BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031364
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 152 bits (385), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 106/159 (66%), Gaps = 2/159 (1%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV T +E TS +PP +LFK FVL D L+PK+ PQ +K+ E++ GDGGPG+IKK F E
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVI 121
G+ + Y KH++D++DKEN Y+YT I EGDA T++ +SYE+K+V +P GGS
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLI--EGDALGDTLEKISYETKLVASPSGGSIIKSTS 118
Query: 122 KFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 160
++ K EIKEE VK G EK +FK +E Y +P+A
Sbjct: 119 HYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDA 157
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 106/159 (66%), Gaps = 2/159 (1%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV T +E TS +PP +LFK FVL D L+PK+ PQ +K+ E++ GDGGPG+IKK F E
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVI 121
G+ + Y KH++D++DKEN Y+YT I EGDA T++ +SYE+K+V +P GGS
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLI--EGDALGDTLEKISYETKLVASPSGGSIIKSTS 118
Query: 122 KFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 160
++ K EIKEE VK G EK +FK +E Y +P+A
Sbjct: 119 HYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDA 157
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 1 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV 60
MGV T E TS +P KLFK FVL D L+PK+ PQ VK E++ GDGGPG+IKK F
Sbjct: 1 MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 61 EGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVV 120
EG+ + Y KH++ ++DK N Y+Y+ I EGDA I+ + YE+K+V P GG+
Sbjct: 61 EGSHYGYVKHKIHSIDKVNHTYSYSLI--EGDALSENIEKIDYETKLVSAPHGGTIIKTT 118
Query: 121 IKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 159
K++ K EIKEE VK G EK +FK +E Y +P+
Sbjct: 119 SKYHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPS 157
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 101/161 (62%), Gaps = 6/161 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV E TS +P +LFK F+L D L PKV PQ + +VE ISG+GGPG+IKK +F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTV 119
G +KY K RVD +D N YNY+ IEG GD T++ +S E K+V TPDGGS +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD----TLEKISNEIKIVATPDGGSILKI 116
Query: 120 VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 160
K++ K E+K EQVK E + + +A+E+Y LA+ +A
Sbjct: 117 SNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 157
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 133 bits (334), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 100/161 (62%), Gaps = 6/161 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV E TS +P ++FK F+L D L+PKV PQ + +VE I G+GGPG+IKK NF E
Sbjct: 1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTV 119
G +KY K RVD +D N YNY+ IEG GD T++ +S E K+V TPDGG +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKI 116
Query: 120 VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 160
K++ K E+K EQVK E + + +A+E+Y LA+ +A
Sbjct: 117 SNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 157
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 132 bits (333), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 100/161 (62%), Gaps = 6/161 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV E TS +P +LFK F+L D L PKV PQ + +VE I G+GGPG+IKK +F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTV 119
G +KY K RVD +D N YNY+ IEG GD T++ +S E K+V TPDGGS +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD----TLEKISNEIKIVATPDGGSILKI 116
Query: 120 VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 160
K++ K E+K EQVK E + + +A+E+Y LA+ +A
Sbjct: 117 SNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 157
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 132 bits (333), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 6/161 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV E TS +P +LFK F+L D L+PKV PQ + +VE I G+GGPG+IKK +F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTV 119
G +KY K RVD +D N YNY+ IEG GD T++ +S E K+V TPDGGS +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD----TLEKISNEIKIVATPDGGSILKI 116
Query: 120 VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 160
K++ K E+K EQVK E + + +A+E+Y LA+ +A
Sbjct: 117 SNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 157
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 132 bits (332), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 100/161 (62%), Gaps = 6/161 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV E TS +P +LFK F+L D L PKV PQ + +VE I G+GGPG+IKK +F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTV 119
