKKP--SIDVG 101 (161)
Q Consensus 33 V~vgs~DG~lyAvd~~tG~~-~W~f~t~~~---i~-ssp~~~-d~--~-~~V~~~ddg~Lyald~~tG~~~~w--~~~~~ 101 (161)
-++...+|.||||+. +|++ +|.-.+.+. +. ....+. .+ + -.|....+|.||+++ .+|.+.++ +....
T Consensus 85 ~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~-~dg~~~~~~~p~~~~ 162 (229)
T PF14517_consen 85 FIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT-PDGRLYRRYRPDGGS 162 (229)
T ss_dssp EEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE-TTE-EEEE---SSTT
T ss_pred EEEecCCccEEEecc-ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEc-CCCceEEeCCCCCCC
Confidence 345567899999998 6886 443333222 11 111221 11 1 123444567899998 44544344 22222
Q ss_pred -cceecceeEeeCC----eEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 102 -EFMRRMPHVWDDG----ALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 102 -~~V~ssP~v~~dg----~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.....+-++.+++ ..++++-+++||+| ...|++ |++...
T Consensus 163 ~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V-~~~G~l-yr~~~p 206 (229)
T PF14517_consen 163 DRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAV-KSNGKL-YRGRPP 206 (229)
T ss_dssp --HHHH-EEEESSSGGGEEEEEE-TTS-EEEE--ETTEE-EEES--
T ss_pred CccccccceeccCCcccceEEeeCCCCcEEEE-ecCCEE-eccCCc
Confidence 2355666666544 34567889999999 467776 776654
No 96
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=93.95 E-value=0.8 Score=43.40 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=74.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.++-...+|.|-=.|..+++++-.++. +++|.+-.....+ +.-|+| |||.+|.++..++++..-+ ... .+.
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc-ddGvl~~~s~~p~~I~~~r-~l~--rq~ 154 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC-DDGVLYDFSIGPDKITYKR-SLM--RQK 154 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeec-CCceEEEEecCCceEEEEe-ecc--ccc
Confidence 588899999999999999999999988875 5567754333233 567888 4559999999999882222 211 111
Q ss_pred ceeE----eeCCe-EEEEeeCCEEEEEECCCCcEEE
Q 031361 107 MPHV----WDDGA-LLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 107 sP~v----~~dg~-VyvGs~d~~lyalDa~TG~~~W 137 (161)
+=++ ..+++ ++.||.||.+.+-|+++|..+.
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence 2221 11243 8899999999999999998877
No 97
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=0.38 Score=46.61 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=29.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCe
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPI 62 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i 62 (161)
..++++.|.+|+|.|+|...|+..|+.-.+.+.
T Consensus 451 ~K~iIvlT~tGkiFglds~~G~i~Wkl~L~~~~ 483 (910)
T KOG2103|consen 451 RKMIIVLTSTGKIFGLDSVDGQIHWKLWLPNVQ 483 (910)
T ss_pred eeEEEEEecCceEEEEEcCCCeEEEEEecCccc
Confidence 347899999999999999999999999876654
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=93.86 E-value=1.1 Score=39.00 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=71.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.+..+++|+.||.|.-+|..+|+..=--.-+.++..---......+|-++-|..+-.+|+.+ +.+.-.++.++.|-++-
T Consensus 64 d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~~~~~d~~kkVy~~~ 142 (323)
T KOG1036|consen 64 DESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVVVGTFDQGKKVYCMD 142 (323)
T ss_pred CCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-cccccccccCceEEEEe
Confidence 45699999999999999999988754333344444221122335566666777888889876 33355666666677666
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
+.. ++++||..+-.+..-|.++=+.
T Consensus 143 v~g--~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 143 VSG--NRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred ccC--CEEEEeecCceEEEEEcccccc
Confidence 543 5689999999999888776543
No 99
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=93.85 E-value=1.1 Score=39.89 Aligned_cols=123 Identities=16% Similarity=0.195 Sum_probs=86.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC---CeecceEeeC-CCeEEecCCCCEEEEEECCCCCeeccccC-----
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK---PIYSSFTRND-PDFYVDVGEDWKLYFHRKGIGKMKKPSID----- 99 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~~~d-~~~~V~~~ddg~Lyald~~tG~~~~w~~~----- 99 (161)
.+..++.+|.||++..-+.+|++-.=+|+..+ ++.+-..... ...+|-|.....+|..+- .|.++| .|+
T Consensus 359 dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVr-sfsSGkRE 436 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVR-SFSSGKRE 436 (508)
T ss_pred CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEe-eeccCCcc
Confidence 67889999999999999999999998888644 3333222333 356777877778888774 355523 333
Q ss_pred cccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCc
Q 031361 100 VGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPM 154 (161)
Q Consensus 100 ~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~ 154 (161)
-+++|.+.-.-. ..-+|.-.+|+.|||....+|++.......+.-.-.-+|-|-
T Consensus 437 gGdFi~~~lSpk-GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 437 GGDFINAILSPK-GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred CCceEEEEecCC-CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence 334555432222 256898889999999999999999988776666555555553
No 100
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.79 E-value=1 Score=38.71 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=69.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
.+|.++.-+.-+.|--.|+++=+++=+|+..--|.+...-.+...||-+++|..+|.+|-.||.. +-.+.-+ .-.|
T Consensus 194 ~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE-i~~~nkg---h~gp 269 (334)
T KOG0278|consen 194 QDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE-IGSYNKG---HFGP 269 (334)
T ss_pred cCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCce-eeecccC---CCCc
Confidence 57777777777888888998888888888766666655555667899888999999999999988 4333111 1133
Q ss_pred eE----eeCCeEE-EEeeCCEEEEEECCCCcEEEEecCCCCC
Q 031361 109 HV----WDDGALL-LGHEKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 109 ~v----~~dg~Vy-vGs~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
+. +-||-+| .||.||++. +|+.....+.
T Consensus 270 VhcVrFSPdGE~yAsGSEDGTir---------lWQt~~~~~~ 302 (334)
T KOG0278|consen 270 VHCVRFSPDGELYASGSEDGTIR---------LWQTTPGKTY 302 (334)
T ss_pred eEEEEECCCCceeeccCCCceEE---------EEEecCCCch
Confidence 32 2235455 455555553 4777665554
No 101
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.79 E-value=2.7 Score=41.89 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=62.8
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecC--------------C----CeecceE---e-eCCCeEEecCCCCEEEE
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMG--------------K----PIYSSFT---R-NDPDFYVDVGEDWKLYF 85 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~--------------~----~i~ssp~---~-~d~~~~V~~~ddg~Lya 85 (161)
.++.+|+++. ++.|+.+|..+|+..|....+ + ....+|. + .++++||-...++.+..
T Consensus 750 dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv 829 (1057)
T PLN02919 750 DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK 829 (1057)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE
Confidence 3455776655 589999999888866532110 0 0011221 1 24566776666667777
Q ss_pred EECCCCCeeccccCccc----------ceeccee---EeeCCeEEEEe-eCCEEEEEECCCCcEEEE
Q 031361 86 HRKGIGKMKKPSIDVGE----------FMRRMPH---VWDDGALLLGH-EKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~----------~V~ssP~---v~~dg~VyvGs-~d~~lyalDa~TG~~~W~ 138 (161)
+|..+|.. ......+. .-...|. +..||.+||.. .++.+..+|..+|+..-.
T Consensus 830 iD~~tg~v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~~~ 895 (1057)
T PLN02919 830 LDPATKRV-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEI 895 (1057)
T ss_pred EECCCCeE-EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcccee
Confidence 77777665 32222211 0012343 45567888865 677899999999986433
No 102
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.65 E-value=0.3 Score=43.85 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=66.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCC----------CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK----------PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~----------~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~ 97 (161)
..+..+--|+.||.|..-|+++|+++=+--.+. |++-.| +-..+.-++.||.+...|..-|+. ...
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p---~~r~las~skDg~vrIWd~~~~~~-~~~ 242 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP---PCRRLASSSKDGSVRIWDTKLGTC-VRT 242 (480)
T ss_pred CCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC---CccceecccCCCCEEEEEccCceE-EEE
Confidence 366667789999999999999998763221111 111111 112233334454555444444433 111
Q ss_pred cCcccceeccee--E--eeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 98 IDVGEFMRRMPH--V--WDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 98 ~~~~~~V~ssP~--v--~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
...+ ..|+ + -++|.+|-||.|.++-.-++..|+....++...|-.
T Consensus 243 lsgH----T~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwv 291 (480)
T KOG0271|consen 243 LSGH----TASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWV 291 (480)
T ss_pred eccC----ccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchhe
Confidence 1111 1222 2 236889999999999999999999998888765543
No 103
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=93.60 E-value=1.7 Score=40.41 Aligned_cols=124 Identities=14% Similarity=0.201 Sum_probs=90.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC----eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP----IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~----i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.+.+....+.||++|++|-+||+.+=.++.+.+ |++-.=..|..-++-++.|-..-..|..++++ .-.+.++..|
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl-v~t~~~~~~v 279 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL-VSTWPMGSTV 279 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce-EEEeecCCch
Confidence 578888889999999999999999999985433 33322123667777777776777778888877 4455554443
Q ss_pred ec--ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCC
Q 031361 105 RR--MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLP 153 (161)
Q Consensus 105 ~s--sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~ 153 (161)
+- --+++.++.++.-|-+|+|--+++.++++............-.+-+|
T Consensus 280 ~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 280 EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 32 34466667899999999999999999998888887766655555444
No 104
>PHA02713 hypothetical protein; Provisional
Probab=93.53 E-value=0.84 Score=42.07 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=53.0
Q ss_pred eEEEEeCCCCceeEEEecCCC---eecceEeeCCCeEEecCCC------CEEEEEECCC-CCeecccc--Ccccceecce
Q 031361 41 TVHLVDTKRGESRWSFSMGKP---IYSSFTRNDPDFYVDVGED------WKLYFHRKGI-GKMKKPSI--DVGEFMRRMP 108 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~t~~~---i~ssp~~~d~~~~V~~~dd------g~Lyald~~t-G~~~~w~~--~~~~~V~ssP 108 (161)
.++++|+.+. .|+.-..-+ ...+.++.++.+||-++.+ ..++++|+.+ . .|.. .+........
T Consensus 433 ~ve~YDP~td--~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVNN--IWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN---GWELITTTESRLSALH 507 (557)
T ss_pred eEEEECCCCC--eEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC---CeeEccccCcccccce
Confidence 4788888776 587644321 2223344477777654421 2467889887 4 4532 3333333444
Q ss_pred eEeeCCeEE-EEeeCC--EEEEEECCCCcE
Q 031361 109 HVWDDGALL-LGHEKT--SVFFVDAKSGGM 135 (161)
Q Consensus 109 ~v~~dg~Vy-vGs~d~--~lyalDa~TG~~ 135 (161)
++.-++.|| +|..++ .+-+-|+.|.+.
T Consensus 508 ~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 508 TILHDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEECCEEEEEeeecceeehhhcCcccccc
Confidence 443357888 688787 777888888764
No 105
>PRK01029 tolB translocation protein TolB; Provisional
Probab=93.47 E-value=4.2 Score=36.11 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=60.2
Q ss_pred EEEEEecCC--eEEEEeCC--CCcee-EEEecCCCeecceEe-eCCCeEEecCC---CCEEEEEECCCCCeeccccCccc
Q 031361 32 LALVATLNG--TVHLVDTK--RGESR-WSFSMGKPIYSSFTR-NDPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 32 ~V~vgs~DG--~lyAvd~~--tG~~~-W~f~t~~~i~ssp~~-~d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~~ 102 (161)
++|+.+.+| .||.++.. +|++. -+.. +..+ ..|.. .|++.+++... ..++|.+|..+|+.+++... .
T Consensus 295 Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~-~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~--~ 370 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNS-SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS--P 370 (428)
T ss_pred EEEEECCCCCceEEEEECcccccceEEeccC-CCCc-cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC--C
Confidence 344444555 57776653 23222 2221 1112 23443 35665555432 24799999999988554322 2
Q ss_pred ceecceeEeeCCe-EEEE-ee--CCEEEEEECCCCcEEEEecCCC
Q 031361 103 FMRRMPHVWDDGA-LLLG-HE--KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 103 ~V~ssP~v~~dg~-VyvG-s~--d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.-..+|..+.||. +++. .. +..+|.+|..+|+...-+...+
T Consensus 371 ~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g 415 (428)
T PRK01029 371 ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSG 415 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 2345688776654 4443 32 4689999999998876665443
No 106
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=2.8 Score=36.59 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=73.8
Q ss_pred CCCCEEEEEec---CCeEEEEeCCCCceeEEEecCC-CeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCccc
Q 031361 28 ESGDLALVATL---NGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 28 ~~~~~V~vgs~---DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
..++.+|++.. ++++..+|..++++.=+...+. |... ....++ .+|+-..+++.+..+|..+-.+.++.-...-
T Consensus 125 ~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~-a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~ 203 (381)
T COG3391 125 PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGV-AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV 203 (381)
T ss_pred CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceE-EECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc
Confidence 36779999998 7999999999999886666664 4111 111233 3777666677999999776666223322233
Q ss_pred ceeccee---EeeCC-eEEEEeeC---CEEEEEECCCCcEEEE
Q 031361 103 FMRRMPH---VWDDG-ALLLGHEK---TSVFFVDAKSGGMICS 138 (161)
Q Consensus 103 ~V~ssP~---v~~dg-~VyvGs~d---~~lyalDa~TG~~~W~ 138 (161)
.+...|. +..|+ .+|+--.. .++..+|..+++..+.
T Consensus 204 ~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 204 GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 4555665 33333 47765444 5999999999999987
No 107
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.28 E-value=2.8 Score=37.67 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=84.5
Q ss_pred CCCCCCCEEEEEecCC--eEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCC-CC--EEEEEECCCCCeecccc
Q 031361 25 ASPESGDLALVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGE-DW--KLYFHRKGIGKMKKPSI 98 (161)
Q Consensus 25 ~s~~~~~~V~vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d-dg--~Lyald~~tG~~~~w~~ 98 (161)
-||--.-+++....|| .||..|..+++ .++...+..+-.+|... |++.+++..| +| .+|..+...+..++..+
T Consensus 245 fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 245 FSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec
Confidence 3344456777778888 57999997655 88876666666666654 7777777654 22 58888888887777777
Q ss_pred CcccceecceeEeeCCe--EEEEeeCCE--EEEEECCCCcEEEEecCCCCCCCcCCCCCceeeee
Q 031361 99 DVGEFMRRMPHVWDDGA--LLLGHEKTS--VFFVDAKSGGMICSHESDNSASTLGSGLPMKKSFV 159 (161)
Q Consensus 99 ~~~~~V~ssP~v~~dg~--VyvGs~d~~--lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~~ 159 (161)
..++.. .|..+-||. +|.++.+|. +...|+.+|.- |+--+.....+.-+--|--+.++
T Consensus 324 ~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 324 SGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred cCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEE
Confidence 777655 788766665 444543454 77777877776 55554444444444444444333
No 108
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=93.05 E-value=0.65 Score=42.50 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=72.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCee-cceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY-SSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~-ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+-..+-++-|+.|..-|.+||+.+=+|+++.++. -.+...+...|+-++.|+++...|.++|+++.-.-.--+.|..-
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i 348 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDI 348 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeee
Confidence 56778899999999999999999999999998755 22222232455544556699999999999832222222345555
Q ss_pred eeEeeCCeEEE-EeeCCEEEEEECCCCcEEE
Q 031361 108 PHVWDDGALLL-GHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 108 P~v~~dg~Vyv-Gs~d~~lyalDa~TG~~~W 137 (161)
-++.+ |.=|+ .|.|+++..-+-.++..+.
T Consensus 349 ~F~~~-g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 349 TFVDE-GRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred EEccC-CceEeeeccCccEEEEEcCCCccch
Confidence 55555 55554 5566777666655555543
No 109
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.95 E-value=5.2 Score=34.03 Aligned_cols=111 Identities=11% Similarity=0.066 Sum_probs=69.5
Q ss_pred CCCEEEEEecC---CeEEEEeCCCCceeEEEecCCCeecc-eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~~i~ss-p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.+|.+|.+|-- -.|+-+|..||+++.+.+.+....+- .++.++.+|.=.-..+..+.+|+.|-+. .-.++...
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~-~~~~~y~~-- 130 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK-IGTFPYPG-- 130 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEE-EEEEE-SS--
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceE-EEEEecCC--
Confidence 56777776632 27899999999999999888765532 2344566666665666888888887655 22332221
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
++=-+..++..+++.....+||-+|++|=+++.+....
T Consensus 131 EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 131 EGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp S--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred cceEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 22222244456777778889999999999998887654
No 110
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.84 E-value=1.6 Score=40.05 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=56.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
.+..+.+....|.||.+.++|++.+=+|+..+.+...--..|+.-++-++.+|++|.+|..+-+. .-+|.-.+-|
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~-~~rf~D~G~v 388 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC-LHRFVDDGSV 388 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce-EEEEeecCcc
Confidence 56788889999999999999999999999999877654445666555565677999999877665 3344333334
No 111
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=92.76 E-value=2.9 Score=36.50 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.++.||-|.+.-.-|.++|+..=.|.-- +.+.+-.... +.+.||-++-|..-+..|.+.|.- +-.|..++--..
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDIN 233 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDIN 233 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce-eEeecccccccc
Confidence 6889999999999999999999999999632 2343322222 567888777777778789999977 777777765444
Q ss_pred ceeEeeCCe-EEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 107 MPHVWDDGA-LLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 107 sP~v~~dg~-VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+-...-+|. +-.||.|++....|.+....+-.|..+....
T Consensus 234 sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 234 SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 444433454 4579999999999999999999999655443
No 112
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.74 E-value=3.7 Score=35.37 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=71.5
Q ss_pred EEEEEecCCeEEEEeCCCC-ceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCe-eccccCcccceeccee
Q 031361 32 LALVATLNGTVHLVDTKRG-ESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM-KKPSIDVGEFMRRMPH 109 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG-~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~-~~w~~~~~~~V~ssP~ 109 (161)
++++--..+.||.+|+.+| +..|...-. +.+-..+.++...|.|..+ ++.++.++|.. ..+.-.-.+.-...|-
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~--~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGG--FSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCC--cccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCC
Confidence 5666777788899998877 555655332 2222223334466666555 34445565655 2222222222223342
Q ss_pred ---EeeCCeEEEEeeC------------CEEEEEECCCCcEEEEecCCCCCCCcCCCCCceeeee
Q 031361 110 ---VWDDGALLLGHEK------------TSVFFVDAKSGGMICSHESDNSASTLGSGLPMKKSFV 159 (161)
Q Consensus 110 ---v~~dg~VyvGs~d------------~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~~ 159 (161)
+.-+|.+|||+.. +++|-+|+ .|..+......-..+|.-.=+|=.|.+.
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEE
Confidence 3445889998876 57999998 5777777766666666666666555443
No 113
>PHA02713 hypothetical protein; Provisional
Probab=92.65 E-value=2.3 Score=39.28 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=57.2
Q ss_pred CCCCEEEE-EecCC-----eEEEEeCCCCceeEEEecCCC--ee-cceEeeCCCeEEecCCC------------------
Q 031361 28 ESGDLALV-ATLNG-----TVHLVDTKRGESRWSFSMGKP--IY-SSFTRNDPDFYVDVGED------------------ 80 (161)
Q Consensus 28 ~~~~~V~v-gs~DG-----~lyAvd~~tG~~~W~f~t~~~--i~-ssp~~~d~~~~V~~~dd------------------ 80 (161)
+.+|.+|+ |..+| .+.++|..+. .|+.-..-| .. .+..+.++.+||-++.+
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 35667764 55544 3788888776 598744322 22 22234477777644322
Q ss_pred -----CEEEEEECCCCCeeccccC--cccc-eecceeEeeCCeEEE-EeeC------CEEEEEECCC-CcEEEEe
Q 031361 81 -----WKLYFHRKGIGKMKKPSID--VGEF-MRRMPHVWDDGALLL-GHEK------TSVFFVDAKS-GGMICSH 139 (161)
Q Consensus 81 -----g~Lyald~~tG~~~~w~~~--~~~~-V~ssP~v~~dg~Vyv-Gs~d------~~lyalDa~T-G~~~W~~ 139 (161)
..++++|+.+. .|..- +... ...+-++. ++.+|+ |..+ ..+++.|+.+ .+ |+.
T Consensus 427 ~~~~~~~ve~YDP~td---~W~~v~~m~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~ 495 (557)
T PHA02713 427 DTHSSNKVIRYDTVNN---IWETLPNFWTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WEL 495 (557)
T ss_pred cccccceEEEECCCCC---eEeecCCCCcccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCC--eeE
Confidence 25888898876 45422 2111 22223344 477885 6543 3467888887 44 553
No 114
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.15 E-value=0.8 Score=40.94 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=48.6
Q ss_pred EEeCCCCceeEEEecCCCeecceE-------eeCCCeEEecCC---CCEEEEEECCCCCeeccccCcccceecceeE-ee
Q 031361 44 LVDTKRGESRWSFSMGKPIYSSFT-------RNDPDFYVDVGE---DWKLYFHRKGIGKMKKPSIDVGEFMRRMPHV-WD 112 (161)
Q Consensus 44 Avd~~tG~~~W~f~t~~~i~ssp~-------~~d~~~~V~~~d---dg~Lyald~~tG~~~~w~~~~~~~V~ssP~v-~~ 112 (161)
=.|+.||..+=++ |..+..++.. ..|++-.+..++ ..+||.+|..+|+...+....++..- ..++ .+
T Consensus 14 ~~D~~TG~~VtrL-T~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~ 91 (386)
T PF14583_consen 14 WIDPDTGHRVTRL-TPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPD 91 (386)
T ss_dssp EE-TTT--EEEE--S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TT
T ss_pred EeCCCCCceEEEe-cCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecC
Confidence 3688888888776 4444433322 225554544443 67899999999998666664433222 2333 23
Q ss_pred CCeE-EEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 113 DGAL-LLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 113 dg~V-yvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+..+ |+- .+.+|++||.+|++..--|...+...
T Consensus 92 ~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 92 DRALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp SSEEEEEE-TTTEEEEEETTT--EEEEEE--TTEE
T ss_pred CCeEEEEE-CCCeEEEEECCcCcEEEEEECCcccc
Confidence 3444 454 34599999999999876666555443
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.96 E-value=0.82 Score=41.45 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCCCEEEEEecCCeEEEEeCCC-CceeEEEecC-CCeecceEeeCC--CeEEecCCCCE--EEEEECCCCCeec-cccC
Q 031361 27 PESGDLALVATLNGTVHLVDTKR-GESRWSFSMG-KPIYSSFTRNDP--DFYVDVGEDWK--LYFHRKGIGKMKK-PSID 99 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~t-G~~~W~f~t~-~~i~ssp~~~d~--~~~V~~~ddg~--Lyald~~tG~~~~-w~~~ 99 (161)
+......++++.||+||-+|.++ |+++|+.+.- ++|.+ ...+.. ....-.+.++. |+-++..+++.++ ..+.
T Consensus 339 ~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISg-l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 339 PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISG-LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred CCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcce-EEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 34678889999999999999876 5999999874 34543 222211 11111112211 2223333332211 1223
Q ss_pred cccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 100 VGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 100 ~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
++.+--.++.......+-+|...+.+...|..|+..+
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3333333444444355557777777888887776554
No 116
>PRK01742 tolB translocation protein TolB; Provisional
Probab=91.79 E-value=6.1 Score=34.78 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=59.0
Q ss_pred CCEEE-EEecCC--eEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 30 GDLAL-VATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 30 ~~~V~-vgs~DG--~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
+..++ .++.+| .||-+|..+++.... +... + .+.. .|+..++....+ .++.+|..+|+.+.+.-. .-.
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~-~-~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~---~~~ 374 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG-Y-SAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSST---FLD 374 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC-C-CccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCC---CCC
Confidence 34344 444455 667777766655442 2211 2 2333 255555444444 577799999987443222 233
Q ss_pred cceeEeeCCe-EEEEeeCCEEEEEE--CCCCcEEEEecC
Q 031361 106 RMPHVWDDGA-LLLGHEKTSVFFVD--AKSGGMICSHES 141 (161)
Q Consensus 106 ssP~v~~dg~-VyvGs~d~~lyalD--a~TG~~~W~~~~ 141 (161)
.+|..+.||. +++++.++....++ ..+|+.+.++..
T Consensus 375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 5787776664 66677777554443 267888888764
No 117
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=91.66 E-value=3.3 Score=36.62 Aligned_cols=116 Identities=12% Similarity=0.060 Sum_probs=83.7
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
..+-+++.+|.|-.+-..|...|.++=++..++||.+.--.. +.+-.|-+.-...-+.++..+++...++.....-...
T Consensus 75 ~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~ 154 (405)
T KOG1273|consen 75 RDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNS 154 (405)
T ss_pred CCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccc
Confidence 478889999999999999999999999999999988643222 2223333322223555566666666666666666666
Q ss_pred cee---EeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 107 MPH---VWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 107 sP~---v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+|- .... +-+|.|...|.+..+|+.|=+.+-.|+..-
T Consensus 155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits 195 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS 195 (405)
T ss_pred ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech
Confidence 665 3222 458899999999999999999998887654
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=91.55 E-value=0.82 Score=41.64 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=33.2
Q ss_pred EecCCCCEEEEEECCCCCeeccccCccc-ceecceeEeeCCeEEEEeeCCEEEE
Q 031361 75 VDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRMPHVWDDGALLLGHEKTSVFF 127 (161)
Q Consensus 75 V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ssP~v~~dg~VyvGs~d~~lya 127 (161)
+.+..-|+||.....||.+ .-.+..+. .|..--+..|+..++.||+||.+++
T Consensus 97 ~ag~i~g~lYlWelssG~L-L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGIL-LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred EeecccCcEEEEEeccccH-HHHHHhhccceeEEEEeCCCcEEEecCCCccEEE
Confidence 3443566899999999988 54455553 3444444444344567999998765
No 119
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=91.35 E-value=2.6 Score=36.77 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCcee----EEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc-cCccc-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESR----WSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS-IDVGE- 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~----W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~-~~~~~- 102 (161)
.+..+|++..+|.+..++...+.+. |+-.--+.=.......++++...++||+.|-+.|.+.-+...|. -+.+.
T Consensus 132 ~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 132 SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 3455999999999998888776553 44222111111222223455556678999999998833332554 22221
Q ss_pred ---ceecceeEeeCCeEEEEeeCCEEEEEECC-CCcE
Q 031361 103 ---FMRRMPHVWDDGALLLGHEKTSVFFVDAK-SGGM 135 (161)
Q Consensus 103 ---~V~ssP~v~~dg~VyvGs~d~~lyalDa~-TG~~ 135 (161)
-|.++|- +.--|++||.|..+..+|.+ =||+
T Consensus 212 GV~SI~ss~~--~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 212 GVVSIYSSPP--KPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred ceEEEecCCC--CCceEEEeccccceeeeehhcccCc
Confidence 2444554 22358999999999999977 3444
No 120
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.30 E-value=5 Score=37.22 Aligned_cols=110 Identities=17% Similarity=0.104 Sum_probs=77.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
-+++++.||.|.++.-=|..+|+-.=.+.....+...-.. .+...+.++-|-.+++.+..+|+.+...-.-.+.|.+.=
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~-~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI-DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc-cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 3899999999999999999999888888744332222111 223344444566888889888888444322333444433
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
. . ++.++.||.|+++-.-|+.+|+.+.....
T Consensus 339 ~-~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~g 369 (537)
T KOG0274|consen 339 L-D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSG 369 (537)
T ss_pred e-c-CCEEEEEecCceEEEEEhhhceeeeeecC
Confidence 2 3 47899999999999999999999988876
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=91.26 E-value=3.3 Score=40.61 Aligned_cols=120 Identities=12% Similarity=0.011 Sum_probs=88.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCcee---EEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESR---WSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~---W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
...+..+.||.|+++......+|++- =+|.+ ||.-.....++...+.+++|-.+-.++..++..++---...++|
T Consensus 64 ~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl--p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV 141 (933)
T KOG1274|consen 64 CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL--PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV 141 (933)
T ss_pred ecccceEEeeccceEEEeeCCCCCccceeeeeec--cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence 36778899999999999988888754 23322 44433333466788888888888888888887745544555666
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLG 149 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~ 149 (161)
.+--+-.+++.+-+-+.||+++..|..+|.+.-.......+++..
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 665555555667788999999999999999998888776666655
No 122
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=91.00 E-value=1.5 Score=39.32 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=67.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC----CeecceE-----ee--CC------------------CeEE---e
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK----PIYSSFT-----RN--DP------------------DFYV---D 76 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~----~i~ssp~-----~~--d~------------------~~~V---~ 76 (161)
.+.-||.||.|++|..-|...|+..=+...-. .+.-+|. .+ |+ +.+| .
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLS 367 (460)
T ss_pred CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeee
Confidence 57889999999999999999999887653221 1111110 00 11 1111 1
Q ss_pred cCCCCEEEEEECCCCCeeccccCcccceecc------eeEeeCCeEEEEeeC-CEEEEEECCCCcEEEEecCCCCCCCcC
Q 031361 77 VGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM------PHVWDDGALLLGHEK-TSVFFVDAKSGGMICSHESDNSASTLG 149 (161)
Q Consensus 77 ~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss------P~v~~dg~VyvGs~d-~~lyalDa~TG~~~W~~~~~~~~~~~~ 149 (161)
..+| .+|....++|.+..|.++.+--.+.. -.+..+.-||..+.| +....|-.+++|-+.-|+-+++..+-.
T Consensus 368 ~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT~Et 446 (460)
T KOG0285|consen 368 VNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHATEET 446 (460)
T ss_pred eccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccCccc
Confidence 1233 24445556666666666555322222 111111225555433 456666677777776666666665544
Q ss_pred CCCCc
Q 031361 150 SGLPM 154 (161)
Q Consensus 150 ~~~~~ 154 (161)
-+++-
T Consensus 447 hPl~w 451 (460)
T KOG0285|consen 447 HPLNW 451 (460)
T ss_pred CCcCC
Confidence 44443
No 123
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=90.93 E-value=0.27 Score=43.53 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=61.6
Q ss_pred CCCeEEecCCCCEEEEEECCCCCeeccccCcc-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCc
Q 031361 70 DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTL 148 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~ 148 (161)
|+.-+.-.+.|-.+..+..++||. .-.|.-+ .+|..+-+..+...|+-.|.|+++-.-+.+|++-.-+|+..+.--.+
T Consensus 317 D~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~v 395 (508)
T KOG0275|consen 317 DNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPV 395 (508)
T ss_pred CcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccc
Confidence 444444555565777778899998 4455444 45666655555445778999999999999999999999987766666
Q ss_pred CCCCCceee
Q 031361 149 GSGLPMKKS 157 (161)
Q Consensus 149 ~~~~~~~~~ 157 (161)
++-.++.|+
T Consensus 396 nsv~~~PKn 404 (508)
T KOG0275|consen 396 NSVILLPKN 404 (508)
T ss_pred eeEEEcCCC
Confidence 665555553
No 124
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=90.82 E-value=4.3 Score=34.04 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=63.6
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEE--EecCCCeecceEeeC-----CCeEEecCCCCEEEEEECCCCCee----cc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWS--FSMGKPIYSSFTRND-----PDFYVDVGEDWKLYFHRKGIGKMK----KP 96 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~--f~t~~~i~ssp~~~d-----~~~~V~~~ddg~Lyald~~tG~~~----~w 96 (161)
+.++.+|--+.+|.||-+|..||..-.- =....++.......| +.+-|-+ ++|+=+.+++.+|... .+
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs-~~GqNlR~npdtGav~~~Dg~L 114 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVS-NTGQNLRLNPDTGAVTIVDGNL 114 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEc-cCCcEEEECCCCCCceeccCcc
Confidence 3678888888999999999999996554 222333433321111 1222222 3446666788877631 11
Q ss_pred ccCcccce-ecceeEeeCCeE----EEEee-CCEEEEEECCCCcEEEEe
Q 031361 97 SIDVGEFM-RRMPHVWDDGAL----LLGHE-KTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 97 ~~~~~~~V-~ssP~v~~dg~V----yvGs~-d~~lyalDa~TG~~~W~~ 139 (161)
.+..++.= -..|.+.. .- |-|.+ .++||.||..++.++-+-
T Consensus 115 ~y~~gd~~~G~~p~v~a--aAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ 161 (236)
T PF14339_consen 115 AYAAGDMNAGTTPGVTA--AAYTNSFAGATTSTTLYDIDTTLDALVTQN 161 (236)
T ss_pred ccCCCccccCCCCceEE--EEEecccCCCccceEEEEEecCCCeEEEec
Confidence 12111111 12566542 13 34556 789999999999988774
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=90.71 E-value=3.2 Score=38.10 Aligned_cols=126 Identities=12% Similarity=0.188 Sum_probs=85.8
Q ss_pred CCCCCCCCCCCCCCCEEEEEecCCeEEEEeCCCCceeEEEec--C--CCeecceEee-CCCeEEecCCCCEEEEEECCCC
Q 031361 17 SLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSM--G--KPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 17 ~~~~~~~~~s~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t--~--~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG 91 (161)
++|....+=.|--...+++++.--.+|..|..++++. +++. + .+......+. ++..++-.+..|.++.+.+.|+
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 3344433333433447899999999999999888764 2211 1 1122222222 4455555566779999999999
Q ss_pred CeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 92 KMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 92 ~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
.+ .-.+++.+-|...-+.++...+++-+.+|.+|..|...-+.+.+|.-++.
T Consensus 336 el-i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~ 387 (514)
T KOG2055|consen 336 EL-ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS 387 (514)
T ss_pred hh-hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc
Confidence 88 88888888777766666534567777899999999999999888876554
No 126
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.69 E-value=12 Score=33.37 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=64.2
Q ss_pred CCCCEEEEEecCC----eEEEEeCCCCcee-EEEecCCCeecceEee-CCC-eEEe-cCC--CCEEEEEECCCCCeeccc
Q 031361 28 ESGDLALVATLNG----TVHLVDTKRGESR-WSFSMGKPIYSSFTRN-DPD-FYVD-VGE--DWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 28 ~~~~~V~vgs~DG----~lyAvd~~tG~~~-W~f~t~~~i~ssp~~~-d~~-~~V~-~~d--dg~Lyald~~tG~~~~w~ 97 (161)
+..-++||....| .|+..|..-.+++ ++. ++ +..+|... |++ .+.+ ..+ ...+|.+|..+|+.+++.
T Consensus 153 f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt 229 (419)
T PRK04043 153 WMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA 229 (419)
T ss_pred ceeeEEEEEEccCCCcceEEEECCCCCceeEEcc--CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe
Confidence 4556777766444 7888888655444 443 34 33445543 554 2333 222 468999999999885554
Q ss_pred cCcccceecceeEeeCC-eEEEE-ee--CCEEEEEECCCCcEEE
Q 031361 98 IDVGEFMRRMPHVWDDG-ALLLG-HE--KTSVFFVDAKSGGMIC 137 (161)
Q Consensus 98 ~~~~~~V~ssP~v~~dg-~VyvG-s~--d~~lyalDa~TG~~~W 137 (161)
. . +-....|..+-|| .+.+. +. +..+|.+|.++|+...
