Query 031364
Match_columns 161
No_of_seqs 123 out of 873
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 13:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.3E-43 2.9E-48 266.0 19.4 150 1-157 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 2.7E-36 5.8E-41 225.3 19.8 146 4-156 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 1.1E-17 2.4E-22 120.3 17.4 138 5-154 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 1.7E-14 3.7E-19 103.7 19.3 108 3-125 1-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 8.1E-14 1.8E-18 101.7 16.6 135 7-154 2-142 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.6 3.3E-13 7.1E-18 98.3 15.5 113 6-128 1-113 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.5 1.9E-12 4.1E-17 93.3 17.4 112 4-127 2-114 (140)
8 cd08865 SRPBCC_10 Ligand-bindi 99.5 3E-12 6.5E-17 91.7 16.1 107 6-125 1-108 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.5 3.7E-12 7.9E-17 92.7 14.7 134 7-155 2-136 (138)
10 cd07822 SRPBCC_4 Ligand-bindin 99.4 2.9E-11 6.3E-16 86.8 16.6 110 6-126 2-112 (141)
11 cd08862 SRPBCC_Smu440-like Lig 99.4 4.6E-11 1E-15 86.0 16.5 107 5-126 2-108 (138)
12 cd07812 SRPBCC START/RHO_alpha 99.4 7E-11 1.5E-15 82.5 15.6 112 7-129 2-114 (141)
13 cd07825 SRPBCC_7 Ligand-bindin 99.3 8.4E-11 1.8E-15 85.7 14.9 139 6-154 2-143 (144)
14 cd07814 SRPBCC_CalC_Aha1-like 99.3 1.1E-10 2.4E-15 84.0 14.4 136 6-154 2-137 (139)
15 cd08860 TcmN_ARO-CYC_like N-te 99.3 2.4E-10 5.3E-15 85.1 16.4 113 5-129 2-116 (146)
16 cd05018 CoxG Carbon monoxide d 99.3 4E-10 8.6E-15 81.5 15.0 114 5-128 2-115 (144)
17 cd07818 SRPBCC_1 Ligand-bindin 99.3 8E-10 1.7E-14 81.1 16.1 113 4-127 2-118 (150)
18 cd07817 SRPBCC_8 Ligand-bindin 99.2 7.3E-10 1.6E-14 79.8 14.4 108 5-128 1-108 (139)
19 PF03364 Polyketide_cyc: Polyk 99.2 1.8E-09 4E-14 77.4 14.9 107 12-131 1-109 (130)
20 cd07820 SRPBCC_3 Ligand-bindin 99.2 1.4E-09 3E-14 79.3 13.2 109 6-126 1-112 (137)
21 cd07824 SRPBCC_6 Ligand-bindin 99.2 6.3E-09 1.4E-13 76.6 16.4 109 5-127 2-113 (146)
22 cd07823 SRPBCC_5 Ligand-bindin 99.1 6.5E-09 1.4E-13 76.5 14.2 138 7-153 2-143 (146)
23 PRK10724 hypothetical protein; 99.1 1E-08 2.2E-13 77.5 15.2 134 4-152 15-149 (158)
24 COG3427 Carbon monoxide dehydr 99.0 2.2E-08 4.7E-13 74.5 12.7 142 5-156 2-145 (146)
25 PF06240 COXG: Carbon monoxide 98.8 4E-07 8.6E-12 67.0 14.5 136 9-154 2-139 (140)
26 cd08898 SRPBCC_CalC_Aha1-like_ 98.7 3.2E-07 6.9E-12 66.5 12.2 139 5-155 2-144 (145)
27 cd08899 SRPBCC_CalC_Aha1-like_ 98.7 6.5E-07 1.4E-11 66.9 13.4 130 3-158 10-139 (157)
28 cd08900 SRPBCC_CalC_Aha1-like_ 98.6 1.2E-05 2.7E-10 58.7 16.4 137 6-155 2-142 (143)
29 COG5637 Predicted integral mem 98.5 8.9E-07 1.9E-11 67.8 9.7 108 4-128 70-179 (217)
30 cd07826 SRPBCC_CalC_Aha1-like_ 98.5 6E-06 1.3E-10 60.6 13.9 140 6-156 2-142 (142)
31 cd08895 SRPBCC_CalC_Aha1-like_ 98.5 1.6E-05 3.6E-10 58.4 15.6 136 5-155 1-145 (146)
32 cd08893 SRPBCC_CalC_Aha1-like_ 98.5 8.9E-06 1.9E-10 58.1 13.7 134 5-154 1-134 (136)
33 cd08894 SRPBCC_CalC_Aha1-like_ 98.5 8.3E-06 1.8E-10 59.4 12.8 134 6-155 2-138 (139)
34 cd08896 SRPBCC_CalC_Aha1-like_ 98.4 2E-05 4.3E-10 57.9 13.5 140 6-155 2-145 (146)
35 cd08876 START_1 Uncharacterize 98.4 0.0001 2.2E-09 56.6 17.5 145 4-154 41-194 (195)
36 cd08897 SRPBCC_CalC_Aha1-like_ 98.3 2.2E-05 4.8E-10 56.8 12.6 129 5-155 1-132 (133)
37 cd08891 SRPBCC_CalC Ligand-bin 98.3 9.3E-05 2E-09 54.5 14.7 138 6-155 2-148 (149)
38 PF08327 AHSA1: Activator of H 98.1 9.2E-05 2E-09 52.0 11.6 121 13-154 1-123 (124)
39 COG3832 Uncharacterized conser 98.0 0.00051 1.1E-08 51.1 14.7 139 4-155 8-148 (149)
40 cd08901 SRPBCC_CalC_Aha1-like_ 98.0 0.00025 5.5E-09 51.5 11.7 129 6-157 2-133 (136)
41 COG2867 Oligoketide cyclase/li 97.9 0.00011 2.4E-09 54.6 9.3 112 5-128 3-114 (146)
42 cd08892 SRPBCC_Aha1 Putative h 97.8 0.0016 3.5E-08 46.7 13.8 122 6-154 2-124 (126)
43 PTZ00220 Activator of HSP-90 A 97.6 0.0013 2.9E-08 47.8 10.1 122 12-155 1-127 (132)
44 cd08874 START_STARD9-like C-te 97.3 0.046 1E-06 43.0 16.3 125 6-133 47-183 (205)
45 cd08873 START_STARD14_15-like 97.2 0.061 1.3E-06 43.2 16.5 149 4-157 77-235 (235)
46 cd08863 SRPBCC_DUF1857 DUF1857 97.2 0.055 1.2E-06 40.2 14.9 110 15-149 18-130 (141)
47 cd08905 START_STARD1-like Chol 96.3 0.31 6.7E-06 38.1 14.3 145 6-155 51-207 (209)
48 PF08982 DUF1857: Domain of un 96.3 0.084 1.8E-06 39.5 10.2 98 6-126 2-108 (149)
49 cd08913 START_STARD14-like Lip 96.1 0.54 1.2E-05 37.9 15.5 117 5-125 82-209 (240)
50 cd08877 START_2 Uncharacterize 95.8 0.67 1.5E-05 36.1 14.6 148 3-155 45-213 (215)
51 cd00177 START Lipid-binding ST 95.8 0.54 1.2E-05 34.9 16.8 144 4-152 39-190 (193)
52 cd08906 START_STARD3-like Chol 95.7 0.73 1.6E-05 36.1 16.3 142 5-155 50-207 (209)
53 COG4276 Uncharacterized conser 95.7 0.59 1.3E-05 34.6 12.2 114 4-128 2-120 (153)
54 cd08903 START_STARD5-like Lipi 95.4 0.97 2.1E-05 35.3 16.3 144 6-155 48-206 (208)
55 cd08914 START_STARD15-like Lip 95.1 1.4 3E-05 35.5 14.8 117 4-125 78-205 (236)
56 cd08868 START_STARD1_3_like Ch 94.7 1.5 3.2E-05 34.0 16.4 146 6-156 50-207 (208)
57 cd08871 START_STARD10-like Lip 94.7 1.6 3.5E-05 34.1 15.8 146 5-156 48-202 (222)
58 cd08870 START_STARD2_7-like Li 92.5 4.1 8.9E-05 31.6 17.0 147 4-155 50-207 (209)
59 cd08911 START_STARD7-like Lipi 91.9 4.9 0.00011 31.3 15.6 146 5-155 46-205 (207)
60 cd08869 START_RhoGAP C-termina 91.8 4.9 0.00011 31.0 14.6 120 5-129 45-171 (197)
61 smart00234 START in StAR and p 91.3 5.2 0.00011 30.4 17.3 148 4-156 45-202 (206)
62 PF10698 DUF2505: Protein of u 90.4 5.9 0.00013 29.5 13.8 108 7-126 2-128 (159)
63 cd08867 START_STARD4_5_6-like 90.2 7.1 0.00015 30.1 15.2 141 6-154 48-205 (206)
64 cd08872 START_STARD11-like Cer 89.1 10 0.00022 30.3 14.5 144 5-157 53-227 (235)
65 cd08908 START_STARD12-like C-t 83.9 19 0.00041 28.3 12.3 120 4-128 52-177 (204)
66 cd08910 START_STARD2-like Lipi 79.9 26 0.00057 27.2 14.6 143 4-154 49-204 (207)
67 KOG3177 Oligoketide cyclase/li 69.7 21 0.00045 28.4 6.3 103 11-127 75-182 (227)
68 PF01852 START: START domain; 58.7 75 0.0016 23.8 18.4 148 4-158 46-204 (206)
69 PF11485 DUF3211: Protein of u 55.9 16 0.00034 27.0 3.3 40 6-48 3-42 (136)
70 cd00222 CollagenBindB Collagen 42.6 42 0.00092 26.0 4.0 73 12-92 3-75 (187)
71 KOG2936 Uncharacterized conser 38.1 1.6E+02 0.0034 24.7 6.8 96 4-122 173-271 (301)
72 PF02021 UPF0102: Uncharacteri 29.8 1.8E+02 0.0039 19.6 5.3 66 83-158 14-79 (93)
73 PRK14681 hypothetical protein; 27.0 2.7E+02 0.0059 20.9 6.0 68 82-158 60-127 (158)
74 KOG0301 Phospholipase A2-activ 26.7 2.8E+02 0.0061 26.0 7.0 76 3-87 146-228 (745)
75 TIGR02208 lipid_A_msbB lipid A 25.4 1.6E+02 0.0034 24.1 4.9 37 119-159 249-285 (305)
76 PRK14680 hypothetical protein; 25.3 2.7E+02 0.0059 20.3 6.0 66 83-158 24-89 (134)
77 PRK14688 hypothetical protein; 25.1 2.6E+02 0.0056 20.0 5.7 66 83-158 24-89 (121)
78 cd08904 START_STARD6-like Lipi 25.0 3.3E+02 0.0072 21.1 16.0 117 6-128 48-178 (204)
79 PRK05645 lipid A biosynthesis 22.9 1.8E+02 0.0038 23.6 4.7 38 118-159 238-275 (295)
80 PRK06628 lipid A biosynthesis 22.8 1.7E+02 0.0038 23.6 4.7 21 139-159 259-279 (290)
81 PF11979 DUF3480: Domain of un 22.5 4.5E+02 0.0096 22.6 7.1 66 86-155 238-308 (356)
82 PF00028 Cadherin: Cadherin do 21.1 2.4E+02 0.0052 18.0 4.8 12 99-110 65-76 (93)
83 PF15650 Tox-REase-9: Restrict 20.7 75 0.0016 21.7 1.7 29 51-87 25-53 (89)
84 KOG2445 Nuclear pore complex c 20.6 2.6E+02 0.0055 23.9 5.2 17 109-125 305-321 (361)
85 cd08902 START_STARD4-like Lipi 20.5 4.3E+02 0.0093 20.8 13.0 138 6-153 49-200 (202)
86 PF15416 DUF4623: Domain of un 20.5 2.7E+02 0.0058 24.1 5.3 46 53-107 17-62 (442)
87 PF02115 Rho_GDI: RHO protein 20.4 4.3E+02 0.0093 20.7 9.7 63 62-125 135-197 (200)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.3e-43 Score=266.04 Aligned_cols=150 Identities=41% Similarity=0.631 Sum_probs=139.3
Q ss_pred CccEEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCc-cEEEEEeecCCcceEEEEEEeeeccCC
Q 031364 1 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPG-SIKKFNFVEGADWKYFKHRVDALDKEN 79 (161)
Q Consensus 1 M~~~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~G-siR~~~~~~g~~~~~~kErl~~iD~~~ 79 (161)
|++++++.|+++++||+++|++| ++.++++|+++|++|+|++++||||++| |||.|+|.+|++..++|||++.+|+++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~-~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAF-KSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHH-TTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHH-hcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence 99999999999999999999999 5688899999999999999999998877 999999999999999999999999999
Q ss_pred ceeEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhC
Q 031364 80 KIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 157 (161)
Q Consensus 80 ~~~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~ 157 (161)
++++|+++||+++ ..|.+|..++++.|.++|+|+++|+++|++++++.++|+. +++.+..|+|++|+||++|
T Consensus 80 ~~~~y~viEGd~l---~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~---~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 80 KTITYTVIEGDVL---GDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEK---YLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TEEEEEEEEETTG---TTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHH---HHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEecccc---ccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHH---HHHHHHHHHHHHHHHHhcC
Confidence 9999999999998 5799999999999999999999999999999998766665 5777999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=2.7e-36 Score=225.27 Aligned_cols=146 Identities=41% Similarity=0.556 Sum_probs=129.8
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccc-cccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCcee
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLP-KVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp-~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~ 82 (161)
++++.+++|+|||++||+++ +||...+| .|+| .|++|++++|+|++||||.|+|.+|++..++||||+++|+++|++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~-~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAF-VLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEEEecCCHHHHHHHH-hcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 47899999999999999999 79984355 5555 799999999999999999999998877789999999999999999
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHhh
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALA 156 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~ 156 (161)
+|++++|+++ ..+|++|+++++|.|.++++|+++|+++|++.+++.++|.. +++.+..+++++++|++.