G +KY K RVD +D N YNY+ IEG GD T++ +S E K+V TPDGGS +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD----TLEKISNEIKIVATPDGGSILKI 116
Query: 120 VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 160
K++ K E+K EQVK E + + +A+E+Y LA+ +A
Sbjct: 117 SNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 157
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 6/161 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV E TS +P +LFK F+L DTL P+V PQ + +VE ISG+GGPG+IKK +F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTV 119
G +KY K RVD +D N YNY+ IEG GD T++ +S E K+V T DGGS +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD----TLEKISNEIKIVATGDGGSILKI 116
Query: 120 VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 160
K++ K E+K EQVK E + + +A+E+Y LA+ +A
Sbjct: 117 SNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 157
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 100/161 (62%), Gaps = 6/161 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV E TS +P +LFK F+L D L PKV PQ + +VE I G+GGPG+IKK +F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTV 119
G +KY K RVD +D N YNY+ IEG GD T++ +S E K+V TPDGGS +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD----TLEKISNEIKIVATPDGGSILKI 116
Query: 120 VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 160
K++ K E+K EQVK E + + +A+E+Y LA+ +A
Sbjct: 117 SNKYHTKGDHEVKAEQVKASKELGETLLRAVESYLLAHSDA 157
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 100/161 (62%), Gaps = 6/161 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV E TS +P +LFK F+L D L PKV PQ + +VE I G+GGPG+IKK +F E
Sbjct: 1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTV 119
G +KY K RVD +D N Y+Y+ IEG GD T++ +S E K+V TP+GGS +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGD----TLEKISNEIKIVATPNGGSILKI 116
Query: 120 VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 160
K++ K E+K EQ+K E + + +A+E+Y LA+ +A
Sbjct: 117 NNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDA 157
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 101/160 (63%), Gaps = 5/160 (3%)
Query: 1 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV 60
MGV T E TST+ P KL+K V D ++PK + + +++VE++ G+GGPG+IKK F+
Sbjct: 1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 61 EGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIP-TIDHVSYESKVVGTPDGGSKSTV 119
EG + KY H+++A+D+ N YNY+ + G G +P TI+ +S+E+K+V +GGS V
Sbjct: 60 EGGESKYVLHKIEAIDEANLGYNYSIVGGVG---LPDTIEKISFETKLVEGANGGSIGKV 116
Query: 120 VIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 159
IK K A+ EE+ K + FKA+E+Y A+P+
Sbjct: 117 TIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 5/158 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV T E TST+ P +L+K V D ++PK + + ++++E + G+GGPG+IKK +E
Sbjct: 1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGEGDANIP-TIDHVSYESKVVGTPDGGSKSTVV 120
G + KY H+++A+D+ N YNY+ + G G +P TI+ +S+E+K+V +GGS V
Sbjct: 60 GGETKYVLHKIEAVDEANLRYNYSIVGGVG---LPDTIEKISFETKLVEGANGGSIGKVT 116
Query: 121 IKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 158
IK K A+ EE+ K + FKA+E Y A+P
Sbjct: 117 IKIETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHP 154
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 98/159 (61%), Gaps = 5/159 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV T E S + P L+K V D ++PK L K+VE + G+GGPG+IKK F+E
Sbjct: 1 GVFTFEDEINSPVAPATLYKALVTDADNVIPKALDSF-KSVENVEGNGGPGTIKKITFLE 59
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGEGDANIP-TIDHVSYESKVVGTPDGGSKSTVV 120
+ K+ H+++++D+ N Y+Y+ + G A +P T + ++++SK+V P+GGS +
Sbjct: 60 DGETKFVLHKIESIDEANLGYSYSVV---GGAALPDTAEKITFDSKLVAGPNGGSAGKLT 116
Query: 121 IKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 159
+K+ K AE ++++K G K +FKA+EAY LA+P+
Sbjct: 117 VKYETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPD 155
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 99/159 (62%), Gaps = 6/159 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
G+ E++ST+ P KL+K D ++PKV+ + +++VE++ G+GGPG+IKK +
Sbjct: 1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVI 121
+ H++DA+D+ N YNY+ I GEG +++ +SYESK++ PDGGS + +
Sbjct: 60 DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDE--SLEKISYESKILPGPDGGSIGKINV 117
Query: 122 KFYPKPGAEIKEEQVKGGLE-KEKGIFKALEAYALANPN 159
KF+ K ++ E V+ + K G+FKA+E Y LA+P+
Sbjct: 118 KFHTK--GDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 1 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV 60
M T+ EE S + P +LFK VL +L K P V K+ E+I GDGG G++ K FV