T Consensus 230 ~-~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 230 S-S-QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ 271 (419)
T ss_pred c-C-CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence 3 2 2244567776555 35443 33 3689999999998554
No 127
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=90.60 E-value=3.5 Score=37.90 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=64.4
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEE-ecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSF-SMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f-~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
|-.+.++.-++.|++|.+.|..+|.++=+| +-..|+++-.-..++.....+.-||.+...+.++|++++-....+. |-
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~-If 497 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG-IF 497 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe-EE
Confidence 457788889999999999999999999999 6677888643333445555555577788777777777333222222 11
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEEC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDA 130 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa 130 (161)
.-=--.+++.|-+--+|+.+.++|.
T Consensus 498 el~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 498 ELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred EEEEcCCCCEEEEEecCCCceEEEe
Confidence 1000112233444446666666664
No 128
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=90.53 E-value=1.3 Score=37.92 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=42.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCe
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
.++.++++.-||.+|++|.++|+..-.|+--..-..+... +.+.-+.-+.+||.+...|.+|+|.
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce
Confidence 5677888889999999999999999999765442222221 1111222333566666667666655
No 129
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=90.51 E-value=11 Score=32.93 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=76.0
Q ss_pred CCCCEEEEEe-cCCeEEEEeCCCCceeEEEecCC---CeecceE---ee-CC-CeEEecCCC--CEEEEEECCCCCeecc
Q 031361 28 ESGDLALVAT-LNGTVHLVDTKRGESRWSFSMGK---PIYSSFT---RN-DP-DFYVDVGED--WKLYFHRKGIGKMKKP 96 (161)
Q Consensus 28 ~~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~---~~-d~-~~~V~~~dd--g~Lyald~~tG~~~~w 96 (161)
..+..+|+.+ .++.|+.+|. ++..+|+ .+.. ++...|. +. ++ ..|+-.... +.+..+|..++...++
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~-~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDT-SGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeC-CCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 4677788888 7889999995 6777776 4422 2222221 11 33 366665443 5899999999999777
Q ss_pred ccCcccc----eecceeEeeCCeEEEEeeC-CEEEEEECCCCcEEEEecCCCC
Q 031361 97 SIDVGEF----MRRMPHVWDDGALLLGHEK-TSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 97 ~~~~~~~----V~ssP~v~~dg~VyvGs~d-~~lyalDa~TG~~~W~~~~~~~ 144 (161)
....+.. +.-+|. ...+|+.... +.++.+|.++.++.-.+.....
T Consensus 247 ~~~~~~~~~~~v~~~p~---g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 247 DLPVGSGAPRGVAVDPA---GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred ccccccCCCCceeECCC---CCEEEEEecCCCeEEEEeCCCCceeeeeccccc
Confidence 5665553 333332 2557887555 8999999999999998877666
No 130
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.96 E-value=3.2 Score=36.33 Aligned_cols=105 Identities=17% Similarity=0.110 Sum_probs=65.7
Q ss_pred CCCCEEEEEecCCe----EEEEeCCCCceeEEEecCCCeecceEeeCCCeEEec----CCCCEEEEEECCCCCeeccccC
Q 031361 28 ESGDLALVATLNGT----VHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDV----GEDWKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 28 ~~~~~V~vgs~DG~----lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~----~ddg~Lyald~~tG~~~~w~~~ 99 (161)
.++|.+|++-.||+ ||.+|+++|+.+|-.+...+ .+. ...|. .+... ..-..+.|+|..+|+.+.-.|+
T Consensus 115 P~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~-KG~-~~~D~-a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~ 191 (339)
T PF09910_consen 115 PYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSL-KGT-LVHDY-ACFGINNFHKGVSGIHCLDLISGKWVIESFD 191 (339)
T ss_pred CCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCc-Cce-Eeeee-EEEeccccccCCceEEEEEccCCeEEEEecc
Confidence 37899999999997 59999999999996654332 222 11111 11111 1223699999999966444556
Q ss_pred cccceecceeEeeC--------CeEEEEeeCCEEEEEECCCCcEE
Q 031361 100 VGEFMRRMPHVWDD--------GALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 100 ~~~~V~ssP~v~~d--------g~VyvGs~d~~lyalDa~TG~~~ 136 (161)
....+...|.+... +++| .=-.|-++..|+-.|+..
T Consensus 192 ~~~s~Dg~~~~~~~~G~~~s~ynR~f-aF~rGGi~vgnP~~~e~~ 235 (339)
T PF09910_consen 192 VSLSVDGGPVIRPELGAMASAYNRLF-AFVRGGIFVGNPYNGEEF 235 (339)
T ss_pred cccCCCCCceEeeccccEEEEeeeEE-EEEeccEEEeCCCCCCce
Confidence 66667777775321 2222 223456777788877664
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=89.81 E-value=1.4 Score=40.08 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=22.8
Q ss_pred CCCCCCEEEEEecCCeEEEEeCCCCceeE
Q 031361 26 SPESGDLALVATLNGTVHLVDTKRGESRW 54 (161)
Q Consensus 26 s~~~~~~V~vgs~DG~lyAvd~~tG~~~W 54 (161)
+...+-.++.|+..|+||+-...||+++=
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~ 117 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLN 117 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHH
Confidence 34456667777799999999999999863
No 132
>PHA03098 kelch-like protein; Provisional
Probab=89.54 E-value=7.5 Score=34.98 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=56.3
Q ss_pred CCCEEEEEec---C----CeEEEEeCCCCceeEEEecCCC--eecc-eEeeCCCeEEecCCC--------CEEEEEECCC
Q 031361 29 SGDLALVATL---N----GTVHLVDTKRGESRWSFSMGKP--IYSS-FTRNDPDFYVDVGED--------WKLYFHRKGI 90 (161)
Q Consensus 29 ~~~~V~vgs~---D----G~lyAvd~~tG~~~W~f~t~~~--i~ss-p~~~d~~~~V~~~dd--------g~Lyald~~t 90 (161)
.++.+|+..- + ..++.+|..++ .|+....-| .... ..+.++.+||-++.+ ..++.+|+.+
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 5667776432 1 35788888765 487644322 2222 233466677755421 2388899887
Q ss_pred CCeeccccCc--cc-ceecceeEeeCCeEE-EEeeC-----CEEEEEECCCCcEEEE
Q 031361 91 GKMKKPSIDV--GE-FMRRMPHVWDDGALL-LGHEK-----TSVFFVDAKSGGMICS 138 (161)
Q Consensus 91 G~~~~w~~~~--~~-~V~ssP~v~~dg~Vy-vGs~d-----~~lyalDa~TG~~~W~ 138 (161)
+ .|..-. .. ....+-++.+ +.+| +|..+ ..+++.|+++.+ |+
T Consensus 466 ~---~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~ 516 (534)
T PHA03098 466 N---KWTELSSLNFPRINASLCIFN-NKIYVVGGDKYEYYINEIEVYDDKTNT--WT 516 (534)
T ss_pred C---ceeeCCCCCcccccceEEEEC-CEEEEEcCCcCCcccceeEEEeCCCCE--EE
Confidence 6 443211 11 1222333454 6676 56543 578999988875 54
No 133
>PHA02790 Kelch-like protein; Provisional
Probab=89.45 E-value=6.7 Score=35.33 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=52.4
Q ss_pred CCCCEEEE-EecCC---eEEEEeCCCCceeEEEecCC--Ceecc-eEeeCCCeEEecCCCCEEEEEECCCCCeeccccC-
Q 031361 28 ESGDLALV-ATLNG---TVHLVDTKRGESRWSFSMGK--PIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSID- 99 (161)
Q Consensus 28 ~~~~~V~v-gs~DG---~lyAvd~~tG~~~W~f~t~~--~i~ss-p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~- 99 (161)
+.+|.+|+ |..++ .+.++|+++. .|+....- |.... ..+.++.+||-++ ..-++|+.++ .|..-
T Consensus 360 ~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~---~W~~~~ 431 (480)
T PHA02790 360 SINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSN---TWTLID 431 (480)
T ss_pred EECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCC---cEeEcC
Confidence 35666665 33333 3556777654 69885432 22222 2234666776543 4455677765 55432
Q ss_pred -cccc-eecceeEeeCCeEEE-EeeC-----CEEEEEECCCCcE
Q 031361 100 -VGEF-MRRMPHVWDDGALLL-GHEK-----TSVFFVDAKSGGM 135 (161)
Q Consensus 100 -~~~~-V~ssP~v~~dg~Vyv-Gs~d-----~~lyalDa~TG~~ 135 (161)
+... ...+-++. ++.+|+ |..+ .++.+.|+++++.
T Consensus 432 ~m~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 432 DPIYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CCCCCccccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 2221 22223344 477884 6543 4677788887764
No 134
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=89.39 E-value=4.6 Score=35.29 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceecceeEeeCC--eEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 70 DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRMPHVWDDG--ALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ssP~v~~dg--~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
|+..++-|+.|-.++..|+++|+. -.+++.+. .|.+-+ ..+-| .|--||.|+++..-|.++-+.+..+
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~-~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKR-IRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred CCCEEEEecCCceEEEEeccccee-eehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 667888999999999999999999 56666664 455544 33223 3556999999999999966666555
No 135
>PHA03098 kelch-like protein; Provisional
Probab=89.38 E-value=7.6 Score=34.93 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=54.1
Q ss_pred CCCEEEE-EecC-----CeEEEEeCCCCceeEEEecCCC--eec-ceEeeCCCeEEecCC--C----CEEEEEECCCCCe
Q 031361 29 SGDLALV-ATLN-----GTVHLVDTKRGESRWSFSMGKP--IYS-SFTRNDPDFYVDVGE--D----WKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~v-gs~D-----G~lyAvd~~tG~~~W~f~t~~~--i~s-sp~~~d~~~~V~~~d--d----g~Lyald~~tG~~ 93 (161)
.++.+|+ |..+ ..++.+|..++ .|+.-..-| -.. +....++.+||.++. + ..++.+|+.++
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~-- 416 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGES--KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN-- 416 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC--
Confidence 4555554 4433 24677787665 487643322 222 122346777775541 1 35888898876
Q ss_pred eccccCc--ccceecceeEeeCCeEEE-EeeC--------CEEEEEECCCCcE
Q 031361 94 KKPSIDV--GEFMRRMPHVWDDGALLL-GHEK--------TSVFFVDAKSGGM 135 (161)
Q Consensus 94 ~~w~~~~--~~~V~ssP~v~~dg~Vyv-Gs~d--------~~lyalDa~TG~~ 135 (161)
.|..-. ........++..++.+|+ |..+ ..++..|+++++.
T Consensus 417 -~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 417 -KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred -eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 443321 112222233333477774 5432 2488889888753
No 136
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.24 E-value=5.5 Score=34.89 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=78.2
Q ss_pred CCCCCCEEEEEecCCeEEEEeCCC-CceeEE--EecCCCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCcc
Q 031361 26 SPESGDLALVATLNGTVHLVDTKR-GESRWS--FSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 26 s~~~~~~V~vgs~DG~lyAvd~~t-G~~~W~--f~t~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
||..+.++..||=||+|++-+... |...=+ ...++|+...-=..|+ .+|.++- |+.+-..|..+|+.+ .+.++
T Consensus 36 SP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~-Dk~~k~wDL~S~Q~~--~v~~H 112 (347)
T KOG0647|consen 36 SPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC-DKQAKLWDLASGQVS--QVAAH 112 (347)
T ss_pred ccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc-CCceEEEEccCCCee--eeeec
Confidence 355788888999999999866554 333221 1122333321111133 4666654 336666677777542 22332
Q ss_pred -cceecceeEeeCC--eEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCce
Q 031361 102 -EFMRRMPHVWDDG--ALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPMK 155 (161)
Q Consensus 102 -~~V~ssP~v~~dg--~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~ 155 (161)
.+|.+--.+...+ -+..||+|-+|.-=|.+.-+++-+.+..+-+-.++--+||-
T Consensus 113 d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~ 169 (347)
T KOG0647|consen 113 DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMA 169 (347)
T ss_pred ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCcee
Confidence 2344433343222 35789999999999999999999998888887777777763
No 137
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=89.06 E-value=9.7 Score=33.06 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=76.4
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
+-+++-++-|++|..-|.++=+.+=.|..........++. |+..-..++.||.++-.|...|+- .-.++..+.|.+--
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-lysl~a~~~v~sl~ 240 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-LYSLEAFDIVNSLC 240 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-eEeccCCCeEeeEE
Confidence 5677788999999999998888877775544444444443 667777777888888888887777 55666666555533
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+ ..+.-......++.+..-|.++++.+-.++.+..-+
T Consensus 241 f-spnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~ 277 (315)
T KOG0279|consen 241 F-SPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP 277 (315)
T ss_pred e-cCCceeEeeccCCceEEEeccchhhhhhcccccccc
Confidence 3 222223444556667777777777776666665554
No 138
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.02 E-value=2.7 Score=40.86 Aligned_cols=101 Identities=16% Similarity=0.302 Sum_probs=64.2
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCcee--EEEecCCCeecc-eE-----eeCCCeEEecCCCCEEEEEECCC-C-Ceeccc-
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESR--WSFSMGKPIYSS-FT-----RNDPDFYVDVGEDWKLYFHRKGI-G-KMKKPS- 97 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~--W~f~t~~~i~ss-p~-----~~d~~~~V~~~ddg~Lyald~~t-G-~~~~w~- 97 (161)
..+++.-- ....||-+|..+|+++ |+++-+.+|..- |. ..+..-|++-.+. .|+.+|++- | ++ .|.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n-~lfriDpR~~~~k~-v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDN-SLFRIDPRLSGNKL-VDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCC-ceEEeccCCCCCce-eecc
Confidence 34444432 4579999999999997 877766654421 11 1133567776544 899999864 3 33 331
Q ss_pred ---cCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCc
Q 031361 98 ---IDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 98 ---~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~ 134 (161)
+..+....+. +.+++|.|.|||.+|.+...| +.|+
T Consensus 571 ~k~Y~~~~~Fs~~-aTt~~G~iavgs~~G~IRLyd-~~g~ 608 (794)
T PF08553_consen 571 SKQYSSKNNFSCF-ATTEDGYIAVGSNKGDIRLYD-RLGK 608 (794)
T ss_pred ccccccCCCceEE-EecCCceEEEEeCCCcEEeec-ccch
Confidence 2222223322 345679999999999999999 5664
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=88.65 E-value=5.2 Score=37.32 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
..+..+..+.|++++.-+ .-++.|+..++.|....-.-.-+.+.++.. .|+...+|.++-.++-.+.. .+++...-
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~-~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ 454 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTA-TGRWFVLDTETQDLVTIHTD-NEQLSVVR 454 (626)
T ss_pred ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeec-cceEEEEecccceeEEEEec-CCceEEEE
Confidence 566788899999999999 789999999998877643333344455554 44888889888555333333 33333322
Q ss_pred eEeeCCe-EEEEeeCCEEEEEEC-CCCcEEEEe
Q 031361 109 HVWDDGA-LLLGHEKTSVFFVDA-KSGGMICSH 139 (161)
Q Consensus 109 ~v~~dg~-VyvGs~d~~lyalDa-~TG~~~W~~ 139 (161)
+ +.||. +-+||.|+.+|..-. ++|+..-+.
T Consensus 455 y-sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 455 Y-SPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred E-cCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 2 22354 458999997665442 556555444
No 140
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.53 E-value=14 Score=31.06 Aligned_cols=106 Identities=15% Similarity=0.055 Sum_probs=56.8
Q ss_pred CCCEEE-EEecC-----CeEEEEeCCCCce--eEEEecCCC--ee-cceEeeCCCeEEecCC-----CCEEEEEECCCCC
Q 031361 29 SGDLAL-VATLN-----GTVHLVDTKRGES--RWSFSMGKP--IY-SSFTRNDPDFYVDVGE-----DWKLYFHRKGIGK 92 (161)
Q Consensus 29 ~~~~V~-vgs~D-----G~lyAvd~~tG~~--~W~f~t~~~--i~-ssp~~~d~~~~V~~~d-----dg~Lyald~~tG~ 92 (161)
.++.+| +|..+ ..++++|..+.+. .|+....-| .. .+..+.++.+||.++. ...++++|+.+.
T Consensus 71 ~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~- 149 (323)
T TIGR03548 71 VENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ- 149 (323)
T ss_pred ECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC-
Confidence 355554 45443 3678888877764 455433222 22 2223347777775542 136899998765
Q ss_pred eeccccC--cccceecce-eEeeCCeEE-EEeeCC----EEEEEECCCCcEEEEe
Q 031361 93 MKKPSID--VGEFMRRMP-HVWDDGALL-LGHEKT----SVFFVDAKSGGMICSH 139 (161)
Q Consensus 93 ~~~w~~~--~~~~V~ssP-~v~~dg~Vy-vGs~d~----~lyalDa~TG~~~W~~ 139 (161)
.|..- +...-+..+ ++.-++.+| +|..++ .+++.|+++.+ |+.
T Consensus 150 --~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~--W~~ 200 (323)
T TIGR03548 150 --EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ--WQK 200 (323)
T ss_pred --CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe--eEE
Confidence 44332 221122222 223347787 465543 45788988875 543
No 141
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=88.34 E-value=6.4 Score=34.42 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=65.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee--CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+..++-.+.|-+|+..|.+||+.+-+++......++-... +.....-..||+.+..+|.++-.. .-.++-+..+.+
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~~kyqltA 179 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFENKYQLTA 179 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccccceeEEE
Confidence 67889999999999999999999999999988776554322 223444555777877777653222 111111111111
Q ss_pred ceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 107 MPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 107 sP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
-...++ .-|+.|.-|+.+-.=|++.++.....+
T Consensus 180 -v~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls 213 (338)
T KOG0265|consen 180 -VGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS 213 (338)
T ss_pred -EEecccccceeeccccCceeeeccccCcceEEee
Confidence 111111 236666666666666665555555444
No 142
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.02 E-value=2.8 Score=38.40 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=64.3
Q ss_pred EEEEecCCeEEEEeCCCCceeEEEec-CCCeecceE-eeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeE
Q 031361 33 ALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFT-RNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHV 110 (161)
Q Consensus 33 V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~-~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v 110 (161)
+-.|+..|.+.-+|.++-..+-++.. ..|++..-- ..|++.++-+.||...-..|+.++.+|.--..-.++|++--..
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence 33444455555555443223333332 234443221 2367788888888777777888777632223334577775555
Q ss_pred eeCC-eEEEEeeCCEEEEEECCCC-cEEEEecCCC
Q 031361 111 WDDG-ALLLGHEKTSVFFVDAKSG-GMICSHESDN 143 (161)
Q Consensus 111 ~~dg-~VyvGs~d~~lyalDa~TG-~~~W~~~~~~ 143 (161)
..++ .|+.||.||.+..-|.++= ..+-.++.+.
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~ 197 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC 197 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEecCCC
Confidence 4333 5778999999988887766 5555555443
No 143
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.79 E-value=3.9 Score=37.29 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=77.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc--ccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV--GEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~--~~~V~s 106 (161)
.+..|+.-+.|-.+..+++.+-..+=...+..||.+-....|+.+.+-...+..+...|.+.-++++-.+.- +.++-.
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence 566777777888888888776665555666667765433334444444444445555565555553332222 223333
Q ss_pred ceeE-eeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCc
Q 031361 107 MPHV-WDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPM 154 (161)
Q Consensus 107 sP~v-~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~ 154 (161)
|=+- .++..|--||+|+.+|.=+..+|+++-.......+.|.=+--|.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 3332 23355667999999999999999999988776655555444443
No 144
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=86.63 E-value=8.1 Score=27.70 Aligned_cols=84 Identities=13% Similarity=0.171 Sum_probs=47.2
Q ss_pred ecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeE
Q 031361 37 TLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGAL 116 (161)
Q Consensus 37 s~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~V 116 (161)
..||.+--.+..++.++|.=.+..|...+ ..+.-.++|+|+..+.. |.. .|.-.+.. ...+ .+
T Consensus 27 q~dgnlV~~~~~~~~~vW~snt~~~~~~~-------~~l~l~~dGnLvl~~~~-g~~-vW~S~t~~--~~~~------~~ 89 (114)
T smart00108 27 QNDYNLILYKSSSRTVVWVANRDNPVSDS-------CTLTLQSDGNLVLYDGD-GRV-VWSSNTTG--ANGN------YV 89 (114)
T ss_pred CCCEEEEEEECCCCcEEEECCCCCCCCCC-------EEEEEeCCCCEEEEeCC-CCE-EEEecccC--CCCc------eE
Confidence 35666655555447889987776654331 12222356688777654 666 55433321 0111 12
Q ss_pred EEEeeCCEEEEEECCCCcEEEE
Q 031361 117 LLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 117 yvGs~d~~lyalDa~TG~~~W~ 138 (161)
.+=-.||+|...|. .|+++|+
T Consensus 90 ~~L~ddGnlvl~~~-~~~~~W~ 110 (114)
T smart00108 90 LVLLDDGNLVIYDS-DGNFLWQ 110 (114)
T ss_pred EEEeCCCCEEEECC-CCCEEeC
Confidence 23345778887774 7889997
No 145
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=86.63 E-value=21 Score=31.25 Aligned_cols=112 Identities=12% Similarity=0.163 Sum_probs=67.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCC-C--CEEEEEECC--CCCee-ccccCcc-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGE-D--WKLYFHRKG--IGKMK-KPSIDVG- 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~d-d--g~Lyald~~--tG~~~-~w~~~~~- 101 (161)
....++-+|.||+|---|.-|.+..=-++....=+-+-++++..-+|.|+. | =.+|-+..+ .|..+ .-.+..+
T Consensus 66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc
Confidence 456677888888887777777766554544433222222333333444432 2 134544322 34331 1123333
Q ss_pred cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 102 EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.++.+--++. |+.++.||.|.+.-.=|.++|+++..|..
T Consensus 146 gylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 146 GYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred ceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecC
Confidence 2455555555 69999999999999999999999999974
No 146
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.62 E-value=2.9 Score=24.08 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=26.0
Q ss_pred CeEEEEe-eCCEEEEEECCCCcEEEEecCCCCC
Q 031361 114 GALLLGH-EKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 114 g~VyvGs-~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
+.+|+.. .++++..+|+++++++-+...+..+
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P 36 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP 36 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC
Confidence 5688866 4789999999999999998886544
No 147
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=86.21 E-value=6.1 Score=37.39 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=73.1
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecC-CCCEEEEEECCCCCeeccccCcccceeccee
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVG-EDWKLYFHRKGIGKMKKPSIDVGEFMRRMPH 109 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~-ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~ 109 (161)
|+.++| .--.||-+|...|+-+=-|++..+-.....++.-...+.|+ ++|.+-++|+++-.. .-.+.+..-|.+.|-
T Consensus 147 Dly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 147 DLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPG 224 (703)
T ss_pred cEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-heeeecccccCCCcc
Confidence 444444 46689999999999999999886544445565556666665 478888888876443 333333333333332
Q ss_pred ------E-----eeCCe-EEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 110 ------V-----WDDGA-LLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 110 ------v-----~~dg~-VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+ .+||. |=||+.+|.+|.-|.++-++.-.-+.
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh 268 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH 268 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc
Confidence 2 33353 55899999999999999887765443
No 148
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.02 E-value=13 Score=33.38 Aligned_cols=94 Identities=9% Similarity=0.068 Sum_probs=65.6
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
......+|.|++|...|..||+.+-++..-. =+.+......|.+++-|.||+.|...|.+++.- --...+.+.+..+-
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c-mk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC-MKTLEAHEHFVTSL 382 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee-eeccCCCcceeEEE
Confidence 4578899999999999999999999987533 355443344678888899999999999988876 44444665555444
Q ss_pred eEeeC-CeEEEEeeCCE
Q 031361 109 HVWDD-GALLLGHEKTS 124 (161)
Q Consensus 109 ~v~~d-g~VyvGs~d~~ 124 (161)
-+..+ ..|..||=|-+
T Consensus 383 Dfh~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 383 DFHKTAPYVVTGSVDQT 399 (406)
T ss_pred ecCCCCceEEeccccce
Confidence 33221 23555665544
No 149
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=86.00 E-value=3.4 Score=37.37 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=75.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-------------------------------------CC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-------------------------------------DP 71 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-------------------------------------d~ 71 (161)
-+|.+|-||.|++|.--++..|+..=.++--+.=..+.+.+ .+
T Consensus 257 G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 257 GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 48999999999999999999988876654322100000000 01
Q ss_pred CeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEE-EEeeCCEEEEEECCCCcEEEEecC
Q 031361 72 DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALL-LGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 72 ~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~Vy-vGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.-.|-+.||..||..++.--+.-.-+..-++.+...-.++-|++.+ -+|.|.++..=|.+||+.+-+|+.
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG 407 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG 407 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence 2367777888999887643332133444455555555666556433 488999999999999999888874
No 150
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=85.94 E-value=8.5 Score=36.93 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=55.6
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-ceecce
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE-FMRRMP 108 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~-~V~ssP 108 (161)
...+-.+-||.|.-.|. +|+.+-++.. .+=+|+-..+.++..+|-|++|+.+...+.. .. .-..+... -|.+.-
T Consensus 191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~-~q~I~lPttsiWsa~ 266 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--EC-VQVITLPTTSIWSAK 266 (745)
T ss_pred CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ce-EEEEecCccceEEEE
Confidence 36667778888888888 6666666543 3335543334466778888888766654432 11 11111111 233333
Q ss_pred eEeeCCeEEEEeeCCEEEEEE
Q 031361 109 HVWDDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalD 129 (161)
+.. +|.|++|+.||.+|..-
T Consensus 267 ~L~-NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 267 VLL-NGDIVVGGSDGRVRVFT 286 (745)
T ss_pred Eee-CCCEEEeccCceEEEEE
Confidence 333 57899999999888654
No 151
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=85.78 E-value=2.8 Score=36.57 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=40.4
Q ss_pred CCCCEEEEEecCCeEEEEeCC-CCceeEE---EecCC--CeecceEeeCC-CeEEecCCCCEEEEEECC
Q 031361 28 ESGDLALVATLNGTVHLVDTK-RGESRWS---FSMGK--PIYSSFTRNDP-DFYVDVGEDWKLYFHRKG 89 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~-tG~~~W~---f~t~~--~i~ssp~~~d~-~~~V~~~ddg~Lyald~~ 89 (161)
-..++||.|+.||.|.|-|.+ .++-+|+ ..+.+ .|+++|- ++ -++.+..|+ .+..+|.+
T Consensus 176 ~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~--~~~~I~TGsYDe-~i~~~DtR 241 (339)
T KOG0280|consen 176 KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP--KPTYIATGSYDE-CIRVLDTR 241 (339)
T ss_pred CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCC--CCceEEEecccc-ceeeeehh
Confidence 366999999999999999998 7888887 23444 2555542 12 234455555 77777765
No 152
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=85.69 E-value=19 Score=29.88 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=52.6
Q ss_pred CCCEEEEEec-CCeEEEEeCCC-C---ceeEEEecCCCeecceEeeCC-CeEEecCCCCEEEEEECCC-CCeecc-ccCc
Q 031361 29 SGDLALVATL-NGTVHLVDTKR-G---ESRWSFSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGI-GKMKKP-SIDV 100 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~t-G---~~~W~f~t~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~t-G~~~~w-~~~~ 100 (161)
.+..+|+++. +|.|..+|..+ | +.+-.+......+......++ .+|+-...++.++.+|..+ |++..- ....
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce
Confidence 4556777664 67777776642 3 222222211111211111133 3556666667888888765 433100 0011
Q ss_pred ccceecce---eEeeC-CeEEEEee-CCEEEEEECC--CCcEEE
Q 031361 101 GEFMRRMP---HVWDD-GALLLGHE-KTSVFFVDAK--SGGMIC 137 (161)
Q Consensus 101 ~~~V~ssP---~v~~d-g~VyvGs~-d~~lyalDa~--TG~~~W 137 (161)
.-...+.| .+..| ..+|+.+. ++++..+|.. +|++..
T Consensus 170 ~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 170 TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 11122334 23344 45788775 7777766654 666543
No 153
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.60 E-value=14 Score=35.63 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=79.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee--CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.++-+|+|-+++.-+..+-+=+=.|.-. ..+.+.++. |+++||-+.=|+.+...+...-++.-| .++++.|.+
T Consensus 379 Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITA 456 (712)
T KOG0283|consen 379 KNNFLLSSSMDKTVRLWHPGRKECLKVFSHN-DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITA 456 (712)
T ss_pred cCCeeEeccccccEEeecCCCcceeeEEecC-CeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhhee
Confidence 7899999999999998777776666666443 344455554 566777554465888777777777556 566776665
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.=+.=+..-.+||+.+|..+..+...=+++-++...
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 544433344889999999999998888877666543
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=85.56 E-value=8.9 Score=36.61 Aligned_cols=110 Identities=9% Similarity=0.024 Sum_probs=65.1
Q ss_pred CCE-EEEEecCCeEEEEeCCCCceeEE--EecCCC------eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 30 GDL-ALVATLNGTVHLVDTKRGESRWS--FSMGKP------IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 30 ~~~-V~vgs~DG~lyAvd~~tG~~~W~--f~t~~~------i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
.++ +..|+.||.|.+-|..+|..+=. .++++. |.=+...-.+..++-+..-|.+-..|+.+|.+ .-.+..
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTL-iqS~~~ 243 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTL-IQSHSC 243 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcch-hhhhhh
Confidence 344 88999999999999999998872 222221 11111111111222221234565566666666 444444
Q ss_pred ccceecceeEe-eCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 101 GEFMRRMPHVW-DDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 101 ~~~V~ssP~v~-~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
.+.=.-+=++. ++++|+.+.-|+.++-+-..+++-.|.-.
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~ 284 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN 284 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee
Confidence 43322222333 33789999999999999988887767644
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=85.15 E-value=5.5 Score=37.19 Aligned_cols=99 Identities=21% Similarity=0.189 Sum_probs=66.4
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee------CCCeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN------DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~------d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
+...-++-.++.||.|+..|-..-.++-++.- .++.|... +..++|-.+-|-++|.+|...-+ .+
T Consensus 174 ~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~---~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~------s~ 244 (673)
T KOG4378|consen 174 PSKRFLLSIASDKGAVTLWDVQGMSPIFHASE---AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA------ST 244 (673)
T ss_pred cccceeeEeeccCCeEEEEeccCCCcccchhh---hccCCcCcceecCCccceEEEecccceEEEeeccccc------cc
Confidence 44555667889999999999987777766643 22223221 33566666667789999875432 34
Q ss_pred ccceeccee----EeeCCeE-EEEeeCCEEEEEECCCCc
Q 031361 101 GEFMRRMPH----VWDDGAL-LLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 101 ~~~V~ssP~----v~~dg~V-yvGs~d~~lyalDa~TG~ 134 (161)
..++...|+ +.++|.. ..|+..|.+|+-|.+.=+
T Consensus 245 ~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 245 DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 556667776 3455654 579999999999976543
No 156
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=84.82 E-value=5.1 Score=35.90 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=71.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecce------Ee-eCCCeEEecCCCCEEEEEECC-CCCeeccccCc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSF------TR-NDPDFYVDVGEDWKLYFHRKG-IGKMKKPSIDV 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp------~~-~d~~~~V~~~ddg~Lyald~~-tG~~~~w~~~~ 100 (161)
.+..+.++..-|.+|-+|--+-.. |+ ..++.++. ++ .|+..++.+..|.++...... +-..-.|.+.
T Consensus 118 ~~~sv~v~dkagD~~~~di~s~~~-~~---~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG- 192 (390)
T KOG3914|consen 118 EDTSVLVADKAGDVYSFDILSADS-GR---CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG- 192 (390)
T ss_pred ccceEEEEeecCCceeeeeecccc-cC---cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc-
Confidence 677888888889888888755333 32 33333332 22 266788888878888877532 2222123332
Q ss_pred ccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 101 GEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 101 ~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
+....+++.+.++-.+.=||.|+++|+=|.++|+..-.++
T Consensus 193 H~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 193 HKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 3456778888776667889999999999999999995544
No 157
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=84.74 E-value=40 Score=33.81 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=60.0
Q ss_pred CCEEEEEe-cCCeEEEEeCCCCceeEEEecCC-------Ce-----ecce---Eee-CCC-eEEecCCCCEEEEEECCCC
Q 031361 30 GDLALVAT-LNGTVHLVDTKRGESRWSFSMGK-------PI-----YSSF---TRN-DPD-FYVDVGEDWKLYFHRKGIG 91 (161)
Q Consensus 30 ~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~-------~i-----~ssp---~~~-d~~-~~V~~~ddg~Lyald~~tG 91 (161)
++.+|++. .++.|+-+|..+|... .|..++ .. ...| .+. +++ +||-..+++.+..+|..+|
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 56666664 4567777887777543 222111 00 0111 111 333 5665555567777777766
Q ss_pred CeeccccC-----------cc-------cceeccee---EeeCCeEEEEe-eCCEEEEEECCCCcEEEEecCC
Q 031361 92 KMKKPSID-----------VG-------EFMRRMPH---VWDDGALLLGH-EKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 92 ~~~~w~~~-----------~~-------~~V~ssP~---v~~dg~VyvGs-~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.. .+... .+ +.....|. +..||.+||.. .++++..+|.++|++.....++
T Consensus 773 ~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 773 GS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred cE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 54 22110 00 00112344 44557788754 6779999999999887665543
No 158
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=84.51 E-value=5 Score=34.75 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=63.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc-----eEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS-----FTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss-----p~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~ 103 (161)
.++.++.|-.||.|.-.|+++|++.=.-. .++++ -...|.+.||-+..|..-..+|..+=.. .-.|.+..+
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~---~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v-~Kty~te~P 233 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGKELVDSD---EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV-LKTYTTERP 233 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCceeeech---hhhccccccccccCCcceEEecccCccceeeeccceee-EEEeeeccc
Confidence 78999999999999999999997754321 22322 1122668899888887888889888777 667888889
Q ss_pred eecceeEeeCCeEEEEeeC
Q 031361 104 MRRMPHVWDDGALLLGHEK 122 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~d 122 (161)
|+++-..--...|+.|..+
T Consensus 234 vN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ccceecccccceEEecCCc
Confidence 8886443112336665533
No 159
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.41 E-value=12 Score=34.67 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=75.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCC-CeEEecCCCCEEEEEECCCC-CeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIG-KMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG-~~~~w~~~~~~~V~ 105 (161)
.++.++.|+.||+|-.-|..+|+.+=+++--. .+++- ++ +. ...+-+.-|+.+-+.|..++ +. .-.+.....+.
T Consensus 340 ~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl-~~-~~~~~~~Sgs~D~~IkvWdl~~~~~c-~~tl~~h~~~v 416 (537)
T KOG0274|consen 340 DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSL-IV-DSENRLLSGSLDTTIKVWDLRTKRKC-IHTLQGHTSLV 416 (537)
T ss_pred cCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEE-Ee-cCcceEEeeeeccceEeecCCchhhh-hhhhcCCcccc
Confidence 68999999999999999999999988885422 23331 22 33 33332233457777787777 44 44444444454
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
..=... +..+.=++-|+++..=|+.+|+.+......
T Consensus 417 ~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 417 SSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred cccccc-cceeEeccccccEEEeecccCceeeeeccC
Confidence 333333 365666889999999999999999999886
No 160
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=84.35 E-value=11 Score=33.13 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=46.8
Q ss_pred ecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEEEee--------------------C
Q 031361 63 YSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHE--------------------K 122 (161)
Q Consensus 63 ~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~--------------------d 122 (161)
..+|.-.++.+++--...|.++++|+++|+. .--..+.++..+--.. + ...|||-. .
