BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031362
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
Length = 279
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 3 ELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCII 60
+L +GYN +G SQG R V + C PP+ N +S+GG H G +P C S C
Sbjct: 77 KLQQGYNAMGFSQGGQFLRAVAQRCPS-PPMVNLISVGGQHQGVFGLPRCPGESSHICDF 135
Query: 61 ANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 120
+ A Y+ +Q+ L + Y P Y FL +N E N +YK+
Sbjct: 136 IRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQE--RGVNESYKKNLM 193
Query: 121 SLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQK 160
+L+ V++ F +D ++ P ++ WFG+Y G +P Q+
Sbjct: 194 ALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQE 233
>pdb|3GRO|A Chain A, Human Palmitoyl-Protein Thioesterase 1
pdb|3GRO|B Chain B, Human Palmitoyl-Protein Thioesterase 1
Length = 298
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 3 ELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCII 60
+L +GYN G SQG R V + C PP N +S+GG H G +P C S C
Sbjct: 84 KLQQGYNAXGFSQGGQFLRAVAQRCPS-PPXINLISVGGQHQGVFGLPRCPGESSHICDF 142
Query: 61 ANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 120
+ A YS VQ+ L + Y P Y FL +N E N +YK+
Sbjct: 143 IRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE--RGINESYKKNLX 200
Query: 121 SLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQK 160
+L+ V + F +D ++ P ++ WFG+Y G +P Q+
Sbjct: 201 ALKKFVXVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQE 240
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 1 MKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLCGSGIFCII 60
M + +G +++ SQG L+ R ++ + V +F+SL P G +F
Sbjct: 98 MAKAPQGVHLICYSQGGLVCRALLSVMDDHN-VDSFISLSSPQMGQYGDTDYLKWLFPTS 156
Query: 61 ANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 120
+ + YS + Q+ + Y P+ YL FL +N E + +++ F
Sbjct: 157 MRSNLYRICYSPWGQE-FSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFL 215
Query: 121 SLQNLVLIMFKDDKVLIPKETAWFGYY 147
+ +LVLI DD V+ P ++++FG+Y
Sbjct: 216 RVGHLVLIGGPDDGVITPWQSSFFGFY 242
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 30.4 bits (67), Expect = 0.43, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 42 PHAGTASVPLCGSGIFCIIANNLIKAEV-YSDYVQDHLAPSGYL 84
P A++ LC +GIF + NNL+ A+V + + H P+ Y+
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI 280
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 30.4 bits (67), Expect = 0.46, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 42 PHAGTASVPLCGSGIFCIIANNLIKAEV-YSDYVQDHLAPSGYL 84
P A++ LC +GIF + NNL+ A+V + + H P+ Y+
Sbjct: 233 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI 276
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Query: 35 NFVSLGGPHAGTASVPLCGSGIFCIIANNLIKAEVYSDYVQDHLA------PSGYLKFPN 88
NF +L GP G+ SV +AN ++ +E++ D+V D +A +G P
Sbjct: 435 NFFNLTGP--GSPSV----------LANMVLHSELHVDWVADAIAYLDARGAAGIEGTPE 482
Query: 89 DIPKYLEKCK 98
+ ++E+C+
Sbjct: 483 AVADWVEECR 492
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Query: 35 NFVSLGGPHAGTASVPLCGSGIFCIIANNLIKAEVYSDYVQDHLA------PSGYLKFPN 88
NF +L GP G+ SV +AN ++ +E++ D+V D +A +G P
Sbjct: 435 NFFNLTGP--GSPSV----------LANMVLHSELHVDWVADAIAYLDARGAAGIEGTPE 482
Query: 89 DIPKYLEKCK 98
+ ++E+C+
Sbjct: 483 AVADWVEECR 492