T Consensus 79 ~y~vveg~~~--~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 79 KYTVIEGDVL--KDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEE---IKAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEEecccc--cCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHH---HHhHHHHHHHHHHHHHhc
Confidence 9999999986 23699999999999998889999999999999998666666 577888889999999875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.80 E-value=1.1e-17 Score=120.33 Aligned_cols=138 Identities=25% Similarity=0.354 Sum_probs=111.2
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEE
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
.++.+++|+||+++||+++ .|+.+ +++|+|. +.+++++++..++|+++.+.+..| ..+++++..+|+.+++++|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l-~d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALL-SDFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHH-hCcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEE
Confidence 4678899999999999999 69999 8999997 778888776556899999998765 4789999999998788999
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHH
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYA 154 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 154 (161)
++.+|+.. +.++..+++++|.++|+|.++|+..|++... .+.+..-....+.....++.|.++|
T Consensus 76 ~~~~~~~~-----~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 76 RIVEGPLP-----VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EecCCCCC-----cccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99887443 6788899999998887899999999999865 2333222234555677777887775
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.68 E-value=1.7e-14 Score=103.67 Aligned_cols=108 Identities=21% Similarity=0.398 Sum_probs=87.7
Q ss_pred cEEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCcee
Q 031364 3 VLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82 (161)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~ 82 (161)
+.+++.++.|+|||++||+++ .|+.+ +++|+|. +.++++.+++ ++|..+.+..... ..+++++..+|++++.+
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l-~d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~---~~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLL-SDPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAGR---GTVREEITEYDPEPRRI 73 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHH-TTTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECSC---SEEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEECCCHHHHHHHH-hChhh-hhhhhhc-eEEEEEcccc-ccceeEEEEeccc---cceeEEEEEecCCCcEE
Confidence 467889999999999999999 69999 9999996 7889987633 4465566664431 37999999999889999
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEe
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYP 125 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~ 125 (161)
.|++. .. ++.++..+++++|.++| |.++|+.+|++
T Consensus 74 ~~~~~-~~------~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV-PS------GFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEEE-SS------SSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEEE-ec------ceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 99996 22 35788999999999865 99999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.61 E-value=8.1e-14 Score=101.69 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=94.3
Q ss_pred EEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecC----CcceEEEEEEeeeccCCcee
Q 031364 7 NAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEG----ADWKYFKHRVDALDKENKIY 82 (161)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g----~~~~~~kErl~~iD~~~~~~ 82 (161)
..++.|++|+++||+++ .|+.+ +|+|+|+ +++++++++.+. +....+....+ .-...+..++.+.++.++.+
T Consensus 2 ~~~~~i~a~~~~Vw~~l-~D~~~-~~~w~p~-v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i 77 (144)
T cd08866 2 VARVRVPAPPETVWAVL-TDYDN-LAEFIPN-LAESRLLERNGN-RVVLEQTGKQGILFFKFEARVVLELREREEFPREL 77 (144)
T ss_pred eEEEEECCCHHHHHHHH-hChhh-HHhhCcC-ceEEEEEEcCCC-EEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceE
Confidence 57899999999999999 69999 8999997 788998876431 21111110000 00124555666667668899
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCC-CCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHHHHHHHH
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPD-GGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFKALEAYA 154 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~-g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~le~~l 154 (161)
.|++++|+ +.++.++++++|.++ |+|.++|...|++... .+...++. ..+....+++.|.+.+
T Consensus 78 ~~~~~~g~-------~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 78 DFEMVEGD-------FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred EEEEcCCc-------hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998774 468899999999988 6899999999998763 23334432 3444566677666554
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.56 E-value=3.3e-13 Score=98.26 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=83.9
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEE
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYT 85 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~ 85 (161)
+++++.|++|+++||+++ .|+.+ +|+|+|. .+++.++++++...++.+....++..... +....+|++.+++.|.
T Consensus 1 ~~~s~~i~ap~~~V~~~l-~D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~ 75 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLL-ADAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW-TSRRVLDPEGRRIVFR 75 (142)
T ss_pred CeEEEEEcCCHHHHHHHH-HhHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE-EEEEEEcCCCCEEEEE
Confidence 367899999999999999 69999 9999996 45555554332224665555532221222 4445578878889999
Q ss_pred EEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCC
Q 031364 86 AIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPG 128 (161)
Q Consensus 86 ~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 128 (161)
.+++..+ +..+.++++|+|.++++|.|+|+.+|+....
T Consensus 76 ~~~~~~~-----~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 76 QEEPPPP-----VASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred EeeCCCC-----hhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 8875443 6888899999999878899999999998854
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.53 E-value=1.9e-12 Score=93.32 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=81.5
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCC-CCCccEEEEEeecCCcceEEEEEEeeeccCCcee
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGD-GGPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGd-g~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~ 82 (161)
.+++.++.|+||+++||+++ .|+.+ +|+|+|. +.++++++++ ++.+....+++..++-.....-++. .++ .+.+
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l-~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i 76 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVL-ADVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV 76 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHH-hChhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence 46889999999999999999 69999 9999997 7889886554 3333344455543321111122222 233 6779
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCC
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKP 127 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~ 127 (161)
+|+..+|.. ...+..+++++|.++ +|.++|+.+|++..
T Consensus 77 ~~~~~~~~~------~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 77 SWTLVEGEG------NRSQEGSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred EEEEecccc------eeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence 999987753 467889999999876 79999999999865
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.50 E-value=3e-12 Score=91.71 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=83.2
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCC-CCCccEEEEEeecCCcceEEEEEEeeeccCCceeEE
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGD-GGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGd-g~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
++.++.|+||+++||+++ .|+.+ +++|.|. +.+++.+.+. .++|+...+....++..-.+++++...|+ ++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~l-~d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAYL-ADFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHHH-HCccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEE
Confidence 357889999999999999 69999 8999997 6678876544 46788888876533322457889988875 567899
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEe
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYP 125 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~ 125 (161)
....| .+ .+..++++++.++ +|.++|+.+|+.
T Consensus 77 ~~~~~-~~-------~~~~~~~~~~~~~-~t~v~~~~~~~~ 108 (140)
T cd08865 77 RGSSG-PF-------PYEDTYTFEPVGG-GTRVRYTAELEP 108 (140)
T ss_pred EecCC-Cc-------ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence 87654 22 3578899998765 699999999997
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.47 E-value=3.7e-12 Score=92.73 Aligned_cols=134 Identities=18% Similarity=0.173 Sum_probs=96.3
Q ss_pred EEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEEE
Q 031364 7 NAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTA 86 (161)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~~ 86 (161)
+.++.|++|++.||+++ .|+.+ +|+|+|+ +.+++++++++ .+....+...-++....+..++. +++ .++++++.
T Consensus 2 ~~s~~i~ap~~~v~~~i-~D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 2 SKSRLVPYSAEQMFDLV-ADVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred eEEEEcCCCHHHHHHHH-HHHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence 67899999999999999 69999 9999997 78999988765 34444455543332234445554 666 66789988
Q ss_pred EecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHHHHHHHHh
Q 031364 87 IEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFKALEAYAL 155 (161)
Q Consensus 87 ~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~le~~l~ 155 (161)
++|. ++.+.++++++|.++|+|.|+|...|++.+.. +...++. ..+....+++.+.+.+.
T Consensus 76 ~~g~-------~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l--~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 76 VDGP-------FKHLEGEWRFKPLGENACKVEFDLEFEFKSRL--LEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred cCCC-------hhhceeEEEEEECCCCCEEEEEEEEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8773 46788999999998889999999999998631 1222222 34445666666666554
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=2.9e-11 Score=86.77 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=82.3
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecC-CcceEEEEEEeeeccCCceeEE
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEG-ADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g-~~~~~~kErl~~iD~~~~~~~y 84 (161)
++.++.|+||+++||+++ .|+.+ +++|+|. +..++... .++|+...+.+..+ +......+++..+|+. +++.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~-~d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVL-TDFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHH-hcccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence 678899999999999999 69998 8999986 55554321 46787777776532 2335678888888885 46899
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeC
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPK 126 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 126 (161)
+...++.. ......++.|+|.++++|.++|+..|...
T Consensus 76 ~~~~~~~~-----~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 76 RGGLPFPG-----LLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred EecCCCCc-----EeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 98666532 23456788999986778999999888643
No 11
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.40 E-value=4.6e-11 Score=85.95 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=80.9
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEE
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
+++.++.|+||+++||+++ .|+.+ +|+|+|+ +.++++..+..++|+...++...+ ..+..++.++++.+ .+++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~-~d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~~-~~~~ 74 (138)
T cd08862 2 KFEATIVIDAPPERVWAVL-TDVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPGH-SFTW 74 (138)
T ss_pred EEEEEEEEcCCHHHHHHHH-Hhhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCCC-EEEE
Confidence 5788999999999999999 69999 9999997 778887654326787766665432 25677888888655 5787
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeC
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPK 126 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 126 (161)
+... + ...+..++.+++.++++|.++|+.+|...
T Consensus 75 ~~~~-~-------~~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 75 TGPA-P-------GISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred EecC-C-------CEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 6532 2 13446788999887679999999988753
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=7e-11 Score=82.52 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=85.7
Q ss_pred EEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCC-CCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEE
Q 031364 7 NAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGD-GGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYT 85 (161)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGd-g~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~ 85 (161)
+.++.|++|+++||+++ .|+.+ +++|+|+ +.+++..++. ...|....+.+..+ .......++..+++ +..++|+
T Consensus 2 ~~~~~i~a~~~~v~~~l-~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLL-SDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHH-hChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEE
Confidence 56889999999999999 69998 9999997 6778877654 35666666665422 22356778887777 6678999
Q ss_pred EEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCC
Q 031364 86 AIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGA 129 (161)
Q Consensus 86 ~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~ 129 (161)
...++.. ..+..++.+++.++++|.++|+.+|......
T Consensus 77 ~~~~~~~------~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 77 VTGGGGG------VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred EecCCCC------cceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence 8766542 4677899999987658999999999987643
No 13
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.34 E-value=8.4e-11 Score=85.67 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=92.1
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCC--CCCccEEEEEeec-CCcceEEEEEEeeeccCCcee
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGD--GGPGSIKKFNFVE-GADWKYFKHRVDALDKENKIY 82 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGd--g~~GsiR~~~~~~-g~~~~~~kErl~~iD~~~~~~ 82 (161)
++.++.|+||+++||+++ .|+.+ +|+|.|.... .....++ -++|+...+.... |++ ..+..++..+++..+ +
T Consensus 2 i~~~~~i~ap~e~Vw~~l-~d~~~-~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~~-l 76 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVL-ADPRR-HPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENRL-I 76 (144)
T ss_pred eEEEEEEeCCHHHHHHHH-hCccc-cceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCCE-E
Confidence 578899999999999999 69998 9999985221 2222333 3788888777653 333 346667787777665 8
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHH
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYA 154 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 154 (161)
+|+..-.+.. ......++++++.++|+|.++++..|...+...................+..|++||
T Consensus 77 ~~~~~~~~~~-----~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 77 AWRPGPAGQE-----PGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEEccCCCCC-----CCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 9985311111 234456888999877889999999998765411101111113455667788888876
No 14
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.32 E-value=1.1e-10 Score=83.98 Aligned_cols=136 Identities=17% Similarity=0.183 Sum_probs=90.0
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEE
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYT 85 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~ 85 (161)
+..++.|+||+++||+++ .|+.+ +|+|+|+ +..++.....| |+.+.+....++....+..++..+|+. +.+.|+
T Consensus 2 i~~s~~I~a~~~~Vw~~l-~d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRAL-TDPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHHc-CCHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence 678899999999999999 69998 9999996 22222211222 666655544333334678888888866 569999
Q ss_pred EEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHH
Q 031364 86 AIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYA 154 (161)
Q Consensus 86 ~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 154 (161)
...++.. +.-....+++|.|.+ ++|.++|+.+|.+.... .........+....++..|.+||
T Consensus 76 ~~~~~~~----~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 76 WAFSDET----PGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred ecccCCC----CCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence 8766531 134567888999987 57999999999875321 12222223444555556665554
No 15
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.32 E-value=2.4e-10 Score=85.08 Aligned_cols=113 Identities=19% Similarity=0.329 Sum_probs=81.9
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCC-CCccEEEEEe-ecCCcceEEEEEEeeeccCCcee
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDG-GPGSIKKFNF-VEGADWKYFKHRVDALDKENKIY 82 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg-~~GsiR~~~~-~~g~~~~~~kErl~~iD~~~~~~ 82 (161)
..+++++|++||++||+++ .|..+ +|.|+|. +.++++++.++ +.|+.-++.+ ..|...++..|+. +|...+++
T Consensus 2 ~~~~si~i~a~~~~v~~lv-aDv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~--~~~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMT-NDIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERT--LDPVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHHH-Hhhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEE--ecCCCcEE
Confidence 4678999999999999999 69999 9999997 77888887653 4553222233 2333323334433 68888888
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCC
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGA 129 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~ 129 (161)
.++-. .+. ++.+....++|+|.++| |.|++..+|+-.++.