T Consensus 205 PhSPRWhdgrLwvldsgtGev~~vD~~~G~~-e~Va~vpG~~rGL~f~-G-~llvVgmSk~R~~~~f~glpl~~~l~~~~ 281 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGRGELGYVDPQAGKF-QPVAFLPGFTRGLAFA-G-DFAFVGLSKLRESRVFGGLPIEERLDALG 281 (335)
T ss_pred CcCCcEeCCeEEEEECCCCEEEEEcCCCCcE-EEEEECCCCCccccee-C-CEEEEEeccccCCCCcCCCchhhhhhhhc
Confidence 3455555666665544556888888877766 2223333333322222 2 44555532 2
Q ss_pred CEEEEEECCCCcEEEEecCCCCCC
Q 031361 123 TSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 123 ~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
.-+-+||.+||+++--.+.++...
T Consensus 282 CGv~vidl~tG~vv~~l~feg~v~ 305 (335)
T TIGR03032 282 CGVAVIDLNSGDVVHWLRFEGVIE 305 (335)
T ss_pred ccEEEEECCCCCEEEEEEeCCcee
Confidence 458899999999887766655433
No 161
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=82.71 E-value=25 Score=29.16 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=49.3
Q ss_pred EEEEE-ecCCeEEEEeCCC-Cc--eeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECC-CCCeeccccCcccce
Q 031361 32 LALVA-TLNGTVHLVDTKR-GE--SRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKG-IGKMKKPSIDVGEFM 104 (161)
Q Consensus 32 ~V~vg-s~DG~lyAvd~~t-G~--~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~-tG~~~~w~~~~~~~V 104 (161)
.+|++ ..|+.|+.+|..+ |+ .+=++++++.... ..+. |++ +|+.+..++.++.++.. +|++.... .. ..
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~-l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~-~~--~~ 78 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQP-MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA-ES--PL 78 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCcc-EEECCCCCEEEEEECCCCcEEEEEECCCCceEEee-ee--cC
Confidence 46777 5588899999864 54 3333444322111 1222 333 57766666677666654 56542111 11 12
Q ss_pred ecceeE---eeC-CeEEEEee-CCEEEEEECC
Q 031361 105 RRMPHV---WDD-GALLLGHE-KTSVFFVDAK 131 (161)
Q Consensus 105 ~ssP~v---~~d-g~VyvGs~-d~~lyalDa~ 131 (161)
...|.. ..| ..+|+.+. ++.+..+|..
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 224441 222 34776663 6677777664
No 162
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=82.59 E-value=19 Score=32.45 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=73.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEE-ecCCCCEEEEEECCCCCeeccccCcccceec-
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYV-DVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR- 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V-~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s- 106 (161)
.+.-...|+.|+++--.|..||+++=++.---.+.--..+.+..-|+ -|++|+.+-|.|...-+..|-.+.==..|.+
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 46677789999999999999999988874222222222333333344 5678889999998887773333221112222
Q ss_pred --ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 107 --MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 107 --sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
=|.+ .+++.|++|..+..-|.+|-..+-.+..
T Consensus 242 ~lhPTl---dvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 242 DLHPTL---DVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred eccccc---eeEEecCCcceEEEeeecccceEEEecC
Confidence 3332 5588999999999999999888877764
No 163
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.49 E-value=3.4 Score=38.72 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=65.1
Q ss_pred CEEEE-EecCCeEEEEeCCCCcee--EEEecCCCee-cce-----EeeCCCeEEecCCCCEEEEEECC-CCCe-ecc---
Q 031361 31 DLALV-ATLNGTVHLVDTKRGESR--WSFSMGKPIY-SSF-----TRNDPDFYVDVGEDWKLYFHRKG-IGKM-KKP--- 96 (161)
Q Consensus 31 ~~V~v-gs~DG~lyAvd~~tG~~~--W~f~t~~~i~-ssp-----~~~d~~~~V~~~ddg~Lyald~~-tG~~-~~w--- 96 (161)
+++|. +.....||-+|..+|+.+ |+|+-+=+++ -+| +..+..-+|+-.+ -.++.+|++ .|+- .-|
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~-n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSD-NSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecC-CceEEecccccCcceeeeeec
Confidence 44442 334468999999999998 8887662222 111 1111233666544 488889874 4441 122
Q ss_pred -ccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 97 -SIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 97 -~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
.|..+.-..+--+.. +|-|.+||.+|.+..-|. .|+...+
T Consensus 425 kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKT 465 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKT 465 (644)
T ss_pred cccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhh
Confidence 344555555555544 599999999999999996 7776543
No 164
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.98 E-value=5.3 Score=35.82 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=29.2
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCC-Ceec
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYS 64 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~s 64 (161)
.++..|+.||.|.--|..+-+.+|+|+... .|.+
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~G 114 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRG 114 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceee
Confidence 567889999999999999999999999866 4443
No 165
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=81.89 E-value=14 Score=26.54 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=45.6
Q ss_pred CCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEE
Q 031361 39 NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLL 118 (161)
Q Consensus 39 DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~Vyv 118 (161)
||.+--.+...+.++|.=.+..|.... ..+.-.++|+|+..|. +|.. .|.-.+.. ...++ +.+
T Consensus 30 dgnlv~~~~~~~~~vW~snt~~~~~~~-------~~l~l~~dGnLvl~~~-~g~~-vW~S~~~~--~~~~~------~~~ 92 (116)
T cd00028 30 DYNLILYKGSSRTVVWVANRDNPSGSS-------CTLTLQSDGNLVIYDG-SGTV-VWSSNTTR--VNGNY------VLV 92 (116)
T ss_pred eEEEEEEeCCCCeEEEECCCCCCCCCC-------EEEEEecCCCeEEEcC-CCcE-EEEecccC--CCCce------EEE
Confidence 665555544347889987776652211 1122235668877765 4566 56444332 11111 222
Q ss_pred EeeCCEEEEEECCCCcEEEEe
Q 031361 119 GHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 119 Gs~d~~lyalDa~TG~~~W~~ 139 (161)
=-.||+|...|. +|+.+|+-
T Consensus 93 L~ddGnlvl~~~-~~~~~W~S 112 (116)
T cd00028 93 LLDDGNLVLYDS-DGNFLWQS 112 (116)
T ss_pred EeCCCCEEEECC-CCCEEEcC
Confidence 335778887875 58999973
No 166
>PRK01029 tolB translocation protein TolB; Provisional
Probab=81.48 E-value=38 Score=30.06 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=54.9
Q ss_pred EEEEEecCC--eEEE--EeCCC---CceeEEEecCCCeecceEee-CCCeEEecCC-C--CEEEEEECC--CCCeecccc
Q 031361 32 LALVATLNG--TVHL--VDTKR---GESRWSFSMGKPIYSSFTRN-DPDFYVDVGE-D--WKLYFHRKG--IGKMKKPSI 98 (161)
Q Consensus 32 ~V~vgs~DG--~lyA--vd~~t---G~~~W~f~t~~~i~ssp~~~-d~~~~V~~~d-d--g~Lyald~~--tG~~~~w~~ 98 (161)
++|+.+.+| .+|. +|..+ |+++.-......+..+|... |+..+++..+ + .++|.++.. .+..++...
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 344444444 4555 35444 45554443333344455544 5554444332 2 368888764 233423332
Q ss_pred CcccceecceeEeeCCe-EEE-EeeC--CEEEEEECCCCcEEEEe
Q 031361 99 DVGEFMRRMPHVWDDGA-LLL-GHEK--TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 99 ~~~~~V~ssP~v~~dg~-Vyv-Gs~d--~~lyalDa~TG~~~W~~ 139 (161)
.- .-..+|..+-||. +++ ...+ ..+|.+|.++|+...-.
T Consensus 325 ~~--~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt 367 (428)
T PRK01029 325 KY--RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT 367 (428)
T ss_pred CC--CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc
Confidence 22 2235677765554 444 4333 47999999999886544
No 167
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=81.32 E-value=16 Score=35.17 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=64.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
....+..||.|-+++--|..+|..+--|.-.. ||.+ ..+. ++....-+.+||.+...|..+|++ ...+.-+.-...
T Consensus 546 Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~a-l~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 546 NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTA-LAFSPCGRYLASGDEDGLIKIWDLANGSL-VKQLKGHTGTIY 623 (707)
T ss_pred cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEE-EEEcCCCceEeecccCCcEEEEEcCCCcc-hhhhhcccCcee
Confidence 34566778999999999999999999994322 3333 2333 444444455688999999999988 333333322233
Q ss_pred ceeEeeCCeE-EEEeeCCEEEEEECC
Q 031361 107 MPHVWDDGAL-LLGHEKTSVFFVDAK 131 (161)
Q Consensus 107 sP~v~~dg~V-yvGs~d~~lyalDa~ 131 (161)
|=.++.||.| .+|+.|+++..=|..
T Consensus 624 SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 624 SLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEEEecCCCEEEecCCCCeEEEEEch
Confidence 3333334544 468888887766643
No 168
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=80.59 E-value=4.6 Score=35.63 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=38.6
Q ss_pred CCCEEEEEecCC----------eEEEEeCCCCceeEEEecCCCeecceEeeCCC--eEEecCCCCEEEEEECCCCCeec
Q 031361 29 SGDLALVATLNG----------TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD--FYVDVGEDWKLYFHRKGIGKMKK 95 (161)
Q Consensus 29 ~~~~V~vgs~DG----------~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~--~~V~~~ddg~Lyald~~tG~~~~ 95 (161)
..+.+|+--..| .|-.+|.+|++.+=+++.+.++.+-....|+. +|.-...++.|+.+|+.||++++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 456777654433 25666666666666666655554322222333 44344556799999999999844
No 169
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=80.38 E-value=29 Score=30.51 Aligned_cols=101 Identities=10% Similarity=0.104 Sum_probs=65.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCCC--eEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPD--FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~~--~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
.+.+|+.|+.|+.+.-.|..+|++. ++.+ ++|+....-+.... ..+-++-|-.|-..|.+.-.+ .-..++.+.+.
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~-~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~LPeRvY 160 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVS-QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQLPERVY 160 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCee-eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-eeeeeccceee
Confidence 6789999999999999999999654 4433 44555433232222 334444455666667666655 55666666666
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSG 133 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG 133 (161)
+.=+.. ....|+..+-++.+.+.+++
T Consensus 161 a~Dv~~--pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 161 AADVLY--PMAVVATAERHIAVYNLENP 186 (347)
T ss_pred ehhccC--ceeEEEecCCcEEEEEcCCC
Confidence 665554 44667777777777777655
No 170
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=80.09 E-value=36 Score=28.97 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs-~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+|.+|.=| .+|..+..|+.|-+++=+|+..+.-.+ ...|++.++-+....+||.+|+++-++ .-+.++. ....
T Consensus 98 ~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWG--Lt~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~--~~g~ 172 (264)
T PF05096_consen 98 LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWG--LTSDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVT--DNGR 172 (264)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--E--EEECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-E--ETTE
T ss_pred ECCEEEEEEecCCeEEEEccccceEEEEEecCCcceE--EEcCCCEEEEECCccceEEECCcccce-EEEEEEE--ECCE
Confidence 455666444 678889999999888877766543222 224555444443345899999998877 4455554 3445
Q ss_pred eeE------eeCCeEEEEee-CCEEEEEECCCCcEEEEecCCC
Q 031361 108 PHV------WDDGALLLGHE-KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 108 P~v------~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~~ 143 (161)
|+- .-||.||.==+ ...+..||++||+++-.++...
T Consensus 173 pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 173 PVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp E---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred ECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhH
Confidence 552 12477775443 4588899999999998876543
No 171
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=79.96 E-value=2.4 Score=26.58 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEE
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWS 55 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~ 55 (161)
..-|++-+|+.||.|+.... +|+.+|+
T Consensus 21 P~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 21 PTMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred CCCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 36789999999999999888 8999995
No 172
>PLN02193 nitrile-specifier protein
Probab=79.94 E-value=37 Score=30.49 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=56.0
Q ss_pred CCCEEEE-EecC-----CeEEEEeCCCCceeEEEecCC-----Ceecc-eEeeCCCeEEecCCC-----CEEEEEECCCC
Q 031361 29 SGDLALV-ATLN-----GTVHLVDTKRGESRWSFSMGK-----PIYSS-FTRNDPDFYVDVGED-----WKLYFHRKGIG 91 (161)
Q Consensus 29 ~~~~V~v-gs~D-----G~lyAvd~~tG~~~W~f~t~~-----~i~ss-p~~~d~~~~V~~~dd-----g~Lyald~~tG 91 (161)
.++.+|+ |..+ ..+|++|..+. .|+.-... |-..+ .++.++.+||.++.+ ..++++|+.+.
T Consensus 227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 227 IGSTLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred ECCEEEEECCCCCCCCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 4556664 4433 35899999865 58864321 12221 223466777765532 34788888765
Q ss_pred Ceecccc-Cccc----ceecce-eEeeCCeEE-EEeeC----CEEEEEECCCCcEEEEe
Q 031361 92 KMKKPSI-DVGE----FMRRMP-HVWDDGALL-LGHEK----TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 92 ~~~~w~~-~~~~----~V~ssP-~v~~dg~Vy-vGs~d----~~lyalDa~TG~~~W~~ 139 (161)
.|.. .... .-.... ++.+ +.+| +|..+ ..+++.|+++.+ |+.
T Consensus 305 ---~W~~~~~~~~~~~~R~~~~~~~~~-gkiyviGG~~g~~~~dv~~yD~~t~~--W~~ 357 (470)
T PLN02193 305 ---KWFHCSTPGDSFSIRGGAGLEVVQ-GKVWVVYGFNGCEVDDVHYYDPVQDK--WTQ 357 (470)
T ss_pred ---EEEeCCCCCCCCCCCCCcEEEEEC-CcEEEEECCCCCccCceEEEECCCCE--EEE
Confidence 4432 2111 001112 2344 6676 46544 579999999876 553
No 173
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=79.51 E-value=11 Score=33.99 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=32.7
Q ss_pred CeeccccCcccceeccee--------EeeCCeEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 92 KMKKPSIDVGEFMRRMPH--------VWDDGALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 92 ~~~~w~~~~~~~V~ssP~--------v~~dg~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
.++.|..++.++|+.--. -+.+..|.-||.|.++..-|++.|+.+...
T Consensus 341 TikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred eEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHH
Confidence 444666666666654222 244456777999999999999999765443
No 174
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.43 E-value=22 Score=30.48 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=44.5
Q ss_pred CCCEEEEEecCCeEEEEe--CCCCce-----eEEEec----CCCeecceEe-eCCCeEEecCCCCEEEEEECCCCCeecc
Q 031361 29 SGDLALVATLNGTVHLVD--TKRGES-----RWSFSM----GKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd--~~tG~~-----~W~f~t----~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~tG~~~~w 96 (161)
+.-+.|+-|.+-.|-|.| ..||.. +...+- ++++.---.+ .++.+||.+.++|.++.+|+.|||+ ..
T Consensus 169 ~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~-L~ 247 (310)
T KOG4499|consen 169 AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI-LL 247 (310)
T ss_pred CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE-EE
Confidence 445566777777885555 666643 333332 1122211112 1457899999999999999999999 55
Q ss_pred ccCcc
Q 031361 97 SIDVG 101 (161)
Q Consensus 97 ~~~~~ 101 (161)
.+++.
T Consensus 248 eiklP 252 (310)
T KOG4499|consen 248 EIKLP 252 (310)
T ss_pred EEEcC
Confidence 55544
No 175
>PLN02193 nitrile-specifier protein
Probab=79.38 E-value=32 Score=30.90 Aligned_cols=101 Identities=10% Similarity=0.035 Sum_probs=52.9
Q ss_pred CCCEEE-EEecCC-----eEEEEeCCCCceeEEEecC-C--C-ee--cceEeeCCCeEEecCCC----CEEEEEECCCCC
Q 031361 29 SGDLAL-VATLNG-----TVHLVDTKRGESRWSFSMG-K--P-IY--SSFTRNDPDFYVDVGED----WKLYFHRKGIGK 92 (161)
Q Consensus 29 ~~~~V~-vgs~DG-----~lyAvd~~tG~~~W~f~t~-~--~-i~--ssp~~~d~~~~V~~~dd----g~Lyald~~tG~ 92 (161)
.++.+| +|..++ .++++|..+. .|+.-.. + + .. .+..+.++.+||-.+.+ ..++++|+.+.
T Consensus 277 ~~~~iYv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~- 353 (470)
T PLN02193 277 DEENVYVFGGVSATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD- 353 (470)
T ss_pred ECCEEEEECCCCCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCC-
Confidence 455555 444433 4788888764 5875332 1 1 11 11223366677643322 36899999876
Q ss_pred eeccccC-c----ccc-eecceeEeeCCeEE-EEeeC--------------CEEEEEECCCCcE
Q 031361 93 MKKPSID-V----GEF-MRRMPHVWDDGALL-LGHEK--------------TSVFFVDAKSGGM 135 (161)
Q Consensus 93 ~~~w~~~-~----~~~-V~ssP~v~~dg~Vy-vGs~d--------------~~lyalDa~TG~~ 135 (161)
.|..- . ... ...+-++.+ +.+| +|... ..+|++|..|.+.
T Consensus 354 --~W~~~~~~g~~P~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 354 --KWTQVETFGVRPSERSVFASAAVG-KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred --EEEEeccCCCCCCCcceeEEEEEC-CEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 34321 1 111 112223444 5565 56643 2589999988763
No 176
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=79.33 E-value=23 Score=32.18 Aligned_cols=105 Identities=18% Similarity=0.138 Sum_probs=62.4
Q ss_pred CCCCEEEEEecCC------eEEEEeCCCCceeEEEe--cCC-C--eecce-EeeCCCeEEecCC------CCEEEEEECC
Q 031361 28 ESGDLALVATLNG------TVHLVDTKRGESRWSFS--MGK-P--IYSSF-TRNDPDFYVDVGE------DWKLYFHRKG 89 (161)
Q Consensus 28 ~~~~~V~vgs~DG------~lyAvd~~tG~~~W~f~--t~~-~--i~ssp-~~~d~~~~V~~~d------dg~Lyald~~ 89 (161)
+.+.++++|..+. .||.+|..|++ |++. ++. | ..++. ++.++.+||.++. ...+|++|..
T Consensus 121 ~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~ 198 (482)
T KOG0379|consen 121 VGDKLYLFGGTDKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE 198 (482)
T ss_pred ECCeEEEEccccCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccc
Confidence 3567778888886 89999998886 6654 333 2 22333 3345567775542 2358999987
Q ss_pred CCCeeccccCcccc--e-eccee--EeeCCeEEEEeeC------CEEEEEECCCCcEEEE
Q 031361 90 IGKMKKPSIDVGEF--M-RRMPH--VWDDGALLLGHEK------TSVFFVDAKSGGMICS 138 (161)
Q Consensus 90 tG~~~~w~~~~~~~--V-~ssP~--v~~dg~VyvGs~d------~~lyalDa~TG~~~W~ 138 (161)
+=+ |-++.+... . +..+. +.++..+.||..+ +.+|++|..| ..|+
T Consensus 199 ~~~--W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~--~~W~ 254 (482)
T KOG0379|consen 199 TST--WSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLST--WEWK 254 (482)
T ss_pred ccc--ceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeeccc--ceee
Confidence 654 334444321 1 11222 3444545566655 4799999999 5555
No 177
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.99 E-value=11 Score=34.31 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=54.5
Q ss_pred CCCCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCC-CCEEEEEECCCC
Q 031361 25 ASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGE-DWKLYFHRKGIG 91 (161)
Q Consensus 25 ~s~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~d-dg~Lyald~~tG 91 (161)
=||..+|++.+++.+-+|--+|.+|-...=+|...+++.+.--=-|+-.|||+++ .|.+|.+|.+.-
T Consensus 201 fSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 201 FSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred cCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 3567889999999999999999999999999988888887643335567888875 679999998644
No 178
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=78.20 E-value=19 Score=33.29 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=53.9
Q ss_pred CCeEEecCCCCEEEEEECCCCCeecccc-CcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 71 PDFYVDVGEDWKLYFHRKGIGKMKKPSI-DVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 71 ~~~~V~~~ddg~Lyald~~tG~~~~w~~-~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
+...+-+.-|+.+-++|+..|.. .-.| +=.++|.+--+.-+...+--|+.|+.+...+.++|++...+..++.
T Consensus 422 ~~~l~sas~dstV~lwdv~~gv~-i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESGVP-IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred CceEEEeecCCeEEEEEccCCce-eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe
Confidence 45677777788999999999988 5555 3344555443333213355799999999999999999999987765
No 179
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.80 E-value=17 Score=35.08 Aligned_cols=114 Identities=10% Similarity=0.095 Sum_probs=73.0
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCC-eEEecCCCCEEEEEECCCCCeeccccCcc---
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVG--- 101 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~--- 101 (161)
|+.+...+-|+.||+++--+...-++.==++... +..+..+ .||. .+||+.+| ..+.++...-++ ...+.+.
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~PdGk~avIGt~~G-~C~fY~t~~lk~-~~~~~I~~~~ 495 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYSPDGKGAVIGTFNG-YCRFYDTEGLKL-VSDFHIRLHN 495 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEeccCCceEEEEEecc-EEEEEEccCCeE-EEeeeEeecc
Confidence 7899999999999999987777666653344443 3332332 3554 45666544 777777654433 2222111
Q ss_pred ------cc---eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCC
Q 031361 102 ------EF---MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 102 ------~~---V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
.. ++..|--. ..|.|-|.|..+..+|..+=+++-+|+.-...
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~--~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDP--DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT 546 (712)
T ss_pred CccccCceeeeeEecCCCC--CeEEEecCCCceEEEeccchhhhhhhcccccC
Confidence 11 23333322 25999999999999999888999988865443
No 180
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=77.39 E-value=4.1 Score=37.56 Aligned_cols=113 Identities=15% Similarity=0.218 Sum_probs=80.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecc-eEee--------CCCeEEecCCCCEEEEEECCCCCeeccccC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS-FTRN--------DPDFYVDVGEDWKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ss-p~~~--------d~~~~V~~~ddg~Lyald~~tG~~~~w~~~ 99 (161)
.+-.+++|..-|+|-|+|-.|+++.-.+.....++.- ..-+ .+-+|||..+|-.|+|+-...+.. ++.|
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~-rLeF- 217 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVA-RLEF- 217 (545)
T ss_pred CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchh-hhcc-
Confidence 5667889999999999999999999999887765521 1111 335789998888999996554433 3322
Q ss_pred cccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCC
Q 031361 100 VGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLP 153 (161)
Q Consensus 100 ~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~ 153 (161)
-|+.. .+.-++..|.+.=+|..+|+++-++.+..-...+-..-|
T Consensus 218 -------LPyHf---LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 218 -------LPYHF---LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -------cchhh---eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 34432 245577889999999999999999887655444433333
No 181
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=77.37 E-value=10 Score=31.03 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=36.8
Q ss_pred CeEEEEeCCCCceeEEEecCCCe-ecceEe----eCCC--eEEec-----CCCCEEEEEECCCCCe
Q 031361 40 GTVHLVDTKRGESRWSFSMGKPI-YSSFTR----NDPD--FYVDV-----GEDWKLYFHRKGIGKM 93 (161)
Q Consensus 40 G~lyAvd~~tG~~~W~f~t~~~i-~ssp~~----~d~~--~~V~~-----~ddg~Lyald~~tG~~ 93 (161)
|.||-.|..+++. |++..+.-- ..+|-. .|.. ++|+. .+||+||.++..||.+
T Consensus 88 GkIYIkn~~~~~~-~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~ 152 (200)
T PF15525_consen 88 GKIYIKNLNNNNW-WSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNL 152 (200)
T ss_pred eeEEEEecCCCce-EEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCce
Confidence 7899999988888 999776531 334432 1332 23332 3789999999999987
No 182
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.02 E-value=40 Score=32.51 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=73.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe-cCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc-cceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~-t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~s 106 (161)
.+--++.+=-+|+|+--|..|-..+=+|+ ++-|+.+.--++-.+++|-+.||.++..++-.|+.. .-.|+++ ++|++
T Consensus 24 tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-V~~FeAH~DyIR~ 102 (794)
T KOG0276|consen 24 TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-VKTFEAHSDYIRS 102 (794)
T ss_pred CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee-eEEeeccccceee
Confidence 34567777789999988888888888887 456888877677778999888999999999999988 5667666 56665
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~T 132 (161)
--+.-.+.-|..+|.|-.+-.-|-+.
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccC
Confidence 43332234455555555555444433
No 183
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.99 E-value=50 Score=29.09 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=66.7
Q ss_pred EecCCeEEEEeCCCCceeEEEecC-------CCeecceEeeCCCeEEecC-----------C----------CCEEEEEE
Q 031361 36 ATLNGTVHLVDTKRGESRWSFSMG-------KPIYSSFTRNDPDFYVDVG-----------E----------DWKLYFHR 87 (161)
Q Consensus 36 gs~DG~lyAvd~~tG~~~W~f~t~-------~~i~ssp~~~d~~~~V~~~-----------d----------dg~Lyald 87 (161)
-..++.-|-+|...++.+..|+.= +.-+......|+-+|+++- + =++++.+|
T Consensus 5 lAfeaeahfi~~~d~~~iY~felvG~~P~SGGDTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd 84 (339)
T PF09910_consen 5 LAFEAEAHFIDRDDSEKIYRFELVGPPPTSGGDTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYD 84 (339)
T ss_pred EEeeeeeEEEecCCceEEEEeeeccCCCCCCCccceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEE
Confidence 345677788889999999999752 2233333333443443321 1 14688888
Q ss_pred CCCCCe-eccccCcccc----eecceeEee--CCeEEEEeeCCE----EEEEECCCCcEEEEecC
Q 031361 88 KGIGKM-KKPSIDVGEF----MRRMPHVWD--DGALLLGHEKTS----VFFVDAKSGGMICSHES 141 (161)
Q Consensus 88 ~~tG~~-~~w~~~~~~~----V~ssP~v~~--dg~VyvGs~d~~----lyalDa~TG~~~W~~~~ 141 (161)
..++++ ..|+-+++.. =+-|-++++ +..+++...||+ +|.||.++|+..|--+.
T Consensus 85 ~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ 149 (339)
T PF09910_consen 85 TENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSN 149 (339)
T ss_pred cCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCC
Confidence 888754 1566666542 112333332 256999999984 89999999999886543
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=76.98 E-value=7.9 Score=35.11 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=45.9
Q ss_pred CCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 78 GEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 78 ~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
+-|-.+...|..||+. ....+-.+.|.+.-.-.+.+.+...++|-.+..+|+++|++++.-
T Consensus 151 g~Dn~v~iWnv~tgea-li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEA-LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred cCCceEEEEeccCCce-eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 3444677778888887 555666666777777676344556789999999999999999976
No 185
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.64 E-value=58 Score=29.42 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=77.6
Q ss_pred CCCCCCCC----CCCCEEEEEecCCeEEEEeC-----------------------CCCceeEEEecCCCeecceEee--C
Q 031361 20 PTSPRASP----ESGDLALVATLNGTVHLVDT-----------------------KRGESRWSFSMGKPIYSSFTRN--D 70 (161)
Q Consensus 20 ~~~~~~s~----~~~~~V~vgs~DG~lyAvd~-----------------------~tG~~~W~f~t~~~i~ssp~~~--d 70 (161)
+..-.|.| ..-|..++.+.+..|.|+.- +.=.+.|+|..|+++..--.+. .
T Consensus 172 p~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 172 PDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred CCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 33445777 35788888888888876642 2334679999999866433322 1
Q ss_pred C--CeEEecCCCCEEEEEECCCCCeeccccCcccc-eecceeEe---eCC----eEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 71 P--DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF-MRRMPHVW---DDG----ALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 71 ~--~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~-V~ssP~v~---~dg----~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
+ +++|=+ ..+||+++. +|.+ ++.-++... .-..|+.. .++ .+.|++.+++|.... +.+++|.-+
T Consensus 252 ~~~~IvvLg--er~Lf~l~~-~G~l-~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~ 325 (418)
T PF14727_consen 252 SESDIVVLG--ERSLFCLKD-NGSL-RFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQ 325 (418)
T ss_pred CCceEEEEe--cceEEEEcC-CCeE-EEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecC
Confidence 2 334333 238999986 6888 776666432 22234432 112 388999999998885 789999988
Q ss_pred CCCCCC
Q 031361 141 SDNSAS 146 (161)
Q Consensus 141 ~~~~~~ 146 (161)
....+.
T Consensus 326 l~~~PV 331 (418)
T PF14727_consen 326 LPHVPV 331 (418)
T ss_pred CCCCCE
Confidence 755443
No 186
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.40 E-value=12 Score=21.37 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=25.9
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecCC
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMGK 60 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~~ 60 (161)
.++.+|+++. ++.|..+|..+++.+=+++.+.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 3567888775 7899999999999888887753
No 187
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=76.29 E-value=59 Score=29.27 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=74.3
Q ss_pred CCCCCEEEEEecC---CeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecC--C-CCEEEEEECCCCCeeccccC
Q 031361 27 PESGDLALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVG--E-DWKLYFHRKGIGKMKKPSID 99 (161)
Q Consensus 27 ~~~~~~V~vgs~D---G~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~--d-dg~Lyald~~tG~~~~w~~~ 99 (161)
+......|+.=.. ..+|.+|..+|+..=.....+. ...|+. .|+.-++.+. + .-.+|-.|..++.+ ++.+
T Consensus 202 ~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~-~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~~Lt 278 (425)
T COG0823 202 PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN-NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--PRLT 278 (425)
T ss_pred cCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc-cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--eecc
Confidence 3445555553333 3488888888876554443222 222332 2554444433 2 23588888877664 4456
Q ss_pred cccceecceeEeeCCe-EEEEe-eCC--EEEEEECCCCcEEEEecCCCCCCCcCCCCCceeeeec
Q 031361 100 VGEFMRRMPHVWDDGA-LLLGH-EKT--SVFFVDAKSGGMICSHESDNSASTLGSGLPMKKSFVF 160 (161)
Q Consensus 100 ~~~~V~ssP~v~~dg~-VyvGs-~d~--~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 160 (161)
-..-+.+.|...-||. +++.| +.| .+|..|+..+.....-.....++ .-.-+|=.+.++|
T Consensus 279 ~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~ 342 (425)
T COG0823 279 NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVF 342 (425)
T ss_pred cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEE
Confidence 6666888999876664 44444 333 79999988887755544444444 3344444444444
No 188
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=76.04 E-value=51 Score=28.47 Aligned_cols=108 Identities=9% Similarity=0.049 Sum_probs=64.1
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCC-eEEecCCCCEEEEEECCCCCee-ccccCcc-cceecc
Q 031361 32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMK-KPSIDVG-EFMRRM 107 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lyald~~tG~~~-~w~~~~~-~~V~ss 107 (161)
++..++.|.+|+--.+.||+=.-+++-...-+..-.+. |+. +-..+.. ++..+|..+++.. .-.|+.. .-|.+-
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q--hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ--HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC--eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 34457789999999999999999887655333222222 322 2223322 4444466666551 2233333 345555
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
-+-.+..-+|.||+||++..-|.+.=.....|+.
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~ 123 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH 123 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhccC
Confidence 5656533489999999988888777444444443
No 189
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.49 E-value=36 Score=29.45 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCCEEEEEec-------CCeEEEEeCCCCc---eeEEEecCCCeecc-eEeeCCCeEEecCCCCEEEEEEC
Q 031361 20 PTSPRASPESGDLALVATL-------NGTVHLVDTKRGE---SRWSFSMGKPIYSS-FTRNDPDFYVDVGEDWKLYFHRK 88 (161)
Q Consensus 20 ~~~~~~s~~~~~~V~vgs~-------DG~lyAvd~~tG~---~~W~f~t~~~i~ss-p~~~d~~~~V~~~ddg~Lyald~ 88 (161)
.-+.+=||..++.+-+++. .|+||-+|...++ +.=+|++...+..- -.-+.++..+-|..||.|..+|.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 3356778888888877764 6899999885332 23445555544321 00011234444555668877772
Q ss_pred --CCCCeeccccCcccceec---ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 89 --GIGKMKKPSIDVGEFMRR---MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 89 --~tG~~~~w~~~~~~~V~s---sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
..+-++.|+-...| |.+ .+. .. ..+..+|+|+++-.=|+.-++-+.+|...+.|.
T Consensus 91 ~~~s~Pi~~~kEH~~E-V~Svdwn~~-~r-~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKRE-VYSVDWNTV-RR-RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred CCCCcchhHHHhhhhh-eEEeccccc-cc-eeEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 23334344444333 333 333 22 336689999999999999999999988766553
No 190
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.27 E-value=48 Score=27.74 Aligned_cols=96 Identities=10% Similarity=0.100 Sum_probs=52.1
Q ss_pred eEEEEeCCCCceeEEEecCC--Ce-ecceEeeCCCeEEecCCC-----CEEEEEECCCCCe-eccccC--ccccee-cce
Q 031361 41 TVHLVDTKRGESRWSFSMGK--PI-YSSFTRNDPDFYVDVGED-----WKLYFHRKGIGKM-KKPSID--VGEFMR-RMP 108 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~t~~--~i-~ssp~~~d~~~~V~~~dd-----g~Lyald~~tG~~-~~w~~~--~~~~V~-ssP 108 (161)
.+|.++..+.+..|+-...- +. +.+.++.++.+|+-++.+ ..++.+|..+.+- .+|... +..... .+-
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~ 119 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSA 119 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceE
Confidence 57888754556679775432 22 222334466777654422 3688888776542 123321 122222 222
Q ss_pred eEeeCCeEEE-Eee-----CCEEEEEECCCCcEEEEe
Q 031361 109 HVWDDGALLL-GHE-----KTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 109 ~v~~dg~Vyv-Gs~-----d~~lyalDa~TG~~~W~~ 139 (161)
++.+ +.||+ |.. ...+++.|+++.+ |+.
T Consensus 120 ~~~~-~~iYv~GG~~~~~~~~~v~~yd~~~~~--W~~ 153 (323)
T TIGR03548 120 CYKD-GTLYVGGGNRNGKPSNKSYLFNLETQE--WFE 153 (323)
T ss_pred EEEC-CEEEEEeCcCCCccCceEEEEcCCCCC--eeE
Confidence 3444 77875 543 3479999998775 654
No 191
>PHA02790 Kelch-like protein; Provisional
Probab=75.19 E-value=63 Score=29.10 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=52.5
Q ss_pred CCCEEEE-EecCC-----eEEEEeCCCCceeEEEecCCC--e-ecceEeeCCCeEEecCC--CCEEEEEECCCCCeeccc
Q 031361 29 SGDLALV-ATLNG-----TVHLVDTKRGESRWSFSMGKP--I-YSSFTRNDPDFYVDVGE--DWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 29 ~~~~V~v-gs~DG-----~lyAvd~~tG~~~W~f~t~~~--i-~ssp~~~d~~~~V~~~d--dg~Lyald~~tG~~~~w~ 97 (161)
.++.+|+ |..++ .+.++|..+++ |..-..-+ - ..+..+.++.+|+-++. ...+..+|+.++ .|.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~--W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n---~W~ 344 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNN--WIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA---AWV 344 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCE--EEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCC---eEE
Confidence 4555544 43332 46677777654 76543221 1 12222346667654432 134666777654 343
Q ss_pred c--CcccceecceeEeeCCeEEE-EeeCC---EEEEEECCCCcEEEEec
Q 031361 98 I--DVGEFMRRMPHVWDDGALLL-GHEKT---SVFFVDAKSGGMICSHE 140 (161)
Q Consensus 98 ~--~~~~~V~ssP~v~~dg~Vyv-Gs~d~---~lyalDa~TG~~~W~~~ 140 (161)
. .+........++.-+|.||+ |..++ ++...|+++. .|+..