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Query: 35 NFVSLGGPHAGTASVPLCGSGIFCIIANNLIKAEVYSDYVQDHLA------PSGYLKFPN 88
NF +L GP G+ SV +AN ++ +E++ D+V D +A +G P
Sbjct: 435 NFFNLTGP--GSPSV----------LANMVLHSELHVDWVADAIAYLDARGAAGIEGTPE 482
Query: 89 DIPKYLEKCK 98
+ ++E+C+
Sbjct: 483 AVADWVEECR 492
>pdb|2GQ1|A Chain A, Crystal Structure Of Recombinant Type I
Fructose-1,6-Bisphosphatase From Escherichia Coli
Complexed With Sulfate Ions
pdb|2OWZ|A Chain A, R-state, Citrate And Fru-6-p-bound Escherichia Coli
Fructose-1,6- Bisphosphatase
pdb|2OX3|A Chain A, R-State, Pep And Fru-6-P-Bound, Escherichia Coli
Fructose-1, 6-Bisphosphatase
pdb|2Q8M|A Chain A, T-Like Fructose-1,6-Bisphosphatase From Escherichia Coli
With Amp, Glucose 6-Phosphate, And Fructose
1,6-Bisphosphate Bound
pdb|2Q8M|B Chain B, T-Like Fructose-1,6-Bisphosphatase From Escherichia Coli
With Amp, Glucose 6-Phosphate, And Fructose
1,6-Bisphosphate Bound
pdb|2QVR|A Chain A, E. Coli Fructose-1,6-Bisphosphatase: Citrate, Fru-2,6-P2,
And Mg2+ Bound
Length = 332
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 41 GPHAGTASVPLCGSGIFCIIANNLI---KAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKC 97
G HA T L G+FC+ K + YS + Y+KFPN + KY++ C
Sbjct: 174 GVHAFTYDPSL---GVFCLCQERXRFPEKGKTYS------INEGNYIKFPNGVKKYIKFC 224
Query: 98 KFLPKLNNE 106
+ K N
Sbjct: 225 QEEDKSTNR 233
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 66 KAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFSSLQNL 125
+ YSD +++ L P GY L K K P N D +N F ++
Sbjct: 144 RGXAYSDLIKNDLEPKGYYS--------LSKVKLYPTYNETXADLKNGNLDLAF--IEEP 193
Query: 126 VLIMFKDDK 134
V FK+ K
Sbjct: 194 VYFTFKNKK 202
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 66 KAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFSSLQNL 125
+ YSD +++ L P GY L K K P N D +N F ++
Sbjct: 124 RGXAYSDLIKNDLEPKGYYS--------LSKVKLYPTYNETXADLKNGNLDLAF--IEEP 173
Query: 126 VLIMFKDDK 134
V FK+ K
Sbjct: 174 VYFTFKNKK 182
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 86 FPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFSS 121
FPN K LEK K K+ N+L +K YKE F S
Sbjct: 206 FPN---KTLEKLKSHVKIRNDLLNKILENYKEKFRS 238
>pdb|3OZ2|A Chain A, Crystal Structure Of A Geranylgeranyl Bacteriochlorophyll
Reductase- Like (Ta0516) From Thermoplasma Acidophilum
At 1.60 A Resolution
Length = 397
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 36 FVSLGGPHAGTASVPLCGSGIFCIIANNLIKAEV---YSDYVQDHLAPSGYL 84
F S G AG SV L + I + I +V Y+D+ +AP+GY+
Sbjct: 160 FESEFGRWAGLKSVILARNDIISALQYRXINVDVDPDYTDFYLGSIAPAGYI 211
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 44 AGTASVPLCGSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLK----FPNDIPKYLEKCKF 99
A VP+ G + N++ K EV D L G+ K FP D P+ K KF
Sbjct: 13 ADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKF 72
Query: 100 LPKLNNELPDKRNSTYKECFSSLQN 124
+ ++ + DK + C S L +
Sbjct: 73 ISEIWHPNIDKEGNV---CISILHD 94
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 27 CEGGPPVKNFVSLGGPH 43
+G PP+K + SL GPH
Sbjct: 443 AQGSPPLKEWQSLAGPH 459
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.142 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,677,158
Number of Sequences: 62578
Number of extensions: 242709
Number of successful extensions: 542
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 22
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)