T Consensus 77 ~~~~~-~~~-----p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~ 116 (146)
T cd08860 77 RARRV-ETG-----PFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA 116 (146)
T ss_pred EEEEe-cCC-----CcceeeeeEEEEECCCC-EEEEEEEEEEECCCC
Confidence 87421 112 37889999999998664 999999999987654
No 16
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.27 E-value=4e-10 Score=81.48 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=76.1
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEE
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
.++.++.+++|+++||+++ .|+.+ +++|+|+ +.+++.++++ .......+.+.+.+..-..+-++..+|+. +.+.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l-~D~~~-~~~w~p~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 76 (144)
T cd05018 2 KISGEFRIPAPPEEVWAAL-NDPEV-LARCIPG-CESLEKIGPN-EYEATVKLKVGPVKGTFKGKVELSDLDPP-ESYTI 76 (144)
T ss_pred eeeeEEEecCCHHHHHHHh-cCHHH-HHhhccc-hhhccccCCC-eEEEEEEEEEccEEEEEEEEEEEEecCCC-cEEEE
Confidence 4678999999999999999 69999 9999997 6677766532 11111122221111111224555555544 56777
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCC
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPG 128 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 128 (161)
+....+.. ....+..++.++|. +++|.++|+.+|+..+.
T Consensus 77 ~~~~~~~~----~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 77 TGEGKGGA----GFVKGTARVTLEPD-GGGTRLTYTADAQVGGK 115 (144)
T ss_pred EEEEcCCC----ceEEEEEEEEEEec-CCcEEEEEEEEEEEccC
Confidence 76433321 24688999999998 67899999999997654
No 17
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.26 E-value=8e-10 Score=81.10 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=81.3
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCccee--eEEE--ecCCCCCccEEEEEeecCCcceEEEEEEeeeccCC
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVK--NVEL--ISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKEN 79 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~--s~e~--~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~ 79 (161)
.+++.++.|++|+++||+++ .|+.+ +|+|+|.+.. .++. .+++.++|+...++...+. .....++..+++ +
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i-~D~~~-~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~ 76 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYV-NDLKN-WPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-N 76 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHH-hCccc-CcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-C
Confidence 36789999999999999999 69999 9999995321 1221 1233478888777655421 134456666665 5
Q ss_pred ceeEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCC
Q 031364 80 KIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKP 127 (161)
Q Consensus 80 ~~~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~ 127 (161)
+++.|+...++.+ + -++..++.++|. +++|.++|+.+|+...
T Consensus 77 ~~i~~~~~~~~~~----~-~~~~~~~~~~~~-~~gT~v~~~~~~~~~~ 118 (150)
T cd07818 77 ERIEYELRFIKPF----E-ATNDVEFTLEPV-GGGTKVTWGMSGELPF 118 (150)
T ss_pred cEEEEEEEecCCc----c-ccceEEEEEEEc-CCceEEEEEEEecCCc
Confidence 6699998765443 1 366789999999 5579999999998654
No 18
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.23 E-value=7.3e-10 Score=79.76 Aligned_cols=108 Identities=20% Similarity=0.353 Sum_probs=77.7
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEE
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
+++.++.|+||+++||+++ .|+.+ +|+|.|+ +.+++++.+. +....+.+..|.. ..+..++..+++ ++.+.|
T Consensus 1 ~v~~~i~I~ap~e~V~~~~-~D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~ 72 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFW-RDFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAW 72 (139)
T ss_pred CeeEEEEeCCCHHHHHHHH-hChhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEE
Confidence 3678999999999999999 69999 9999997 7788876541 2222233332332 455666655455 445899
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCC
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPG 128 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 128 (161)
....|. + .+..++.+++.++++|.+++++.|++...
T Consensus 73 ~~~~~~-------~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 73 RSVEGA-------D-PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred EECCCC-------C-CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 875542 2 45688889998777899999999998753
No 19
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.19 E-value=1.8e-09 Score=77.35 Aligned_cols=107 Identities=20% Similarity=0.441 Sum_probs=75.4
Q ss_pred EcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEEEEecCC
Q 031364 12 STLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEG 91 (161)
Q Consensus 12 i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~~~eg~~ 91 (161)
|+||+++||+++ .|+.+ +|+|+|. ++++++++.++. +..-.+....++....+..++.. +.... +.+..++|+
T Consensus 1 V~ap~~~V~~~i-~D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g~- 73 (130)
T PF03364_consen 1 VNAPPEEVWSVI-TDYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTE-DPPER-IRFEQISGP- 73 (130)
T ss_dssp ESS-HHHHHHHH-TTGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEE-ECTTT-EEEESSETT-
T ss_pred CCCCHHHHHHHH-HHHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEE-EEeee-eeeeecCCC-
Confidence 789999999999 69999 9999997 788999987654 33334555543332445556553 44444 777776664
Q ss_pred CCCCCCccEEEEEEEEEEeCC--CCeeEEEEEEEEeCCCCCC
Q 031364 92 DANIPTIDHVSYESKVVGTPD--GGSKSTVVIKFYPKPGAEI 131 (161)
Q Consensus 92 ~~~~~~~~~y~~t~~v~~~~~--g~s~v~W~~~y~~~~~~~~ 131 (161)
++.+..+++++|.++ |+|.++++.+|+.......
T Consensus 74 ------~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~ 109 (130)
T PF03364_consen 74 ------FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPL 109 (130)
T ss_dssp ------EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSS
T ss_pred ------chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHh
Confidence 689999999999875 3677777777776544333
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.16 E-value=1.4e-09 Score=79.30 Aligned_cols=109 Identities=11% Similarity=0.168 Sum_probs=82.4
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCC-C--CCccEEEEEeecCCcceEEEEEEeeeccCCcee
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGD-G--GPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGd-g--~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~ 82 (161)
++.++.|+||+++||+.+ .|..+ +|+|+|+ +.++++++.+ | .+|+.-.+.+..++-.-..+-++..+++ ++.+
T Consensus 1 ~~~s~~I~ap~e~V~~~~-~d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p-~~~f 76 (137)
T cd07820 1 LERSTVIPAPIEEVFDFH-SRPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEP-PRRF 76 (137)
T ss_pred CeEEEEcCCCHHHHHHHH-cCcch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcC-CCeE
Confidence 467899999999999999 69999 9999998 6688887433 2 4678888877654422344566666554 4558
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeC
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPK 126 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 126 (161)
+.+...|. +..+..+..++|.++ +|.+++.++|+..
T Consensus 77 ~~~~~~G~-------~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 77 VDEQVSGP-------FRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEEeccCC-------chhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 88877654 456777889998765 6999999999973
No 21
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.15 E-value=6.3e-09 Score=76.62 Aligned_cols=109 Identities=14% Similarity=0.216 Sum_probs=77.3
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEec--CCCCCccEEEEEeecCCc-ceEEEEEEeeeccCCce
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELIS--GDGGPGSIKKFNFVEGAD-WKYFKHRVDALDKENKI 81 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~e--Gdg~~GsiR~~~~~~g~~-~~~~kErl~~iD~~~~~ 81 (161)
.++.+..|+||+++||+++ .|+.+ +|+|+|+ +.++++++ ++.++|+..++......+ ...+.-++... +..+.
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~-tD~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~ 77 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVL-VDAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSL 77 (146)
T ss_pred cceEEEEecCCHHHHHHHH-hChhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcE
Confidence 3567889999999999999 69998 9999997 78888886 334677765554332211 12344455544 45567
Q ss_pred eEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCC
Q 031364 82 YNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKP 127 (161)
Q Consensus 82 ~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~ 127 (161)
++|+. +|+.. ...+++|++.+ ++|.++++.+++..+
T Consensus 78 ~~~~~-~g~~~--------~~~~~~~~~~~-~gt~vt~~~~~~~~~ 113 (146)
T cd07824 78 LEVRA-SGDLE--------GVGRWTLAPDG-SGTVVRYDWEVRTTK 113 (146)
T ss_pred EEEEE-EEeee--------EEEEEEEEEcC-CCEEEEEEEEEEcCH
Confidence 88885 56532 25788998865 469999999999754
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.09 E-value=6.5e-09 Score=76.52 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=80.7
Q ss_pred EEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEE--EEEEeeeccCCceeEE
Q 031364 7 NAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYF--KHRVDALDKENKIYNY 84 (161)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~--kErl~~iD~~~~~~~y 84 (161)
+.+++|++|+++||+++ .|+.+ ++.|+|+ +++++..+ ++.. .-.+++.-|+-...+ +=++..++++.+++.+
T Consensus 2 ~~~~~v~a~pe~vw~~l-~D~~~-~~~~~pg-~~~~~~~~-~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 75 (146)
T cd07823 2 ENEFTVPAPPDRVWALL-LDIER-VAPCLPG-ASLTEVEG-DDEY--KGTVKVKLGPISASFKGTARLLEDDEAARRAVL 75 (146)
T ss_pred CceEEecCCHHHHHHHh-cCHHH-HHhcCCC-ceeccccC-CCeE--EEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence 56889999999999999 69998 8999997 77776543 2221 122333222111122 1245555557777887
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCC-CCChhhhhh-hHHHHHHHHHHHHHH
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGA-EIKEEQVKG-GLEKEKGIFKALEAY 153 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~-~~~~~~~~~-~~~~~~~~~k~le~~ 153 (161)
+.-..+.. ...--....++++.| .+++|.++|+.+++..+.. ......++. ..+.+..+++.|.+.
T Consensus 76 ~~~g~~~~--~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~ 143 (146)
T cd07823 76 EATGKDAR--GQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEAR 143 (146)
T ss_pred EEEEecCC--CcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 75421111 011124567788888 4568999999999866542 223333332 333344555555544
No 23
>PRK10724 hypothetical protein; Provisional
Probab=99.09 E-value=1e-08 Score=77.52 Aligned_cols=134 Identities=12% Similarity=0.139 Sum_probs=92.8
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeE
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYN 83 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~ 83 (161)
-.+..++.+++|++++|+++ .|..+ +|+|+|. ..++++++.++. +.+..++.+-++-......|.. +++.+ ++.
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv-~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~ 88 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLV-NDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SIL 88 (158)
T ss_pred CeEEEEEEecCCHHHHHHHH-HHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEE
Confidence 36788899999999999999 69999 9999997 557777765432 2344455443332345555654 45544 799
Q ss_pred EEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhh-hhHHHHHHHHHHHHH
Q 031364 84 YTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVK-GGLEKEKGIFKALEA 152 (161)
Q Consensus 84 y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~le~ 152 (161)
+++++|+ ++++.+.++|+|.++++|.|++..+|+..... ....++ ...+.+..|.+++++
T Consensus 89 ~~~~~Gp-------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~l--~~~~~~~~~~~~~~~mv~AF~~ 149 (158)
T PRK10724 89 MQLVDGP-------FKKLIGGWKFTPLSQEACRIEFHLDFEFTNKL--IELAFGRVFKELASNMVQAFTV 149 (158)
T ss_pred EEecCCC-------hhhccceEEEEECCCCCEEEEEEEEEEEchHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9998873 57889999999988778999999999976521 111111 133444555555555
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.97 E-value=2.2e-08 Score=74.50 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=97.1
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEE
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
.++.+..|++|+++||+.+ .|+.. +...+|+ ++|++. +|+.-. +.-.+.+.+=...-.-+=++..+|+..++++.
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L-~dpe~-~a~ciPG-~qs~e~-~g~e~~-~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i 76 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFL-NDPEQ-VAACIPG-VQSVET-NGDEYT-AKVKLKIGPLKGTFSGRVRFVNVDEPPRSITI 76 (146)
T ss_pred cccceEEecCCHHHHHHHh-cCHHH-HHhhcCC-cceeee-cCCeEE-EEEEEeecceeEEEEEEEEEccccCCCcEEEE
Confidence 3567889999999999999 69998 7899998 899984 465211 12222222111112234466667888898888
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCC-CCCChhhhh-hhHHHHHHHHHHHHHHHhh
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPG-AEIKEEQVK-GGLEKEKGIFKALEAYALA 156 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~-~~~~~~~~~-~~~~~~~~~~k~le~~l~~ 156 (161)
+.-.|.. ..+-+.+..+.++|.++| |++.|.+.-+-.+. ...-++.++ ...+.+..++..|.++|.+
T Consensus 77 ~g~G~~~----~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 77 NGSGGGA----AGFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred Eeecccc----cceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7754332 456778888899998776 99999999887654 334445554 3556667788888887754
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.81 E-value=4e-07 Score=67.02 Aligned_cols=136 Identities=16% Similarity=0.156 Sum_probs=78.9
Q ss_pred EEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEEEEe
Q 031364 9 EETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIE 88 (161)
Q Consensus 9 e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~~~e 88 (161)
+.+|++|+++||+++ .|... +-+.+|+ +++++.+. +.--+.++ +.+++=...-..+=++..+|+.++.. .++-.