T Consensus 345 ~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~ 391 (480)
T PHA02790 345 NMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFG 391 (480)
T ss_pred ECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeC
Confidence 3 22333322222333488885 66543 4667788776 46653
No 192
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.60 E-value=46 Score=32.08 Aligned_cols=112 Identities=11% Similarity=0.061 Sum_probs=67.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC----eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP----IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~----i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
-.+-+++||.|+.|+-.+..|++.+=+|+.-.. |..+|+- ..++-++||-.+-..|=+.+..+.-.|+-+
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~---P~vLtsSDDm~iKlW~we~~wa~~qtfeGH--- 139 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL---PYVLTSSDDMTIKLWDWENEWACEQTFEGH--- 139 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCC---CeEEecCCccEEEEeeccCceeeeeEEcCc---
Confidence 578899999999999999999999999988654 3344432 355566666444444433322212222222
Q ss_pred ecceeEeeCCeEEEEeeCCEEEEEECCCCc-EEEEecCCCCCCCcCCC
Q 031361 105 RRMPHVWDDGALLLGHEKTSVFFVDAKSGG-MICSHESDNSASTLGSG 151 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~d~~lyalDa~TG~-~~W~~~~~~~~~~~~~~ 151 (161)
+-+|.+ |-|-=+|.+-||=-.-++. .+|++.....+-++.+|
T Consensus 140 --~HyVMq---v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH 182 (794)
T KOG0276|consen 140 --EHYVMQ---VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH 182 (794)
T ss_pred --ceEEEE---EEecCCCccceeeeeccccEEEEEcCCCCCceeeecc
Confidence 233333 4444556665554433343 45888877666555544
No 193
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=74.32 E-value=30 Score=25.00 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=48.1
Q ss_pred CEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeE
Q 031361 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHV 110 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v 110 (161)
..+++...||.+||++..--..... +. .-.+ +++-+|.|--.+ ..+|..||+.+..+..- .+..-|+-
T Consensus 28 ~~~~~~~~~g~v~A~~n~CpH~~~~------l~-~g~v-~~~~~i~Cp~H~--a~Fdl~tG~~~~~p~~~--~l~~y~vr 95 (106)
T COG2146 28 RFALVVRADGEVFAIDNRCPHAGAP------LS-RGLV-EGDETVVCPLHG--ARFDLRTGECLEPPAGK--TLKTYPVR 95 (106)
T ss_pred EEEEEEecCCEEEEEeCcCCCCCCc------cc-ccEe-CCCCEEECCccC--CEEEcCCCceecCCCCC--ceeEEeEE
Confidence 5788899999999999875544432 11 1111 222356664333 34588999996665432 27777776
Q ss_pred eeCCeEEEE
Q 031361 111 WDDGALLLG 119 (161)
Q Consensus 111 ~~dg~VyvG 119 (161)
.++|.|++.
T Consensus 96 ve~g~v~v~ 104 (106)
T COG2146 96 VEGGRVFVD 104 (106)
T ss_pred EECCEEEEe
Confidence 666777763
No 194
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=73.71 E-value=58 Score=28.01 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=27.5
Q ss_pred CCEEEEEECCCCCeeccccCcccceecceeEeeC--CeEEEEeeC
Q 031361 80 DWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDD--GALLLGHEK 122 (161)
Q Consensus 80 dg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~d--g~VyvGs~d 122 (161)
++.+.+++++ |++ .-.+.+...-.++|+.... +++||-|..
T Consensus 234 g~~v~~~~pd-G~l-~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 234 GGRVVRFNPD-GKL-LGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CceEEEECCC-CcE-EEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 3488888888 888 6666666666677776542 557765543
No 195
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=73.49 E-value=47 Score=29.59 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=61.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccc----------c
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS----------I 98 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~----------~ 98 (161)
-++.+++|+.--+++..|-.|=+- |-...|-.... +..--|--...|+||+-..++|.++.|- -
T Consensus 227 sGefllvgTdHp~~rlYdv~T~Qc---fvsanPd~qht---~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~ 300 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQC---FVSANPDDQHT---GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG 300 (430)
T ss_pred CCceEEEecCCCceeEEeccceeE---eeecCcccccc---cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH
Confidence 689999999999999999876432 21111111000 0000111112335555555555554441 1
Q ss_pred Ccc-cceecceeEeeCCeEEE-EeeCCEEEEEECCCCcEEEEecCCC
Q 031361 99 DVG-EFMRRMPHVWDDGALLL-GHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 99 ~~~-~~V~ssP~v~~dg~Vyv-Gs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.++ +.-.+|-...+|++-+. ..+|+.++.-+..||+.+.+|...+
T Consensus 301 ~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg 347 (430)
T KOG0640|consen 301 NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG 347 (430)
T ss_pred hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence 122 12233444555565444 4589999999999999999987653
No 196
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.40 E-value=61 Score=28.08 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=70.7
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-eecceEee--CCCeEEecCCCCEEEEEECC-CCCeeccccCccc
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-IYSSFTRN--DPDFYVDVGEDWKLYFHRKG-IGKMKKPSIDVGE 102 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i~ssp~~~--d~~~~V~~~ddg~Lyald~~-tG~~~~w~~~~~~ 102 (161)
++....++.+|=||+|-.-|...++-+=+|.-.+. |+.. +.. ..+++..++.|+.+-..|.+ .||.+- +.+++
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a-~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--i~ah~ 190 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA-AFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--IEAHN 190 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE-ecCCCCCCeEEEccCCceEEEEEecCCCceeE--EEecc
Confidence 45677888999999999999999999999876443 4432 222 44677788777777766643 344422 44443
Q ss_pred -ceeccee-EeeCCeEEEEeeCCEEEEEECCCCc
Q 031361 103 -FMRRMPH-VWDDGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 103 -~V~ssP~-v~~dg~VyvGs~d~~lyalDa~TG~ 134 (161)
.+.+.-- .+++..++.|+-|+.++.-|.++=+
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence 1222111 2455788999999999999976533
No 197
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=73.00 E-value=68 Score=30.21 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=70.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc-cceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~s 106 (161)
.++.++.-|.+|+|--+++..+++.=.+.-- .+|.+-....|++.+.-+.-||.+...+..+|..-+..=+.+ ..|.+
T Consensus 289 qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~ 368 (603)
T KOG0318|consen 289 QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG 368 (603)
T ss_pred eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence 4788899999999999999999987777543 355544333456554445557799988888887633321222 12433
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCc
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~ 134 (161)
.-+-. .+.+|.-++|.+|..++.+.+.
T Consensus 369 ~~~~~-~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 369 MAASE-SGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred EeecC-CCcEEEEecCCeEEEEecccCc
Confidence 33322 2669999999999999875443
No 198
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.83 E-value=49 Score=28.46 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=27.3
Q ss_pred EeeCCeEEEEeeCC-EEEEEECCCCcEEEEecCC
Q 031361 110 VWDDGALLLGHEKT-SVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 110 v~~dg~VyvGs~d~-~lyalDa~TG~~~W~~~~~ 142 (161)
+..+|.+||...+| +++-+|+.|||++..+...
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence 44458899998654 9999999999999998753
No 199
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=72.70 E-value=58 Score=28.16 Aligned_cols=105 Identities=11% Similarity=0.179 Sum_probs=56.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc-Ccccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI-DVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~-~~~~~V~ss 107 (161)
.+--.|.|++||++.--|.++=...-.|+..+|+..-..-.+..-.|-+.+.|++...|..+-.-..... +...+|++-
T Consensus 94 dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl 173 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSL 173 (311)
T ss_pred cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeE
Confidence 5667899999999998888875555556655554432111122233344456688877765442111111 112233333
Q ss_pred eeEeeCCeEE-EEeeCCEEEEEECCCCc
Q 031361 108 PHVWDDGALL-LGHEKTSVFFVDAKSGG 134 (161)
Q Consensus 108 P~v~~dg~Vy-vGs~d~~lyalDa~TG~ 134 (161)
-+-. ||... -+...|+.|+-+.-++.
T Consensus 174 ~v~~-dgsml~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 174 TVMP-DGSMLAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred EEcC-CCcEEEEecCCccEEEEEccCCC
Confidence 3333 35444 34566777776665543
No 200
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=72.47 E-value=26 Score=33.91 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=75.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeC-----CCeEEecCCCCEEEEEECCCCCeecccc-C-cc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRND-----PDFYVDVGEDWKLYFHRKGIGKMKKPSI-D-VG 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d-----~~~~V~~~ddg~Lyald~~tG~~~~w~~-~-~~ 101 (161)
.+..++.++.|-.++--|..+=+..=+.+.-..+-+-....+ +.+++-.++.|.+...|+++|+..+-.- . ..
T Consensus 203 d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~ 282 (775)
T KOG0319|consen 203 DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE 282 (775)
T ss_pred CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch
Confidence 467777788888888877755555544444444444333333 2466667778899999999998732221 1 23
Q ss_pred cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 102 EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 102 ~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
++....|+... +.++.-+.|.+++.+|.+++++..++-
T Consensus 283 e~~~~~~~~~~-~~~l~vtaeQnl~l~d~~~l~i~k~iv 320 (775)
T KOG0319|consen 283 EIDHLLAIESM-SQLLLVTAEQNLFLYDEDELTIVKQIV 320 (775)
T ss_pred hhhcceecccc-CceEEEEccceEEEEEccccEEehhhc
Confidence 34455666654 778888899999999999999988754
No 201
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=72.21 E-value=8.9 Score=32.01 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=44.5
Q ss_pred EEEEEecCCeEEEEeCCCCceeEE--EecCC-C-eecceEeeCC------CeEEecCCCCEEEEEECCCCCeeccccCcc
Q 031361 32 LALVATLNGTVHLVDTKRGESRWS--FSMGK-P-IYSSFTRNDP------DFYVDVGEDWKLYFHRKGIGKMKKPSIDVG 101 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~--f~t~~-~-i~ssp~~~d~------~~~V~~~ddg~Lyald~~tG~~~~w~~~~~ 101 (161)
-.++.+-+|.||++... +..+. ...+. . ...+.++.++ .+++. ..|.||++.. +|++.|++-...
T Consensus 37 ~~i~~~P~g~lY~I~~~--~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d--~~G~LYaV~~-~G~lyR~~~~~~ 111 (229)
T PF14517_consen 37 RDIAAGPNGRLYAIRND--GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFD--PTGVLYAVTP-DGKLYRHPRPTN 111 (229)
T ss_dssp SEEEE-TTS-EEEEETT--EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE---TTS-EEEEET-T-EEEEES---S
T ss_pred ceEEEcCCceEEEEECC--ceEEecCCccCcccccccCcccccCcccceeEEEec--CCccEEEecc-ccceeeccCCCc
Confidence 34567789999999954 55554 11211 1 2233334433 22333 3457777765 466545544333
Q ss_pred cc---ee-cceeEee----CCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 102 EF---MR-RMPHVWD----DGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 102 ~~---V~-ssP~v~~----dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+. .. ....+-+ |-..++...++.||+|+ .+|.+......
T Consensus 112 ~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~-~dg~~~~~~~p 158 (229)
T PF14517_consen 112 GSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT-PDGRLYRRYRP 158 (229)
T ss_dssp TT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE-TTE-EEEE---
T ss_pred cCcchhhccceecccCCCccceEEEeCCCccEEEEc-CCCceEEeCCC
Confidence 21 22 3333411 12245555699999999 55644443333
No 202
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=71.80 E-value=12 Score=33.74 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=66.1
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCC---CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc-
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGK---PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE- 102 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~---~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~- 102 (161)
|+...++-.+..|+.|+.+|.+++.|+=+.-++- .|.=.| +...|+-+.+|-+||.+|-..=+. +..+..
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP---eafnF~~a~ED~nlY~~DmR~l~~---p~~v~~d 270 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP---EAFNFVAANEDHNLYTYDMRNLSR---PLNVHKD 270 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc---cccceeeccccccceehhhhhhcc---cchhhcc
Confidence 4555555566699999999999999988765432 243333 336777888888999998654322 222221
Q ss_pred ------ceecceeEeeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 103 ------FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 103 ------~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
-|.-||.=.+ +.-||.|-++....+..|.-
T Consensus 271 hvsAV~dVdfsptG~E---fvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQE---FVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred cceeEEEeccCCCcch---hccccccceEEEeecCCCcc
Confidence 2444555322 66789998888888777753
No 203
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=71.67 E-value=12 Score=36.25 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=74.3
Q ss_pred CEEEEEecCCeEEEEeCCCCce---eEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 31 DLALVATLNGTVHLVDTKRGES---RWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 31 ~~V~vgs~DG~lyAvd~~tG~~---~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
.+++.|..||.+++.|..++++ .|+-... .+.+-....|+.-.+..+.|-.++..|..+=+. .-...+.|.+++.
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S-~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~-l~~lp~ye~~E~v 239 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKS-AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK-LKTLPLYESLESV 239 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhh-heeeeeeccCCceEEEeccCcEEEEeehhhhhh-hheechhhheeeE
Confidence 5678999999999999998888 3433222 222222233555666666776777777754444 3445666667776
Q ss_pred eeEee-----CCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 108 PHVWD-----DGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 108 P~v~~-----dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
-...+ ..-+|..+.+|.+--.|+++|+.+.+-+..
T Consensus 240 v~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~ 279 (775)
T KOG0319|consen 240 VRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQS 279 (775)
T ss_pred EEechhcCCcceEEEEecCCceEEEEecccchhhhhhccC
Confidence 66653 134677788999999999999998766544
No 204
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=71.59 E-value=50 Score=28.19 Aligned_cols=94 Identities=16% Similarity=0.219 Sum_probs=55.6
Q ss_pred eEEEEeCCCCceeEEEecCCC--e--ecceEe--eCCCeEEec--CCC-CEEEEEECCCCCeeccccCcccceeccee-E
Q 031361 41 TVHLVDTKRGESRWSFSMGKP--I--YSSFTR--NDPDFYVDV--GED-WKLYFHRKGIGKMKKPSIDVGEFMRRMPH-V 110 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~t~~~--i--~ssp~~--~d~~~~V~~--~dd-g~Lyald~~tG~~~~w~~~~~~~V~ssP~-v 110 (161)
.++.+|..+|+..+.++...+ + ...+.. .+++.|+-. .+| .+||.++..+|.. + ..+.++....+.+ +
T Consensus 211 ~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~-~lT~G~~~V~~i~~~ 288 (353)
T PF00930_consen 211 DLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-R-QLTSGDWEVTSILGW 288 (353)
T ss_dssp EEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-E-ESS-SSS-EEEEEEE
T ss_pred EEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-e-ccccCceeecccceE
Confidence 468899999999888764332 2 222222 244444322 233 5799999888876 4 4555554443333 4
Q ss_pred eeC-CeEE-EEeeC----CEEEEEECC-CCcEE
Q 031361 111 WDD-GALL-LGHEK----TSVFFVDAK-SGGMI 136 (161)
Q Consensus 111 ~~d-g~Vy-vGs~d----~~lyalDa~-TG~~~ 136 (161)
..+ +.|| .++.+ .+||.++.+ +|++.
T Consensus 289 d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 289 DEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp ECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred cCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence 333 4566 46653 499999999 55554
No 205
>PLN02153 epithiospecifier protein
Probab=71.34 E-value=62 Score=27.32 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=56.7
Q ss_pred CCCEEEE-EecC-------CeEEEEeCCCCceeEEEecCC---Cee----cceEeeCCCeEEecCCC-----CEEEEEEC
Q 031361 29 SGDLALV-ATLN-------GTVHLVDTKRGESRWSFSMGK---PIY----SSFTRNDPDFYVDVGED-----WKLYFHRK 88 (161)
Q Consensus 29 ~~~~V~v-gs~D-------G~lyAvd~~tG~~~W~f~t~~---~i~----ssp~~~d~~~~V~~~dd-----g~Lyald~ 88 (161)
.++.+|+ |..+ ..+|.+|..+. .|+..... |-. .+.++.++.+||.++.+ ..++.+|.
T Consensus 31 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 31 VGDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred ECCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEEC
Confidence 5667776 4432 35899998875 48864321 111 11233467777765521 25888998
Q ss_pred CCCCeeccccC--cc-----c-ceecceeEeeCCeEE-EEeeC-----------CEEEEEECCCCcEEEEe
Q 031361 89 GIGKMKKPSID--VG-----E-FMRRMPHVWDDGALL-LGHEK-----------TSVFFVDAKSGGMICSH 139 (161)
Q Consensus 89 ~tG~~~~w~~~--~~-----~-~V~ssP~v~~dg~Vy-vGs~d-----------~~lyalDa~TG~~~W~~ 139 (161)
.+. .|..- +. . ....+-++.+ +.+| +|..+ ..+++.|+++.+ |+.
T Consensus 109 ~t~---~W~~~~~~~~~~~p~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 173 (341)
T PLN02153 109 VKN---EWTFLTKLDEEGGPEARTFHSMASDE-NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK--WVQ 173 (341)
T ss_pred CCC---EEEEeccCCCCCCCCCceeeEEEEEC-CEEEEECCccCCCccCCCcccceEEEEECCCCe--Eee
Confidence 764 45421 11 0 1122223444 6676 56653 258889988774 664
No 206
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.29 E-value=34 Score=30.89 Aligned_cols=114 Identities=9% Similarity=0.112 Sum_probs=65.4
Q ss_pred CCCCCCCEEEEEecC--CeEEEEeCCCCceeEEEecCC--------Cee-cceEeeC---CCeEEecCCCCEEEEEECCC
Q 031361 25 ASPESGDLALVATLN--GTVHLVDTKRGESRWSFSMGK--------PIY-SSFTRND---PDFYVDVGEDWKLYFHRKGI 90 (161)
Q Consensus 25 ~s~~~~~~V~vgs~D--G~lyAvd~~tG~~~W~f~t~~--------~i~-ssp~~~d---~~~~V~~~ddg~Lyald~~t 90 (161)
.++-....|-.|... -.+---|...++++|+-+--. |+. ....+-+ ...++.|..-+++..+|.+.
T Consensus 156 ~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~ 235 (412)
T KOG3881|consen 156 QTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH 235 (412)
T ss_pred cCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcc
Confidence 334455555555555 444455556666677644211 111 1111112 23455665556777778876
Q ss_pred CCeeccccCcccc-eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 91 GKMKKPSIDVGEF-MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 91 G~~~~w~~~~~~~-V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
+..=...|...+. +.+.-...+.+.||+|...+.|..+|.++|++.-.
T Consensus 236 qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 236 QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred cCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 6442233444433 33444444447799999999999999999999866
No 207
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=71.00 E-value=9.1 Score=28.55 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=33.8
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCC-------CCCCCCCEEEEEecCCeEEEEeCCCCceeE
Q 031361 1 MRRSLIFLLLLTVILSSLPPTSPR-------ASPESGDLALVATLNGTVHLVDTKRGESRW 54 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~-------~s~~~~~~V~vgs~DG~lyAvd~~tG~~~W 54 (161)
|||.|+.+++.+.+.+++.....+ +.+......-.....|.|-++|..+|+..=
T Consensus 1 mk~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~G~V~~vd~~~~~iti 61 (115)
T PRK09838 1 MKKALKVAMFSLFSVIGFNAQANEHHQHGDMHEAMSAAQPQVISGTGVVKGIDLESKKITI 61 (115)
T ss_pred CchHHHHHHHHHHHHHhhhhhhcccccccccccccccccCceEEEEEEEEEEeCCCCEEEE
Confidence 899999988888876555322211 111111112225568999999999988763
No 208
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=69.79 E-value=15 Score=33.49 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=44.7
Q ss_pred CCCeEEecCCCCEEEEEECCCCCeeccccCcccc-eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEE
Q 031361 70 DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF-MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~-V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
.+..|+.|+|||.+-..|-..+++ ...+..... |.+.-=.-..+.|+.||+|+.+-..|++||.-+-+
T Consensus 191 nDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t 259 (464)
T KOG0284|consen 191 NDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT 259 (464)
T ss_pred CCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh
Confidence 345799999998888777666655 333333322 22211111137799999999999999999986543
No 209
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=69.45 E-value=15 Score=35.58 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=59.7
Q ss_pred CCCCCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEee--CC-------------CeEEecCCCCEEEEEECC
Q 031361 26 SPESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRN--DP-------------DFYVDVGEDWKLYFHRKG 89 (161)
Q Consensus 26 s~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~--d~-------------~~~V~~~ddg~Lyald~~ 89 (161)
||++++++-.+|.|-.+ .+|++.-+. +-.+.|.+. .+ |++++....|.+|..|..
T Consensus 88 spF~D~LLAT~S~D~~V---------KiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~s 158 (1012)
T KOG1445|consen 88 SPFADELLATCSRDEPV---------KIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDIS 158 (1012)
T ss_pred cccchhhhhcccCCCee---------EEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcc
Confidence 46677777777776654 578887332 111223221 12 455555567889999999
Q ss_pred CCCeeccccCcc-cceecceeEeeCCeEE-EEeeCCEEEEEECCC-CcEEEE
Q 031361 90 IGKMKKPSIDVG-EFMRRMPHVWDDGALL-LGHEKTSVFFVDAKS-GGMICS 138 (161)
Q Consensus 90 tG~~~~w~~~~~-~~V~ssP~v~~dg~Vy-vGs~d~~lyalDa~T-G~~~W~ 138 (161)
++|. .-..... +.|+++ .-.+||.+. +..+|-.+...|+++ ++.+..
T Consensus 159 tqk~-~~el~~h~d~vQSa-~WseDG~llatscKdkqirifDPRa~~~piQ~ 208 (1012)
T KOG1445|consen 159 TQKT-AVELSGHTDKVQSA-DWSEDGKLLATSCKDKQIRIFDPRASMEPIQT 208 (1012)
T ss_pred cCce-eecccCCchhhhcc-ccccCCceEeeecCCcceEEeCCccCCCcccc
Confidence 9988 4444333 344444 334557665 456777888888653 444443
No 210
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=69.26 E-value=18 Score=32.60 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=61.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc-cceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~ss 107 (161)
.+..+..+|.|-+|.--+..|++-+-++..-..-.+..+. .+.++|-++.|-.+..+|++.|+..| -.+-+ ++|++-
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwdi~~G~cLR-vLeGHEeLvRci 406 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLR-VLEGHEELVRCI 406 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc-cCeEEEecCCCceEEEEeccccHHHH-HHhchHHhhhhe
Confidence 4556667788888888888888777766554433333333 33455555556588888999998833 34444 344443
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAK 131 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~ 131 (161)
-.. +.++.-|..||++..-|..
T Consensus 407 -RFd-~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 407 -RFD-NKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred -eec-CceeeeccccceEEEEecc
Confidence 223 4678888888887654433
No 211
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=68.42 E-value=69 Score=30.62 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=71.9
Q ss_pred EEecCCeEEEEeCCCCceeEEEecCCCeec-ceEee----------C------------------------------CCe
Q 031361 35 VATLNGTVHLVDTKRGESRWSFSMGKPIYS-SFTRN----------D------------------------------PDF 73 (161)
Q Consensus 35 vgs~DG~lyAvd~~tG~~~W~f~t~~~i~s-sp~~~----------d------------------------------~~~ 73 (161)
.|+--=.|+|+|..+=.+...-.++..+.- .+... | -|+
T Consensus 69 tG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDl 148 (703)
T KOG2321|consen 69 TGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDL 148 (703)
T ss_pred ecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccE
Confidence 555666888999887777666555553221 11110 0 056
Q ss_pred EEecCCCCEEEEEECCCCCeeccccCcc-cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 74 YVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 74 ~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
|+.+. +..+|.++...|.- .-+|++. ..+..--.-..++.+-+|+.+|.+=+.|+++-..+-+.+...+
T Consensus 149 y~~gs-g~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~ 218 (703)
T KOG2321|consen 149 YLVGS-GSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS 218 (703)
T ss_pred EEeec-CcceEEEEcccccc-ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc
Confidence 66654 34899999999977 6677665 3333332222348788999999999999999988888776555
No 212
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=68.41 E-value=87 Score=28.21 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=68.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCccc-----
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE----- 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~----- 102 (161)
.++.+.-.+.|-++.+-|-.||.-+=+|...+.-+-..++. |+.++--|+.|-.|.-.-..++.- +--+.-.|
T Consensus 204 ~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~-k~~lR~hEh~vEc 282 (406)
T KOG0295|consen 204 LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC-KAELREHEHPVEC 282 (406)
T ss_pred cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh-hhhhhccccceEE
Confidence 57999999999999888888888888886655544333332 344444455554444333333310 00000001
Q ss_pred ----ceecceeEeeC-C------eEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 103 ----FMRRMPHVWDD-G------ALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 103 ----~V~ssP~v~~d-g------~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.-.+.|-+.+- + ....||+|.+|...|..||+.+-+...-
T Consensus 283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 12233443221 1 4568999999999999999888776543
No 213
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=68.40 E-value=80 Score=29.45 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=41.9
Q ss_pred CCCCCEEEEEecCC------eEEEEeCCCCceeEEEecCCC---eecceEeeCCCeEEecCCC------CEEEEEECCCC
Q 031361 27 PESGDLALVATLNG------TVHLVDTKRGESRWSFSMGKP---IYSSFTRNDPDFYVDVGED------WKLYFHRKGIG 91 (161)
Q Consensus 27 ~~~~~~V~vgs~DG------~lyAvd~~tG~~~W~f~t~~~---i~ssp~~~d~~~~V~~~dd------g~Lyald~~tG 91 (161)
+..+.++.+|..++ .+.++|+.++ .|..-+.-+ .+.+..+.++.+||-++.+ ..++.+|+.++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTN--EWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcC--cEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCC
Confidence 44577888888885 6789999998 566544322 2333344577777755544 35777888877
Q ss_pred C
Q 031361 92 K 92 (161)
Q Consensus 92 ~ 92 (161)
+
T Consensus 360 ~ 360 (571)
T KOG4441|consen 360 Q 360 (571)
T ss_pred c
Confidence 4
No 214
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=68.13 E-value=20 Score=28.95 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=20.8
Q ss_pred CeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 114 GALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 114 g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
+.+++|.++ .++.+|..||....-+.....
T Consensus 149 ~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~ 178 (275)
T PF00780_consen 149 NKICVGTSK-GFYLIDLNTGSPSELLDPSDS 178 (275)
T ss_pred CEEEEEeCC-ceEEEecCCCCceEEeCccCC
Confidence 567777744 478888888888776654443
No 215
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=67.66 E-value=14 Score=29.86 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=14.8
Q ss_pred cCCeEEEEeCCCCceeEEEecCC
Q 031361 38 LNGTVHLVDTKRGESRWSFSMGK 60 (161)
Q Consensus 38 ~DG~lyAvd~~tG~~~W~f~t~~ 60 (161)
..|+++.--+ |+.+|.+....
T Consensus 57 ~~G~~~~krP--~~frW~~~~P~ 77 (204)
T TIGR00547 57 GQGDLQIKRP--NLFNMEMKQPD 77 (204)
T ss_pred eEEEEEEeCC--CeEEEEEcCCC
Confidence 4677766555 79999997654
No 216
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=67.44 E-value=49 Score=28.26 Aligned_cols=87 Identities=17% Similarity=0.288 Sum_probs=49.4
Q ss_pred CCCEEEEEecCC--eEEEEeCCCCceeEEEecCC-CeecceEeeCC--CeEEecCC----CCEEEEEECC-CCCeecccc
Q 031361 29 SGDLALVATLNG--TVHLVDTKRGESRWSFSMGK-PIYSSFTRNDP--DFYVDVGE----DWKLYFHRKG-IGKMKKPSI 98 (161)
Q Consensus 29 ~~~~V~vgs~DG--~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~--~~~V~~~d----dg~Lyald~~-tG~~~~w~~ 98 (161)
.+..+.+...|| +||.+|..+|+++ .+..|. .+.+....... .+|.-+.. ..+||.++.. .|+++++.-
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred CCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 456677777777 7899999888866 332233 23332333322 34443332 3589999998 777766654
Q ss_pred CcccceecceeEeeCCeEEE
Q 031361 99 DVGEFMRRMPHVWDDGALLL 118 (161)
Q Consensus 99 ~~~~~V~ssP~v~~dg~Vyv 118 (161)
..+.- .++.++.|+.-|+
T Consensus 326 ~~~~~--~~~~~Spdg~y~v 343 (353)
T PF00930_consen 326 EDGDH--YSASFSPDGKYYV 343 (353)
T ss_dssp TSSTT--EEEEE-TTSSEEE
T ss_pred CCCCc--eEEEECCCCCEEE
Confidence 44432 3555655554443
No 217
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=66.76 E-value=46 Score=30.25 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=57.7
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceE--------ee-------CCCeEEecCCCCEEEEEECCCCC
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFT--------RN-------DPDFYVDVGEDWKLYFHRKGIGK 92 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~--------~~-------d~~~~V~~~ddg~Lyald~~tG~ 92 (161)
...+.++-|+.|+.+-..|......- .++...-. +. +.+.|.-++||+.|...|.+++.
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKE------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccC------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 46777888888888877666543322 11111111 11 23678788899999999998652
Q ss_pred eeccccCcc---cceecceeE-eeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 93 MKKPSIDVG---EFMRRMPHV-WDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 93 ~~~w~~~~~---~~V~ssP~v-~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
. +-.-.+. +.|.+.-+- .++..+-.||.|+++...|.++=+.
T Consensus 262 ~-~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 262 S-KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred C-CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 2 2222211 122222111 1224455799999999999876443
No 218
>PLN02153 epithiospecifier protein
Probab=66.60 E-value=79 Score=26.69 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=47.7
Q ss_pred eEEEEeCCCCceeEEEecCC--C--ee--cceEeeCCCeEEecC-C------------CCEEEEEECCCCCeecccc-Cc
Q 031361 41 TVHLVDTKRGESRWSFSMGK--P--IY--SSFTRNDPDFYVDVG-E------------DWKLYFHRKGIGKMKKPSI-DV 100 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~t~~--~--i~--ssp~~~d~~~~V~~~-d------------dg~Lyald~~tG~~~~w~~-~~ 100 (161)
.|+++|.++. .|+.-... + -. .+.++.++.+||-.+ + -..++++|+.+. .|.. +.
T Consensus 160 ~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~---~W~~~~~ 234 (341)
T PLN02153 160 TIEAYNIADG--KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG---KWTEVET 234 (341)
T ss_pred eEEEEECCCC--eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCC---cEEeccc
Confidence 5788898765 59864321 1 11 122334666666322 1 135888998765 3432 11
Q ss_pred ----ccce-ecceeEeeCCeEE-EEeeC--------------CEEEEEECCCCcEEEE
Q 031361 101 ----GEFM-RRMPHVWDDGALL-LGHEK--------------TSVFFVDAKSGGMICS 138 (161)
Q Consensus 101 ----~~~V-~ssP~v~~dg~Vy-vGs~d--------------~~lyalDa~TG~~~W~ 138 (161)
...- ..+-++.+ +.+| +|... ..+|++|..+-+ |+
T Consensus 235 ~g~~P~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~--W~ 289 (341)
T PLN02153 235 TGAKPSARSVFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV--WE 289 (341)
T ss_pred cCCCCCCcceeeeEEEC-CEEEEECcccCCccccccccccccccEEEEEcCccE--EE
Confidence 1111 12223444 5666 56641 279999987664 55
No 219
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=66.30 E-value=79 Score=26.59 Aligned_cols=56 Identities=11% Similarity=-0.139 Sum_probs=28.4
Q ss_pred EEEEEECCCCCeeccccCc--cc-ceecceeEeeCCeEE-EEeeC------CEEEEEECCCCcEEEEec
Q 031361 82 KLYFHRKGIGKMKKPSIDV--GE-FMRRMPHVWDDGALL-LGHEK------TSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 82 ~Lyald~~tG~~~~w~~~~--~~-~V~ssP~v~~dg~Vy-vGs~d------~~lyalDa~TG~~~W~~~ 140 (161)
.+..+|+.+. .|..-. .. ......++.-++.+| +|..+ ..++..|....+-.|+--
T Consensus 169 ~v~~YDp~t~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~ 234 (346)
T TIGR03547 169 NVLSYDPSTN---QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL 234 (346)
T ss_pred eEEEEECCCC---ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec
Confidence 5788898876 454422 21 112222233246777 45532 235555555556667643
No 220
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=66.04 E-value=12 Score=35.22 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=73.0
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe---eCCCeEEecCCCCEEEEEECCCCCeeccccCcccce
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR---NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFM 104 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~---~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V 104 (161)
..+.++++|..--+|.--|..+-.++=+-++...-.+..+. .|..+-.-|-.||++...|.++-.++| .|+-..-=
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr-qfqGhtDG 553 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDG 553 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee-cccCCCCC
Confidence 36788999998777776666666555554444322222221 144566666677799999998877633 33322111
Q ss_pred ecceeEeeCC-eEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 105 RRMPHVWDDG-ALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 105 ~ssP~v~~dg-~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
.++=-+.+|| +++.|.-|.++.+-|.++|+...+++.
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF 591 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF 591 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh
Confidence 1122234444 488999999999999999999988764
No 221
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=65.99 E-value=95 Score=28.95 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=44.3
Q ss_pred eEEEecCCCe-ecce--EeeCCCeEEecC-CC-----CEEEEEECCCCCeecccc--CcccceecceeEeeCCeEE-EEe
Q 031361 53 RWSFSMGKPI-YSSF--TRNDPDFYVDVG-ED-----WKLYFHRKGIGKMKKPSI--DVGEFMRRMPHVWDDGALL-LGH 120 (161)
Q Consensus 53 ~W~f~t~~~i-~ssp--~~~d~~~~V~~~-dd-----g~Lyald~~tG~~~~w~~--~~~~~V~ssP~v~~dg~Vy-vGs 120 (161)
.|++...-+. .+.. ++.++.+|+-++ ++ ..+.++|+.++ .|.. ++...=....+..-++.+| +|.
T Consensus 407 ~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M~~~R~~~g~a~~~~~iYvvGG 483 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPMNTRRSGFGVAVLNGKIYVVGG 483 (571)
T ss_pred cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCcccccccceEEEECCEEEEECC
Confidence 4777653322 1111 233666776444 22 24778899887 5544 3333222333433347787 577
Q ss_pred eCC-----EEEEEECCCCcEEE
Q 031361 121 EKT-----SVFFVDAKSGGMIC 137 (161)
Q Consensus 121 ~d~-----~lyalDa~TG~~~W 137 (161)
.|+ ++.+.|+++-+..-
T Consensus 484 ~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 484 FDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred ccCCCccceEEEEcCCCCceeE
Confidence 665 36778888776543
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=65.84 E-value=57 Score=27.76 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=40.8
Q ss_pred CCCCEEEEEecCCe---EEEEeCCCCceeE--EEecCCCeecceEee-CCC-eEEecCCCCEEEE--EECCCCCe
Q 031361 28 ESGDLALVATLNGT---VHLVDTKRGESRW--SFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYF--HRKGIGKM 93 (161)
Q Consensus 28 ~~~~~V~vgs~DG~---lyAvd~~tG~~~W--~f~t~~~i~ssp~~~-d~~-~~V~~~ddg~Lya--ld~~tG~~ 93 (161)
..+..+|++..... +|.+|..+|++.+ .+++++...-...+. +++ +||.+.+++.+.. +|.++|++
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 36788999886653 5777778888766 355544432223332 444 5666655556554 57789977
No 223
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.49 E-value=6.9 Score=37.22 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=69.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC------CeecceEeeCCCeEEecCCCCEEEEEECCCCCe-eccccC--
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK------PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM-KKPSID-- 99 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~------~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~-~~w~~~-- 99 (161)
..+.-++.|.||-+|.-|+--|+++=+..... .|.--+.+....++.+|.-...+-.+|++.+.- -.|+.-
T Consensus 793 L~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 793 LADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred eeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 56777899999999999999999876543221 122211111113455666666777789887732 123221
Q ss_pred -cccceecceeEeeC-CeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 100 -VGEFMRRMPHVWDD-GALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 100 -~~~~V~ssP~v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
........=+|.+. +.+-.|-.+|.+..+|++||+++=.|+.