Sbjct: 7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 61 EGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVV 120
+G Y H+ D +D N YT EGD I+ V YE K+ GGSK +
Sbjct: 67 DGHPLTYMLHKFDEIDAANFYCKYTLF--EGDVLRDNIEKVVYEVKLEAV-GGGSKGKIT 123
Query: 121 IKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 158
+ ++PKPG + EE+VK G +K +K +E Y ANP
Sbjct: 124 VTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANP 161
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 96/160 (60%), Gaps = 4/160 (2%)
Query: 1 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV 60
MGV+T +E S+L EKL++ V + + PK LP+ ++ E + GDGGPG+IKK FV
Sbjct: 6 MGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFV 65
Query: 61 EGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVV 120
D+ K +D +D+EN Y Y+ EG ++ P ++ + +E K+V TP+ G
Sbjct: 66 --GDFGSTKQHIDMVDRENCAYTYSVYEGIALSDQP-LEKIVFEFKLVPTPEEGCIVKST 122
Query: 121 IKFYPK-PGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 159
K+Y K E+ ++ ++ G+E+ +G KA+E++ LANP+
Sbjct: 123 TKYYTKGDDIELSKDYLEAGIERFEGFTKAVESFLLANPD 162
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 102 bits (255), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 92/161 (57%), Gaps = 10/161 (6%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV E S + KLFK D ++PKV+ Q+ ++VE++ G+GGPG++KK
Sbjct: 1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQI-QSVEIVEGNGGPGTVKKITASH 59
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVI 121
G Y H++DA+D+ + YNY+ + G G +++ +++ESK++ PDGGS + +
Sbjct: 60 GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDE--SLEKITFESKLLSGPDGGSIGKIKV 117
Query: 122 KFYPKPGA---EIKEEQVKGGLEKEKGIFKALEAYALANPN 159
KF+ K ++EE G G+FKA+E Y LANPN
Sbjct: 118 KFHTKGDVLSDAVREEAKARGT----GLFKAVEGYVLANPN 154
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 1 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV 60
MGV T E TS++ EK+F+ FV+ DT+LPK P K+VE I GDGGPG++K
Sbjct: 1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLP 59
Query: 61 EGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVV 120
+G R+D ++KE ++Y+ I+G D + I+ + +V T DGGS
Sbjct: 60 DGGPITTMTLRIDGVNKEALTFDYSVIDG--DILLGFIESIENHVVLVPTADGGSICKTT 117
Query: 121 IKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 157
F+ K A + EE +K E+ +FKALEAY +AN
Sbjct: 118 AIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 5/158 (3%)
Query: 2 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE 61
GV E +S++ P KL+K DT+ K+ ++++EL+ G+GG G+IKK E
Sbjct: 1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKI-DGPIQSIELVEGNGGVGTIKKITANE 59
Query: 62 GADWKYFKHRVDALDKENKIYNYTAIEGEGDANIP-TIDHVSYESKVVGTPDGGSKSTVV 120
G + +VDA+D+ N Y+Y+ + G G +P +++ +S+E+KVV GGS S V
Sbjct: 60 GDKTSFVLQKVDAIDEANLGYDYSIVGGTG---LPESLEKLSFETKVVAGSGGGSISKVT 116
Query: 121 IKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 158
+KF+ K A + + L K G FKA+E Y LANP
Sbjct: 117 LKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANP 154
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 1 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV 60
MG + + E TS++ EK+F VL DT++PK K+VE + GDGG G+++
Sbjct: 1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVE-VKGDGGAGTVRIITLP 59
Query: 61 EGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVV 120
EG+ R DA++KE Y+ T I+G D + I+ + VV T DGGS +
Sbjct: 60 EGSPITTMTVRTDAVNKEALSYDSTVIDG--DILLGFIESIETHMVVVPTADGGSITKTT 117
Query: 121 IKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 157
F+ K A + EE +K + +FKA+EAY +AN
Sbjct: 118 AIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
Length = 155
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADW 65
N + ++ E L+ + F T++PKVLP +VK+V+LI GDGG G+I FNF+
Sbjct: 5 FNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP 64
Query: 66 KYFKHRVDALDKENKIYNYTAIEG 89
Y + + D+ + IEG
Sbjct: 65 SYQREEITEFDESSHEIGLQVIEG 88
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEG-AD 64
N + T + E L+ ++PKVLP +VK+V++I GDGG G+ FNF+ G A
Sbjct: 5 FNTQTTLNVGLEALWAAQSKDITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPGIAP 64
Query: 65 WKYFKHRVDALDKENKIYNYTAIEG----EGDANIPTIDHVSYESKVVGTPDGGSKSTVV 120
Y + + D+ + +EG +G + T S S+ +K+ V
Sbjct: 65 VNYQREVITEYDELSHTIGLQVVEGGYLNQGLSYYKTTFQFSAISE--------NKTLVN 116
Query: 121 IKFYPKPGAEIKEEQVKGGLEKEKGIF 147
+K +E+ EE+VK E +F
Sbjct: 117 VKISYDHESELIEEKVKPTKTSESTLF 143
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 23 FVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82
+ FD P+ VK LISGDG GS+++ + G + R++ +D ++++
Sbjct: 42 LIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPFSTSTERLEFVDDDHRVL 99
Query: 83 NYTAIEGE 90
++ + GE