T Consensus 2 s~~v~a~~~~vw~~l-~D~~~-l~~ciPG-~~~~e~~~-~~~~~~~~-v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~~g 75 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFL-SDPEN-LARCIPG-VESIEKVG-DEYKGKVK-VKVGPIKGTFDGEVRITEIDPPESYT-LEFEG 75 (140)
T ss_dssp EEEECS-HHHHHHHH-T-HHH-HHHHSTT-EEEEEEEC-TEEEEEEE-EESCCCEEEEEEEEEEEEEETTTEEE-EEEEE
T ss_pred cEEecCCHHHHHHHh-cCHHH-HHhhCCC-cEEeeecC-cEEEEEEE-EEeccEEEEEEEEEEEEEcCCCcceE-eeeec
Confidence 578999999999999 79998 8899998 78888765 41111111 22211000112333555567776642 33322
Q ss_pred cCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCC-CCCChhhhhh-hHHHHHHHHHHHHHHH
Q 031364 89 GEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPG-AEIKEEQVKG-GLEKEKGIFKALEAYA 154 (161)
Q Consensus 89 g~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~-~~~~~~~~~~-~~~~~~~~~k~le~~l 154 (161)
.+.. .-.+..+.+++...++++|.+.|+++++-.+- .......++. ..+....+++.|++.|
T Consensus 76 ~g~~----~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 76 RGRG----GGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EECT----CCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCc----cceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 13455667777776666699999999997664 3444444442 3344455666666543
No 26
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.74 E-value=3.2e-07 Score=66.51 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=80.6
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEE
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
+++.++.|+||+++||+++ .|+.. +++|+|... .....|.+..| .+.+..+ ......-++..+++.++ +.|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~-td~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~-~~~~~~~~i~~~~p~~~-l~~ 72 (145)
T cd08898 2 RIERTILIDAPRERVWRAL-TDPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGY-EHGVFPVTVVEVDPPRR-FSF 72 (145)
T ss_pred eeEEEEEecCCHHHHHHHh-cChhh-hhhcccccC--CCcccCCccee---EEecCCC-CccceEEEEEEeCCCcE-EEE
Confidence 5788999999999999999 59998 899998632 11111222222 2333321 11134456666666555 788
Q ss_pred EEEecCC---CCCCCCccEEEEEEEEEEeCCCCeeEEEEEE-EEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHh
Q 031364 85 TAIEGEG---DANIPTIDHVSYESKVVGTPDGGSKSTVVIK-FYPKPGAEIKEEQVKGGLEKEKGIFKALEAYAL 155 (161)
Q Consensus 85 ~~~eg~~---~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~-y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 155 (161)
+...... .. ...-.....+++|++.+ ++|.++++.. |...++... ........+....++..|++||-
T Consensus 73 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~-~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 73 RWHPPAIDPGED-YSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERR-AEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EecCCCcccccc-cCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHH-HHHHHhhhhhHHHHHHHHHHHhc
Confidence 8643320 00 00122345788888875 5699999876 433221110 11122245566788888988885
No 27
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.72 E-value=6.5e-07 Score=66.92 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=86.7
Q ss_pred cEEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCcee
Q 031364 3 VLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIY 82 (161)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~ 82 (161)
..++..++.|+||+++||+++ .|+.+ +++|+|.. ..+-.+|...++.+...+ ......++..+|+.+ .+
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~~-~~~~~~~v~e~~p~~-~l 78 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAAL-TDPER-LARWFAPG-------TGDLRVGGRVEFVMDDEE-GPNATGTILACEPPR-LL 78 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHH-cCHHH-HHhhcCCC-------CCCcccCceEEEEecCCC-CCccceEEEEEcCCc-EE
Confidence 357899999999999999999 59998 89999842 123345655566554311 124566777777765 57
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCC
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 158 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~ 158 (161)
.|+...++ . ....++.|++.+ |+|.++.+.++.+... ......++...++..|.+||-+.+
T Consensus 79 ~~~~~~~~-~-------~~~~~~~l~~~~-~gT~v~~~~~~~~~~~------~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 79 AFTWGEGG-G-------ESEVRFELAPEG-DGTRLTLTHRLLDERF------GAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEEecCCC-C-------CceEEEEEEEcC-CCEEEEEEEeccCchh------hhhhhcccHHHHHHHHHHHHcCCC
Confidence 88875333 2 224577788765 6799988888865431 111134566778888888887654
No 28
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.57 E-value=1.2e-05 Score=58.74 Aligned_cols=137 Identities=15% Similarity=0.069 Sum_probs=80.5
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCc-ceeeEEEecCCCCCccEEEEEee-cCCcceEEEEEEeeeccCCceeE
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQ-VVKNVELISGDGGPGSIKKFNFV-EGADWKYFKHRVDALDKENKIYN 83 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~-~v~s~e~~eGdg~~GsiR~~~~~-~g~~~~~~kErl~~iD~~~~~~~ 83 (161)
+..+..++||+++||+++ .|... +.+|+.. ---.++..+.|-.+|..-.+.+. .++......=++.++|+.++ +.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~-tdp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~-l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAW-SDPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDER-IV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHh-cCHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCce-EE
Confidence 455677999999999999 58887 7888753 11123333344344544444333 23322233446666777665 66
Q ss_pred EEEE--ecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHh
Q 031364 84 YTAI--EGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYAL 155 (161)
Q Consensus 84 y~~~--eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 155 (161)
|+-. .++.. ......++.+++.+ |+|.++.+..+-..++. +...........++..|++||-
T Consensus 79 ~t~~~~~~~~~-----~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 79 YTYTMHIGGTL-----LSASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEeeccCCcc-----ccceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence 6642 22221 12234688888875 67999988776433221 1122245667788899998874
No 29
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.54 E-value=8.9e-07 Score=67.85 Aligned_cols=108 Identities=13% Similarity=0.339 Sum_probs=82.3
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEee--cCCcceEEEEEEeeeccCCce
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV--EGADWKYFKHRVDALDKENKI 81 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~--~g~~~~~~kErl~~iD~~~~~ 81 (161)
..++.+++|+.|++.||... +|+.+ +|.|+-+ +.|+++.+... -+|+.. .|..+++ +-+|. -|..+..
T Consensus 70 i~v~~~V~I~kPae~vy~~W-~dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v~W-ea~it-~d~~~e~ 139 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYW-RDLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEVEW-EAEIT-KDIPGER 139 (217)
T ss_pred eEEEEEEEeCChHHHHHHHH-Hhhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceEEE-eehhh-ccCCCcE
Confidence 56789999999999999999 79999 9999986 99999876542 345443 3443343 34444 5899999
Q ss_pred eEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCC
Q 031364 82 YNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPG 128 (161)
Q Consensus 82 ~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 128 (161)
|.++=++|--+. + +..++|.+.++..|.|+.+..|.+-++
T Consensus 140 I~W~Sl~Ga~v~------N-sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 140 IQWESLPGARVE------N-SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred EeeecCCCCcCC------C-CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 999999996542 1 356788888766789999999987554
No 30
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.53 E-value=6e-06 Score=60.60 Aligned_cols=140 Identities=9% Similarity=0.003 Sum_probs=81.2
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEee-cCCcceEEEEEEeeeccCCceeEE
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV-EGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~-~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
+..+..++||+++||+++ .|... +.+|++..--.+...+.|-.+|..-.+.+. +++....+.=++.++|+.++ +.|
T Consensus 2 l~i~r~~~ap~e~Vw~a~-Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~-l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAH-TDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPER-IVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHh-CCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCCE-EEE
Confidence 566778999999999999 58886 788865432223333445445555445443 23222233445666776654 566
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHhh
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALA 156 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~ 156 (161)
+---.+.. -.....++.+.+.+ |+|.++.+..|...... .........++....+..|++||.+
T Consensus 79 t~~~~~~~-----~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~~--~~~~~~~~~~Gw~~~l~~L~~~l~~ 142 (142)
T cd07826 79 TEEFEGLP-----DGVALETVTFTELG-GRTRLTATSRYPSKEAR--DGVLASGMEEGMEESYDRLDELLAS 142 (142)
T ss_pred EeEecCCC-----CCceEEEEEEEECC-CCEEEEEEEEeCCHHHH--HHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 53222211 12345688888875 67999988666321100 0011112455667889999999863
No 31
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.51 E-value=1.6e-05 Score=58.35 Aligned_cols=136 Identities=19% Similarity=0.211 Sum_probs=80.0
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCc-ceeeEEEecCCCCCccEEEEEe--ec------CCcceEEEEEEeee
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQ-VVKNVELISGDGGPGSIKKFNF--VE------GADWKYFKHRVDAL 75 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~-~v~s~e~~eGdg~~GsiR~~~~--~~------g~~~~~~kErl~~i 75 (161)
++..+..|+||+++||+++ .|... +.+|++. -+ .+...+.+-.+|-.-.+.+ .. .+......=++.++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~-td~~~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v 77 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAF-LDPDA-LAKWLPPDGM-TGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL 77 (146)
T ss_pred CEEEEEEECCCHHHHHHHH-cCHHH-HhhcCCCCCe-EeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence 3566778999999999999 59987 8888753 22 2222233323333333322 22 11112344467778
Q ss_pred ccCCceeEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHh
Q 031364 76 DKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYAL 155 (161)
Q Consensus 76 D~~~~~~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 155 (161)
++.++ +.|+..-.+.. .+ .....++.+++.+ |+|.++++...-+.. . ... ...+....++..|++||-
T Consensus 78 ~p~~~-i~~~~~~~~~~---~~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~--~-~~~---~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNER-IVYTDVFDDPS---LS-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG--I-PPE---DCELGWQESLANLAALVE 145 (146)
T ss_pred cCCCE-EEEEEEecCCC---CC-ceEEEEEEEEecC-CCEEEEEEEeCCCch--h-hhh---HHHHHHHHHHHHHHHHhc
Confidence 77765 77775322221 11 2346788888875 679998888643211 1 111 245677888889998874
No 32
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.50 E-value=8.9e-06 Score=58.11 Aligned_cols=134 Identities=12% Similarity=0.008 Sum_probs=77.9
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEE
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
++..++.|+||+++||+++ .|... +++|.+... .+++-.+|.--.+....... ..+.=++.++++ ++.+.|
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~-td~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~~-~~~l~~ 71 (136)
T cd08893 1 KFVYVTYIRATPEKVWQAL-TDPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEGEVLESDP-PRRLVH 71 (136)
T ss_pred CeEEEEEecCCHHHHHHHH-cCchh-hhheecccc-----cccCCcCCCeEEEEeCCCcc-cccceEEEEecC-CCeEEE
Confidence 4678999999999999999 59998 899987622 12333444433343332111 123445666664 445777
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHH
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYA 154 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 154 (161)
+...+.... ...-.....++.+++.+ ++|.++.+.+-...+ +.......+....+++.|.+||
T Consensus 72 ~~~~~~~~~-~~~~~~~~v~~~l~~~~-~~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 72 TWRAVWDPE-MAAEPPSRVTFEIEPVG-DVVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEecCCCcc-cCCCCCEEEEEEEEecC-CcEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHh
Confidence 764332210 01123456778888865 467777665543222 1122223455677888888876
No 33
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.45 E-value=8.3e-06 Score=59.45 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=77.4
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccC-cceeeEEEecCCCCCccEEEEEe-ecCCcceEEEEEEeeeccCCceeE
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLP-QVVKNVELISGDGGPGSIKKFNF-VEGADWKYFKHRVDALDKENKIYN 83 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P-~~v~s~e~~eGdg~~GsiR~~~~-~~g~~~~~~kErl~~iD~~~~~~~ 83 (161)
+..+..++||+++||+++ .|... +.+|++ +-+. +...+.|..+|..-.+.+ .+++..-...=++.++++.++ +.
T Consensus 2 l~~~r~i~ap~e~Vw~a~-t~p~~-l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~~-l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAW-TDPEH-LAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPER-IV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHh-CCHHH-HhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCCE-EE
Confidence 566788999999999999 58886 788864 3222 211223333444434333 222221122346777777665 78
Q ss_pred EEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhh-hhhHHHHHHHHHHHHHHHh
Q 031364 84 YTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQV-KGGLEKEKGIFKALEAYAL 155 (161)
Q Consensus 84 y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l~ 155 (161)
|+.-.++ . ....++.++|.+ |+|.++.+..|..... -...+ ....+....++..|++||.
T Consensus 78 ~t~~~~~-~-------~~~v~~~~~~~~-~gT~ltl~~~~~~~~~---~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 78 YDHGSGP-P-------RFRLTVTFEEQG-GKTRLTWRQVFPTAAE---RCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEeccCC-C-------cEEEEEEEEECC-CCEEEEEEEEcCCHHH---HHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 8763331 1 235678888875 6899998876532110 00011 1134556778888888874
No 34
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.39 E-value=2e-05 Score=57.93 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=76.0
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEe-ecCCcceEEEEEEeeeccCCceeEE
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNF-VEGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~-~~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
+..+..++||+++||+++ .|... +.+|++..=-++...+.|-.+|..-.+.+ .+++..-...=++.++|+.++ +.|
T Consensus 2 l~i~r~i~a~~e~Vw~a~-t~pe~-~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~-l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAW-TEPEL-LKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGER-LVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHc-CCHHH-HhccCCCCCccceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCCE-EEE
Confidence 456788999999999999 58886 77886531001111222322333333433 233321223456777887766 666
Q ss_pred EE--EecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhh-hhHHHHHHHHHHHHHHHh
Q 031364 85 TA--IEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVK-GGLEKEKGIFKALEAYAL 155 (161)
Q Consensus 85 ~~--~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~ 155 (161)
+- .++.... ..+ ....++.+++.+ ++|.++.+..+.... ..+.... ...++...++..|++||.