T Consensus 873 ~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 11111122223332 4466788899999999999998866553
No 224
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.13 E-value=7.4 Score=38.88 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=43.2
Q ss_pred CCCeeccccCcccceecceeEeeC-------------------------CeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 90 IGKMKKPSIDVGEFMRRMPHVWDD-------------------------GALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 90 tG~~~~w~~~~~~~V~ssP~v~~d-------------------------g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
+|+.++..=-+++.|.++|++... ..||+|.-||.|++.|+.||.++-.|-....
T Consensus 534 ~~~~R~R~siLGDIinS~Pv~vG~p~~~~a~~~~~~~y~~F~~~~~~R~~~VyvgandGmLhaFd~~tG~E~fA~~P~av 613 (1036)
T COG3419 534 PGPFRIRTSILGDIINSSPVVVGAPGTTGAPFVPDGSYSTFKAQQANRAPVVYVGANDGMLHAFDANTGSERFAYVPSAV 613 (1036)
T ss_pred CCCceeccccccccccCcceEecCCccccCceecCCchhhhhhhcCCccceEEEecCCceeeeccCCccceeeecCcHHH
Confidence 345523333456778888876432 2699999999999999999999999987666
Q ss_pred CCCc
Q 031361 145 ASTL 148 (161)
Q Consensus 145 ~~~~ 148 (161)
++++
T Consensus 614 l~~l 617 (1036)
T COG3419 614 LSTL 617 (1036)
T ss_pred Hhhh
Confidence 5554
No 225
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=63.89 E-value=51 Score=29.92 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=54.4
Q ss_pred eEEEEeCCCCceeEEEecCC-----CeecceE-eeCCCeEEecCCCC------EEEEEECCCCCeeccccCccc----ce
Q 031361 41 TVHLVDTKRGESRWSFSMGK-----PIYSSFT-RNDPDFYVDVGEDW------KLYFHRKGIGKMKKPSIDVGE----FM 104 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~t~~-----~i~ssp~-~~d~~~~V~~~ddg------~Lyald~~tG~~~~w~~~~~~----~V 104 (161)
.||.+|..+ .+|++.... +.+++.. +.+...|+.++.+. .|+.+|..|++- ...-..++ ..
T Consensus 89 dl~~~d~~~--~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W-~~l~~~~~~P~~r~ 165 (482)
T KOG0379|consen 89 DLYVLDLES--QLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTW-SLLSPTGDPPPPRA 165 (482)
T ss_pred eeEEeecCC--cccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcE-EEecCcCCCCCCcc
Confidence 389999876 889886532 3344333 23556677666553 699999988844 22222222 12
Q ss_pred ecceeEeeCCeEEEEee------CCEEEEEECCCCc
Q 031361 105 RRMPHVWDDGALLLGHE------KTSVFFVDAKSGG 134 (161)
Q Consensus 105 ~ssP~v~~dg~VyvGs~------d~~lyalDa~TG~ 134 (161)
..+=++.++..+++|.. ...+|++|.+|=+
T Consensus 166 ~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~ 201 (482)
T KOG0379|consen 166 GHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETST 201 (482)
T ss_pred cceEEEECCEEEEECCccCcccceeeeeeecccccc
Confidence 22333455344456653 4579999999988
No 226
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=63.62 E-value=25 Score=31.59 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=58.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF 103 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~ 103 (161)
.+..++.++.|++|+......=-.+=+|-.|. ..++++...++...+-++.|++||..|-.+|+. .-.+.+..+
T Consensus 162 D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~-L~t~dl~s~ 236 (390)
T KOG3914|consen 162 DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKL-LDTCDLSSL 236 (390)
T ss_pred CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCc-ccccchhHh
Confidence 56899999999999999988777777777765 466777777887777777777999999999998 565655543
No 227
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.39 E-value=53 Score=31.64 Aligned_cols=106 Identities=8% Similarity=0.099 Sum_probs=59.4
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEEecCCC-eecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc----ceec
Q 031361 32 LALVATLNGTVHLVDTKRGESRWSFSMGKP-IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE----FMRR 106 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~----~V~s 106 (161)
.+.-|+..+.|+-.|.+|++.+=+++.-.. +..-..-.|++-.+-++.||.+.-.|...-+= .-.+.++. ...+
T Consensus 185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-l~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-LATYIVHKEGVWALQS 263 (735)
T ss_pred EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce-eeeEEeccCceEEEee
Confidence 556688999999999999999988872211 22211112444444444444433333211000 00111111 2344
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCC-CcEEEEecC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKS-GGMICSHES 141 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~T-G~~~W~~~~ 141 (161)
+|.+.. ||.|.+|+.+|.-|.++ -+..--++.
T Consensus 264 ~~sf~~---vYsG~rd~~i~~Tdl~n~~~~tlick~ 296 (735)
T KOG0308|consen 264 SPSFTH---VYSGGRDGNIYRTDLRNPAKSTLICKE 296 (735)
T ss_pred CCCcce---EEecCCCCcEEecccCCchhheEeecC
Confidence 566644 99999999999999988 333333433
No 228
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=63.39 E-value=5.2 Score=25.30 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=13.6
Q ss_pred ChhHHHHHHHHHHHhcCC
Q 031361 1 MRRSLIFLLLLTVILSSL 18 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~ 18 (161)
|+|+|++++|+-.+.+++
T Consensus 3 lKKsllLlfflG~ISlSl 20 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSL 20 (46)
T ss_pred chHHHHHHHHHHHcccch
Confidence 789998877776666665
No 229
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=63.38 E-value=46 Score=30.65 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=55.7
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecce-EeeCCCeE--EecCCCCEEEEEECCCCCeeccccCcc---
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSF-TRNDPDFY--VDVGEDWKLYFHRKGIGKMKKPSIDVG--- 101 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp-~~~d~~~~--V~~~ddg~Lyald~~tG~~~~w~~~~~--- 101 (161)
+.++-.+.||.||.|+..+..+-+|+-+++...++..-+ .++.+-|+ +...-+..|.|..+.+|-++.|...-+
T Consensus 336 In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 336 INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred ecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 367888899999999999999888888887665544331 22222121 122234478999999999989988766
Q ss_pred -cceeccee
Q 031361 102 -EFMRRMPH 109 (161)
Q Consensus 102 -~~V~ssP~ 109 (161)
+++.+-|+
T Consensus 416 i~~l~~ls~ 424 (479)
T KOG0299|consen 416 INLLYSLSL 424 (479)
T ss_pred cceeeeccc
Confidence 34555454
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=62.66 E-value=88 Score=26.60 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=52.4
Q ss_pred EEEEEecC----CeEEEEeC--CCCceeEEEecCCCeecceEee--CC-CeEEecC---CCCEEEEEE--CCCCCeeccc
Q 031361 32 LALVATLN----GTVHLVDT--KRGESRWSFSMGKPIYSSFTRN--DP-DFYVDVG---EDWKLYFHR--KGIGKMKKPS 97 (161)
Q Consensus 32 ~V~vgs~D----G~lyAvd~--~tG~~~W~f~t~~~i~ssp~~~--d~-~~~V~~~---ddg~Lyald--~~tG~~~~w~ 97 (161)
++|+|+.+ +.||.++. .+|++.-.-........++.+. ++ .+|+-.. +.+.+.++. .++|++....
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 58999998 67766655 7777654433222122222222 12 2444332 345655543 4446552211
Q ss_pred cCcccceecceeE---eeC-CeEEEEe-eCCEEEEEECCC-CcEEEE
Q 031361 98 IDVGEFMRRMPHV---WDD-GALLLGH-EKTSVFFVDAKS-GGMICS 138 (161)
Q Consensus 98 ~~~~~~V~ssP~v---~~d-g~VyvGs-~d~~lyalDa~T-G~~~W~ 138 (161)
+.. ..-.+|+. ..| ..+|+.. .++++..++..+ |++...
T Consensus 81 -~~~-~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~ 125 (345)
T PF10282_consen 81 -SVP-SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEV 125 (345)
T ss_dssp -EEE-ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEE
T ss_pred -eec-cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccccee
Confidence 111 13345552 223 4577766 477776666544 776654
No 231
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.64 E-value=68 Score=28.76 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCCEEEEE--ecCCeEEEEeCCCCceeEEEecC---CCee-cceEeeCCCeEEecCCC----------CEEEEEECCCC
Q 031361 29 SGDLALVA--TLNGTVHLVDTKRGESRWSFSMG---KPIY-SSFTRNDPDFYVDVGED----------WKLYFHRKGIG 91 (161)
Q Consensus 29 ~~~~V~vg--s~DG~lyAvd~~tG~~~W~f~t~---~~i~-ssp~~~d~~~~V~~~dd----------g~Lyald~~tG 91 (161)
.++++||| |.-+..|.+|.+.+...|+-... .+-. +..++.++.+||..+-+ -..|.+|+.+-
T Consensus 45 ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n 123 (381)
T COG3055 45 IGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN 123 (381)
T ss_pred ecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC
Confidence 66788865 55889999999999999996542 2222 22233456666643311 13677776544
No 232
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=62.36 E-value=1.4e+02 Score=28.23 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=45.0
Q ss_pred CeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCe-EEEEeeCCEEEEEECCCCcEEEE
Q 031361 72 DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGA-LLLGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 72 ~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~-VyvGs~d~~lyalDa~TG~~~W~ 138 (161)
...|+..|+-.|-.+|..+|++++-.-.++ .|.+--+-. ||. +.++.....+..+|.+||+..=-
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg-~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLG-NIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCCcc-ceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 455666555578888999998744444444 354444433 344 88899999999999999987643
No 233
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.13 E-value=87 Score=27.79 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeec-ceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS-SFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~s-sp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
-+.+.+.-..|+.|+-.|.-+|+..--.+...--.. .. .+.++.|+-.+.+ .+=++-..+-++ -...+....+.+.
T Consensus 138 S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w-~~~Gd~F~v~~~~-~i~i~q~d~A~v-~~~i~~~~r~l~~ 214 (362)
T KOG0294|consen 138 SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSW-SPQGDHFVVSGRN-KIDIYQLDNASV-FREIENPKRILCA 214 (362)
T ss_pred CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEE-cCCCCEEEEEecc-EEEEEecccHhH-hhhhhccccceee
Confidence 466777788899999999999988777655432111 01 1244544333222 222223333344 2222333346677
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
|...+ +.+++|..|..+-+.|-.++...-.|.
T Consensus 215 ~~l~~-~~L~vG~d~~~i~~~D~ds~~~~~~~~ 246 (362)
T KOG0294|consen 215 TFLDG-SELLVGGDNEWISLKDTDSDTPLTEFL 246 (362)
T ss_pred eecCC-ceEEEecCCceEEEeccCCCccceeee
Confidence 77776 779999999999999988776655544
No 234
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=61.88 E-value=55 Score=23.28 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=34.1
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecc
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w 96 (161)
|+.+...+.-..||.|.-.|. +|+++|+=.+.... +...+--.|+|+|..++. .|+. .|
T Consensus 51 ~~~~~~~l~l~~dGnLvl~~~-~g~~vW~S~t~~~~--------~~~~~~L~ddGnlvl~~~-~~~~-~W 109 (114)
T smart00108 51 PVSDSCTLTLQSDGNLVLYDG-DGRVVWSSNTTGAN--------GNYVLVLLDDGNLVIYDS-DGNF-LW 109 (114)
T ss_pred CCCCCEEEEEeCCCCEEEEeC-CCCEEEEecccCCC--------CceEEEEeCCCCEEEECC-CCCE-Ee
Confidence 433334455567999999987 48999986654111 112223335667766654 4555 44
No 235
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=61.64 E-value=21 Score=32.57 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=38.4
Q ss_pred CCEEEEEECCCCCeeccccCcccc----eecceeEeeCCeEEEE--eeC---CEEEEEECCCCcEEE
Q 031361 80 DWKLYFHRKGIGKMKKPSIDVGEF----MRRMPHVWDDGALLLG--HEK---TSVFFVDAKSGGMIC 137 (161)
Q Consensus 80 dg~Lyald~~tG~~~~w~~~~~~~----V~ssP~v~~dg~VyvG--s~d---~~lyalDa~TG~~~W 137 (161)
..+|..+|+.++++ .|-..+... +..+|++. +|.+|++ ..+ ..+|-+|+.|++...
T Consensus 366 ~~~laI~d~~~kt~-t~V~glP~~~is~~~~~~~ve-~G~aYi~Vtt~~g~~~~IY~iDp~TatAtK 430 (435)
T PF14298_consen 366 AKKLAIFDVSNKTF-TWVTGLPADLISGFGNAPYVE-NGKAYIPVTTEDGSDPYIYKIDPATATATK 430 (435)
T ss_pred cceEEEEEccCcee-EEeccCChhhccccccceEee-CCEEEEEEeecCCCceeEEEEcCccccccc
Confidence 34677789999998 664444432 33467775 5889975 233 489999999987653
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=61.52 E-value=1.5e+02 Score=28.00 Aligned_cols=109 Identities=12% Similarity=0.144 Sum_probs=74.2
Q ss_pred EEecCCeEEEEeCCCCceeEEEecCCCeecceEe------e------------------CCCeEEecCCCCEEEEEECCC
Q 031361 35 VATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR------N------------------DPDFYVDVGEDWKLYFHRKGI 90 (161)
Q Consensus 35 vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~------~------------------d~~~~V~~~ddg~Lyald~~t 90 (161)
..+.||.|.-.|-.++++.=.|.......++-.. . |-...|-+...|.+..++...
T Consensus 10 ~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~ 89 (541)
T KOG4547|consen 10 LSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAG 89 (541)
T ss_pred ecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecC
Confidence 4677999999999999988777543332222111 0 224555555667899999999
Q ss_pred CCeeccccCcccceecceeEe-e--CCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 91 GKMKKPSIDVGEFMRRMPHVW-D--DGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 91 G~~~~w~~~~~~~V~ssP~v~-~--dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
|++ .|+++++.--..--.+. . =+-+|-++.|..+--++.++++.+..+.-...
T Consensus 90 g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~ 145 (541)
T KOG4547|consen 90 GEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP 145 (541)
T ss_pred CeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC
Confidence 999 99998774332222222 1 15588899999999999999999987775443
No 237
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.47 E-value=71 Score=27.53 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=55.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCc-------------eeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGE-------------SRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKK 95 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~-------------~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~ 95 (161)
++.++-..+.|++|.-+..++.. |.|+..-..|-+++.. --|.-||++......+| +
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iL-------AScsYDgkVIiWke~~g---~ 91 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTIL-------ASCSYDGKVIIWKEENG---R 91 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEe-------eEeecCceEEEEecCCC---c
Confidence 56677778888877666554443 4566655555444333 23444556665555555 3
Q ss_pred cccC----cc----cceecceeEeeCCeEEEEeeCCEEEEEECCCC
Q 031361 96 PSID----VG----EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSG 133 (161)
Q Consensus 96 w~~~----~~----~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG 133 (161)
|.-. .. .-|.-+|.-+. -.+..+|.||++-.|+.++-
T Consensus 92 w~k~~e~~~h~~SVNsV~wapheyg-l~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 92 WTKAYEHAAHSASVNSVAWAPHEYG-LLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred hhhhhhhhhhcccceeecccccccc-eEEEEeeCCCcEEEEEEcCC
Confidence 4221 11 12445666554 55778999999999986654
No 238
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=61.31 E-value=39 Score=30.86 Aligned_cols=128 Identities=12% Similarity=0.047 Sum_probs=73.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCC-CeEEecCCCCEEEEEECCCCCeeccccCcc-cceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-EFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~~V~s 106 (161)
.+.+....|.||+|.--|-...++-=.+..-+--+.+..-... -.++-.++|.-+-..|+++|.. .-..... +-|.+
T Consensus 191 nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c-l~tlh~HKntVl~ 269 (464)
T KOG0284|consen 191 NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC-LATLHGHKNTVLA 269 (464)
T ss_pred CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch-hhhhhhccceEEE
Confidence 6667778899999976666555553333221111111110011 1233334554555669999977 3333333 33333
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCceee
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPMKKS 157 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~~ 157 (161)
.-.--+.+-+..+|+|..+-.+|.++=+.+.+|+.....-.-.+-.|+.++
T Consensus 270 ~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 270 VKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred EEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence 333222255778999999999999998888888866555555555555544
No 239
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=60.52 E-value=50 Score=31.79 Aligned_cols=119 Identities=24% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCC--ceeEEEec------C-CCeecceEeeC-C--CeEEecCCCCEEEEEECCCCCeecc
Q 031361 29 SGDLALVATLNGTVHLVDTKRG--ESRWSFSM------G-KPIYSSFTRND-P--DFYVDVGEDWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG--~~~W~f~t------~-~~i~ssp~~~d-~--~~~V~~~ddg~Lyald~~tG~~~~w 96 (161)
...+|--|..|+.|..-|..+| ++.=+|.. + ++..+-+..+. + ..+|.++-.+.|...|++|++. .-
T Consensus 129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k-im 207 (735)
T KOG0308|consen 129 NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK-IM 207 (735)
T ss_pred CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc-ee
Confidence 4567778999999999999888 45555542 1 22222222222 2 3566665555788889999987 55
Q ss_pred ccCccc-ceecceeEeeCC-eEEEEeeCCEEEEEEC------------CCCcEEEEecCCCCCCCcCCC
Q 031361 97 SIDVGE-FMRRMPHVWDDG-ALLLGHEKTSVFFVDA------------KSGGMICSHESDNSASTLGSG 151 (161)
Q Consensus 97 ~~~~~~-~V~ssP~v~~dg-~VyvGs~d~~lyalDa------------~TG~~~W~~~~~~~~~~~~~~ 151 (161)
+...+- -|+.- ++.+|| ++.-||.|+++..=|. +.| +|......++..+=++
T Consensus 208 kLrGHTdNVr~l-l~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~--VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 208 KLRGHTDNVRVL-LVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG--VWALQSSPSFTHVYSG 273 (735)
T ss_pred eeeccccceEEE-EEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc--eEEEeeCCCcceEEec
Confidence 554332 23332 234455 5778999998866553 334 7777777666655444
No 240
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=60.20 E-value=74 Score=31.25 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=61.1
Q ss_pred CCEEEEEecCCeEEEEeCCCC--ceeEE----EecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc-Cccc
Q 031361 30 GDLALVATLNGTVHLVDTKRG--ESRWS----FSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI-DVGE 102 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG--~~~W~----f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~-~~~~ 102 (161)
+.-.|+|-.+-.|+-+|++-. +++|+ |+++.....-.+..+|.+-|+. .+|.+.-+| +.|+.=+-.+ .+++
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs-~~G~IRLyd-~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGS-NKGDIRLYD-RLGKRAKTALPGLGD 619 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEe-CCCcEEeec-ccchhhhhcCCCCCC
Confidence 457889999999999999863 46773 4455554433223344444555 455776667 3453312222 2244
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECC
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAK 131 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~ 131 (161)
+|..-=+ +.||+=+++++++.|..+|..
T Consensus 620 pI~~iDv-t~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 620 PIIGIDV-TADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred CeeEEEe-cCCCcEEEEeecceEEEEEEe
Confidence 4443333 345989999999999999963
No 241
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=59.86 E-value=1.1e+02 Score=26.27 Aligned_cols=37 Identities=8% Similarity=-0.135 Sum_probs=20.0
Q ss_pred EEEEEECCCCCeeccccC--ccc-ceecceeEeeCCeEE-EEee
Q 031361 82 KLYFHRKGIGKMKKPSID--VGE-FMRRMPHVWDDGALL-LGHE 121 (161)
Q Consensus 82 ~Lyald~~tG~~~~w~~~--~~~-~V~ssP~v~~dg~Vy-vGs~ 121 (161)
.++.+|+.+. .|... +.. ......++..++.+| +|..
T Consensus 190 ~v~~YD~~t~---~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTN---QWKNAGESPFLGTAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCC---eeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence 5888998776 45432 221 222334444347777 5653
No 242
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.79 E-value=30 Score=35.08 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=66.8
Q ss_pred CCCCCCCEEEEEecCCeEEEEeCCCCceeEEEe----cCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 25 ASPESGDLALVATLNGTVHLVDTKRGESRWSFS----MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 25 ~s~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~----t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
.+++....+.+||.-|++-+.|. +|++.| +. +.+|+.+..--.|+....-+..+|.+..+|.+++++.+--+.
T Consensus 94 s~a~~~~~ivi~Ts~ghvl~~d~-~~nL~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e- 170 (1206)
T KOG2079|consen 94 SSAIVVVPIVIGTSHGHVLLSDM-TGNLGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE- 170 (1206)
T ss_pred eeeeeeeeEEEEcCchhhhhhhh-hcccch-hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee-
Confidence 44567777888999999988888 688887 43 334444322222555555555678999999999888333322
Q ss_pred ccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 101 GEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 101 ~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
..+|.. +.++++-....=-++..++|-..|+..-..++-
T Consensus 171 ----~~ap~t---~vi~v~~t~~nS~llt~D~~Gsf~~lv~nk~~L 209 (1206)
T KOG2079|consen 171 ----HGAPVT---GVIFVGRTSQNSKLLTSDTGGSFWKLVFNKALL 209 (1206)
T ss_pred ----cCCccc---eEEEEEEeCCCcEEEEccCCCceEEEEechhhh
Confidence 234442 434444322211455556777788766544433
No 243
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=59.71 E-value=14 Score=24.19 Aligned_cols=27 Identities=44% Similarity=0.638 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHHH---hcCCCCC-CCCCCC
Q 031361 1 MRRSLIFLLLLTVI---LSSLPPT-SPRASP 27 (161)
Q Consensus 1 ~~~~~~~~l~~~~~---~~~~~~~-~~~~s~ 27 (161)
|-|+|-|+|+++++ +||-|++ ++--||
T Consensus 1 mlk~lkf~lv~imlaqllsctpsapyeiksp 31 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSCTPSAPYEIKSP 31 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCccccCC
Confidence 66777777776666 8888888 444554
No 244
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=59.63 E-value=45 Score=31.32 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=45.7
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee--CCCeEEecCCCCEEEEEECCCCCe
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
..++.+++|..||.|...|..++-..+.- + ++.-+..+. ++.+++-+++.|.|-++|-.-.-.
T Consensus 269 p~E~kLvlGC~DgSiiLyD~~~~~t~~~k-a--~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 269 PSEDKLVLGCEDGSIILYDTTRGVTLLAK-A--EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cccceEEEEecCCeEEEEEcCCCeeeeee-e--cccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 57899999999999999999999888762 2 222222222 566777777778999999654433
No 245
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=59.01 E-value=1.4e+02 Score=27.01 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee--CCCeEEecCCCCEEEEEEC-----C-------------
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRK-----G------------- 89 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~--d~~~~V~~~ddg~Lyald~-----~------------- 89 (161)
.+.+-|-|.||.|+-++.++--. +....+-+.-.|... .-|-+|-+..++.|.++.- .
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f--~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~ 222 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAF--SRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD 222 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEE--EEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence 58999999999999999965433 333333322223221 2245555544555544321 1
Q ss_pred --CCCe--eccccCcccceecceeEee--CCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCc
Q 031361 90 --IGKM--KKPSIDVGEFMRRMPHVWD--DGALLLGHEKTSVFFVDAKSGGMICSHESDNSASTL 148 (161)
Q Consensus 90 --tG~~--~~w~~~~~~~V~ssP~v~~--dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~ 148 (161)
+|+. --|.+.++|.+..-=++.. ...-++-=.+.+||+|+. +|+++|.-+.+..+..+
T Consensus 223 ~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~ 286 (418)
T PF14727_consen 223 ISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCF 286 (418)
T ss_pred ccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCceeeE
Confidence 2221 1589999987666555431 112333444669999995 89999998887665543
No 246
>PRK05560 DNA gyrase subunit A; Validated
Probab=58.98 E-value=81 Score=30.81 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=57.3
Q ss_pred CCCEEEEEecCCeEEEEeC---------CCCcee---EEEecCCCeecceEee---CCCeEEecCCCCEEEEEECC----
Q 031361 29 SGDLALVATLNGTVHLVDT---------KRGESR---WSFSMGKPIYSSFTRN---DPDFYVDVGEDWKLYFHRKG---- 89 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~---------~tG~~~---W~f~t~~~i~ssp~~~---d~~~~V~~~ddg~Lyald~~---- 89 (161)
..+.+++.|.+|++|.+.. ..|.++ .++..+..|.+...+. ++..++-....|.+-.++..
T Consensus 547 t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~ 626 (805)
T PRK05560 547 THDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSN 626 (805)
T ss_pred CCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 4677888888999999965 346665 3344455565544443 33444444455566555431
Q ss_pred ---CCCeeccccCccc-ceecceeEeeCCeEEEEeeCCEEEEEECC
Q 031361 90 ---IGKMKKPSIDVGE-FMRRMPHVWDDGALLLGHEKTSVFFVDAK 131 (161)
Q Consensus 90 ---tG~~~~w~~~~~~-~V~ssP~v~~dg~VyvGs~d~~lyalDa~ 131 (161)
.|.. --+++-++ .+...++-.+ ..+++-+..|.+|.+.+.
T Consensus 627 ~~r~G~~-~ikLke~D~lv~v~~~~~~-d~lll~T~~Gr~~r~~~~ 670 (805)
T PRK05560 627 IRSNGII-AINLDEGDELIGVRLTDGD-DDILLATKNGKAIRFPES 670 (805)
T ss_pred cccCCce-eeccCCCCEEEEEEEeCCC-CEEEEEECCCcEEEEEhh
Confidence 1222 22332233 3333444333 558888888988888754
No 247
>KOG4328 consensus WD40 protein [Function unknown]
Probab=58.54 E-value=25 Score=32.38 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCCCCCCEEEEEecCCeEEEEeCCCCc--eeEEEecCCCeecceEeeCC--CeEEecCCCCEEEEEECCCCCeeccccCc
Q 031361 25 ASPESGDLALVATLNGTVHLVDTKRGE--SRWSFSMGKPIYSSFTRNDP--DFYVDVGEDWKLYFHRKGIGKMKKPSIDV 100 (161)
Q Consensus 25 ~s~~~~~~V~vgs~DG~lyAvd~~tG~--~~W~f~t~~~i~ssp~~~d~--~~~V~~~ddg~Lyald~~tG~~~~w~~~~ 100 (161)
=+|...+.||..|.||++++.|.+++. ++-+.+++..+.++.++..+ .++++..-| .+-.+|.++++--.|+..+
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhh
Confidence 346788999999999999999998774 33444445555555555432 344433223 6777787655443666655
Q ss_pred cc
Q 031361 101 GE 102 (161)
Q Consensus 101 ~~ 102 (161)
.+
T Consensus 321 h~ 322 (498)
T KOG4328|consen 321 HK 322 (498)
T ss_pred hh
Confidence 53
No 248
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=58.40 E-value=27 Score=30.71 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=62.3
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCC--CeEEecCCCCEEEEEECCCCCeeccccCccc-
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDP--DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE- 102 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~--~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~- 102 (161)
|-+++.-+..+.|+++.+.|.+|-+..|+.+-.. ...-.--.+.+ -+.+-|+|||.+...|.+.-+. .+.+
T Consensus 180 pHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-----pv~el 254 (370)
T KOG1007|consen 180 PHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-----PVQEL 254 (370)
T ss_pred CCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-----ccccc
Confidence 5578888889999999999999999999986532 22222222223 3567899999998888654322 1111
Q ss_pred --------ceecceeEeeCCeEEEEeeCCEEEEEE
Q 031361 103 --------FMRRMPHVWDDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 103 --------~V~ssP~v~~dg~VyvGs~d~~lyalD 129 (161)
.|+--|.. |-.|..|+.|..+-.=.
T Consensus 255 ~~HsHWvW~VRfn~~h--dqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEH--DQLILSGGSDSAVNLSC 287 (370)
T ss_pred CCCceEEEEEEecCcc--ceEEEecCCCceeEEEe
Confidence 13444443 35577788887665443
No 249
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=57.77 E-value=86 Score=28.03 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCC-C--eecceEeeCCCeEEecC-----CCCEEEEEECCCCCe-eccccC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-P--IYSSFTRNDPDFYVDVG-----EDWKLYFHRKGIGKM-KKPSID 99 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~-~--i~ssp~~~d~~~~V~~~-----ddg~Lyald~~tG~~-~~w~~~ 99 (161)
....|+.++.||+|++.|.++-...=+++... | ...+...+-+..++-|+ .+-.|+.+|.+.-+. .+--.+
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 56789999999999999999877665554332 2 11222221123444443 345677778765433 111111
Q ss_pred cc-cceecceeEee-CCeEEEEeeCCEEEEEECC
Q 031361 100 VG-EFMRRMPHVWD-DGALLLGHEKTSVFFVDAK 131 (161)
Q Consensus 100 ~~-~~V~ssP~v~~-dg~VyvGs~d~~lyalDa~ 131 (161)
.+ +-|..-=+.-. .+.+.-||-||-+=..|.+
T Consensus 163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred hccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 11 12322223322 2557789999977777743
No 250
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=56.12 E-value=1.2e+02 Score=26.60 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=66.5
Q ss_pred CCCEEE-EEecCCeEEEEeCCCCceeEEEecCCCeecceEee--CC-CeEEecCCCCEEEEEECCCCCeeccccCcc--c
Q 031361 29 SGDLAL-VATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN--DP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVG--E 102 (161)
Q Consensus 29 ~~~~V~-vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~--d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~--~ 102 (161)
.++.|. -+.-.|.+==+|.+||+.. ++..+.--+-...+. |+ .++...+. .+-.+|.+|+...+|++..+ .
T Consensus 71 pdG~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Witd~~~--aI~R~dpkt~evt~f~lp~~~a~ 147 (353)
T COG4257 71 PDGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWITDTGL--AIGRLDPKTLEVTRFPLPLEHAD 147 (353)
T ss_pred CCCceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEecCcc--eeEEecCcccceEEeecccccCC
Confidence 566554 4555667888999999976 454443222111121 22 23333221 56668888999989987654 3
Q ss_pred ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEE
Q 031361 103 FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMI 136 (161)
Q Consensus 103 ~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~ 136 (161)
.=..++++.++|.+.|-...|.-=-||+.++.+.
T Consensus 148 ~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~ 181 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS 181 (353)
T ss_pred CcccceeeCCCccEEEeeccccceecCcccCcee
Confidence 3455788888898987666776668898887653
No 251
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=55.67 E-value=33 Score=30.56 Aligned_cols=131 Identities=18% Similarity=0.273 Sum_probs=79.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec--C-CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCc---cc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM--G-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDV---GE 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t--~-~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~---~~ 102 (161)
-+.+...||.||.|...|-.+++-+=+|.- + ..|-+..-..++.++.-++.|..++-.+..||...+-...+ +.
T Consensus 272 t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgr 351 (430)
T KOG0640|consen 272 TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGR 351 (430)
T ss_pred CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccc
Confidence 456666799999999999999988888753 2 33443322234556667777878887888888874444444 33
Q ss_pred ceecceeEe---eCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC-CCCcCCCCCceeeee
Q 031361 103 FMRRMPHVW---DDGALLLGHEKTSVFFVDAKSGGMICSHESDNS-ASTLGSGLPMKKSFV 159 (161)
Q Consensus 103 ~V~ssP~v~---~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~-~~~~~~~~~~~~~~~ 159 (161)
..-.+-++. +|-+++.-...+.|-.-|++|+..+-....+.. ..--=.|+|....|+
T Consensus 352 q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 352 QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred hhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee
Confidence 333344443 223344556677888888888876643332211 112224566555443
No 252
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=55.62 E-value=73 Score=22.74 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=32.6
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCe
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
....+.-..||.|+..|. +|.++|+=.+.+. .. ....--.+||+|...+.. |+.
T Consensus 55 ~~~~l~l~~dGnLvl~~~-~g~~vW~S~~~~~--~~------~~~~~L~ddGnlvl~~~~-~~~ 108 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDG-SGTVVWSSNTTRV--NG------NYVLVLLDDGNLVLYDSD-GNF 108 (116)
T ss_pred CCEEEEEecCCCeEEEcC-CCcEEEEecccCC--CC------ceEEEEeCCCCEEEECCC-CCE
Confidence 334445577999999888 5899998766541 11 122223356676666643 565
No 253
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=55.35 E-value=77 Score=22.90 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=36.1
Q ss_pred ceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecccc-CcccceecceeEeeCCeEEEEeeCCEEEEEE
Q 031361 51 ESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSI-DVGEFMRRMPHVWDDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 51 ~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~-~~~~~V~ssP~v~~dg~VyvGs~d~~lyalD 129 (161)
.++|.-....|+.++. +...+.-.+||+|...+.. |.. .|.- .+.+... .++. ..=..+|+|...|
T Consensus 3 tvvW~an~~~p~~~~s----~~~~L~l~~dGnLvl~~~~-~~~-iWss~~t~~~~~-~~~~------~~L~~~GNlvl~d 69 (114)
T PF01453_consen 3 TVVWVANRNSPLTSSS----GNYTLILQSDGNLVLYDSN-GSV-IWSSNNTSGRGN-SGCY------LVLQDDGNLVLYD 69 (114)
T ss_dssp -------TTEEEEECE----TTEEEEEETTSEEEEEETT-TEE-EEE--S-TTSS--SSEE------EEEETTSEEEEEE
T ss_pred cccccccccccccccc----ccccceECCCCeEEEEcCC-CCE-EEEecccCCccc-cCeE------EEEeCCCCEEEEe
Confidence 3567666666664321 1222333356788777654 555 6655 3332221 1221 1112478888888
Q ss_pred CCCCcEEEEe
Q 031361 130 AKSGGMICSH 139 (161)
Q Consensus 130 a~TG~~~W~~ 139 (161)
.+|+.+|+-
T Consensus 70 -~~~~~lW~S 78 (114)
T PF01453_consen 70 -SSGNVLWQS 78 (114)
T ss_dssp -TTSEEEEES
T ss_pred -ecceEEEee
Confidence 699999986
No 254
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=54.98 E-value=1e+02 Score=30.37 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=65.1
Q ss_pred CCCCCC-CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCee-cce------------EeeCCCeEEecCCCCEEEEEEC
Q 031361 23 PRASPE-SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY-SSF------------TRNDPDFYVDVGEDWKLYFHRK 88 (161)
Q Consensus 23 ~~~s~~-~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~-ssp------------~~~d~~~~V~~~ddg~Lyald~ 88 (161)
..+++- ..-+|+..+.+=.+|+++. +++.. ..+.. ++. .+.++...+.++.++++-..+.