Sbjct: 100 SFRVVGGE 107
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 23 FVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82
+ FD P+ VK LISGDG GS+++ + G R++ +D ++++
Sbjct: 56 LIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVL 113
Query: 83 NYTAIEGE 90
++ + GE
Sbjct: 114 SFRVVGGE 121
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 23 FVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82
+ FD P+ VK LISGDG GS+++ + G R++ +D ++++
Sbjct: 53 LIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVL 110
Query: 83 NYTAIEGE 90
++ + GE
Sbjct: 111 SFRVVGGE 118
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 16 PEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDAL 75
P + + FD P+ VK LISGDG GS+++ + G R++ +
Sbjct: 35 PASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFV 92
Query: 76 DKENKIYNYTAIEGE 90
D ++++ ++ + GE
Sbjct: 93 DDDHRVLSFRVVGGE 107
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 23 FVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82
+ FD P+ VK LISGDG GS+++ + G R++ +D ++++
Sbjct: 41 LIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVL 98
Query: 83 NYTAIEGE 90
++ + GE
Sbjct: 99 SFRVVGGE 106
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 23 FVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82
+ FD P+ VK LISGDG GS+++ + G R++ +D ++++
Sbjct: 42 LIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVL 99
Query: 83 NYTAIEGE 90
++ + GE
Sbjct: 100 SFRVVGGE 107
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 23 FVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82
+ FD P+ VK LISGDG GS+++ + G R++ +D ++++
Sbjct: 56 LIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVL 113
Query: 83 NYTAIEGE 90
++ + GE
Sbjct: 114 SFRIVGGE 121
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 31 LPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG 89
LP +LP + +E+I GDGG G+I FV G +K + +D E+++ IEG
Sbjct: 57 LPDLLPGAFEKLEII-GDGGVGTILDXTFVPGEFPHEYKEKFILVDNEHRLKKVQXIEG 114
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 31 LPKVLPQVVKNVELISGDGGP-GSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG 89
+ K P ++ +L GD G GSI +N+V + K K R++A++ + + + IEG
Sbjct: 43 VSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEG 102
Query: 90 E 90
+
Sbjct: 103 D 103
>pdb|1W6T|A Chain A, Crystal Structure Of Octameric Enolase From Streptococcus
Pneumoniae
pdb|1W6T|B Chain B, Crystal Structure Of Octameric Enolase From Streptococcus
Pneumoniae
Length = 444
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 76 DKENKIYNYTAIEGEGDANIPTIDHVSYESKVV 108
DKE K+Y+YT EGEG A + + + Y ++V
Sbjct: 260 DKERKVYDYTKFEGEGAAVRTSAEQIDYLEELV 292
>pdb|4EWJ|A Chain A, Structure Of The Enloase From Streptococcus Suis Serotype
2
pdb|4EWJ|B Chain B, Structure Of The Enloase From Streptococcus Suis Serotype
2
Length = 443
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 76 DKENKIYNYTAIEGEGDANIPTIDHVSYESKVV 108
DKE K+Y+YT EGEG A + + + Y ++V
Sbjct: 251 DKERKVYDYTKFEGEGAAVRTSAEQIDYLEELV 283
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 92 DANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALE 151
D IPT D +S TP+ +++T V GA + + + +EK ALE
Sbjct: 350 DGPIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAARLLLDAVSREKPTVSALE 409
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 63 ADWKYFKHRVDALDKE---NKIYNYTAIEGEGDANIPTIDHVSY 103
+ K++K R++ L KE KI+ +IE NIP+I V Y
Sbjct: 144 STIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGY 187
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 63 ADWKYFKHRVDALDKE---NKIYNYTAIEGEGDANIPTIDHVSY 103
+ K++K R++ L KE KI+ +IE NIP+I V Y
Sbjct: 144 STIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGY 187
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 63 ADWKYFKHRVDALDKE---NKIYNYTAIEGEGDANIPTIDHVSY 103
+ K++K R++ L KE KI+ +IE NIP+I V Y
Sbjct: 144 STIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGY 187
>pdb|3BBO|2 Chain 2, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 57
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 125 PKPGAEIKEEQVKGGLEKEKGIFKALEAYALA 156
PK I +++++ + K+KG + AL+A++LA
Sbjct: 4 PKKRTSIYKKRIRKNIWKKKGYWAALKAFSLA 35
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 76 DKENKIY-NYTAIEGEGDANIPTIDHVSYESKVVG 109
DK+ I NY I G D + D ++++KVVG
Sbjct: 61 DKQGHIVTNYHVIRGASDLRVTLADQTTFDAKVVG 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,494,878
Number of Sequences: 62578
Number of extensions: 246990
Number of successful extensions: 480
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 41
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)