T Consensus 79 t~~~~~~~~~~-~~~--~~~v~~~~~~~~-~gT~Ltl~~~~~~~~---~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPA-EKP--FMTAIITFEDEG-GGTRYTARARHWTEA---DRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCC-CCC--cEEEEEEEEecC-CcEEEEEEEEeCCHH---HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 63 2221110 111 135678888864 679998875542210 0010110 123566788899999885
No 35
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.37 E-value=0.0001 Score=56.58 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=86.9
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCc---ceEEEEEEeeeccCCc
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGAD---WKYFKHRVDALDKENK 80 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~---~~~~kErl~~iD~~~~ 80 (161)
..+..+..|++||+++|+++ .|... .|+|.|. +.++++++..+.--.+-.+.+....+ ...+-.+-...+.++.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi-~d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALL-RDTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHH-hhhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 56788889999999999999 69998 8999996 77888887653211222233322111 1122221112222233
Q ss_pred eeEEEEEecCC--CCCCCC---ccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHHHHHHHH
Q 031364 81 IYNYTAIEGEG--DANIPT---IDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFKALEAYA 154 (161)
Q Consensus 81 ~~~y~~~eg~~--~~~~~~---~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~le~~l 154 (161)
.+......++. +. ... ...+.+.+.++|.++++|.+++...+++.+. .|...++. .......++++|.+.+
T Consensus 118 ~~~i~~~s~~~~~P~-~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 118 SVTITLEAAPEALPE-QKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEEeecCCccCCC-CCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444433322 10 011 3566777889998888899999999998753 33444443 3334456677776653
No 36
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.34 E-value=2.2e-05 Score=56.77 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=75.9
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCccee-eEEEecCCCCCccEEEEEee-c-CCcceEEEEEEeeeccCCce
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVK-NVELISGDGGPGSIKKFNFV-E-GADWKYFKHRVDALDKENKI 81 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~-s~e~~eGdg~~GsiR~~~~~-~-g~~~~~~kErl~~iD~~~~~ 81 (161)
++..++.++||+++||+++ .|... +.+|++..-. .+...+.|-.+|..-.+.+. . |.....+.=++..+++.++
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~-td~e~-~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~~- 77 (133)
T cd08897 1 KITVETTVDAPIEKVWEAW-TTPEH-ITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHKL- 77 (133)
T ss_pred CEEEEEEeCCCHHHHHHHh-CCHHH-HhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCCE-
Confidence 4677889999999999999 58887 8899542100 11112234345544444332 2 2211123345556666655
Q ss_pred eEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHh
Q 031364 82 YNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYAL 155 (161)
Q Consensus 82 ~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 155 (161)
+.|+..++ ...++.+++.+ |+|.++.+ +...+.. ..+. ...+...++..|++||-
T Consensus 78 l~~~~~~~-----------~~v~~~l~~~~-~gT~l~l~--~~~~~~~--~~~~---~~~GW~~~l~~L~~~le 132 (133)
T cd08897 78 IEYTMEDG-----------REVEVEFTEEG-DGTKVVET--FDAENEN--PVEM---QRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEcCCC-----------CEEEEEEEECC-CCEEEEEE--ECCCCCC--cHHH---HHHHHHHHHHHHHHHhh
Confidence 78886321 14688888865 67888865 4433211 1122 35666788889999884
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.26 E-value=9.3e-05 Score=54.50 Aligned_cols=138 Identities=14% Similarity=0.080 Sum_probs=75.3
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcce-------eeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccC
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVV-------KNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKE 78 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v-------~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~ 78 (161)
+..++.|+||+++||+++. | . +.+|++..- ..|++. -.+|....+...+|. ....=++.++|+.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t-~--~-l~~W~~p~~~~~~~~~~~~~~d---~~~GG~~~~~~~~g~--~~~~g~v~~v~p~ 72 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT-E--G-FGAWWPPEYHFVFSPGAEVVFE---PRAGGRWYEIGEDGT--ECEWGTVLAWEPP 72 (149)
T ss_pred eEEEEEecCCHHHHHHHHH-h--c-hhhccCCCcccccCCCccEEEc---ccCCcEEEEecCCCc--EeceEEEEEEcCC
Confidence 5788999999999999994 6 3 567754211 233321 123322222222222 2233467777777
Q ss_pred CceeEEEEE-ecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCC-CChhhhhhhHHHHHHHHHHHHHHHh
Q 031364 79 NKIYNYTAI-EGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAE-IKEEQVKGGLEKEKGIFKALEAYAL 155 (161)
Q Consensus 79 ~~~~~y~~~-eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~-~~~~~~~~~~~~~~~~~k~le~~l~ 155 (161)
++ +.|+-. ..+... .... .-..++.+++.++++|.++.+..+....... ...........+...++..|++||-
T Consensus 73 ~~-l~~tw~~~~~~~~-~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 73 SR-LVFTWQINADWRP-DPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred CE-EEEEeccCCCcCc-CCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 66 667653 111110 0111 2357888888764679999888875432110 0011111234456778888888874
No 38
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.12 E-value=9.2e-05 Score=52.04 Aligned_cols=121 Identities=14% Similarity=0.221 Sum_probs=70.9
Q ss_pred cCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCc-cEEEEEeecCCcceEEEEEEeeeccCCceeEEEEEecCC
Q 031364 13 TLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPG-SIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEG 91 (161)
Q Consensus 13 ~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~G-siR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~~~eg~~ 91 (161)
+||+++||+++ .+... +.+|.+......+. .+| +++... +++......=++.++++.++ +.|+.--++.
T Consensus 1 ~ap~e~Vw~a~-t~~~~-~~~W~~~~~~~~~~-----~~Gg~~~~~~--~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~ 70 (124)
T PF08327_consen 1 DAPPERVWEAL-TDPEG-LAQWFTTSEAEMDF-----RPGGSFRFMD--PDGGEFGFDGTVLEVEPPER-IVFTWRMPDD 70 (124)
T ss_dssp SSSHHHHHHHH-HSHHH-HHHHSEEEEEEEEC-----STTEEEEEEE--TTSEEEEEEEEEEEEETTTE-EEEEEEEETS
T ss_pred CcCHHHHHHHH-CCHhH-HhhccCCCcceeee-----ecCCEEEEEe--cCCCCceeeEEEEEEeCCEE-EEEEEEccCC
Confidence 69999999999 58887 88993221222222 334 444422 33332233334777777766 7787543433
Q ss_pred CCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHHHHHHHH
Q 031364 92 DANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFKALEAYA 154 (161)
Q Consensus 92 ~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~le~~l 154 (161)
. +-.....++.|++ .+++|.++.+..=.+. ...... ...+...++..|.+||
T Consensus 71 ~----~~~~~~v~~~~~~-~~~~T~l~~~~~~~~~------~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 71 P----DGPESRVTFEFEE-EGGGTRLTLTHSGFPD------DDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp S----SCEEEEEEEEEEE-ETTEEEEEEEEEEEHS------HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred C----CCCceEEEEEEEE-cCCcEEEEEEEEcCCc------cHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 1234567888888 4567888877732221 222222 4556677778888876
No 39
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00051 Score=51.13 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=76.7
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeE
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYN 83 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~ 83 (161)
.++..+..|++|+++||+++ .|... +.+|+..--.+.++.-|. +....+....| +.....-+..++++..| |.
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~-Tdpe~-l~~W~~~~~~~~d~r~gg---~~~~~~~~~~g-~~~~~~~~~~~v~p~~r-Iv 80 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEAL-TDPEL-LARWFMPGGAEFDARTGG---GERVRFRGPDG-PVHSFEGEYLEVVPPER-IV 80 (149)
T ss_pred ceEEEEEeecCCHHHHHHHh-cCHHH-HHhhcCCCCCccceecCC---ceEEeeecCCC-CeeecceEEEEEcCCcE-EE
Confidence 57888999999999999999 58886 899976211111111121 22333443333 22344556666766665 56
Q ss_pred EEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhh--HHHHHHHHHHHHHHHh
Q 031364 84 YTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGG--LEKEKGIFKALEAYAL 155 (161)
Q Consensus 84 y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~--~~~~~~~~k~le~~l~ 155 (161)
|+-...+.. .+...-..++++++..+|+ +++..........+.....+.. .+....++..++++|.
T Consensus 81 ~tw~~~~~~---~~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 81 FTWDFDEDG---EPFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEeccCCCC---CcccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 665433322 1222335677888876653 3333333333222222222222 5667788888888774
No 40
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.97 E-value=0.00025 Score=51.49 Aligned_cols=129 Identities=15% Similarity=0.107 Sum_probs=76.6
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEE
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYT 85 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~ 85 (161)
+..++.++||+++||+++ .|... +.+|++. -.+.++. +|..-.+.+...++ .+.=++.++++.. ++.|+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~-t~p~~-l~~W~~~-~~~~~~~-----~Gg~~~~~~~~~~~--~~~g~~~~~~p~~-~l~~~ 70 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAF-VDPEI-TTKFWFT-GSSGRLE-----EGKTVTWDWEMYGA--SVPVNVLEIEPNK-RIVIE 70 (136)
T ss_pred eeEEEEecCCHHHHHHHh-cCHHH-hcccccc-CCCcccc-----CCCEEEEEEEccCC--ceEEEEEEEcCCC-EEEEE
Confidence 467899999999999999 58887 7887543 2233332 33333455543222 1222556676554 47787
Q ss_pred EEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhh---hhHHHHHHHHHHHHHHHhhC
Q 031364 86 AIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVK---GGLEKEKGIFKALEAYALAN 157 (161)
Q Consensus 86 ~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~---~~~~~~~~~~k~le~~l~~~ 157 (161)
--.++ +.+ ..++.+.+.++|+|.++.+...-+.. .++..+ ....+...++..|++||..-
T Consensus 71 w~~~~------~~s--~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 71 WGDPG------EPT--TVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred ecCCC------CCE--EEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 63221 122 46888888765788888775543321 111111 12345577888898888653
No 41
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.94 E-value=0.00011 Score=54.62 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=82.4
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEE
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNY 84 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y 84 (161)
.+++..-+.-+|+++|+++ .|... .|+.+|... ...+.+.++. ..+-.++.+-++-.+++.-|.. +++..++|.-
T Consensus 3 ~~~~s~lv~y~a~~mF~LV-~dV~~-YP~FlP~C~-~s~v~~~~~~-~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~ 77 (146)
T COG2867 3 QIERTALVPYSASQMFDLV-NDVES-YPEFLPWCS-ASRVLERNER-ELIAELDVGFKGIRETFTTRVT-LKPTARSIDM 77 (146)
T ss_pred eeEeeeeccCCHHHHHHHH-HHHHh-Cchhccccc-cceEeccCcc-eeEEEEEEEhhheeeeeeeeee-ecCchhhhhh
Confidence 5677888999999999999 69999 999999754 4556666532 2444555543332245555544 5566657777
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCC
Q 031364 85 TAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPG 128 (161)
Q Consensus 85 ~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 128 (161)
++++|+ ++...++++++|.++++|.|....+|+-.+.
T Consensus 78 ~l~~GP-------Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ 114 (146)
T COG2867 78 KLIDGP-------FKYLKGGWQFTPLSEDACKVEFFLDFEFKSR 114 (146)
T ss_pred hhhcCC-------hhhhcCceEEEECCCCceEEEEEEEeeehhH
Confidence 777664 6788899999998778999999999998763
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.83 E-value=0.0016 Score=46.71 Aligned_cols=122 Identities=14% Similarity=0.109 Sum_probs=69.6
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEE
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYT 85 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~ 85 (161)
+..+..++||+++||+++ .|... +.+|+.. ..+.+...| |..+ +..|. +.=++.++++..+ +.|+
T Consensus 2 i~~~r~i~ap~e~Vw~A~-T~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g~----~~g~~~~i~p~~~-l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEAL-TDEER-VQAFTRS-PAKVDAKVG----GKFS---LFGGN----ITGEFVELVPGKK-IVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHH-CCHHH-HHhhcCC-CceecCCCC----CEEE---EeCCc----eEEEEEEEcCCCE-EEEE
Confidence 567888999999999999 58876 7888753 223433222 3333 23331 3335666775544 6666
Q ss_pred EEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHH-HHHHHHHHHH
Q 031364 86 AIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEK-GIFKALEAYA 154 (161)
Q Consensus 86 ~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~-~~~k~le~~l 154 (161)
---.+.. .. ..-..++.+++. +++|.++.+....+.. ..+. ..+... .++..|.++|
T Consensus 67 w~~~~~~---~~-~~s~v~~~l~~~-~~gT~ltl~~~g~~~~----~~~~---~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 67 WRFKSWP---EG-HYSTVTLTFTEK-DDETELKLTQTGVPAG----EEER---TREGWERYYFESIKQTF 124 (126)
T ss_pred EEcCCCC---CC-CcEEEEEEEEEC-CCCEEEEEEEECCCCc----hHHH---HHhhHHHHHHHHHHHHh
Confidence 4322221 01 123577888886 4678877776654332 1111 234444 3667777665
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.56 E-value=0.0013 Score=47.82 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=65.8
Q ss_pred EcCChHHHHHHhhhccCcccccc-cCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEEEEecC
Q 031364 12 STLPPEKLFKLFVLHFDTLLPKV-LPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE 90 (161)
Q Consensus 12 i~apa~~vW~~~~~d~~~llp~~-~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~~~eg~ 90 (161)
++||+++||+++ -|... +.+| .+. ...++...| |..+.+ .+. +.=+...+|+.++ |.|+---.+
T Consensus 1 f~ap~e~Vw~A~-Tdp~~-l~~w~~~~-~~~~d~~~G----G~f~~~---~~~----~~G~~~ev~pp~r-lv~tw~~~~ 65 (132)
T PTZ00220 1 FYVPPEVLYNAF-LDAYT-LTRLSLGS-PAEMDAKVG----GKFSLF---NGS----VEGEFTELEKPKK-IVQKWRFRD 65 (132)
T ss_pred CCCCHHHHHHHH-cCHHH-HHHHhcCC-CccccCCcC----CEEEEe---cCc----eEEEEEEEcCCCE-EEEEEecCC
Confidence 479999999999 58886 7777 432 112222222 233332 221 2225566777665 455432122
Q ss_pred CCCCCCCccEEEEEEEEEEeCCCCeeEEEEEE-EEeCCCCC--CChhhhhhhHHHHHH-HHHHHHHHHh
Q 031364 91 GDANIPTIDHVSYESKVVGTPDGGSKSTVVIK-FYPKPGAE--IKEEQVKGGLEKEKG-IFKALEAYAL 155 (161)
Q Consensus 91 ~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~-y~~~~~~~--~~~~~~~~~~~~~~~-~~k~le~~l~ 155 (161)
.. ...++ ..++.+++.++|+|.++.+.. +....... ...+. ..+.... ++..|++||-
T Consensus 66 ~~--~~~~s--~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~---~~~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 66 WE--EDVYS--KVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLER---CRNGWTQNFLDRFEKILG 127 (132)
T ss_pred CC--CCCce--EEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhH---HHhChHHHHHHHHHHHhC
Confidence 11 01122 578888887667899988877 43222111 11111 2345555 6888888873
No 44
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.28 E-value=0.046 Score=42.95 Aligned_cols=125 Identities=6% Similarity=-0.096 Sum_probs=74.9
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEee-c--C--CcceEEEEEEeeeccCCc
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV-E--G--ADWKYFKHRVDALDKENK 80 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~-~--g--~~~~~~kErl~~iD~~~~ 80 (161)
+..+.++++|++++|+++ .|... -++|.+. ++++++++--+.--.+-.+.+. + . .+...+--+-...+....