T Consensus 328 v~~~~~~~~~lv~l~nNtv~~ysl~~-s~~~~-----p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~ 401 (888)
T KOG0306|consen 328 VTPSGGTENTLVLLANNTVEWYSLEN-SGKTS-----PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNR 401 (888)
T ss_pred EEecCCcceeEEEeecCceEEEEecc-CCCCC-----ccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEc
Confidence 344442 3567778888888899999 66654 11111 111 1123334445544556666666
Q ss_pred CCCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 89 GIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 89 ~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
+|++- ...++-+ ++.++-++-.|.-|.+|.+.|.+-..|..++.+
T Consensus 402 ~t~kc-iRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 402 DTLKC-IRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred cCcce-eEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 66666 4455555 566777776677799999999888888777654
No 255
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.87 E-value=1.3e+02 Score=25.44 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=56.7
Q ss_pred CCCEEEEEec---CCeEEEEeCCCCceeEEEecCCC-eecce-EeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccc
Q 031361 29 SGDLALVATL---NGTVHLVDTKRGESRWSFSMGKP-IYSSF-TRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEF 103 (161)
Q Consensus 29 ~~~~V~vgs~---DG~lyAvd~~tG~~~W~f~t~~~-i~ssp-~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~ 103 (161)
.+|.+|.++- ...|+-.|..+|+++|+-+...+ +.+-- +-.++.+|.-.-.+|.-|.+|+.|=+. .-.+.-.+
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~-lg~~~y~G- 131 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE-LGRFSYEG- 131 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh-hcccccCC-
Confidence 4455555542 34678999999999999877621 11110 011223344344555666666654333 11111110
Q ss_pred eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEe
Q 031361 104 MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~ 139 (161)
++=-+.++|..+++++...+++-.|++|=...-+.
T Consensus 132 -eGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 132 -EGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred -cceeeecCCcceEeeCCceEEEecCHHHhhhcceE
Confidence 11122344455777777788888887765544443
No 256
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=54.74 E-value=1.3e+02 Score=27.24 Aligned_cols=99 Identities=18% Similarity=0.148 Sum_probs=56.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCCC---eEEecCCCCE--EEEEECCCCCeecccc--Cc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPD---FYVDVGEDWK--LYFHRKGIGKMKKPSI--DV 100 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~~---~~V~~~ddg~--Lyald~~tG~~~~w~~--~~ 100 (161)
..+.++.|+.||.++-.|. .|+.+=++.- .+||.+..-+..++ .++-++.|.. ||.++...-++.-.+. .=
T Consensus 114 ~~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH 192 (423)
T KOG0313|consen 114 ASKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH 192 (423)
T ss_pred cCceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence 5799999999999999999 5999888753 45676544444333 3666666644 3333332222100011 11
Q ss_pred ccceecceeEeeCCeE-EEEeeCCEEEEEE
Q 031361 101 GEFMRRMPHVWDDGAL-LLGHEKTSVFFVD 129 (161)
Q Consensus 101 ~~~V~ssP~v~~dg~V-yvGs~d~~lyalD 129 (161)
+..|++--+..+ +.. .-||+|+++-.=+
T Consensus 193 k~~V~sVsv~~s-gtr~~SgS~D~~lkiWs 221 (423)
T KOG0313|consen 193 KRSVDSVSVDSS-GTRFCSGSWDTMLKIWS 221 (423)
T ss_pred ccceeEEEecCC-CCeEEeecccceeeecc
Confidence 123444333343 544 4689998875433
No 257
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=54.05 E-value=31 Score=21.38 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=11.4
Q ss_pred CCEEEE--EECCCCcEEEEe
Q 031361 122 KTSVFF--VDAKSGGMICSH 139 (161)
Q Consensus 122 d~~lya--lDa~TG~~~W~~ 139 (161)
++..+- ||+.||+++.++
T Consensus 45 ~~~~~~v~VDa~tG~Il~~~ 64 (64)
T PF03413_consen 45 DGGEYEVYVDAYTGEILSSY 64 (64)
T ss_dssp TTEEEEEEEETTT--EEEEE
T ss_pred CCCEEEEEEECCCCeEEEeC
Confidence 444444 999999998764
No 258
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=53.33 E-value=54 Score=27.85 Aligned_cols=57 Identities=18% Similarity=0.084 Sum_probs=38.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCC---eecceEe--eCCCeEEecCCCCEEEEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP---IYSSFTR--NDPDFYVDVGEDWKLYFH 86 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~---i~ssp~~--~d~~~~V~~~ddg~Lyal 86 (161)
.-+-+++||++|.||-+|...=...=+++..+. |..+-.. .|-.++|-|. ||.+|.+
T Consensus 194 a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~R-dg~iy~i 255 (257)
T PF14779_consen 194 AVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACR-DGKIYTI 255 (257)
T ss_pred CcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeC-CCEEEEE
Confidence 446788999999999999987777777776653 2222222 1234566775 5588876
No 259
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=53.15 E-value=84 Score=22.70 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=36.9
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEE-ecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecc
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSF-SMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f-~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w 96 (161)
+...+.=+.||.|-..|.. |+.+|+- .+.+.-.. ..+..-.++|+|...| .+++. .|
T Consensus 19 ~~~~L~l~~dGnLvl~~~~-~~~iWss~~t~~~~~~-------~~~~~L~~~GNlvl~d-~~~~~-lW 76 (114)
T PF01453_consen 19 GNYTLILQSDGNLVLYDSN-GSVIWSSNNTSGRGNS-------GCYLVLQDDGNLVLYD-SSGNV-LW 76 (114)
T ss_dssp TTEEEEEETTSEEEEEETT-TEEEEE--S-TTSS-S-------SEEEEEETTSEEEEEE-TTSEE-EE
T ss_pred ccccceECCCCeEEEEcCC-CCEEEEecccCCcccc-------CeEEEEeCCCCEEEEe-ecceE-EE
Confidence 4566777889999999986 8889988 45443211 2233444677888888 46666 44
No 260
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=52.92 E-value=1.5e+02 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=19.0
Q ss_pred ceeEeeCCeEEEEee--------------------CCEEEEEECCCCcEE
Q 031361 107 MPHVWDDGALLLGHE--------------------KTSVFFVDAKSGGMI 136 (161)
Q Consensus 107 sP~v~~dg~VyvGs~--------------------d~~lyalDa~TG~~~ 136 (161)
.+.+..||.+|+... .+.++.+|+++++..
T Consensus 128 ~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e 177 (367)
T TIGR02604 128 SLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLR 177 (367)
T ss_pred CceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEE
Confidence 444555688997332 156888888776653
No 261
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=52.64 E-value=1.1e+02 Score=23.79 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=66.2
Q ss_pred CEEEEEec-CCeEEEEeCCCCceeEEEecCCCeecceEe-eCCC-eEEecCCCCEEEEEECCCCCeeccccCcccceecc
Q 031361 31 DLALVATL-NGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPD-FYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 31 ~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~-~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
..+..++. |+.++..|..+++.+..+............ .++. .++.+..|+.++..|..++......+.-..... .
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~ 246 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-V 246 (466)
T ss_pred CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-e
Confidence 35666664 999999999999999998863332222222 2344 444546677777667777766332222221111 1
Q ss_pred eeEeeCC-eEEEEeeCCEEEEEECCCCcE-EEEe
Q 031361 108 PHVWDDG-ALLLGHEKTSVFFVDAKSGGM-ICSH 139 (161)
Q Consensus 108 P~v~~dg-~VyvGs~d~~lyalDa~TG~~-~W~~ 139 (161)
.....++ .+..++.++.++..|..+... ...+
T Consensus 247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 280 (466)
T COG2319 247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280 (466)
T ss_pred EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE
Confidence 1343334 456799999999999887776 4444
No 262
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=52.59 E-value=1.2e+02 Score=24.29 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=61.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCe---------ecce---EeeCCCeEEecCCCCEEEEEEC-----CCC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI---------YSSF---TRNDPDFYVDVGEDWKLYFHRK-----GIG 91 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i---------~ssp---~~~d~~~~V~~~ddg~Lyald~-----~tG 91 (161)
.++.+++|+.++ .+.+|..+|.+..-+..+..- ..++ ...++.+.+ |.++ .-..+|. +.+
T Consensus 147 ~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll-~~~~-~g~fv~~~G~~~r~~ 223 (275)
T PF00780_consen 147 LGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLL-CYDN-IGVFVNKNGEPSRKS 223 (275)
T ss_pred eCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEE-Eecc-eEEEEcCCCCcCccc
Confidence 689999999665 888999999998877544322 0111 122232222 2222 1111222 223
Q ss_pred CeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 92 KMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 92 ~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
.+ .|.......+...|++. +-.+..+-.-+..||+++......+
T Consensus 224 ~i-~W~~~p~~~~~~~pyli-------~~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 224 TI-QWSSAPQSVAYSSPYLI-------AFSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EE-EcCCchhEEEEECCEEE-------EECCCEEEEEECcCCcEEEEEECCC
Confidence 44 66666666666666542 2234569999999999999887543
No 263
>PRK02888 nitrous-oxide reductase; Validated
Probab=52.17 E-value=1.6e+02 Score=28.23 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=52.9
Q ss_pred EecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCC-eEEec---CCCCEEEEEECCCCCeeccccCcccceecceeEe
Q 031361 36 ATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDV---GEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVW 111 (161)
Q Consensus 36 gs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~-~~V~~---~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~ 111 (161)
.-..+.++++|..+-++.|+...++.....-.-.|+. .|+-| ..+..+.-+++.+-.. ...|..+..-. ++.
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfni~~iea---~vk 286 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFNIARIEE---AVK 286 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEchHHHHH---hhh
Confidence 4456889999999999999999887443322222433 45554 2344555555543322 33344332111 122
Q ss_pred eCCeEEEEeeCCEEEEEECCC
Q 031361 112 DDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 112 ~dg~VyvGs~d~~lyalDa~T 132 (161)
+....+++ ++++-.||.++
T Consensus 287 dGK~~~V~--gn~V~VID~~t 305 (635)
T PRK02888 287 AGKFKTIG--GSKVPVVDGRK 305 (635)
T ss_pred CCCEEEEC--CCEEEEEECCc
Confidence 32446663 67899999998
No 264
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.87 E-value=70 Score=29.43 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=44.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCee--cceEeeCCCeEEecCCCCEEEEEECCCCCeeccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY--SSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPS 97 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~--ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~ 97 (161)
.+..++...-|-.+..-|+.||+.+=.|+-+-... +..=..|+..+|-++.|+.+++.|..--....|.
T Consensus 280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~ 350 (519)
T KOG0293|consen 280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE 350 (519)
T ss_pred CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc
Confidence 55566666667777888888888888887662222 2222347777777777788998886433333443
No 265
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=51.63 E-value=46 Score=28.91 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=38.0
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEec------CCCeecceEe-eCCCeEEecCCCCEEEEEECC
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSM------GKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKG 89 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t------~~~i~ssp~~-~d~~~~V~~~ddg~Lyald~~ 89 (161)
|.....|..|+.||.+-..|.+++ ++.+ ..+|..--.- .+++...-|.+||+|+..|+.
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~----~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNV----AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccc----cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 567899999999999999999887 2221 1111110000 123444566788899999886
No 266
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=51.63 E-value=1.7e+02 Score=28.40 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=65.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
-+++.+.||.|-+|+--.. |+.+=+|+--...+-..++-++..|+-|++||.+.-.+. +|...+-.+....+|-+--
T Consensus 150 ~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 150 PENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred CCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence 4668888999999988776 666666665444333344446678899999988887776 5555355555556666644
Q ss_pred eEeeCCeEEEEeeCCEEEEEE
Q 031361 109 HVWDDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalD 129 (161)
....++.|.--++|+++..-+
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred ecCCCCeEEEecCCceEEEee
Confidence 333346566666777776554
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=50.27 E-value=2.3e+02 Score=26.82 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=46.9
Q ss_pred CCCEEEEEecCC-eEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeecc
Q 031361 29 SGDLALVATLNG-TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 29 ~~~~V~vgs~DG-~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w 96 (161)
...-+.+|+.|| .|--+|..+|+..=.-+.-+-|.+--.-.|+...+-+.+..+|+.+|..||.. +.
T Consensus 370 ~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-~~ 437 (668)
T COG4946 370 DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-RL 437 (668)
T ss_pred CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-eE
Confidence 555778899999 89999999998665433333343322223556666666777999999999988 44
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=50.15 E-value=65 Score=28.59 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=33.5
Q ss_pred EEEEECCCCCeeccccCcccceecceeEeeC--CeEEEEeeCC-----EEEEEECCCCcEE
Q 031361 83 LYFHRKGIGKMKKPSIDVGEFMRRMPHVWDD--GALLLGHEKT-----SVFFVDAKSGGMI 136 (161)
Q Consensus 83 Lyald~~tG~~~~w~~~~~~~V~ssP~v~~d--g~VyvGs~d~-----~lyalDa~TG~~~ 136 (161)
.+-+|.++|++ +....+.+.-.-+|+..+. ..+|++-+++ .-|.+|..+|++-
T Consensus 20 v~~ld~~~g~l-~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt 79 (346)
T COG2706 20 VFNLDTKTGEL-SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT 79 (346)
T ss_pred EEEEeCccccc-chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE
Confidence 34456677777 6666666666667765433 2477776663 4577777777764
No 269
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=49.64 E-value=96 Score=26.63 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=15.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCcee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESR 53 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~ 53 (161)
-++++-+-+.-|...-|-...||.+
T Consensus 41 p~~V~~V~~~~G~~T~I~f~~gE~I 65 (292)
T PRK13861 41 PDQVVRLSTAVGATLVVTFGANETV 65 (292)
T ss_pred CCCEEEEEEECCcEEEEEECCCCEE
Confidence 3455556666666666666666666
No 270
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=48.80 E-value=38 Score=28.53 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=42.2
Q ss_pred CCeEEecCCCCEEEEEECC-CCCeeccccCccccee-cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 71 PDFYVDVGEDWKLYFHRKG-IGKMKKPSIDVGEFMR-RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 71 ~~~~V~~~ddg~Lyald~~-tG~~~~w~~~~~~~V~-ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
.+++++..++ .+|.+... -|..-...-...+.+. .-|...++...++|..+|++|+++++=++.+-...
T Consensus 71 ~~~~vG~~dg-~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 71 AKLMVGTSDG-AVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred ceEEeecccc-eEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 4677777644 88888654 2222111112222333 34554444578999999999999999888775443
No 271
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=48.78 E-value=84 Score=28.07 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=62.2
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeC---CCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRND---PDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d---~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
+..|.++=.+|.++++|..||+.+=.|+.-.+..+-..+.+ .+..+-|..||.+...|.++-.++--....++. +
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--~ 117 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS--G 117 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC--C
Confidence 35688999999999999999999999987655443333322 244555556778988888755441211111222 5
Q ss_pred ceeEe-----eCCeEEEEee----CCEEEEEECCCCcE
Q 031361 107 MPHVW-----DDGALLLGHE----KTSVFFVDAKSGGM 135 (161)
Q Consensus 107 sP~v~-----~dg~VyvGs~----d~~lyalDa~TG~~ 135 (161)
.|++. .++.+-.|+. +-.++.-|++.-++
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq 155 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ 155 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccc
Confidence 56652 2233335543 33555566555444
No 272
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=48.38 E-value=88 Score=22.74 Aligned_cols=29 Identities=10% Similarity=0.394 Sum_probs=23.2
Q ss_pred EEEEecCC-eEEEEeCCCCceeEEEecCCC
Q 031361 33 ALVATLNG-TVHLVDTKRGESRWSFSMGKP 61 (161)
Q Consensus 33 V~vgs~DG-~lyAvd~~tG~~~W~f~t~~~ 61 (161)
.|.|..++ ...|+....|++..+|+.++.
T Consensus 11 ly~g~~~~~dfial~L~~G~l~~~~~~G~~ 40 (131)
T PF00054_consen 11 LYLGSKDGKDFIALELRDGRLEFRYNLGSG 40 (131)
T ss_dssp EEEESSTTSSEEEEEEETTEEEEEEESSSE
T ss_pred EECCcCCCCCEEEEEEECCEEEEEEeCCCc
Confidence 45566665 489999999999999998764
No 273
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=47.22 E-value=1.6e+02 Score=28.83 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=53.3
Q ss_pred CCCEEEEEecCCeEEEEeCC---------CCcee---EEEecCCCeecceEe---eCCCeEEecCCCCEEEEEECC----
Q 031361 29 SGDLALVATLNGTVHLVDTK---------RGESR---WSFSMGKPIYSSFTR---NDPDFYVDVGEDWKLYFHRKG---- 89 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~---------tG~~~---W~f~t~~~i~ssp~~---~d~~~~V~~~ddg~Lyald~~---- 89 (161)
..+.+++.|.+|++|.++.. .|.++ .++..+..|.+.... .++..++-....|.+-.++..
T Consensus 545 t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~ 624 (800)
T TIGR01063 545 THDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSN 624 (800)
T ss_pred CCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 46778888899999999762 24444 334444445443332 123334444444555554421
Q ss_pred ---CCCeeccccCcccc-eecceeEeeCCeEEEEeeCCEEEEEECC
Q 031361 90 ---IGKMKKPSIDVGEF-MRRMPHVWDDGALLLGHEKTSVFFVDAK 131 (161)
Q Consensus 90 ---tG~~~~w~~~~~~~-V~ssP~v~~dg~VyvGs~d~~lyalDa~ 131 (161)
.|.. --++.-++. +...++-.+ ..+++-+.+|.+|.+.+.
T Consensus 625 ~~r~G~~-aiklke~D~lv~v~~~~~~-d~lll~Ts~Gr~~r~~v~ 668 (800)
T TIGR01063 625 IRSNGII-AIKLDDGDELISVRLTSGD-DEVMLGSKNGKAVRFPEE 668 (800)
T ss_pred hccCCcc-cccCCCCCEEEEEEEeCCC-CEEEEEECCCcEEEEEhh
Confidence 1221 122222333 333444333 458888888888888753
No 274
>PRK10449 heat-inducible protein; Provisional
Probab=47.10 E-value=85 Score=23.70 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=17.9
Q ss_pred ChhHHHHHHHHHHHhcCCCCCC
Q 031361 1 MRRSLIFLLLLTVILSSLPPTS 22 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~ 22 (161)
|+|.|+++++.+.+..|-....
T Consensus 1 mk~~~~~~~~~~~l~~C~~~~~ 22 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSGK 22 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCCCC
Confidence 8999998888888888876544
No 275
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=46.95 E-value=67 Score=28.34 Aligned_cols=70 Identities=11% Similarity=-0.007 Sum_probs=50.3
Q ss_pred cCCeEEEEeCCCCceeEEEecCCCeecceEee---------CCCeEEecCCCCEEEEEECCCCCeeccccCcccceecce
Q 031361 38 LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---------DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 38 ~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~---------d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
--|.|-.+|. +|+.+=+|..++++-++.-+. .+++.|+-..||++-++|+.+|+. . =.+.+ -...|
T Consensus 220 G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~-~--g~L~~-~~G~p 294 (336)
T TIGR03118 220 GLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ-L--GQLLD-PDNHP 294 (336)
T ss_pred CcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce-e--eeecC-CCCCe
Confidence 3467888887 699999999888877655332 458899988899999999999976 1 11111 34567
Q ss_pred eEee
Q 031361 109 HVWD 112 (161)
Q Consensus 109 ~v~~ 112 (161)
++-+
T Consensus 295 i~i~ 298 (336)
T TIGR03118 295 VKVD 298 (336)
T ss_pred EEec
Confidence 7654
No 276
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=46.37 E-value=1.3e+02 Score=26.21 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=63.8
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEEecCCCeecce------Eee------CCCeEEecCCC-CEEEEEECCCCCeecccc
Q 031361 32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSF------TRN------DPDFYVDVGED-WKLYFHRKGIGKMKKPSI 98 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp------~~~------d~~~~V~~~dd-g~Lyald~~tG~~~~w~~ 98 (161)
++++|-++|++---|..+|..+=+|+...++.+.. ... -+.++.++.++ =..|.++-.+|.+|.-.+
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 45688999999999999997776665544333211 110 11345454443 124556666777643322
Q ss_pred -Ccccc-eecceeEeeCCeEE-EEeeCCEEEEEECCCCcEEEE
Q 031361 99 -DVGEF-MRRMPHVWDDGALL-LGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 99 -~~~~~-V~ssP~v~~dg~Vy-vGs~d~~lyalDa~TG~~~W~ 138 (161)
+++.+ |...- +.-|++|+ ...||+++....-+|+.++-.
T Consensus 247 ~~lknpGv~gvr-IRpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 247 ITLKNPGVSGVR-IRPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred EEecCCCccceE-EccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 33333 33322 33356676 678999999999999987644
No 277
>PF06835 LptC: Lipopolysaccharide-assembly, LptC-related; InterPro: IPR010664 This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [].; PDB: 3MY2_A.
Probab=45.99 E-value=30 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=4.4
Q ss_pred CCeEEEEeCCCCceeEEEecCC
Q 031361 39 NGTVHLVDTKRGESRWSFSMGK 60 (161)
Q Consensus 39 DG~lyAvd~~tG~~~W~f~t~~ 60 (161)
+-++...|. +|++.|++.+..
T Consensus 39 ~~~~~~~~~-~G~~~~~l~A~~ 59 (176)
T PF06835_consen 39 NFTLTQYDE-DGKLQWKLTAER 59 (176)
T ss_dssp ---------------EEEE-SS
T ss_pred eeEEEEECC-CCCEEEEEEEeE
Confidence 445555564 688888887665
No 278
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=45.96 E-value=16 Score=28.71 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=16.3
Q ss_pred ChhHHHHHHHHHHHhcCCC
Q 031361 1 MRRSLIFLLLLTVILSSLP 19 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~ 19 (161)
|||.|+++++.+.+..|..
T Consensus 1 Mrk~l~~~~l~l~LaGCAt 19 (151)
T PRK13883 1 MRKIVLLALLALALGGCAT 19 (151)
T ss_pred ChhHHHHHHHHHHHhcccC
Confidence 9999999998888877873
No 279
>PF14435 SUKH-4: SUKH-4 immunity protein
Probab=44.71 E-value=34 Score=26.28 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=22.7
Q ss_pred CeEEEEeeC-CEEEEEECCCCcEEEEec
Q 031361 114 GALLLGHEK-TSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 114 g~VyvGs~d-~~lyalDa~TG~~~W~~~ 140 (161)
.-+.+|+.. +..+|||.+||++..--.
T Consensus 76 ~~~vlG~~~~~~~i~ld~~tG~V~~~~~ 103 (179)
T PF14435_consen 76 HYIVLGSDGSGGSICLDPATGAVYALDP 103 (179)
T ss_pred ccEEEEEcCCCCeEEEECCCCeEEEecC
Confidence 558899988 999999999999876433
No 280
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=44.29 E-value=2.1e+02 Score=26.47 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=55.1
Q ss_pred EEecCCeEEEEeCCCCceeEEEecCC-CeecceEeeCCCeEE-ecCCCCEEEEEECCCCCeeccccCcccceecceeEee
Q 031361 35 VATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYV-DVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWD 112 (161)
Q Consensus 35 vgs~DG~lyAvd~~tG~~~W~f~t~~-~i~ssp~~~d~~~~V-~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~ 112 (161)
.|+.||.|.-.|.+++...=+|.-.. ||. +..+.+|-+|+ -..||+.+...|.+.-+. .-.+...+.-...-+..|
T Consensus 364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~~~v~s~~fD 441 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVK-AISFSENGYWLATAADDGSVKLWDLRKLKN-FKTIQLDEKKEVNSLSFD 441 (506)
T ss_pred ccCCCceEEEEEcCCccccccCCCCCCcee-EEEeccCceEEEEEecCCeEEEEEehhhcc-cceeeccccccceeEEEc
Confidence 57788888888888888777776433 333 34555665543 333666788888765554 334444443222222222
Q ss_pred CCeEE--EEeeCCEEEEEECCCCcEEEE
Q 031361 113 DGALL--LGHEKTSVFFVDAKSGGMICS 138 (161)
Q Consensus 113 dg~Vy--vGs~d~~lyalDa~TG~~~W~ 138 (161)
+.--| +++.+=.+|-.+.+| .-|+
T Consensus 442 ~SGt~L~~~g~~l~Vy~~~k~~--k~W~ 467 (506)
T KOG0289|consen 442 QSGTYLGIAGSDLQVYICKKKT--KSWT 467 (506)
T ss_pred CCCCeEEeecceeEEEEEeccc--ccce
Confidence 22234 444444555555443 3454
No 281
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=43.73 E-value=58 Score=29.08 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=29.1
Q ss_pred EEEEECCCCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEE
Q 031361 83 LYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 83 Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W 137 (161)
+.++. .+|++..|+....-.+...+...+ ..|| .+|.+||||. +|++.|
T Consensus 175 vl~i~-~~g~l~~w~~~~Wt~l~~~~~~~~-DIi~---~kGkfYAvD~-~G~l~~ 223 (373)
T PLN03215 175 VLGIG-RDGKINYWDGNVLKALKQMGYHFS-DIIV---HKGQTYALDS-IGIVYW 223 (373)
T ss_pred EEEEe-ecCcEeeecCCeeeEccCCCceee-EEEE---ECCEEEEEcC-CCeEEE
Confidence 44444 678887787655545554444443 3333 4677888874 577665
No 282
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=43.38 E-value=59 Score=27.62 Aligned_cols=55 Identities=7% Similarity=0.125 Sum_probs=35.8
Q ss_pred eEEecCCCCEEEEEECCCCCeeccccCcc---cceecceeEe-eCCeEEEEeeCCEEEEEE
Q 031361 73 FYVDVGEDWKLYFHRKGIGKMKKPSIDVG---EFMRRMPHVW-DDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 73 ~~V~~~ddg~Lyald~~tG~~~~w~~~~~---~~V~ssP~v~-~dg~VyvGs~d~~lyalD 129 (161)
.+|+. +.+.+|.+|+..=.+ .-++.+. -.+..+-... -|.++++.++||.+|.|-
T Consensus 198 LViGT-E~~~i~iLd~~af~i-l~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ir 256 (257)
T PF14779_consen 198 LVIGT-ESGEIYILDPQAFTI-LKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTIR 256 (257)
T ss_pred EEEEe-cCCeEEEECchhhee-EEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEEe
Confidence 34554 677999999764333 2222222 2345555554 568999999999999874
No 283
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=43.37 E-value=2.7e+02 Score=25.62 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=50.7
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCe
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
|.+.+.++.++.|-++---|..||+..=+.+...-|++-.--.|+..++..-.|-++..+|+++|++
T Consensus 141 PtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 141 PTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV 207 (472)
T ss_pred ccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE
Confidence 4577888888889999988999999888877444455433333677777666777899999999988
No 284
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=43.28 E-value=1e+02 Score=25.27 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=39.0
Q ss_pred CEEEEEECCCCCeeccccCcccce-eccee----EeeCC-eEEEE------eeCCEEEEEECCCCcEEEEecCCC
Q 031361 81 WKLYFHRKGIGKMKKPSIDVGEFM-RRMPH----VWDDG-ALLLG------HEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 81 g~Lyald~~tG~~~~w~~~~~~~V-~ssP~----v~~dg-~VyvG------s~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
|.+|..|..++.. |.+.+++.= ..+|= +.|+. .|++| |..|.||.++..||+..--+...+
T Consensus 88 GkIYIkn~~~~~~--~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~d 160 (200)
T PF15525_consen 88 GKIYIKNLNNNNW--WSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKD 160 (200)
T ss_pred eeEEEEecCCCce--EEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccc
Confidence 5677777666544 555555432 44564 23322 24567 788899999999999887666543
No 285
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.85 E-value=1.6e+02 Score=28.99 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=55.0
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-e---ecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCccc
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-I---YSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGE 102 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i---~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~ 102 (161)
+.....++-||.||.|-+.|.+.-+-.=+|..... | .=+| .+++.|.-..|.|.|--.|.+.-+.--.++.++
T Consensus 143 ~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp--~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH- 219 (839)
T KOG0269|consen 143 STEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP--GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH- 219 (839)
T ss_pred cCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc--CCCceEEEecCCceEEEeeccCchhHHHHhhcc-
Confidence 56789999999999999999998887777765331 1 1111 123344444555566555554332211122222
Q ss_pred ceecceeEe---eCCeEE--EEeeCCEEEEEECCC
Q 031361 103 FMRRMPHVW---DDGALL--LGHEKTSVFFVDAKS 132 (161)
Q Consensus 103 ~V~ssP~v~---~dg~Vy--vGs~d~~lyalDa~T 132 (161)
..|+.. .-+..| .|++|..+-.=|..+
T Consensus 220 ---~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 220 ---NGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred ---cCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 234331 112233 566776666555443
No 286
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=42.77 E-value=52 Score=26.42 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=31.0
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCC-------------CC--CCCCCEEEEEecCCeEEEEeCCCCc
Q 031361 1 MRRSLIFLLLLTVILSSLPPTSPR-------------AS--PESGDLALVATLNGTVHLVDTKRGE 51 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~-------------~s--~~~~~~V~vgs~DG~lyAvd~~tG~ 51 (161)
||+.|+++ |++.+.+|-...... |+ |+.-..+++-..|+..|.+....+.
T Consensus 1 mk~i~~l~-l~lll~~C~~~~~~~~~~~~~W~~~~~~P~~ypv~V~~~~~~~~~~~~~~~~~~~~~ 65 (216)
T PF11153_consen 1 MKKILLLL-LLLLLTGCSTNPNEPLQPYFEWRFGVAAPKHYPVWVTYAYFVDGDGDWYRFPTGDST 65 (216)
T ss_pred ChHHHHHH-HHHHHHhhcCCCccCCCCCCccEEEEecCCCCEEEEEEEEEEeCCCcEEEEeccccc
Confidence 88888777 444555665333221 11 4556677778888888877765544
No 287
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=42.45 E-value=70 Score=30.69 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS 64 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~s 64 (161)
-+.-+--|+.||+|+--...||+-+|++..++.|.+
T Consensus 411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~ 446 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRS 446 (733)
T ss_pred CcceeeecCCCCcEEEEEeecceEEEEEeecceeEE
Confidence 456667899999999999999999999999987764
No 288
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=42.16 E-value=1.6e+02 Score=24.76 Aligned_cols=90 Identities=14% Similarity=0.051 Sum_probs=49.9
Q ss_pred EEEEeCCCCceeEEEecCCCee-cceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec------ceeEee--
Q 031361 42 VHLVDTKRGESRWSFSMGKPIY-SSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR------MPHVWD-- 112 (161)
Q Consensus 42 lyAvd~~tG~~~W~f~t~~~i~-ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s------sP~v~~-- 112 (161)
+|.+....-.-+|=.++|.+-. ..|. .+. .-+|.++|.+|+++ ..++...+.+.. .+.+..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~------~~~---~pKLv~~Dl~t~~l-i~~~~~p~~~~~~~s~lndl~VD~~~ 72 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPK------QVC---PPKLVAFDLKTNQL-IRRYPFPPDIAPPDSFLNDLVVDVRD 72 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTG------HTS-----EEEEEETTTTCE-EEEEE--CCCS-TCGGEEEEEEECTT
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCC------CCC---CcEEEEEECCCCcE-EEEEECChHHcccccccceEEEEccC
Confidence 4455555556677777765311 1110 001 12788889999987 555655543332 233322
Q ss_pred ----CCeEEEEe-eCCEEEEEECCCCcEEEEecCC
Q 031361 113 ----DGALLLGH-EKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 113 ----dg~VyvGs-~d~~lyalDa~TG~~~W~~~~~ 142 (161)
++.+|+.- ....|..+|.++|+. |++...
T Consensus 73 ~~~~~~~aYItD~~~~glIV~dl~~~~s-~Rv~~~ 106 (287)
T PF03022_consen 73 GNCDDGFAYITDSGGPGLIVYDLATGKS-WRVLHN 106 (287)
T ss_dssp TTS-SEEEEEEETTTCEEEEEETTTTEE-EEEETC
T ss_pred CCCcceEEEEeCCCcCcEEEEEccCCcE-EEEecC
Confidence 14788865 447999999999987 666554
No 289
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.74 E-value=1.2e+02 Score=24.56 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=25.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSF 56 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f 56 (161)
.+..+++-|.+|.+|.-|..+++...+-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~ 48 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPP 48 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCC
Confidence 6788999999999999999999998765
No 290
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.70 E-value=1.6e+02 Score=22.59 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=43.2
Q ss_pred CEEEEEecCCeE-EEEeCCCCceeEEEecCCCeecceEeeCCCe-EEecCC-CCEEEEEECCCCCeeccccCcccceecc
Q 031361 31 DLALVATLNGTV-HLVDTKRGESRWSFSMGKPIYSSFTRNDPDF-YVDVGE-DWKLYFHRKGIGKMKKPSIDVGEFMRRM 107 (161)
Q Consensus 31 ~~V~vgs~DG~l-yAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~-~V~~~d-dg~Lyald~~tG~~~~w~~~~~~~V~ss 107 (161)
|.+=.-+.||.+ |-+....|+.-|..++...-+...++.++.+ .+++.- + + +..++| |.-+.++-|.+-
T Consensus 38 G~~A~i~v~Gk~~r~i~l~Kg~~t~~v~~~~g~~n~vev~g~~IRV~esNcpd-q---i~Vk~G----~i~k~GetIVcl 109 (132)
T COG5341 38 GAVAEISVDGKVIRTIPLTKGNETFDVKENGGFYNKVEVKGNRIRVVESNCPD-Q---ICVKTG----WISKPGETIVCL 109 (132)
T ss_pred CcEEEEEECCEEEEEEEcccCCccEEEEcCCCceEEEEEcCCEEEEEecCCCc-E---EEEEec----eecCCCCEEEEc
Confidence 556666778876 5566667899999998887776666654432 333321 1 1 233444 334566667777
Q ss_pred ee
Q 031361 108 PH 109 (161)
Q Consensus 108 P~ 109 (161)
|.
T Consensus 110 Ph 111 (132)
T COG5341 110 PH 111 (132)
T ss_pred CC
Confidence 75
No 291
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=41.49 E-value=2.9e+02 Score=25.60 Aligned_cols=110 Identities=17% Similarity=0.104 Sum_probs=66.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecC-CCe-ecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPI-YSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~-~~i-~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
-++.++-+|.||..---|..+|+.+=..... +.+ +.+.++. |+.++.-+..||.+-.+|.+++.. .=+|.. .
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~-~a~Fpg----h 388 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN-VAKFPG----H 388 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc-cccCCC----C
Confidence 5778888888998888888899888776653 222 3333433 445555455677887778777665 445543 3
Q ss_pred ccee----EeeCCe-EEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 106 RMPH----VWDDGA-LLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 106 ssP~----v~~dg~-VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
++|+ ..++|- +.+++.|+.+.+-|.+.=+-..+|..++
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 4454 344442 2356677767776665555444444433
No 292
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=40.97 E-value=1.4e+02 Score=22.47 Aligned_cols=58 Identities=10% Similarity=-0.037 Sum_probs=41.0
Q ss_pred EEEEECCCCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 83 LYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 83 Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
+-..|..||+.+--.++..+-++. |.+......|+-..++.++..|.+|++++ ....+
T Consensus 44 ~k~knL~tG~~~e~~~~s~d~~e~-~~ve~~~~qylY~dg~~~~fMd~eTyeq~-~i~~~ 101 (129)
T PRK03999 44 IVAIGIFDGQKRSLVQPVDAKVEV-PIIEKKTGQVLSIMGDVVQLMDLETYETF-EIPIP 101 (129)
T ss_pred EEEEECCCCCEEEEEecCCCceee-eeEEeEEEEEEEecCCEEEEecCCCceEE-EecCC
Confidence 444577888876667777776655 55544355778887889999999999976 55443
No 293
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=40.59 E-value=2.3e+02 Score=25.22 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=64.6
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe---eCCCeEEecCCCCEEEEEECCCCCeeccccCcc-c
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR---NDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG-E 102 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~---~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~-~ 102 (161)
|...|+...+|-|.+|---|..|=++.=.|+.++.+|++.-. ..-.++..+.+|-++.--|.++|.- --.++-+ +
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~ 189 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRD 189 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccC
Confidence 568899999999999999999999999999999988865422 1122333334555555556666654 2222211 1
Q ss_pred ---ceecceeEeeCCeEEEEeeCCEEEEEE
Q 031361 103 ---FMRRMPHVWDDGALLLGHEKTSVFFVD 129 (161)
Q Consensus 103 ---~V~ssP~v~~dg~VyvGs~d~~lyalD 129 (161)
.|+=+|-. |=.++.||.||.+..-|
T Consensus 190 ~vlaV~Wsp~~--e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 190 GVLAVEWSPSS--EWVLATGSADGAIRLWD 217 (397)
T ss_pred ceEEEEeccCc--eeEEEecCCCceEEEEE
Confidence 24446653 24567888887655444
No 294
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=40.40 E-value=45 Score=23.88 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=23.7
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEe
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFS 57 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~ 57 (161)
.....+++-+.+|.|||+|..+++ ++...
T Consensus 79 ~~~~~vvl~~~~G~Vy~yd~~~~~-l~~lA 107 (125)
T PF02393_consen 79 FRDRLVVLVGESGRVYAYDPEDDR-LYRLA 107 (125)
T ss_pred ccceEEEEEeCCCeEEEEEcCCCE-EEEEe
Confidence 567899999999999999998854 56553
No 295
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=39.84 E-value=15 Score=26.49 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=12.2
Q ss_pred hhHHHHHHHH--HHHhcCCCCCC
Q 031361 2 RRSLIFLLLL--TVILSSLPPTS 22 (161)
Q Consensus 2 ~~~~~~~l~~--~~~~~~~~~~~ 22 (161)
+++|+++||+ ++++|+-.+++
T Consensus 4 K~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhH
Confidence 3456666664 34477766653
No 296
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=39.53 E-value=1.8e+02 Score=22.54 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=67.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCc-eeEEEecCC--CeecceE-eeCCC-eEEecCC-CCEEEEEECCC-CCeeccccCcc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGE-SRWSFSMGK--PIYSSFT-RNDPD-FYVDVGE-DWKLYFHRKGI-GKMKKPSIDVG 101 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~-~~W~f~t~~--~i~ssp~-~~d~~-~~V~~~d-dg~Lyald~~t-G~~~~w~~~~~ 101 (161)
.+..+..++.|+.+...|...+. ....+.... .+..-.. ..+.. ....+.+ ++.+...+..+ +.. ...+...
T Consensus 76 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~ 154 (466)
T COG2319 76 DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL-IRTLEGH 154 (466)
T ss_pred CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE-EEEEecC
Confidence 55667778889999999998887 777776643 2332222 22233 3333333 66777777766 444 2223322
Q ss_pred -cceecceeEeeCC-eEEEEee-CCEEEEEECCCCcEEEEecC
Q 031361 102 -EFMRRMPHVWDDG-ALLLGHE-KTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 102 -~~V~ssP~v~~dg-~VyvGs~-d~~lyalDa~TG~~~W~~~~ 141 (161)
+.|. .-....++ .++.++. ++.++..|..+++.+..+..
T Consensus 155 ~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 155 SESVT-SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred cccEE-EEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 3333 22223334 3556664 99999999999888888876
No 297
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.60 E-value=2.7e+02 Score=27.59 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=24.7
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEEecCCC
Q 031361 32 LALVATLNGTVHLVDTKRGESRWSFSMGKP 61 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~ 61 (161)
.+-||-.||.|.-.|..++.+.-+|..-..
T Consensus 79 ~lAVGYaDGsVqif~~~s~~~~~tfngHK~ 108 (888)
T KOG0306|consen 79 LLAVGYADGSVQIFSLESEEILITFNGHKA 108 (888)
T ss_pred eEEEEecCceEEeeccCCCceeeeeccccc
Confidence 447999999999999999999988854443
No 298
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=38.36 E-value=1.7e+02 Score=27.05 Aligned_cols=103 Identities=16% Similarity=0.259 Sum_probs=53.4
Q ss_pred CCEEEEEecCCeEEEEeC-CCC---------ceeEEEecCCCeecc----eEe-eCCCeEEecCCCCEEEEEEC-CCCCe
Q 031361 30 GDLALVATLNGTVHLVDT-KRG---------ESRWSFSMGKPIYSS----FTR-NDPDFYVDVGEDWKLYFHRK-GIGKM 93 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~-~tG---------~~~W~f~t~~~i~ss----p~~-~d~~~~V~~~ddg~Lyald~-~tG~~ 93 (161)
+++..+-+.||.||+.+. ..+ +.+|+++.. |+... .++ +..+..|-+...|++|+..- +-|.+
T Consensus 185 ~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~-p~~v~~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgql 263 (476)
T COG5184 185 WEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFT-PLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQL 263 (476)
T ss_pred CceEEEEccCCcEEEecCccccccccccccccccceeeee-eeecCchheeeeccCCceEEEEecCCcEEEecCCccccc
Confidence 455566677888877765 222 233443321 11111 111 12356666667778886632 23333
Q ss_pred eccccCcccc--eecceeEeeCCeEEEEeeCCEEEEEECCCCcE
Q 031361 94 KKPSIDVGEF--MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 94 ~~w~~~~~~~--V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
.+-.++--+. ....|+... ...|+++-..++.||| ++|++
T Consensus 264 G~~~~e~~~~~~lv~~~f~i~-~i~~vacG~~h~~al~-~~G~i 305 (476)
T COG5184 264 GRPTSERLKLVVLVGDPFAIR-NIKYVACGKDHSLALD-EDGEI 305 (476)
T ss_pred CCchhhhcccccccCChhhhh-hhhhcccCcceEEEEc-CCCeE
Confidence 2222221111 123444443 4567888888999999 77876
No 299
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.14 E-value=81 Score=28.53 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=43.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEE-Ee--cCC--CeecceEeeCCCeEEecCCCCEEEEEECCCCCe
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWS-FS--MGK--PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~-f~--t~~--~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
.+++||+|+.-|.|-++|.++|++.=. |+ +|+ .|+-+|+ ..+..-|+=|..|..+|.+|-++
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~---~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT---HPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCC---CceEEeeccceeEEEeecccchh
Confidence 688999999999999999999999877 43 222 1222221 13454555566888889888554
No 300
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=37.81 E-value=4.4e+02 Score=26.53 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=78.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeecccc----Cccc
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSI----DVGE 102 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~----~~~~ 102 (161)
.+..+..|+.|=.|-+++..++...=+++- .+|+.. .... .+.+..-..-||+++.++..+|.+ .-.+ +-.+
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~-l~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ-LSYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNE 184 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeecccCCceee-eeEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCcccc
Confidence 456888999999999999999998888864 344443 2232 333443334467999999888876 2221 1123
Q ss_pred ceeccee----EeeC-CeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 103 FMRRMPH----VWDD-GALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 103 ~V~ssP~----v~~d-g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
.+.++++ -.-+ |..-+-.-|+.+-.++.++++...+++...+-+
T Consensus 185 ~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence 3334444 2223 666677778899999999999988888776655
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=37.41 E-value=57 Score=17.89 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.3
Q ss_pred CCCEEEEEecCCeEEEEe
Q 031361 29 SGDLALVATLNGTVHLVD 46 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd 46 (161)
.+..+..++.||.|+-.|
T Consensus 22 ~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 22 DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp TSSEEEEEETTSEEEEEE
T ss_pred ccccceeeCCCCEEEEEC
Confidence 478999999999998654
No 302
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=36.49 E-value=81 Score=22.60 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=40.5
Q ss_pred CCCEEEEEec-CCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATL-NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~-DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.+-.+.+--. +|.+||+|..-=.. -++++....... +++.+|.|--.+.-| +.+||+- . ......+..
T Consensus 22 ~g~~Ialf~~~~~~vyAi~n~Cph~-----~~~~Ls~G~i~~~~g~~~V~CPlH~~~f--~L~tG~~-~--~~~~~~l~~ 91 (104)
T PF13806_consen 22 DGRQIALFRVRDGEVYAIDNRCPHS-----QAGPLSDGLIGDGNGEPCVACPLHKWRF--DLRTGEC-L--EDPDVSLRT 91 (104)
T ss_dssp TTEEEEEEEESTTEEEEEESBETTT-----TSSCGCGSEEEECTTEEEEEETTTTEEE--ETTTTEE-S--SECSEBSBE
T ss_pred CCeEEEEEEeCCCCEEEEeccCCcc-----CCcccceeEEccCCCCEEEECCCCCCeE--ECCCcCc-C--CCCCCcEEe
Confidence 3444445555 99999999742110 122222221111 334566654443444 6688865 1 122234555
Q ss_pred ceeEeeCCeEEE
Q 031361 107 MPHVWDDGALLL 118 (161)
Q Consensus 107 sP~v~~dg~Vyv 118 (161)
=|+..+||.|+|
T Consensus 92 ypvrv~~g~V~V 103 (104)
T PF13806_consen 92 YPVRVEDGQVYV 103 (104)
T ss_dssp EEEEECTTEEEE
T ss_pred EEEEEECCEEEE
Confidence 566555677765
No 303
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=36.35 E-value=3.6e+02 Score=25.27 Aligned_cols=14 Identities=43% Similarity=0.339 Sum_probs=9.7
Q ss_pred EEEEECCCCcEEEE
Q 031361 125 VFFVDAKSGGMICS 138 (161)
Q Consensus 125 lyalDa~TG~~~W~ 138 (161)
+-.||+++|+..=+
T Consensus 232 i~~vd~ksg~vens 245 (603)
T COG4880 232 IAGVDLKSGNVENS 245 (603)
T ss_pred EEEEeccCCcccce
Confidence 44588999987543
No 304
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.07 E-value=1.9e+02 Score=26.24 Aligned_cols=45 Identities=29% Similarity=0.204 Sum_probs=30.4
Q ss_pred cccCcccc-eecceeEeeCCeE-EEEeeCCEEEEEECCCCcEEEEec
Q 031361 96 PSIDVGEF-MRRMPHVWDDGAL-LLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 96 w~~~~~~~-V~ssP~v~~dg~V-yvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
|+..+... .-+|=.|++||+. -+|+.||.+-.+++++=+...-++
T Consensus 274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk 320 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK 320 (398)
T ss_pred hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh
Confidence 33333333 5556667777764 589999999999988776665544
No 305
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=35.97 E-value=1.5e+02 Score=28.05 Aligned_cols=116 Identities=11% Similarity=0.050 Sum_probs=78.7
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CC-CeEEecCCCCEEEEEECCCCCeeccccCccccee
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DP-DFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMR 105 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~-~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ 105 (161)
....+.|..-.||+|.--|..+-.++-+|+--..-.++..+. |+ .+.-++.|. .+.+.|.++|+. ....+....|-
T Consensus 519 pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn-tvRcWDlregrq-lqqhdF~SQIf 596 (705)
T KOG0639|consen 519 PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN-TVRCWDLREGRQ-LQQHDFSSQIF 596 (705)
T ss_pred CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc-ceeehhhhhhhh-hhhhhhhhhhe
Confidence 467788888899999999999999999997544444444444 33 344555544 899999999977 55555444444
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+--+--.+.-|-+|=.++++-.+- .+|..+.+....++|.
T Consensus 597 SLg~cP~~dWlavGMens~vevlh-~skp~kyqlhlheScV 636 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGMENSNVEVLH-TSKPEKYQLHLHESCV 636 (705)
T ss_pred ecccCCCccceeeecccCcEEEEe-cCCccceeecccccEE
Confidence 322211134578888888888777 6777777766666553
No 306
>PHA03092 semaphorin-like protein; Provisional
Probab=35.04 E-value=66 Score=24.37 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=50.5
Q ss_pred CceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEEEeeCCE--EEE
Q 031361 50 GESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTS--VFF 127 (161)
Q Consensus 50 G~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~--lya 127 (161)
|-+--+|+|.+.|.++..+ |+.+ |.+-.|.+|.+. +.++.+-...-..++..|--|.|..++..|..+|+ ...
T Consensus 14 ~iewhkfetseeiistyli-ddvl--ytgvngavytfs--nn~lnktglan~nyittsikved~dtlvcgtnngnpkcwk 88 (134)
T PHA03092 14 GIEWHKFETSEEIISTYLI-DDVL--YTGVNGAVYTFS--NNKLNKTGLANTNYITTSIKVEDKDTLVCGTNNGNPKCWK 88 (134)
T ss_pred ceeEeecccHHHHHHHhhh-hhhh--ccccCceEEEec--CCccccccccccceEEEEEEEccCceEEEecCCCCcceEE
Confidence 4333358999999998877 2333 333456888774 34443444444456777776766677888887663 444
Q ss_pred EECCCCcEEEEe
Q 031361 128 VDAKSGGMICSH 139 (161)
Q Consensus 128 lDa~TG~~~W~~ 139 (161)
+|...-.++..|
T Consensus 89 idgsdntIK~sf 100 (134)
T PHA03092 89 IDGSDNTIKRSF 100 (134)
T ss_pred EcCccchhhhhh
Confidence 554444333333
No 307
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=34.89 E-value=42 Score=24.55 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.3
Q ss_pred EEEEEECCCCcEEEEecCCCCCC
Q 031361 124 SVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 124 ~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
.|..+|+++++++|+-.......
T Consensus 106 ~i~i~D~~~~~~vW~g~a~~~~~ 128 (151)
T PF13590_consen 106 VIDIIDAKTNKVVWRGTASGRLS 128 (151)
T ss_pred EEEEEeCCCCCEEEEEEEEeccC
Confidence 57789999999999977655544
No 308
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=34.82 E-value=1.7e+02 Score=27.12 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=73.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCC--Ce------------------EE------------
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP--DF------------------YV------------ 75 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~--~~------------------~V------------ 75 (161)
..+..+..|..|-.|+--|..|++.+=.|+--....++-.+.++ .. ||
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~ 291 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLG 291 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceee
Confidence 35666677888889999999999988776543322222222211 11 11
Q ss_pred -ecCCCCEEEEEECCCCCeecccc--------Cccc-ceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCC
Q 031361 76 -DVGEDWKLYFHRKGIGKMKKPSI--------DVGE-FMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSA 145 (161)
Q Consensus 76 -~~~ddg~Lyald~~tG~~~~w~~--------~~~~-~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~ 145 (161)
....-.++..+...+..++.|+. ..++ .+++.-++.+ .....||.+|.++..+..+-+++-.+......
T Consensus 292 IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 292 IDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred echhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccc
Confidence 11111223333334555556655 2222 4666666765 66889999999999999999999998876655
Q ss_pred CCc
Q 031361 146 STL 148 (161)
Q Consensus 146 ~~~ 148 (161)
.+.
T Consensus 371 ~~~ 373 (479)
T KOG0299|consen 371 IPE 373 (479)
T ss_pred cCC
Confidence 544
No 309
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=34.14 E-value=2.8e+02 Score=23.25 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCeEEecCCCCEEEEEECCCCCeeccc-cCcccceecceeEee-C---CeEEEEeeCCEEEEEECCCCcE
Q 031361 71 PDFYVDVGEDWKLYFHRKGIGKMKKPS-IDVGEFMRRMPHVWD-D---GALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 71 ~~~~V~~~ddg~Lyald~~tG~~~~w~-~~~~~~V~ssP~v~~-d---g~VyvGs~d~~lyalDa~TG~~ 135 (161)
+.+|-- ++.++||.+|+.||....-. -.+...+..+++-.| + +++-+-|.++.=+.++++||..
T Consensus 39 G~LYgl-~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~GqNlR~npdtGav 107 (236)
T PF14339_consen 39 GQLYGL-GSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTGQNLRLNPDTGAV 107 (236)
T ss_pred CCEEEE-eCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCCcEEEECCCCCCc
Confidence 345533 35679999999999872221 223334444444221 0 3587878899999999999993
No 310
>PRK13684 Ycf48-like protein; Provisional
Probab=33.98 E-value=3e+02 Score=23.51 Aligned_cols=106 Identities=11% Similarity=0.124 Sum_probs=53.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecC---CCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMG---KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~---~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
++.+++....|.++.... .|..-|+-... ..+++-....++.+++.. ++|.++.-....|.- |-.....+...+
T Consensus 183 ~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-W~~~~~~~~~~~ 259 (334)
T PRK13684 183 DGKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-WSKPIIPEITNG 259 (334)
T ss_pred CCeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-cccccCCccccc
Confidence 455566666888886532 45667875422 223332223355566654 455665333455544 443343322111
Q ss_pred ----ceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEec
Q 031361 107 ----MPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHE 140 (161)
Q Consensus 107 ----sP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~ 140 (161)
+-++..++.+++...+|.++. ..+|-.-|+..
T Consensus 260 ~~l~~v~~~~~~~~~~~G~~G~v~~--S~d~G~tW~~~ 295 (334)
T PRK13684 260 YGYLDLAYRTPGEIWAGGGNGTLLV--SKDGGKTWEKD 295 (334)
T ss_pred cceeeEEEcCCCCEEEEcCCCeEEE--eCCCCCCCeEC
Confidence 111222456777777777664 24566677664
No 311
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=33.83 E-value=40 Score=18.44 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=18.0
Q ss_pred EEecCCeEEEEeCCCCceeEEE
Q 031361 35 VATLNGTVHLVDTKRGESRWSF 56 (161)
Q Consensus 35 vgs~DG~lyAvd~~tG~~~W~f 56 (161)
.-+.+|..|=+|..|++..|.-
T Consensus 8 ~~~~~g~~yy~n~~t~~s~W~~ 29 (32)
T smart00456 8 RKDPDGRPYYYNHETKETQWEK 29 (32)
T ss_pred EECCCCCEEEEECCCCCEEcCC
Confidence 3455699999999999999964
No 312
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.83 E-value=3.6e+02 Score=24.04 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=70.4
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCC---CeEEecCCCCEEEEEECCCCCeeccc-cCcccc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP---DFYVDVGEDWKLYFHRKGIGKMKKPS-IDVGEF 103 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~---~~~V~~~ddg~Lyald~~tG~~~~w~-~~~~~~ 103 (161)
+..-.|--|+.|-+||-+|..+-++.=.+-.-......-.+..+ ...+-+.+||.+.+.+...-++..|- -..++
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~- 129 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ- 129 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc-
Confidence 35556677899999999999877665443222111111112111 26677788999999998876664441 12222
Q ss_pred eecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCC
Q 031361 104 MRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAST 147 (161)
Q Consensus 104 V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~ 147 (161)
|..--+.-.+....--+.|..|...|.-+|+.....+....+..
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~ 173 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATL 173 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCccee
Confidence 33322221123344445688999999999988776665554443
No 313
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=32.32 E-value=70 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCEEEEEecCCeE--EEEeCCCCceeEEEe
Q 031361 30 GDLALVATLNGTV--HLVDTKRGESRWSFS 57 (161)
Q Consensus 30 ~~~V~vgs~DG~l--yAvd~~tG~~~W~f~ 57 (161)
...|++++.||++ |.+|.++|.+.|..+
T Consensus 312 ~~~v~vas~dG~~y~y~l~~~~gGec~lik 341 (391)
T KOG2110|consen 312 IPRVLVASYDGHLYSYRLPPKEGGECALIK 341 (391)
T ss_pred CCEEEEEEcCCeEEEEEcCCCCCceeEEEE
No 314
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=31.81 E-value=1.3e+02 Score=27.52 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=36.1
Q ss_pred CCeEEEEeCCCCceeEEEecCCC-ee---cceEeeCCCeEEecC--CC--CEEEEEECCCCCe
Q 031361 39 NGTVHLVDTKRGESRWSFSMGKP-IY---SSFTRNDPDFYVDVG--ED--WKLYFHRKGIGKM 93 (161)
Q Consensus 39 DG~lyAvd~~tG~~~W~f~t~~~-i~---ssp~~~d~~~~V~~~--dd--g~Lyald~~tG~~ 93 (161)
.-.+.-+|..+++..|--..... |. ..|...++.+||... ++ -.+|.+|+.|++.
T Consensus 366 ~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt~~g~~~~IY~iDp~TatA 428 (435)
T PF14298_consen 366 AKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTTEDGSDPYIYKIDPATATA 428 (435)
T ss_pred cceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEeecCCCceeEEEEcCccccc
Confidence 44566679999999998443322 22 234444666777654 23 4799999999877
No 315
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=31.46 E-value=1.1e+02 Score=17.68 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=16.4
Q ss_pred CCeEE-EEeeCC------EEEEEECCCCcEE
Q 031361 113 DGALL-LGHEKT------SVFFVDAKSGGMI 136 (161)
Q Consensus 113 dg~Vy-vGs~d~------~lyalDa~TG~~~ 136 (161)
++.|| +|..++ +++..|.++++..
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 41 (47)
T PF01344_consen 11 GNKIYVIGGYDGNNQPTNSVEVYDPETNTWE 41 (47)
T ss_dssp TTEEEEEEEBESTSSBEEEEEEEETTTTEEE
T ss_pred CCEEEEEeeecccCceeeeEEEEeCCCCEEE
Confidence 36676 566555 7888888877643
No 316
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=31.42 E-value=49 Score=24.93 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=13.4
Q ss_pred ChhHHHHHHHHHHHhc
Q 031361 1 MRRSLIFLLLLTVILS 16 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~ 16 (161)
|||.++++++++.++.
T Consensus 1 M~~~~~~~~~~~~~~~ 16 (162)
T PF12276_consen 1 MKRRLLLALALALLAL 16 (162)
T ss_pred CchHHHHHHHHHHHHh
Confidence 8999999888887755
No 317
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=31.41 E-value=1.7e+02 Score=24.94 Aligned_cols=16 Identities=13% Similarity=0.383 Sum_probs=12.1
Q ss_pred eCCEEEEEECCCCcEE
Q 031361 121 EKTSVFFVDAKSGGMI 136 (161)
Q Consensus 121 ~d~~lyalDa~TG~~~ 136 (161)
.||.||..|-.+|++-
T Consensus 315 pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 PDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTSEEEEEE-TTTTEE
T ss_pred CCCeEEEEECCCCeEe
Confidence 4889999988888764
No 318
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=31.03 E-value=2.4e+02 Score=27.12 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=53.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEe--cCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceec
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFS--MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR 106 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~--t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s 106 (161)
.++.+.+||.|| |+-+|..+|+..=.-. -+.+|....+...+...|+..+| +|..++..-..+-|...+......
T Consensus 174 ~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG--v~~~e~~G~~~sn~~~~lp~~~I~ 250 (671)
T COG3292 174 ANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG--VYLQEAEGWRASNWGPMLPSGNIL 250 (671)
T ss_pred ccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc--eEEEchhhccccccCCCCcchhee
Confidence 567888999888 4557887777642211 11344443333345667777544 555555542222232222222222
Q ss_pred ceeEeeCCeEEEEeeCCEEEEEECCC
Q 031361 107 MPHVWDDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 107 sP~v~~dg~VyvGs~d~~lyalDa~T 132 (161)
.=.-+.+|...||+.+|-..+.-++-
T Consensus 251 ll~qD~qG~lWiGTenGl~r~~l~rq 276 (671)
T COG3292 251 LLVQDAQGELWIGTENGLWRTRLPRQ 276 (671)
T ss_pred eeecccCCCEEEeecccceeEecCCC
Confidence 22223347799999988765554433
No 319
>KOG4038 consensus cGMP-phosphodiesterase, delta subunit [Signal transduction mechanisms]
Probab=30.83 E-value=48 Score=25.41 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=22.4
Q ss_pred EEeeCCEEEEEECCCCcEEEEecCCCCCCCc
Q 031361 118 LGHEKTSVFFVDAKSGGMICSHESDNSASTL 148 (161)
Q Consensus 118 vGs~d~~lyalDa~TG~~~W~~~~~~~~~~~ 148 (161)
-|=+=+.|-.-|++|||++|+-.-+-+.|..
T Consensus 13 ~gfklnwmnlrdaetgkilwq~ted~s~p~~ 43 (150)
T KOG4038|consen 13 KGFKLNWMNLRDAETGKILWQETEDFSAPDQ 43 (150)
T ss_pred hccceeeeEeecccccceeeecccccCCCcc
Confidence 3445567888899999999997665555443
No 320
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=30.49 E-value=40 Score=26.29 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=16.7
Q ss_pred ChhHHHHHHHHHHHhcCCC
Q 031361 1 MRRSLIFLLLLTVILSSLP 19 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~ 19 (161)
|||.+++++|.+.+..|..
T Consensus 1 mrk~~~~~~~al~LaGCaT 19 (145)
T PRK13835 1 LRRLLAACILALLLSGCQT 19 (145)
T ss_pred ChhHHHHHHHHHHHhcccc
Confidence 9999999999888888876
No 321
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=30.41 E-value=1.2e+02 Score=26.95 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=31.8
Q ss_pred EEEEECCCCCeeccccCcccceecc-ee---Ee-eCCeEEEEeeCC---EEEEEECCCCcEEEEec
Q 031361 83 LYFHRKGIGKMKKPSIDVGEFMRRM-PH---VW-DDGALLLGHEKT---SVFFVDAKSGGMICSHE 140 (161)
Q Consensus 83 Lyald~~tG~~~~w~~~~~~~V~ss-P~---v~-~dg~VyvGs~d~---~lyalDa~TG~~~W~~~ 140 (161)
+|.+|+.+|++ .+-.....+.. |- +. .+..+++...++ .+|.+|.+||++--...
T Consensus 270 ~f~V~~~~g~L---~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 270 VFSVDPDGGKL---ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEcCCCCEE---EEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 56677788866 22222222222 43 22 224466665555 78999999999875443
No 322
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=30.22 E-value=61 Score=18.06 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=15.5
Q ss_pred CCeEEEEeCCCCceeEE
Q 031361 39 NGTVHLVDTKRGESRWS 55 (161)
Q Consensus 39 DG~lyAvd~~tG~~~W~ 55 (161)
.|..|=+|..||+..|.
T Consensus 13 ~g~~YY~N~~t~~s~W~ 29 (31)
T PF00397_consen 13 SGRPYYYNHETGESQWE 29 (31)
T ss_dssp TSEEEEEETTTTEEESS
T ss_pred CCCEEEEeCCCCCEEeC
Confidence 49999999999999995
No 323
>PF13964 Kelch_6: Kelch motif
Probab=30.01 E-value=1e+02 Score=18.29 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=15.9
Q ss_pred eEeeCCeEEE-EeeC------CEEEEEECCCCc
Q 031361 109 HVWDDGALLL-GHEK------TSVFFVDAKSGG 134 (161)
Q Consensus 109 ~v~~dg~Vyv-Gs~d------~~lyalDa~TG~ 134 (161)
++.+ +.+|+ |..+ ..++..|++|.+
T Consensus 8 v~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 39 (50)
T PF13964_consen 8 VVVG-GKIYVFGGYDNSGKYSNDVERYDPETNT 39 (50)
T ss_pred EEEC-CEEEEECCCCCCCCccccEEEEcCCCCc
Confidence 3444 66764 5443 478888888875
No 324
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=29.44 E-value=42 Score=25.49 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=27.7
Q ss_pred ChhHHHHHHHHHHHhcCC---CCC-CCCCCCCCCCEEEEEe---cCCeEEEEeCCCCceeEE
Q 031361 1 MRRSLIFLLLLTVILSSL---PPT-SPRASPESGDLALVAT---LNGTVHLVDTKRGESRWS 55 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~---~~~-~~~~s~~~~~~V~vgs---~DG~lyAvd~~tG~~~W~ 55 (161)
|||..++.|.+++++-|= +.. .++++-+.+..+...+ ++-.+-+.|-.+-...|-
T Consensus 1 Mrk~~~~~l~~~lLvGCsS~~~i~~~~~q~vvm~~s~l~~~Isae~~~l~~sd~~~~~~s~l 62 (123)
T COG5633 1 MRKLCLLSLALLLLVGCSSHQEILVNDEQSVVMETSVLIAGISAEKPVLSESDGQPSASSVL 62 (123)
T ss_pred CceehHHHHHHHHhhccCCCCCccccccceeeecccceeccccccCCeeeeeccccceeEEE
Confidence 899877555444444443 333 2344445556555443 344455555544333443
No 325
>PF14435 SUKH-4: SUKH-4 immunity protein
Probab=29.39 E-value=89 Score=23.92 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=24.4
Q ss_pred CCCCCEEEEEecC-CeEEEEeCCCCceeE
Q 031361 27 PESGDLALVATLN-GTVHLVDTKRGESRW 54 (161)
Q Consensus 27 ~~~~~~V~vgs~D-G~lyAvd~~tG~~~W 54 (161)
+..+..+.+|+.- |...|||..||++.+
T Consensus 72 ~~~~~~~vlG~~~~~~~i~ld~~tG~V~~ 100 (179)
T PF14435_consen 72 PDAGHYIVLGSDGSGGSICLDPATGAVYA 100 (179)
T ss_pred cccCccEEEEEcCCCCeEEEECCCCeEEE
Confidence 4577888999998 999999999999876
No 326
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=29.33 E-value=48 Score=26.23 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=16.6
Q ss_pred ChhHHHHHHHHHHHhcCCCCC
Q 031361 1 MRRSLIFLLLLTVILSSLPPT 21 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~~~ 21 (161)
||+.+.++|+++.++||-.+.
T Consensus 1 ~~~~~~~~~~~~~~~~c~~~~ 21 (177)
T TIGR03516 1 MKHLIAVILLLLLLLGCKTPE 21 (177)
T ss_pred CceeHHHHHHHHHHhhcCCCC
Confidence 888878888888889998544
No 327
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=29.23 E-value=1.5e+02 Score=29.17 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=42.7
Q ss_pred ceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEE-EeeCCEEE
Q 031361 51 ESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLL-GHEKTSVF 126 (161)
Q Consensus 51 ~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~Vyv-Gs~d~~ly 126 (161)
..+|++....-|+.-.-..|+.-.|-.-++ +||.+|+..|.+ .-+.+.+.-..-.-+.+.||..|. |+.|-.+.
T Consensus 4 ~~~~r~~~~hci~d~afkPDGsqL~lAAg~-rlliyD~ndG~l-lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 4 VLTWRDKAEHCINDIAFKPDGTQLILAAGS-RLLVYDTSDGTL-LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVI 78 (1081)
T ss_pred hhhhhcccccchheeEECCCCceEEEecCC-EEEEEeCCCccc-ccccccccceEEEEEEccCCceeccCCCceeEE
Confidence 457888777766654334466544444334 899999999988 555555543333334444455553 44444333
No 328
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=29.18 E-value=2.5e+02 Score=21.05 Aligned_cols=75 Identities=7% Similarity=0.033 Sum_probs=39.5
Q ss_pred cCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCC-CeeccccCcccceecceeEee-CCe
Q 031361 38 LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIG-KMKKPSIDVGEFMRRMPHVWD-DGA 115 (161)
Q Consensus 38 ~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG-~~~~w~~~~~~~V~ssP~v~~-dg~ 115 (161)
.+|.+||++..==..-+.+..+ .....|.|--.+. .+|.+|| +.+..+ ....+..=|+..+ |+.
T Consensus 47 ~~G~~~A~~~~CpH~g~~L~~~----------~~~~~i~CP~Hga--~Fdl~tgG~~~~gP--~~~~L~~y~v~v~~~G~ 112 (129)
T TIGR02694 47 PDGDIVAFSTLCTHMGCPVSYS----------ADNKTFNCPCHFS--VFDPEKGGQQVWGQ--ATQNLPQIVLRVADNGD 112 (129)
T ss_pred cCCEEEEEeCcCCCCCcccccc----------cCCCEEEcCCCCC--EECCCCCCcEECCC--CCCCCCeeEEEEECCCe
Confidence 5888888887543333322211 1234556643333 3477874 553333 3445666677553 466
Q ss_pred EEEEeeCCEEE
Q 031361 116 LLLGHEKTSVF 126 (161)
Q Consensus 116 VyvGs~d~~ly 126 (161)
||.=+.+|-+|
T Consensus 113 V~~~~~~~~~~ 123 (129)
T TIGR02694 113 IFAEGVDGLIY 123 (129)
T ss_pred EEEEeccceEe
Confidence 76444566555
No 329
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=29.15 E-value=2.4e+02 Score=24.84 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=47.4
Q ss_pred CCCeEEecCCCCEEEEEECCCCCeeccccCcccceeccee---EeeCCeEEEEeeCCEEEEEECCCCcEE-EEecCCCCC
Q 031361 70 DPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPH---VWDDGALLLGHEKTSVFFVDAKSGGMI-CSHESDNSA 145 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~---v~~dg~VyvGs~d~~lyalDa~TG~~~-W~~~~~~~~ 145 (161)
|+.+.......+.+=-||+.||+...-++..+ ++|. +..|+...|-.....+--||.+|++.. |....+...
T Consensus 72 dG~VWft~qg~gaiGhLdP~tGev~~ypLg~G----a~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~ 147 (353)
T COG4257 72 DGAVWFTAQGTGAIGHLDPATGEVETYPLGSG----ASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHAD 147 (353)
T ss_pred CCceEEecCccccceecCCCCCceEEEecCCC----CCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCC
Confidence 44333333334456667999999866666554 4554 223455555444447888999998875 666666666
Q ss_pred CCcCCC
Q 031361 146 STLGSG 151 (161)
Q Consensus 146 ~~~~~~ 151 (161)
-|+.+.
T Consensus 148 ~nlet~ 153 (353)
T COG4257 148 ANLETA 153 (353)
T ss_pred Ccccce
Confidence 666553
No 330
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=28.87 E-value=3.7e+02 Score=25.02 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=37.1
Q ss_pred CCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCC--E--EEEEECCCCCeeccccCcccceecceeEeeC
Q 031361 39 NGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDW--K--LYFHRKGIGKMKKPSIDVGEFMRRMPHVWDD 113 (161)
Q Consensus 39 DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg--~--Lyald~~tG~~~~w~~~~~~~V~ssP~v~~d 113 (161)
-|.|..+|..+|+++=+=.. ..|.+-.... ++++.+-++.+| . |..+|+.|=++.++ ...+.-..||++.++
T Consensus 374 ls~LvllD~~tg~~l~~S~~-~~Ir~r~~~~~~~~~vaI~g~~G~~~ikLvlid~~tLev~ke--s~~~i~~~S~l~~~~ 450 (489)
T PF05262_consen 374 LSELVLLDSDTGDTLKRSPV-NGIRGRTFYEREDDLVAIAGCSGNAAIKLVLIDPETLEVKKE--SEDEISWQSSLIVDG 450 (489)
T ss_pred ceeEEEEeCCCCceeccccc-ceeccceeEEcCCCEEEEeccCCchheEEEecCcccceeeee--ccccccccCceEEcC
Confidence 46788899998887753211 1233322211 333333222222 2 44445666555333 223456667777664
Q ss_pred CeEE
Q 031361 114 GALL 117 (161)
Q Consensus 114 g~Vy 117 (161)
+.+|
T Consensus 451 ~~iy 454 (489)
T PF05262_consen 451 QMIY 454 (489)
T ss_pred CeEE
Confidence 4344
No 331
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=28.12 E-value=2.6e+02 Score=27.12 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=57.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCceeEEEecCCC-eecc----eEee------CCCeEEecCCCCEEEEEECCCCCeecc
Q 031361 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-IYSS----FTRN------DPDFYVDVGEDWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~-i~ss----p~~~------d~~~~V~~~ddg~Lyald~~tG~~~~w 96 (161)
..+-++|++.+||.+...|.+.-+-+ +.+. ++.. .++- ..-.+|-...|......|.+++++...