T Consensus 47 ~~ge~~v~as~~~v~~ll-~D~~~-r~~Wd~~-~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 47 FLGAGVIKAPLATVWKAV-KDPRT-RFLYDTM-IKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEEcCCHHHHHHHH-hCcch-hhhhHHh-hhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 446778999999999999 69998 8999985 8899988754321233333332 1 2 222222222222233333
Q ss_pred eeEEEEEec-CCCC---CCCCccEEEEEEEEEEe---CCCCeeEEEEEEEEeCCCCCCCh
Q 031364 81 IYNYTAIEG-EGDA---NIPTIDHVSYESKVVGT---PDGGSKSTVVIKFYPKPGAEIKE 133 (161)
Q Consensus 81 ~~~y~~~eg-~~~~---~~~~~~~y~~t~~v~~~---~~g~s~v~W~~~y~~~~~~~~~~ 133 (161)
.+.-+-+.- ..+. +..-...+.+-+.++|. ++|.|.++..+..++.+++.|.-
T Consensus 124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~ 183 (205)
T cd08874 124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQ 183 (205)
T ss_pred EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHH
Confidence 333333332 2110 01123456677888998 77789999999999986655433
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.20 E-value=0.061 Score=43.24 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=87.0
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCC-CCccEEEEEeec---CCcceEEEEEEee--ecc
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDG-GPGSIKKFNFVE---GADWKYFKHRVDA--LDK 77 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg-~~GsiR~~~~~~---g~~~~~~kErl~~--iD~ 77 (161)
..+..+..+++|++++|+++ .|... -++|.++ ..++++++--+ ..+ +-.+.+.. -.+...+--+-.. .+.
T Consensus 77 l~fk~e~~vd~s~~~v~dlL-~D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLL-SDPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred eEEEEEEEecCCHHHHHHHH-hCcch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCC
Confidence 45677888999999999999 69998 8999986 77888887432 223 23333322 1221222221111 233
Q ss_pred CC-ceeEEEEEe-cCC-CC-CCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 031364 78 EN-KIYNYTAIE-GEG-DA-NIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAY 153 (161)
Q Consensus 78 ~~-~~~~y~~~e-g~~-~~-~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~ 153 (161)
.+ ..+..+-+. ... +. +-.-...+.+-+.+.|.++|+|.++.....+|.--. --...+..+-..+...|+..++|
T Consensus 153 ~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~-~~~~~~~~~~~~~~~~~~~~~~~ 231 (235)
T cd08873 153 GDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLS-YVTCNLAGLSALYCRTFHCCEQF 231 (235)
T ss_pred CCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccc-eeeecchhhhHHHHHHHHHHHHH
Confidence 22 333333333 111 10 001145667888999998889999988888774311 11122333445566778888888
Q ss_pred HhhC
Q 031364 154 ALAN 157 (161)
Q Consensus 154 l~~~ 157 (161)
|..|
T Consensus 232 ~~~~ 235 (235)
T cd08873 232 LVTN 235 (235)
T ss_pred hccC
Confidence 8764
No 46
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.18 E-value=0.055 Score=40.23 Aligned_cols=110 Identities=18% Similarity=0.269 Sum_probs=66.6
Q ss_pred ChHHHHHHhhhccCcccccc-cCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEEEEe-cCCC
Q 031364 15 PPEKLFKLFVLHFDTLLPKV-LPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIE-GEGD 92 (161)
Q Consensus 15 pa~~vW~~~~~d~~~llp~~-~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~~~e-g~~~ 92 (161)
..+++|.-+.....+ |+. .| .+.+|++++.++. -..|.++|+.. .++|++. +++.. ++.|.+-. |+.
T Consensus 18 Tr~QlW~GL~~kar~--p~~Fvp-~i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt-~~~~~-~v~f~~~~~g~~- 86 (141)
T cd08863 18 TRAQLWRGLVLRARE--PQLFVP-GLDRCEVLSESGT-VLERELTFGPA----KIRETVT-LEPPS-RVHFLQADAGGT- 86 (141)
T ss_pred CHHHHHhHHHhhhCC--chhccc-ccceEEEEecCCC-EEEEEEEECCc----eEEEEEE-ecCCc-EEEEEecCCCCe-
Confidence 356999988555565 555 55 5899999987643 45799999875 7999987 55544 47888765 322
Q ss_pred CCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCC-CCCChhhhhhhHHHHHHHHHH
Q 031364 93 ANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPG-AEIKEEQVKGGLEKEKGIFKA 149 (161)
Q Consensus 93 ~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~-~~~~~~~~~~~~~~~~~~~k~ 149 (161)
.++.+....+| -+-.++.|+.... ..+ ++ .+.+.+....+++.
T Consensus 87 ----------l~~~iee~~~g--~L~lrf~ye~~~p~~~~-~e-~~~~~~~~~~a~~~ 130 (141)
T cd08863 87 ----------LTNTIEEPEDG--ALYLRFVYETTLPEVAE-EE-AKAYQEIVKQAYKE 130 (141)
T ss_pred ----------EEEEeccCCCC--cEEEEEEEEecCCCcCc-hH-HHHHHHHHHHHHHH
Confidence 24444433344 3555777775443 233 22 22244444444443
No 47
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.34 E-value=0.31 Score=38.14 Aligned_cols=145 Identities=11% Similarity=0.039 Sum_probs=79.2
Q ss_pred EEEEEEEcCChHHHH-HHhhhccCcccccccCcceeeEEEecCCC-CCccEEEEEeec-CC---cceEEEEEEeeeccCC
Q 031364 6 LNAEETSTLPPEKLF-KLFVLHFDTLLPKVLPQVVKNVELISGDG-GPGSIKKFNFVE-GA---DWKYFKHRVDALDKEN 79 (161)
Q Consensus 6 ~~~e~~i~apa~~vW-~~~~~d~~~llp~~~P~~v~s~e~~eGdg-~~GsiR~~~~~~-g~---~~~~~kErl~~iD~~~ 79 (161)
+..+..+++|+++++ .++ .|... .++|.+. +.++++++--+ ..=-++.+..+. ++ +...+--|...-+..+
T Consensus 51 ~k~e~~i~~~~~~l~~~l~-~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELV-DRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred EEEEEEecCCHHHHHHHHH-hchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 457788999999999 555 58887 8999997 66777765432 111133322221 11 1122222222223333
Q ss_pred ceeEEEEEecCCC-C--CCCCccEEEEEEEEEEeCC--CCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHHHHHHH
Q 031364 80 KIYNYTAIEGEGD-A--NIPTIDHVSYESKVVGTPD--GGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFKALEAY 153 (161)
Q Consensus 80 ~~~~y~~~eg~~~-~--~~~~~~~y~~t~~v~~~~~--g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~le~~ 153 (161)
..+.....+-+.. . +-.-...+.+-+.++|.++ +.|.++|.+-.++++.. |.-.++. +.+.....++.|-++
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i--P~~lvN~~~~~~~~~~~~~Lr~~ 205 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL--PKSIINQVLSQTQVDFANHLRQR 205 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC--CHHHHHHHhHHhHHHHHHHHHHH
Confidence 3221111222211 0 0001234456677888765 78999999999998753 3434443 344445667777666
Q ss_pred Hh
Q 031364 154 AL 155 (161)
Q Consensus 154 l~ 155 (161)
+.
T Consensus 206 ~~ 207 (209)
T cd08905 206 MA 207 (209)
T ss_pred Hh
Confidence 64
No 48
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.26 E-value=0.084 Score=39.54 Aligned_cols=98 Identities=16% Similarity=0.279 Sum_probs=53.1
Q ss_pred EEEEEEEcCCh--------HHHHHHhhhccCccccc-ccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeec
Q 031364 6 LNAEETSTLPP--------EKLFKLFVLHFDTLLPK-VLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALD 76 (161)
Q Consensus 6 ~~~e~~i~apa--------~~vW~~~~~d~~~llp~-~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD 76 (161)
+++.+.||-|. +++|+-+.....+ |. +.| .+.+|++++.. +..-.|.++|+. ..++|++. +.
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~--p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg~----~~v~E~v~-~~ 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN--PQLFVP-GIDSCEVLSES-DTVLTREVTFGG----ATVRERVT-LY 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH---GGGT-T-T--EEEEEEE--SSEEEEEEEETT----EEEEEEEE-EE
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC--hhhCcc-ccCeEEEEecC-CCeEEEEEEECC----cEEEEEEE-Ee
Confidence 44555565554 5799998544454 44 466 58999999765 346799999933 48999987 44
Q ss_pred cCCceeEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeC
Q 031364 77 KENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPK 126 (161)
Q Consensus 77 ~~~~~~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 126 (161)
+.. ++.|....| + +.++.+....+| -+-.++.|+-.
T Consensus 73 ~~~-~V~f~~~~G---------s--~lt~~I~e~~~g--~L~ltf~ye~~ 108 (149)
T PF08982_consen 73 PPE-RVDFAQHDG---------S--SLTNIISEPEPG--DLFLTFTYEWR 108 (149)
T ss_dssp TTT-EEEESSSBE---------E--EEEEEEEEEETT--EEEEEEEEEEE
T ss_pred CCc-EEEEEcCCC---------C--EEEEEEecCCCC--cEEEEEEEEec
Confidence 444 567721111 2 334455433333 55556666643
No 49
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.15 E-value=0.54 Score=37.89 Aligned_cols=117 Identities=9% Similarity=0.053 Sum_probs=66.7
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCC-CCccEEEEEeecC-Cc---ceEEEEEEeeeccCC
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDG-GPGSIKKFNFVEG-AD---WKYFKHRVDALDKEN 79 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg-~~GsiR~~~~~~g-~~---~~~~kErl~~iD~~~ 79 (161)
.+..+..+++|++++++++ .|... .++|.++ +.++++++--+ .. .+..++..+- ++ ...+--+-..-+.++
T Consensus 82 ~fK~e~~vd~s~e~v~~lL-~D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLL-SDLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred EEEEEEEEcCCHHHHHHHH-hChhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 4566778999999999999 69998 8999987 77888875542 22 3555543331 11 122221111122222
Q ss_pred c---eeEEEEEe-cCCCC--CCCCccEEEEEEEEEEeCCCCeeEEEEEEEEe
Q 031364 80 K---IYNYTAIE-GEGDA--NIPTIDHVSYESKVVGTPDGGSKSTVVIKFYP 125 (161)
Q Consensus 80 ~---~~~y~~~e-g~~~~--~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~ 125 (161)
. .+..+.+. .+.+. +-.-..++.+-+.+.|.++|.|.+++...-+|
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 2 12222222 22210 00013345577888888888899988665554
No 50
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.80 E-value=0.67 Score=36.12 Aligned_cols=148 Identities=13% Similarity=0.083 Sum_probs=81.9
Q ss_pred cEEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEee---cCCcceEE-E-EEEeeecc
Q 031364 3 VLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV---EGADWKYF-K-HRVDALDK 77 (161)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~---~g~~~~~~-k-Erl~~iD~ 77 (161)
+..+..+..+++|++.+.+++ .|... .++|.|....+ +.++..+..-.+-.+.+. +-+....+ . -.++.+++
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl-~d~~~-~~~W~p~~~~~-~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~ 121 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALL-NEVEL-YKTWVPFCIRS-KKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEE 121 (215)
T ss_pred EEEEEEEEEecCChhHeEEEE-ehhhh-Hhhhcccceee-EEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeecc
Confidence 356778889999999999999 69875 99999975544 444433221122222221 11111111 1 11222323
Q ss_pred CCceeEE--EEEecC----------CCC---CCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhh-hhHH
Q 031364 78 ENKIYNY--TAIEGE----------GDA---NIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVK-GGLE 141 (161)
Q Consensus 78 ~~~~~~y--~~~eg~----------~~~---~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~ 141 (161)
+..+.. +-+..+ ++. +..-...+.+-+.++|.+++.|.+++.+..+|.+.-. |.-.++ ..++
T Consensus 122 -~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~I-P~~liN~~~k~ 199 (215)
T cd08877 122 -NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLV-PKSLLNFVARK 199 (215)
T ss_pred -CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccC-CHHHHHHHHHH
Confidence 333322 212110 110 0111356677788999988899999999888776522 333444 3455
Q ss_pred HHHHHHHHHHHHHh
Q 031364 142 KEKGIFKALEAYAL 155 (161)
Q Consensus 142 ~~~~~~k~le~~l~ 155 (161)
.+-.+++.|.+-+.
T Consensus 200 ~~~~~~~~l~k~~~ 213 (215)
T cd08877 200 FAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHh
Confidence 55677777766543
No 51
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.78 E-value=0.54 Score=34.94 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=77.7
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCc---ceEEEEEEeeeccCCc
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGAD---WKYFKHRVDALDKENK 80 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~---~~~~kErl~~iD~~~~ 80 (161)
..+..+.++++|++++|+++ .|... .++|-|. +.++++++..+..-.+....+....+ ...+--+-...++++.
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l-~d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~ 115 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELL-MDIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT 115 (193)
T ss_pred eeEEEEEEECCCHHHHHHHH-hCCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence 34667888999999999999 58776 8999986 77888887653222344444432221 1112111111233222
Q ss_pred -eeEEEEEecC-CCCCCCCcc--EEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhh-hhHHHHHHHHHHHHH
Q 031364 81 -IYNYTAIEGE-GDANIPTID--HVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVK-GGLEKEKGIFKALEA 152 (161)
Q Consensus 81 -~~~y~~~eg~-~~~~~~~~~--~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~le~ 152 (161)
.+...-++.+ .+.+...++ .+.+-+.++|.++++|.+++.+..++.+.. |...++ ...+....+.+.+..