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~ 137 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFR----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG 137 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcc----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc
Confidence 47889999999999999998754433 2221 1211 1111 223466666666777778777766444
Q ss_pred c--cCcccceecceeEeeCCeEE-EEeeCCEEEEEEC
Q 031361 97 S--IDVGEFMRRMPHVWDDGALL-LGHEKTSVFFVDA 130 (161)
Q Consensus 97 ~--~~~~~~V~ssP~v~~dg~Vy-vGs~d~~lyalDa 130 (161)
. +.-..-|.+.=+.-.|..|| .|..|+.+-.-|.
T Consensus 138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred eeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 2 22222333333333345566 5888888776663
No 332
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=28.05 E-value=38 Score=28.04 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=14.8
Q ss_pred EEEEEECCCCcEEEEecC
Q 031361 124 SVFFVDAKSGGMICSHES 141 (161)
Q Consensus 124 ~lyalDa~TG~~~W~~~~ 141 (161)
..-.+|.+||+.+|+.+.
T Consensus 133 ~~~Lvd~rTG~~LW~gsa 150 (215)
T PF05643_consen 133 EAKLVDLRTGKVLWSGSA 150 (215)
T ss_pred EEEEEECCCCCEEeccce
Confidence 345679999999999875
No 333
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=27.82 E-value=4.4e+02 Score=23.51 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=21.2
Q ss_pred eeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecC
Q 031361 108 PHVWDDGALLLGHEKTSVFFVDAKSGGMICSHES 141 (161)
Q Consensus 108 P~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~ 141 (161)
+...+|+.+++...+|.++.-. +|-.-|+...
T Consensus 333 v~~~~d~~~~a~G~~G~v~~s~--D~G~tW~~~~ 364 (398)
T PLN00033 333 VGYRSKKEAWAAGGSGILLRST--DGGKSWKRDK 364 (398)
T ss_pred EEEcCCCcEEEEECCCcEEEeC--CCCcceeEcc
Confidence 3444557788877788777653 5666777754
No 334
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=27.80 E-value=2.3e+02 Score=26.07 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=76.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEec--CC------------CeecceEee--------------------CCCeE
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM--GK------------PIYSSFTRN--------------------DPDFY 74 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t--~~------------~i~ssp~~~--------------------d~~~~ 74 (161)
.+-.++.+|.|++++--|-.+++++=++.- +. .|.++.... .+|+.
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~ 309 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIV 309 (459)
T ss_pred CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceE
Confidence 456778888888888777777777766532 11 011111000 11221
Q ss_pred E------ecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCC
Q 031361 75 V------DVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 75 V------~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~ 143 (161)
+ -+..|.++.++|.+++.. .....+++.|.+--+..+...|..-+.|.++-.+|..|-+++-.|...+
T Consensus 310 ~~~~~~~SgH~DkkvRfwD~Rs~~~-~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g 383 (459)
T KOG0288|consen 310 CSISDVISGHFDKKVRFWDIRSADK-TRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG 383 (459)
T ss_pred ecceeeeecccccceEEEeccCCce-eeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc
Confidence 1 222466888889888888 7788888888777666653457777999999999999999998887654
No 335
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=26.99 E-value=3.2e+02 Score=21.56 Aligned_cols=55 Identities=11% Similarity=-0.017 Sum_probs=33.1
Q ss_pred EEecCCCCEEEEEECCCCCeeccccCcccceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEE
Q 031361 74 YVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 74 ~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W 137 (161)
.+.|--.+.- +| .+|+.+.. .....+..=|+..+|+.||+.-+ +--|-+||+.=|
T Consensus 122 ~~~CP~Hgs~--Fd-~tG~~~~g--Pa~~~L~~y~v~v~~g~v~v~~~----~e~~~~~~~~~~ 176 (178)
T PRK13474 122 KFQCPCHGSQ--YD-ATGKVVRG--PAPLSLALVHVTVEDDKVLFSPW----TETDFRTGEKPW 176 (178)
T ss_pred EEEecCcCCE--EC-CCCCCccC--CCCCCCCeEeEEEECCEEEEEEe----eecCCcCCCCCC
Confidence 4445433333 36 68877443 33445667777666788998765 455677776544
No 336
>PRK05560 DNA gyrase subunit A; Validated
Probab=26.89 E-value=6.1e+02 Score=24.85 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCCCEEEEEecCCeEEEEeCCC---------CceeEEEecCCCeecceEeeCCC-eEEecCCCCEEEEEECC--------
Q 031361 28 ESGDLALVATLNGTVHLVDTKR---------GESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKG-------- 89 (161)
Q Consensus 28 ~~~~~V~vgs~DG~lyAvd~~t---------G~~~W~f~t~~~i~ssp~~~d~~-~~V~~~ddg~Lyald~~-------- 89 (161)
..++.+++-|.+|.+..++..+ |...=+++.+..+.........+ +.+.. +.|++|.+.+.
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfT-s~Grv~~l~v~~iP~~~~~ 574 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFT-NRGRVYRLKVYEIPEASRT 574 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEe-cCCeEEEEEhhhCcCCCcC
Confidence 4678999999999999986543 22222333344443333333333 44443 56799998752
Q ss_pred -CCCee--ccccCcccceecceeEe---eCCeEEEEeeCCEEEEEEC
Q 031361 90 -IGKMK--KPSIDVGEFMRRMPHVW---DDGALLLGHEKTSVFFVDA 130 (161)
Q Consensus 90 -tG~~~--~w~~~~~~~V~ssP~v~---~dg~VyvGs~d~~lyalDa 130 (161)
.|... ..++.-++.|.+.=.+. ++..+++.|++|.+..++.
T Consensus 575 ~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l 621 (805)
T PRK05560 575 ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSL 621 (805)
T ss_pred CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEh
Confidence 22220 12334444443332222 3466888999998887764
No 337
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=26.84 E-value=45 Score=26.57 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=16.6
Q ss_pred ChhHHHHHHHHHHHhcCCCCC
Q 031361 1 MRRSLIFLLLLTVILSSLPPT 21 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~~~ 21 (161)
|||+++++++.+.+++....|
T Consensus 1 m~k~~~a~~~~l~~~s~~a~A 21 (180)
T PF07437_consen 1 MKKFLLASAAALLLVSASANA 21 (180)
T ss_pred CchHHHHHHHHHHHHhhhhhe
Confidence 999999988877777666554
No 338
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=26.80 E-value=4.9e+02 Score=23.71 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCC--CeeccccC
Q 031361 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIG--KMKKPSID 99 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG--~~~~w~~~ 99 (161)
..+.+|-+|-|.+|.--|..+|+.+=+..++.++..-......++++-+..|-++.-+|+++| ++++..+.
T Consensus 270 d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 270 DATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred CCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee
Confidence 478999999999999999999999999988887664322223455655555667777788654 44444443
No 339
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=26.73 E-value=1.6e+02 Score=29.91 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=39.6
Q ss_pred CCCeEEecCCCCEEEEEECC-CCCeeccccCcc-cceecce-----eEeeCCeEEEEeeCC--EEEEEEC
Q 031361 70 DPDFYVDVGEDWKLYFHRKG-IGKMKKPSIDVG-EFMRRMP-----HVWDDGALLLGHEKT--SVFFVDA 130 (161)
Q Consensus 70 d~~~~V~~~ddg~Lyald~~-tG~~~~w~~~~~-~~V~ssP-----~v~~dg~VyvGs~d~--~lyalDa 130 (161)
++..|+-+..+|.||.+-.. +|+- .|.+.++ +++..+| ..-++|.+|+||+-| .|..|.-
T Consensus 268 ~~~~yLl~d~~G~Lf~l~l~~~~e~-~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~ 336 (1096)
T KOG1897|consen 268 QGSRYLLGDEDGMLFKLLLSHTGET-VSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNT 336 (1096)
T ss_pred CccEEEEecCCCcEEEEEeeccccc-ccceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccc
Confidence 44668877788899998776 8877 7774333 2222333 345679999999654 5666653
No 340
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=26.65 E-value=50 Score=25.84 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHHHHhcCCCCC
Q 031361 1 MRRSLIFLLLLTVILSSLPPT 21 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~~~ 21 (161)
||++++++|+.+.+.||=.++
T Consensus 4 ~~~~~~~ll~~~ll~sC~~~~ 24 (156)
T TIGR03511 4 VRNSISFFLGACVLVSCTENT 24 (156)
T ss_pred HHhHHHHHHHHHHhcccCCCC
Confidence 788887777777888887666
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.54 E-value=1.5e+02 Score=29.31 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=24.4
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCceeEEEec
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSM 58 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t 58 (161)
.+.+....+||.+|.||.++. .|++.=.|.+
T Consensus 46 av~~~~~~~GtH~g~v~~~~~-~~~~~~~~~~ 76 (846)
T KOG2066|consen 46 AVHDKFFALGTHRGAVYLTTC-QGNPKTNFDH 76 (846)
T ss_pred HhhcceeeeccccceEEEEec-CCcccccccc
Confidence 368889999999999999998 4777434443
No 342
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=26.08 E-value=55 Score=18.09 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=11.0
Q ss_pred ChhHHHHHHHHHHHhcC
Q 031361 1 MRRSLIFLLLLTVILSS 17 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~ 17 (161)
|||.|+.++.+.++.-|
T Consensus 7 mKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 38888777766655433
No 343
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=25.92 E-value=3.2e+02 Score=21.30 Aligned_cols=102 Identities=20% Similarity=0.181 Sum_probs=57.1
Q ss_pred EEEEecCCeEEEEeCCCCceeEEEecCCCeecceEe-eCCCeEEecC-C--CCEEEEEECCCCCeeccccCcccceecce
Q 031361 33 ALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVG-E--DWKLYFHRKGIGKMKKPSIDVGEFMRRMP 108 (161)
Q Consensus 33 V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~-~d~~~~V~~~-d--dg~Lyald~~tG~~~~w~~~~~~~V~ssP 108 (161)
|+.|..+..+.-.|.+ ++++.+|..... . +... .++...+-++ + .|.|..+|..+.+. .-.++.. -.+.-
T Consensus 76 vi~g~~~~~v~lyd~~-~~~i~~~~~~~~-n-~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~~~~--~~t~~ 149 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVK-GKKIFSFGTQPR-N-TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-ISTFEHS--DATDV 149 (194)
T ss_pred EEEccCCcccEEEcCc-ccEeEeecCCCc-e-EEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-eeccccC--cEEEE
Confidence 3446678888888885 999999975432 1 1112 2445444332 1 35788888887666 2222222 11111
Q ss_pred eEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCC
Q 031361 109 HVWDDGALLLGHEKTSVFFVDAKSGGMICSHESD 142 (161)
Q Consensus 109 ~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~ 142 (161)
.-+-||+-++.+. +..-...++|-.+|.|...
T Consensus 150 ~WsPdGr~~~ta~--t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 150 EWSPDGRYLATAT--TSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEcCCCCEEEEEE--eccceeccccEEEEEecCe
Confidence 2233465444332 2234567799999998754
No 344
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=25.83 E-value=5.7e+02 Score=24.10 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCce--eEEEec
Q 031361 27 PESGDLALVATLNGTVHLVDTKRGES--RWSFSM 58 (161)
Q Consensus 27 ~~~~~~V~vgs~DG~lyAvd~~tG~~--~W~f~t 58 (161)
|.+..++..|+.+|.|-.-|.+.+.- .|...+
T Consensus 252 p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~ 285 (555)
T KOG1587|consen 252 PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA 285 (555)
T ss_pred cCCcceEEeeccCceEEEEEccCCCCCCCccccc
Confidence 56899999999999999999988877 676654
No 345
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=25.83 E-value=4.1e+02 Score=23.09 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.9
Q ss_pred cCCeEEEEeCCCCceeE
Q 031361 38 LNGTVHLVDTKRGESRW 54 (161)
Q Consensus 38 ~DG~lyAvd~~tG~~~W 54 (161)
-+|+||++|-+||-+-+
T Consensus 62 FngkLys~DDrTGiVye 78 (291)
T PF06079_consen 62 FNGKLYSFDDRTGIVYE 78 (291)
T ss_dssp ETTEEEEEETTT-EEEE
T ss_pred ECCEEeeeeCCCceEEE
Confidence 38999999999998766
No 346
>PF11920 DUF3438: Protein of unknown function (DUF3438); InterPro: IPR021844 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=25.82 E-value=2.9e+02 Score=23.87 Aligned_cols=17 Identities=41% Similarity=0.741 Sum_probs=11.6
Q ss_pred ChhHHHHHHHHHHHhcC
Q 031361 1 MRRSLIFLLLLTVILSS 17 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~ 17 (161)
|||++.++++++.+.+.
T Consensus 1 mk~~~~~~~l~~~~~~~ 17 (288)
T PF11920_consen 1 MKKLLLLLLLLLLLASA 17 (288)
T ss_pred ChhhHHHHHHHHHhccc
Confidence 88888777766655443
No 347
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=25.44 E-value=3.2e+02 Score=25.95 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=42.6
Q ss_pred CCCCCCCEEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEee-CCCeEEecCCCCEEEEEECCCCCe
Q 031361 25 ASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 25 ~s~~~~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~-d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
=||+.+-++.--..|-+||-+|..+-+..=++....|+.+- ++. ++...+-+...|+||++|.+.-+.
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstv-af~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTV-AFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred ecCCccceEEEecccceEEEeecccccccceeeecCCccee-eecCCceEEEeecCCceEEEEecccCCC
Confidence 34667777777788999999999866655555445555432 222 333333333456999999765433
No 348
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=24.78 E-value=1.2e+02 Score=16.05 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.1
Q ss_pred EEecCCeEEEEeCCCCceeEEE
Q 031361 35 VATLNGTVHLVDTKRGESRWSF 56 (161)
Q Consensus 35 vgs~DG~lyAvd~~tG~~~W~f 56 (161)
.-+.+|..|=+|..|++..|..
T Consensus 7 ~~~~~g~~yy~n~~t~~s~W~~ 28 (31)
T cd00201 7 RWDPDGRVYYYNHNTKETQWED 28 (31)
T ss_pred EECCCCCEEEEECCCCCEeCCC
Confidence 3455699999999999999964
No 349
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=24.10 E-value=3.6e+02 Score=23.87 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=36.5
Q ss_pred EECCCCCeeccccCcccceecceeEeeCCeEEE-EeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 86 HRKGIGKMKKPSIDVGEFMRRMPHVWDDGALLL-GHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 86 ld~~tG~~~~w~~~~~~~V~ssP~v~~dg~Vyv-Gs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
+|..++++..-.+. .-.||-..+ |.+++ =+..+.++.+|++||+..-...-.+-..
T Consensus 190 idv~s~evl~~GLs----mPhSPRWhd-grLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r 246 (335)
T TIGR03032 190 IDIPSGEVVASGLS----MPHSPRWYQ-GKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR 246 (335)
T ss_pred EEeCCCCEEEcCcc----CCcCCcEeC-CeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc
Confidence 35566655222222 345888886 77775 5688999999999998776655544333
No 350
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.01 E-value=5.6e+02 Score=26.23 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=73.7
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEec-CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcc---ccee
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVG---EFMR 105 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~---~~V~ 105 (161)
.--++++=..|.|.+-|.+=|..+=+|.- ++|+.+----....+||-++||-.+-..+-++-+. -|++- ++|+
T Consensus 21 rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc---lftL~GHlDYVR 97 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC---LFTLLGHLDYVR 97 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee---hhhhccccceeE
Confidence 34678888999999999999999999964 67877644344568999988885443322222211 22221 4566
Q ss_pred cceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCC
Q 031361 106 RMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNS 144 (161)
Q Consensus 106 ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~ 144 (161)
+.-+..+-.=+.-.|.|.++..=|.-+++.+-.....+|
T Consensus 98 t~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH 136 (1202)
T KOG0292|consen 98 TVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH 136 (1202)
T ss_pred EeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence 665554434466678888888777777776666555444
No 351
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=23.80 E-value=2.2e+02 Score=24.30 Aligned_cols=59 Identities=20% Similarity=0.072 Sum_probs=27.9
Q ss_pred CCCEEEEEecC-CeEEEEeCCCCceeEEEec-CCCeecceEeeCCCeEEecCCCCEEEEEECCCCCe
Q 031361 29 SGDLALVATLN-GTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 29 ~~~~V~vgs~D-G~lyAvd~~tG~~~W~f~t-~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
..+..+++..- +.|++++.+++...++.+. -......+ .=|.-..||+||..+-.+|++
T Consensus 269 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~------~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 269 YRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRP------RDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-E------EEEEEETTSEEEEEE-TTTTE
T ss_pred ccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCc------eEEEEcCCCeEEEEECCCCeE
Confidence 45555555553 3666666554443333221 00111000 112223467899888788877
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=23.65 E-value=1e+02 Score=14.70 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=12.4
Q ss_pred CCEEEEEecCCeEEEE
Q 031361 30 GDLALVATLNGTVHLV 45 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAv 45 (161)
+..++.++.||.++..
T Consensus 24 ~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 24 GKYLASASDDGTIKLW 39 (40)
T ss_pred CCEEEEecCCCeEEEc
Confidence 4688889999988654
No 353
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=23.28 E-value=2.6e+02 Score=19.39 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=36.1
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCCeeccccCcccceecceeEe
Q 031361 32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHVW 111 (161)
Q Consensus 32 ~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v~ 111 (161)
.+++-..||.+||++..==..-..+..+. .+++ .|.|--.| +.+|.++|.. .- .....+..=|+..
T Consensus 25 ~~~~~~~~g~~~A~~n~CpH~g~~L~~g~--------~~g~-~i~CP~Hg--~~Fdl~~G~~-~~--~~~~~L~~~~v~v 90 (108)
T cd03474 25 VLLVAPEGGEFRAFQGICPHQEIPLAEGG--------FDGG-VLTCRAHL--WQFDADTGEG-LN--PRDCRLARYPVKV 90 (108)
T ss_pred EEEEEccCCeEEEEcCcCCCCCCCcccCc--------ccCC-EEEeCCcC--CEEECCCccc-cC--CCCCccceEeEEE
Confidence 55666778888888764322222221111 1222 33443222 3347777766 21 1223344555544
Q ss_pred eCCeEEEEe
Q 031361 112 DDGALLLGH 120 (161)
Q Consensus 112 ~dg~VyvGs 120 (161)
++|.||+.-
T Consensus 91 ~~g~v~v~~ 99 (108)
T cd03474 91 EGGDILVDT 99 (108)
T ss_pred ECCEEEEeC
Confidence 456666543
No 354
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=22.96 E-value=4e+02 Score=24.39 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=37.3
Q ss_pred CeEEEEeeCCEEEEEECCCCcEEEEecCCCCCCCcCCCCCcee
Q 031361 114 GALLLGHEKTSVFFVDAKSGGMICSHESDNSASTLGSGLPMKK 156 (161)
Q Consensus 114 g~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~~~~~~~~~~~ 156 (161)
..+.+||-|.+++-.|...|.+.-..+..++...+.+-=|..+
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 4577899999999999999999999999999888877666554
No 355
>PRK11372 lysozyme inhibitor; Provisional
Probab=22.80 E-value=3.1e+02 Score=20.01 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEecCCeEEE
Q 031361 1 MRRSLIFLLLLTVILSSLPPTSPRASPESGDLALVATLNGTVHL 44 (161)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~V~vgs~DG~lyA 44 (161)
|++.|+++++++ +.-|-......+.+..+-+-|.... ..+.+
T Consensus 3 mk~ll~~~~~~l-L~gCs~~~~~~~~~~~~~~~Y~C~~-~~~~v 44 (109)
T PRK11372 3 MKKLLIICLPVL-LTGCSAYNQFVERMQTDTLEYQCDE-KPLTV 44 (109)
T ss_pred hHHHHHHHHHHH-HHHhcCCccccCCCCCCcEEEEeCC-cEEEE
Confidence 666665554444 4334322222333334456666643 55554
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=22.74 E-value=4.5e+02 Score=21.80 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCEEEEEec----------CCeEEEEeCCCC-------ceeEEEecCCCeecceEeeCCCeEEecCCCCEEEEEECCCCC
Q 031361 30 GDLALVATL----------NGTVHLVDTKRG-------ESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGK 92 (161)
Q Consensus 30 ~~~V~vgs~----------DG~lyAvd~~tG-------~~~W~f~t~~~i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~ 92 (161)
...+.|||. .|.|+-++..+. +.+.+.+..+++++-... ++.+.+.. +..++.++....+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcc
Confidence 455666664 299999999885 333444566776654444 33333333 3467666655554
No 357
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=22.74 E-value=26 Score=28.93 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=4.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCEE
Q 031361 6 IFLLLLTVILSSLPPTSPRASPESGDLA 33 (161)
Q Consensus 6 ~~~l~~~~~~~~~~~~~~~~s~~~~~~V 33 (161)
|++|+++.+.||---++++|++...|.+
T Consensus 1 ~~~~~~l~~~SC~~DNYD~P~s~l~G~i 28 (222)
T PF12866_consen 1 ILLLLLLLFTSCEKDNYDEPDSTLTGRI 28 (222)
T ss_dssp ---------------------EEEEEEE
T ss_pred CHHHHHHHHhccCccCCcCCCceEEEEE
Confidence 5678888889999888889987555554
No 358
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=22.48 E-value=1.2e+02 Score=18.02 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=11.3
Q ss_pred CEEEEEECCCCcEEEE
Q 031361 123 TSVFFVDAKSGGMICS 138 (161)
Q Consensus 123 ~~lyalDa~TG~~~W~ 138 (161)
..+|++|..++ .|+
T Consensus 19 nd~~~~~~~~~--~W~ 32 (49)
T PF13415_consen 19 NDVWVFDLDTN--TWT 32 (49)
T ss_pred cCEEEEECCCC--EEE
Confidence 48999999988 455
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.48 E-value=2.1e+02 Score=25.31 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred CeEEEEeCCCCceeEEEecCCCee--cce--Ee-eCCCeEEecC-----CC-CEEEEEECCCCCeeccccCcc-------
Q 031361 40 GTVHLVDTKRGESRWSFSMGKPIY--SSF--TR-NDPDFYVDVG-----ED-WKLYFHRKGIGKMKKPSIDVG------- 101 (161)
Q Consensus 40 G~lyAvd~~tG~~~W~f~t~~~i~--ssp--~~-~d~~~~V~~~-----dd-g~Lyald~~tG~~~~w~~~~~------- 101 (161)
=.+-.+|+.||+++=|........ |.- .+ .|+++..+|. +| --|.+.-.+ |+. .-.+.+.
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~-g~~-l~~~~~pee~~~~~ 278 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK-GEP-LEFLDLPEEQTAAF 278 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccC-CCc-CcccCCCHHHHHHH
Confidence 345678888888887765543222 111 11 1445544442 21 113333223 222 2223332
Q ss_pred -cceecceeEeeCCeEEEEee-CCEEEEEECCCCcEEEEecCCC
Q 031361 102 -EFMRRMPHVWDDGALLLGHE-KTSVFFVDAKSGGMICSHESDN 143 (161)
Q Consensus 102 -~~V~ssP~v~~dg~VyvGs~-d~~lyalDa~TG~~~W~~~~~~ 143 (161)
++|-+--+-.+++.|-.-|- .+....+|++||.++-.-...+
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d 322 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD 322 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc
Confidence 34555444455677777774 4566778999999987655444
No 360
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=22.19 E-value=3.7e+02 Score=20.63 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=45.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeEEEecCCC--eecceE----------e-eCCCeEEecCCCCEEEEEECCCCCe
Q 031361 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKP--IYSSFT----------R-NDPDFYVDVGEDWKLYFHRKGIGKM 93 (161)
Q Consensus 30 ~~~V~vgs~DG~lyAvd~~tG~~~W~f~t~~~--i~ssp~----------~-~d~~~~V~~~ddg~Lyald~~tG~~ 93 (161)
-++.+.+..||.+-.+|..+|+++=+++.++. +...-. + .+..+-+.-.+||+|--.|+.||+.
T Consensus 41 r~l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~ 117 (135)
T TIGR03054 41 LWLVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWS 117 (135)
T ss_pred EEEEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcE
Confidence 47888999999999999999999999977642 221110 0 0123334444778999899999865
No 361
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=22.05 E-value=8e+02 Score=25.92 Aligned_cols=117 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCeEEEEeCCC-------CceeEEEecCCC-----eecceEeeCCCeEEecCCCCEEEEEECCCCCeecc
Q 031361 29 SGDLALVATLNGTVHLVDTKR-------GESRWSFSMGKP-----IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKKP 96 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~t-------G~~~W~f~t~~~-----i~ssp~~~d~~~~V~~~ddg~Lyald~~tG~~~~w 96 (161)
.++.+-+++.||.|+-++..- +...-.-+..++ +++.-+...-.+.+|..+-+.+..+|..+-.. .|
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w 1187 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-AW 1187 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-HH
Q ss_pred ccCcc---cceecceeEeeCCeEEEEeeCCEEEEEECCCCcEEEEecCCCCCC
Q 031361 97 SIDVG---EFMRRMPHVWDDGALLLGHEKTSVFFVDAKSGGMICSHESDNSAS 146 (161)
Q Consensus 97 ~~~~~---~~V~ssP~v~~dg~VyvGs~d~~lyalDa~TG~~~W~~~~~~~~~ 146 (161)
..+.. +.|.+.-+--...-..+|+..|.+-+=|.+=+.++-++.....++
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~ 1240 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAP 1240 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCC
No 362
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=21.95 E-value=4e+02 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=18.2
Q ss_pred CCCEEEEEecCCeEEEEeCC
Q 031361 29 SGDLALVATLNGTVHLVDTK 48 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~ 48 (161)
.+..+++|+.||.+|+.+..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n 88 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWN 88 (238)
T ss_pred cCceEEeecccceEEEecCC
Confidence 78899999999999998875
No 363
>PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A; Provisional
Probab=21.74 E-value=1.6e+02 Score=26.48 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=18.0
Q ss_pred eEEEEeCCCCceeEEEecCCCee
Q 031361 41 TVHLVDTKRGESRWSFSMGKPIY 63 (161)
Q Consensus 41 ~lyAvd~~tG~~~W~f~t~~~i~ 63 (161)
.-..+|..||+.+|.-..+.++.
T Consensus 48 sail~D~~tG~vL~~knad~~~~ 70 (403)
T PRK10793 48 SYILIDYNSGKVLAEQNADVRRD 70 (403)
T ss_pred EEEEEECCCCcEehhcCcCCCcC
Confidence 45678999999999988776533
No 364
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=21.47 E-value=1.9e+02 Score=17.48 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=17.5
Q ss_pred EeeCCeEEEEeeCCEEEEEECCC
Q 031361 110 VWDDGALLLGHEKTSVFFVDAKS 132 (161)
Q Consensus 110 v~~dg~VyvGs~d~~lyalDa~T 132 (161)
+.+ +.+|++..++-|..+|..+
T Consensus 9 v~g-~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 9 VSG-NYAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEC-CEEEEEeCCCCEEEEECCC
Confidence 454 7799998888999999754
No 365
>PTZ00486 apyrase Superfamily; Provisional
Probab=20.93 E-value=6e+02 Score=22.66 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=6.4
Q ss_pred CCeEEEEeeC
Q 031361 113 DGALLLGHEK 122 (161)
Q Consensus 113 dg~VyvGs~d 122 (161)
|+.+||||-.
T Consensus 173 d~~LyVGs~G 182 (352)
T PTZ00486 173 DDKLYVGSIG 182 (352)
T ss_pred CCEEEEeccc
Confidence 4667777743
No 366
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.86 E-value=3.7e+02 Score=21.72 Aligned_cols=67 Identities=13% Similarity=0.264 Sum_probs=40.3
Q ss_pred CCeEEecCCCCEEEEEECCCCCeeccccCcccceec--------cee-----EeeCCeEEEEeeCCEEEEEECCCCcEEE
Q 031361 71 PDFYVDVGEDWKLYFHRKGIGKMKKPSIDVGEFMRR--------MPH-----VWDDGALLLGHEKTSVFFVDAKSGGMIC 137 (161)
Q Consensus 71 ~~~~V~~~ddg~Lyald~~tG~~~~w~~~~~~~V~s--------sP~-----v~~dg~VyvGs~d~~lyalDa~TG~~~W 137 (161)
+.+.+-...+|.||..|..+++...-+.++...+.. .|. +.++|..+|.-.++..|+-|.+=+..+.
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGCWIR 101 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccceeEE
Confidence 344333345678888888888774444355544432 222 2445776777777888888877665554
No 367
>PRK13659 hypothetical protein; Provisional
Probab=20.62 E-value=29 Score=25.55 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.0
Q ss_pred CCeEEEEeCCCCcee
Q 031361 39 NGTVHLVDTKRGESR 53 (161)
Q Consensus 39 DG~lyAvd~~tG~~~ 53 (161)
-.+.+|+|+.||+++
T Consensus 87 PnT~RCLDr~tGR~i 101 (103)
T PRK13659 87 PNTLRCLDRRTGRPI 101 (103)
T ss_pred CCchhhhhcccCCCC
Confidence 457789999999875
No 368
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=20.56 E-value=1.8e+02 Score=16.44 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=20.1
Q ss_pred EEEEEECCCCcEEEEecCCCCCCCcC
Q 031361 124 SVFFVDAKSGGMICSHESDNSASTLG 149 (161)
Q Consensus 124 ~lyalDa~TG~~~W~~~~~~~~~~~~ 149 (161)
.+.||+ .+|++..+......+|+..
T Consensus 2 ~VWav~-~~G~v~~R~Gis~~~P~G~ 26 (32)
T PF06462_consen 2 QVWAVT-SDGSVYFRTGISPSNPEGT 26 (32)
T ss_pred eEEEEc-CCCCEEEECcCCCCCCCCC
Confidence 578888 8899999988888777654
No 369
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.53 E-value=3.7e+02 Score=21.44 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCeEEEEeCCC--C--ceeEEEecCCCeecc
Q 031361 29 SGDLALVATLNGTVHLVDTKR--G--ESRWSFSMGKPIYSS 65 (161)
Q Consensus 29 ~~~~V~vgs~DG~lyAvd~~t--G--~~~W~f~t~~~i~ss 65 (161)
..+.-+.+-.+|.++=+-+.. + ++-|+.+....-.+.
T Consensus 55 ~~~~~LyAeV~Gk~~PVar~~~~nkYQVSW~~e~k~a~sG~ 95 (167)
T PF05404_consen 55 AKNISLYAEVNGKILPVARSGDTNKYQVSWTEEHKKASSGT 95 (167)
T ss_pred CcCccEEEEECCEEEEEEEcCCCCceEEEEEechhhccCCc
Confidence 345667788888887554422 2 355777665544443
No 370
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=20.47 E-value=7.2e+02 Score=23.36 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=39.0
Q ss_pred CCCCEEEEEECCCCCeeccccCcccceecceeE-eeCCeEEEEeeCCEEEEEEC-CCCcEEEEecCCCCC
Q 031361 78 GEDWKLYFHRKGIGKMKKPSIDVGEFMRRMPHV-WDDGALLLGHEKTSVFFVDA-KSGGMICSHESDNSA 145 (161)
Q Consensus 78 ~ddg~Lyald~~tG~~~~w~~~~~~~V~ssP~v-~~dg~VyvGs~d~~lyalDa-~TG~~~W~~~~~~~~ 145 (161)
...+.+|.+++.-- .-.++...+..+-.. ..++++.+|++.+ +++.+. ++-|.+|+++..++.
T Consensus 117 s~~~KvYvi~~~pp----~~~~i~~~i~ecg~l~l~~nvL~i~~~~g-it~yn~~e~~k~vw~~~fnGsy 181 (603)
T COG4880 117 SVNGKVYVIDKNPP----LLETIDCPIPECGILALGGNVLAIGEVGG-ITLYNLYESSKKVWVYNFNGSY 181 (603)
T ss_pred EeCCeEEEEcCCCc----hhhhcccCCccceEEEEcCcEEEEEEeCC-EEEEEeccccceeEEEecCCce
Confidence 34457888775432 223444445545443 4446566888764 566665 899999999876654
No 371
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.45 E-value=5.4e+02 Score=21.86 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=38.4
Q ss_pred EEEEEECCCCCeeccccCcccceecceeE------eeCCeEEEEe-eCCEEEEEECCCCcEEEEecCCCCCCCcC
Q 031361 82 KLYFHRKGIGKMKKPSIDVGEFMRRMPHV------WDDGALLLGH-EKTSVFFVDAKSGGMICSHESDNSASTLG 149 (161)
Q Consensus 82 ~Lyald~~tG~~~~w~~~~~~~V~ssP~v------~~dg~VyvGs-~d~~lyalDa~TG~~~W~~~~~~~~~~~~ 149 (161)
.|+..|++|=++ .-+ +.=-.++.|+- +-||.+|.-= -++++-.||+.||+++--++..+-..+++
T Consensus 151 tL~frdP~tfa~-~~~--v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~ 222 (262)
T COG3823 151 TLQFRDPKTFAE-LDT--VQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELN 222 (262)
T ss_pred EEEecCHHHhhh-cce--EEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcC
Confidence 566666654433 111 11125566662 2246677544 34578889999999998777655554443
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.38 E-value=2.7e+02 Score=26.87 Aligned_cols=66 Identities=26% Similarity=0.315 Sum_probs=0.0
Q ss_pred CeEEecCCCCEEEEEECCCCCeeccccC-cccceecceeEeeCCeEE-EEeeCCEEEEEECCCCcEEEEe
Q 031361 72 DFYVDVGEDWKLYFHRKGIGKMKKPSID-VGEFMRRMPHVWDDGALL-LGHEKTSVFFVDAKSGGMICSH 139 (161)
Q Consensus 72 ~~~V~~~ddg~Lyald~~tG~~~~w~~~-~~~~V~ssP~v~~dg~Vy-vGs~d~~lyalDa~TG~~~W~~ 139 (161)
+.+......|++-..... ..+.|.+. -++.+..+=+=.-||+.. ||=+||++...|+.+|..+-.+
T Consensus 33 dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 33 DLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred chhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
No 373
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.27 E-value=5.8e+02 Score=22.20 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=15.5
Q ss_pred EEecCCeEEEEeCCCCceeEE
Q 031361 35 VATLNGTVHLVDTKRGESRWS 55 (161)
Q Consensus 35 vgs~DG~lyAvd~~tG~~~W~ 55 (161)
..+++-+|--+|+.+|+++=+
T Consensus 133 l~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred hhhcCCceEEEecCCCceeee
Confidence 566777777888888887633
No 374
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=20.11 E-value=5.5e+02 Score=23.48 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.7
Q ss_pred CCCCCCCEEEEEecCCeEEEEeCCCCc
Q 031361 25 ASPESGDLALVATLNGTVHLVDTKRGE 51 (161)
Q Consensus 25 ~s~~~~~~V~vgs~DG~lyAvd~~tG~ 51 (161)
=||..+++..-+|.||.|.--|-++|.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCC
Confidence 346688888899999999998888884
No 375
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=20.06 E-value=1.4e+02 Score=26.31 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=18.0
Q ss_pred CCeEEEEeeCCEEEEEECCCCcE
Q 031361 113 DGALLLGHEKTSVFFVDAKSGGM 135 (161)
Q Consensus 113 dg~VyvGs~d~~lyalDa~TG~~ 135 (161)
.+.||||+.| +||.||..+-++
T Consensus 10 ~~~lYVGa~n-~ly~L~~~~l~~ 31 (433)
T PF01403_consen 10 TGRLYVGARN-RLYQLNFSDLEE 31 (433)
T ss_dssp TTEEEEEEBT-EEEEEETTTTEE
T ss_pred CCEEEEEEee-EEEEEecccccc
Confidence 3789999977 999999776554
Done!