T Consensus 116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i--P~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI--PKSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc--cHHHHHhhhhhccHHHHHHHHH
Confidence 2222222221 111001111 223456778887789999999999988643 233333 233333444444443
No 52
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=95.74 E-value=0.73 Score=36.11 Aligned_cols=142 Identities=8% Similarity=-0.010 Sum_probs=76.5
Q ss_pred EEEEEEEEcCChHHHH-HHhhhccCcccccccCcceeeEEEecCCCC-CccEEEEEeec-CCc---ceEEEEEEeeeccC
Q 031364 5 TLNAEETSTLPPEKLF-KLFVLHFDTLLPKVLPQVVKNVELISGDGG-PGSIKKFNFVE-GAD---WKYFKHRVDALDKE 78 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW-~~~~~d~~~llp~~~P~~v~s~e~~eGdg~-~GsiR~~~~~~-g~~---~~~~kErl~~iD~~ 78 (161)
.+..+..+++|++++| .++ .|... .++|.++ +.++++++--+. .--++.++.+. +++ ...+--|--.-+..
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll-~D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~ 126 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVI-LQPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD 126 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hChhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence 3567888999999998 577 69998 8999997 677887755321 11122233221 112 12333233222333
Q ss_pred Cc-eeEEEEEecCCCCCCCCccEE-EEE-----EEEEE--eCCCCeeEEEEEEEEeCCCCCCChhhhh-hhHHHHHHHHH
Q 031364 79 NK-IYNYTAIEGEGDANIPTIDHV-SYE-----SKVVG--TPDGGSKSTVVIKFYPKPGAEIKEEQVK-GGLEKEKGIFK 148 (161)
Q Consensus 79 ~~-~~~y~~~eg~~~~~~~~~~~y-~~t-----~~v~~--~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k 148 (161)
+. .+..++.-... ++.+.| ++. +-+.| .+++.|.++|.+..++.+.. |.-.++ ...+.....++
T Consensus 127 ~~i~~~~sv~~~~~----P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~l--P~~lvN~~~~~~~~~~~~ 200 (209)
T cd08906 127 RYVSAGISTTHSHK----PPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRL--PRYLIHQSLAATMFEFAS 200 (209)
T ss_pred cEEEEEEEEecCCC----CCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCC--CHHHHHHHHHHHHHHHHH
Confidence 32 22333322221 122222 222 23334 45678999999999998743 333333 23444456666
Q ss_pred HHHHHHh
Q 031364 149 ALEAYAL 155 (161)
Q Consensus 149 ~le~~l~ 155 (161)
.|-+++.
T Consensus 201 ~LR~~~~ 207 (209)
T cd08906 201 HLRQRIR 207 (209)
T ss_pred HHHHHHh
Confidence 6666653
No 53
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.59 Score=34.58 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=72.8
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCC-CCCccEEEEEeec-CCc-ceEEEEEEee--eccC
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGD-GGPGSIKKFNFVE-GAD-WKYFKHRVDA--LDKE 78 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGd-g~~GsiR~~~~~~-g~~-~~~~kErl~~--iD~~ 78 (161)
+++.....|+||.|-||+-. ...++ +..+-|..+ +-.-+|+ -+.|+--.+.+.+ |.+ ..+.+-|.++ .|+-
T Consensus 2 ~tF~~~~~i~aP~E~VWafh-srpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFH-SRPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred cceEEeeEecCCHHHHhhhh-cCccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 56778889999999999998 57777 667777533 3223443 1334333332222 222 1466667666 5555
Q ss_pred CceeEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCC
Q 031364 79 NKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPG 128 (161)
Q Consensus 79 ~~~~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 128 (161)
.+ ++=..+.|+.+ --+..-+-++.+.+ |+|++.=.+.|+...+
T Consensus 78 ~~-FtDv~i~gPfp-----~~~WrHtH~F~~eg-g~TvliD~Vsye~p~g 120 (153)
T COG4276 78 SR-FTDVCITGPFP-----ALNWRHTHNFVDEG-GGTVLIDSVSYELPAG 120 (153)
T ss_pred ce-eeeeeecCCcc-----ceeeEEEeeeecCC-CcEEEEeeEEeeccCc
Confidence 44 55566666654 22677888998764 5799999999997544
No 54
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.40 E-value=0.97 Score=35.28 Aligned_cols=144 Identities=10% Similarity=-0.029 Sum_probs=75.6
Q ss_pred EEEEEEEcCChHHHHHHhhhccCc-ccccccCcceeeEEEecCCC-CCccEEEEEee-c-C---CcceEEEE-EEeeecc
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDT-LLPKVLPQVVKNVELISGDG-GPGSIKKFNFV-E-G---ADWKYFKH-RVDALDK 77 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~-llp~~~P~~v~s~e~~eGdg-~~GsiR~~~~~-~-g---~~~~~~kE-rl~~iD~ 77 (161)
+..+..++++++++++.+ .|..+ .-++|-+. +.++++++--+ ...-++. ..+ + + .+...+-- .....++
T Consensus 48 ~k~e~~i~~s~~~~~~~l-~d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCL-KPAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHH-Hhccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence 567888999999999999 56654 12799986 66777775532 2222222 222 1 1 11122221 1122233
Q ss_pred CCceeEEEEEecCC-CCCCCCcc---E--EEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHHHH
Q 031364 78 ENKIYNYTAIEGEG-DANIPTID---H--VSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFKAL 150 (161)
Q Consensus 78 ~~~~~~y~~~eg~~-~~~~~~~~---~--y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~l 150 (161)
....+.+..++-+. +. ..+|- . +...++..|.++++|.++|.+..++++.. |...++. ..+.....++.|
T Consensus 125 ~~i~i~~~sv~h~~~P~-~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~~L 201 (208)
T cd08903 125 GTISSNATNVEHPLCPP-QAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL--PQTVVDSFFPASMAEFYNNL 201 (208)
T ss_pred ceEEEeEEeccCCCCCC-CCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc--CHHHHHHHhhHHHHHHHHHH
Confidence 33334443333321 10 01111 1 12233334445568999999999987643 3444443 234445667777
Q ss_pred HHHHh
Q 031364 151 EAYAL 155 (161)
Q Consensus 151 e~~l~ 155 (161)
.+++.
T Consensus 202 r~~~~ 206 (208)
T cd08903 202 TKAVK 206 (208)
T ss_pred HHHHh
Confidence 77664
No 55
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=95.14 E-value=1.4 Score=35.53 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=67.5
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeec--CCcc-eEEE--EEEeeeccC
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE--GADW-KYFK--HRVDALDKE 78 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~--g~~~-~~~k--Erl~~iD~~ 78 (161)
..+..+..+++|++++++++ .|... -++|.++ ..++++++--+.---|..+.-.+ ..+. ..+- -+....++.
T Consensus 78 l~fk~e~~vdvs~~~l~~LL-~D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLL-SDFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHH-hChhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 45677888999999999999 69998 9999997 66788875532111266655333 1111 1211 111112122
Q ss_pred C-ceeEEEEEec-CCCCCCCC---ccE-EEEEEEEEEeCCCCeeEEEEEEEEe
Q 031364 79 N-KIYNYTAIEG-EGDANIPT---IDH-VSYESKVVGTPDGGSKSTVVIKFYP 125 (161)
Q Consensus 79 ~-~~~~y~~~eg-~~~~~~~~---~~~-y~~t~~v~~~~~g~s~v~W~~~y~~ 125 (161)
+ ..+.-+-+.. -.+. .++ ... ..+. .++|.++++|.++....-+|
T Consensus 155 ~~~~I~~~SVp~~~~Pp-~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 155 NTYVVAVKSVILPSVPP-SPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CEEEEEEeecccccCCC-CCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 2 3222222222 1110 011 223 3333 78888888999999888888
No 56
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.75 E-value=1.5 Score=33.97 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=78.0
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCC-CCCccEEEEEeecC-Cc---ceEEEEEEeeeccCCc
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGD-GGPGSIKKFNFVEG-AD---WKYFKHRVDALDKENK 80 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGd-g~~GsiR~~~~~~g-~~---~~~~kErl~~iD~~~~ 80 (161)
+..+..+++|+++++..+..|.+. .++|.+. +..+++++.- +..--+......+. .+ ...+--|--..++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 566788999999998754368887 8999997 5566666543 22111222222221 11 1222222222233333
Q ss_pred eeEEEEEecC-CCCCCCC---ccEEEEEEEEEEeCC--CCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHHHHHHH
Q 031364 81 IYNYTAIEGE-GDANIPT---IDHVSYESKVVGTPD--GGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFKALEAY 153 (161)
Q Consensus 81 ~~~y~~~eg~-~~~~~~~---~~~y~~t~~v~~~~~--g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~le~~ 153 (161)
.+...-++-+ .+. ..+ ...+.+-+.++|.++ ++|.++|.+..++.+..+ .-.++. ........++.|.++
T Consensus 128 ~i~~~sv~h~~~P~-~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP--~~lvN~~~~~~~~~~~~~Lr~~ 204 (208)
T cd08868 128 LSSGVSVEHPAMPP-TKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLP--QYLVDQALASVLLDFMKHLRKR 204 (208)
T ss_pred EEEEEeccCCCCCC-CCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCc--ceeeehhhHHHHHHHHHHHHHH
Confidence 3333323311 110 011 233446677888754 579999999999886432 222332 344556777888777
Q ss_pred Hhh
Q 031364 154 ALA 156 (161)
Q Consensus 154 l~~ 156 (161)
+.+
T Consensus 205 ~~~ 207 (208)
T cd08868 205 IAT 207 (208)
T ss_pred Hhh
Confidence 653
No 57
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=94.70 E-value=1.6 Score=34.13 Aligned_cols=146 Identities=13% Similarity=-0.000 Sum_probs=75.1
Q ss_pred EEEEEEEE-cCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeec---CCcceEEEEEEeeeccCCc
Q 031364 5 TLNAEETS-TLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE---GADWKYFKHRVDALDKENK 80 (161)
Q Consensus 5 ~~~~e~~i-~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~---g~~~~~~kErl~~iD~~~~ 80 (161)
.+..+..+ ++|++.+++++ .|... .++|.+. +..+++++.-+.--.|..+.+.. -.+...+--|...-++...
T Consensus 48 ~~k~~~~~~~~s~e~~~~~l-~D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~ 124 (222)
T cd08871 48 MIKVSAIFPDVPAETLYDVL-HDPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEY 124 (222)
T ss_pred EEEEEEEeCCCCHHHHHHHH-HChhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEE
Confidence 34556666 69999999999 68876 8999997 44566554432112233333321 1111222222222222221
Q ss_pred ee-EEEEEecCCCCCCCC---ccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHHHHHHHHh
Q 031364 81 IY-NYTAIEGEGDANIPT---IDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFKALEAYAL 155 (161)
Q Consensus 81 ~~-~y~~~eg~~~~~~~~---~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~le~~l~ 155 (161)
.+ ..++.-...+. ..+ ...+.+-+.++|.++++|.++|....++.+. .|.-.++. +....-.++++|.+.+.
T Consensus 125 vi~~~sv~~~~~P~-~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~--IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 125 IIFNHSVKHKKYPP-RKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS--LPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred EEEeccccCCCCCC-CCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC--cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22 11221111110 011 1234556678888778899999988888764 33434332 23334455655555544
Q ss_pred h
Q 031364 156 A 156 (161)
Q Consensus 156 ~ 156 (161)
+
T Consensus 202 ~ 202 (222)
T cd08871 202 K 202 (222)
T ss_pred H
Confidence 3
No 58
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=92.47 E-value=4.1 Score=31.63 Aligned_cols=147 Identities=16% Similarity=0.076 Sum_probs=80.7
Q ss_pred EEEEEEEEE-cCChHHHHHHhhhccCcccccccCcceeeEEEecCCCC--CccEEEE-Eee-cCCcceEEEEEEeeec-c
Q 031364 4 LTLNAEETS-TLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGG--PGSIKKF-NFV-EGADWKYFKHRVDALD-K 77 (161)
Q Consensus 4 ~~~~~e~~i-~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~--~GsiR~~-~~~-~g~~~~~~kErl~~iD-~ 77 (161)
..+..+.++ ++|++.+++++ .|... .++|.+. +.+.++++-++. ...++.. .++ +-.+..++--|-.-.| +
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l-~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 126 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFY-WDDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDD 126 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHH-cChhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCC
Confidence 345667778 67999999999 69886 8999987 556666655532 2222221 111 1112223333322233 3
Q ss_pred CCceeEEEEEec-CCCC-CCCCccEEEEEEEEEEe--CCCCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHHHHHH
Q 031364 78 ENKIYNYTAIEG-EGDA-NIPTIDHVSYESKVVGT--PDGGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFKALEA 152 (161)
Q Consensus 78 ~~~~~~y~~~eg-~~~~-~~~~~~~y~~t~~v~~~--~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~le~ 152 (161)
....+....+.- ..+. +-.-+..|.+.+.++|. ++++|.+.++.--+|.+. .|.-.++. .....-.+++.|.+
T Consensus 127 ~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~~ 204 (209)
T cd08870 127 RSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLEN 204 (209)
T ss_pred CEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHHH
Confidence 333333333222 1110 01226778888999998 567788887777766433 44444442 33444566777766
Q ss_pred HHh
Q 031364 153 YAL 155 (161)
Q Consensus 153 ~l~ 155 (161)
-+.
T Consensus 205 a~~ 207 (209)
T cd08870 205 ALR 207 (209)
T ss_pred HHh
Confidence 553
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=91.93 E-value=4.9 Score=31.27 Aligned_cols=146 Identities=15% Similarity=0.130 Sum_probs=78.8
Q ss_pred EEEEEEEE-cCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCcc-EEEEEee-c--CCcceEEEEEEeeeccCC
Q 031364 5 TLNAEETS-TLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGS-IKKFNFV-E--GADWKYFKHRVDALDKEN 79 (161)
Q Consensus 5 ~~~~e~~i-~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~Gs-iR~~~~~-~--g~~~~~~kErl~~iD~~~ 79 (161)
.+..+..+ ++|++.+.+++ .|... -++|.+. +.++++++.+...++ +-.+.+. + =.+...+--|-...|+++
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~-~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 122 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQ-LDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN 122 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHH-hCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence 45565656 99999999999 69887 8999986 567788876422222 2222222 1 111134444444456555
Q ss_pred cee--EEEEEec-CCCC--CCCCccEEEEEEEEEEeC---CCCeeEEEEEEEEeCCCCCCChhhhh-hhHHHHHHHHHHH
Q 031364 80 KIY--NYTAIEG-EGDA--NIPTIDHVSYESKVVGTP---DGGSKSTVVIKFYPKPGAEIKEEQVK-GGLEKEKGIFKAL 150 (161)
Q Consensus 80 ~~~--~y~~~eg-~~~~--~~~~~~~y~~t~~v~~~~---~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~l 150 (161)
..+ ...-++- ..+. +-.-..+|.+.+.+.|.. +++|.+.++.--+| +...|.-.++ .+....-.+++.|
T Consensus 123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dP--gG~IP~~lvN~~~~~~~~~~l~~l 200 (207)
T cd08911 123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNP--GVNIPSYITSWVAMSGMPDFLERL 200 (207)
T ss_pred CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCC--CCccCHHHHHHHHHhhccHHHHHH
Confidence 432 2112221 1110 001256788888898873 45777765444333 3333444443 2344445666666
Q ss_pred HHHHh
Q 031364 151 EAYAL 155 (161)
Q Consensus 151 e~~l~ 155 (161)
..-++
T Consensus 201 ~~a~~ 205 (207)
T cd08911 201 RNAAL 205 (207)
T ss_pred HHHHh
Confidence 66554
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=91.76 E-value=4.9 Score=30.98 Aligned_cols=120 Identities=11% Similarity=0.016 Sum_probs=66.9
Q ss_pred EEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeec---CCcceEEEEEEeeeccCC--
Q 031364 5 TLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE---GADWKYFKHRVDALDKEN-- 79 (161)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~---g~~~~~~kErl~~iD~~~-- 79 (161)
.+..+..+++++++++..+ .|. -++|.++ +.++++++--+.-=.|-...+.. ..+...+--|.-..+.++
T Consensus 45 ~~K~~~~v~a~~~~v~~~l-~d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRI-LRE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEEEEeCCCHHHHHHHH-HHH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 3577888999999999988 453 3799987 56777765432101122222211 112233333333333333
Q ss_pred ceeEEEEEec--CCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCC
Q 031364 80 KIYNYTAIEG--EGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGA 129 (161)
Q Consensus 80 ~~~~y~~~eg--~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~ 129 (161)
..+..+-++- ..+.+..-...+.+-+.++|.++|+|.+++.+..++.+..
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRS 171 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCC
Confidence 3333333321 1110000123455667789988889999999999998753
No 61
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=91.32 E-value=5.2 Score=30.41 Aligned_cols=148 Identities=12% Similarity=-0.075 Sum_probs=81.1
Q ss_pred EEEEEEEEEcCChHHHH-HHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecC-Cc---ceEEEEEE-eeecc
Q 031364 4 LTLNAEETSTLPPEKLF-KLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEG-AD---WKYFKHRV-DALDK 77 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW-~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g-~~---~~~~kErl-~~iD~ 77 (161)
-.+..+..++++++++. .++ .|... .++|.+. +.++++++-...-..|..+.+..- ++ ...+--|- ...++
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~-~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~ 121 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELM-DDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVD 121 (206)
T ss_pred EEEEEEEEEecChHHHHHHHH-hcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCC
Confidence 35667788999999855 566 68887 8999986 566776654321124444433211 12 12221111 11223
Q ss_pred CCceeEEEEEecCCC-CCCC--CccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhh-hhHHHHHHHHHHHHHH
Q 031364 78 ENKIYNYTAIEGEGD-ANIP--TIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVK-GGLEKEKGIFKALEAY 153 (161)
Q Consensus 78 ~~~~~~y~~~eg~~~-~~~~--~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~le~~ 153 (161)
....+..+-++.+-. .+.. -...+.+-+.++|.+++.|.++|....++.+.. |.-.++ .+......+++.+-++
T Consensus 122 ~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i--P~~lvn~~~~~~~~~~~~~~~~~ 199 (206)
T smart00234 122 GSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL--PHWLVRSLIKSGLAEFAKTWVAT 199 (206)
T ss_pred CcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc--cceeehhhhhhhHHHHHHHHHHH
Confidence 333333332322211 0000 123566778889988888999999999987753 233333 2344445666666666
Q ss_pred Hhh
Q 031364 154 ALA 156 (161)
Q Consensus 154 l~~ 156 (161)
|..
T Consensus 200 ~~~ 202 (206)
T smart00234 200 LQK 202 (206)
T ss_pred HHH
Confidence 543
No 62
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=90.41 E-value=5.9 Score=29.47 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=61.9
Q ss_pred EEEEEEcCChHHHHHHhhhccCcccccc---cCc---ceeeEEEecCCCCCccEEEE-Eeec-CCc---------ceEE-
Q 031364 7 NAEETSTLPPEKLFKLFVLHFDTLLPKV---LPQ---VVKNVELISGDGGPGSIKKF-NFVE-GAD---------WKYF- 68 (161)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~llp~~---~P~---~v~s~e~~eGdg~~GsiR~~-~~~~-g~~---------~~~~- 68 (161)
+.++++++|+++||++| .|-.= +..- +.. .+.+++ .+|+| . +++.- .+.. ..| .-.+
T Consensus 2 ~~~~~~~~~~~~v~~~~-~d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g-~-~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAF-TDEDY-WEARCAALGADNAEVESFE-VDGDG-V-RVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred eEEEEcCCCHHHHHHHH-cCHHH-HHHHHHHcCCCCceEEEEE-EcCCe-E-EEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 56788999999999999 45432 2222 221 233333 23333 1 12111 1221 111 0122
Q ss_pred -EEEEeeeccCCceeEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeC
Q 031364 69 -KHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPK 126 (161)
Q Consensus 69 -kErl~~iD~~~~~~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 126 (161)
.|+....++..++.+|++--.+.+ -+.++++.+.|. +++|.+.+..+....
T Consensus 77 ~~e~w~~~~~g~~~g~~~~~~~G~P------~~~~G~~~L~~~-~~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 77 RTETWTPLDDGRRTGTFTVSIPGAP------VSISGTMRLRPD-GGGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEecCCCCeEEEEEEEEecCce------EEEEEEEEEecC-CCCEEEEEEEEEEEE
Confidence 233333477888888886543333 478899999995 457999999999864
No 63
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=90.19 E-value=7.1 Score=30.09 Aligned_cols=141 Identities=9% Similarity=-0.045 Sum_probs=73.5
Q ss_pred EEEEEEEcCChHHHHHHhhhc--cCcccccccCcceeeEEEecCCCCCccEEEEEeec--CC---cceEE-EEEEeeecc
Q 031364 6 LNAEETSTLPPEKLFKLFVLH--FDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE--GA---DWKYF-KHRVDALDK 77 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d--~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~--g~---~~~~~-kErl~~iD~ 77 (161)
+..+..++++++++.+++ .| ... .++|-+. +.++++++.-+..=.+-...+.. .+ +...+ .+....+++
T Consensus 48 ~k~~~~i~~~~~~v~~~l-~d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~ 124 (206)
T cd08867 48 YRAEGIVDALPEKVIDVI-IPPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYED 124 (206)
T ss_pred EEEEEEEcCCHHHHHHHH-HhcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCC
Confidence 677888999999999998 57 555 6899986 67888886643211122222211 11 11111 111122333
Q ss_pred CCceeEEEEEecCCCCCCCCccE------EEEEEEEEEeC--CCCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHH
Q 031364 78 ENKIYNYTAIEGEGDANIPTIDH------VSYESKVVGTP--DGGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFK 148 (161)
Q Consensus 78 ~~~~~~y~~~eg~~~~~~~~~~~------y~~t~~v~~~~--~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k 148 (161)
....+...-++-+. .++... +.+-+.+.|.+ +++|.++|.+..++.+.. |.-.++. ..+.....++
T Consensus 125 ~~~~i~~~Sv~hp~---~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~ 199 (206)
T cd08867 125 NQWSSSGKSVDIPE---RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI--PQSLVESAMPSNLVNFYT 199 (206)
T ss_pred CeEEEEEEeccCCC---CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC--cHHHHHhhhhhhHHHHHH
Confidence 22323333332121 122222 22333556653 367999999999998743 3444432 3333345566
Q ss_pred HHHHHH
Q 031364 149 ALEAYA 154 (161)
Q Consensus 149 ~le~~l 154 (161)
.|-+|+
T Consensus 200 ~lr~~~ 205 (206)
T cd08867 200 DLVKGV 205 (206)
T ss_pred HHHHhc
Confidence 666554
No 64
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=89.05 E-value=10 Score=30.28 Aligned_cols=144 Identities=11% Similarity=0.066 Sum_probs=78.9
Q ss_pred EEEEEEEEc-CChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEee---cCCcceEE-EEEEeeeccCC
Q 031364 5 TLNAEETST-LPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFV---EGADWKYF-KHRVDALDKEN 79 (161)
Q Consensus 5 ~~~~e~~i~-apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~---~g~~~~~~-kErl~~iD~~~ 79 (161)
.+..+..++ ++++.+.++| .|... .++|... +.+.++++-...--.|-...+. +-.+...+ .-++...|+..
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l-~D~~~-r~~Wd~~-~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~ 129 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYF-FDPDV-RMDWETT-LENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALE 129 (235)
T ss_pred eEEEEEEECCCCHHHHHHHH-hChhh-HHHHHhh-hheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCccc
Confidence 467777788 9999999999 69887 8999986 6677766543210111122111 11111111 11222223321
Q ss_pred --------ceeEEEEEecCCCCCCCCccEEEEEE-----------------EEEEeCCCCeeEEEEEEEEeCCCCCCChh
Q 031364 80 --------KIYNYTAIEGEGDANIPTIDHVSYES-----------------KVVGTPDGGSKSTVVIKFYPKPGAEIKEE 134 (161)
Q Consensus 80 --------~~~~y~~~eg~~~~~~~~~~~y~~t~-----------------~v~~~~~g~s~v~W~~~y~~~~~~~~~~~ 134 (161)
-.+..++.-...+ ..-...++.. .++| ++++|.+++....+|.+.. |.-
T Consensus 130 ~~~~~~~~vii~~Sv~h~~~P---~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~i--P~w 203 (235)
T cd08872 130 EPNAHDTWIVCNFSVDHDSAP---LNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWA--PAS 203 (235)
T ss_pred cccCCCeEEEEEecccCccCC---CCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCc--cHH
Confidence 2234443322222 1112233332 1233 3567999888888887643 333
Q ss_pred hhh-hhHHHHHHHHHHHHHHHhhC
Q 031364 135 QVK-GGLEKEKGIFKALEAYALAN 157 (161)
Q Consensus 135 ~~~-~~~~~~~~~~k~le~~l~~~ 157 (161)
.++ .++..+-++++.|.+|+..+
T Consensus 204 vvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 204 VLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHh
Confidence 343 46666789999999999874
No 65
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=83.91 E-value=19 Score=28.26 Aligned_cols=120 Identities=10% Similarity=-0.024 Sum_probs=65.7
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCC-CCccEEEE-Eee-cCCcceEEEEEEeeeccCCc
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDG-GPGSIKKF-NFV-EGADWKYFKHRVDALDKENK 80 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg-~~GsiR~~-~~~-~g~~~~~~kErl~~iD~~~~ 80 (161)
..+..+.+++++++++...+. |- -++|.+.+ .+.++++--+ ..--+... +.. +..+...+--|.-..|..+.
T Consensus 52 ~~~r~~~~i~a~~~~vl~~ll-d~---~~~Wd~~~-~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLL-KE---QHLWDVDL-LDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKG 126 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-hh---HHHHHHHh-hheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence 456788999999999999994 54 37898874 4555554422 11111111 111 11122333333333334444
Q ss_pred eeEEEEEecC---CCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCC
Q 031364 81 IYNYTAIEGE---GDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPG 128 (161)
Q Consensus 81 ~~~y~~~eg~---~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 128 (161)
.+........ .+.+..-...+.+-+.++|.++|+|.++..+..+|.+.
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence 3322222111 11000112345566788998888999999999998774
No 66
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=79.91 E-value=26 Score=27.19 Aligned_cols=143 Identities=11% Similarity=0.067 Sum_probs=75.4
Q ss_pred EEEEEEEEEc-CChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeec---CCcceEE--EEEEeeecc
Q 031364 4 LTLNAEETST-LPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE---GADWKYF--KHRVDALDK 77 (161)
Q Consensus 4 ~~~~~e~~i~-apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~---g~~~~~~--kErl~~iD~ 77 (161)
..+..+..++ ++++.+++++ .|... -++|.+.+.+ +.-.+.++. .|-.+.+.. -.+...+ +.+ ..+|.
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l-~D~~~-r~~Wd~~~~~-~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~-~~~~~ 122 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVY-MDLEY-RKQWDQYVKE-LYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQR-RDLDV 122 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHH-hCHHH-HHHHHHHHHh-heeecCCCC--EEEEEEEEcCCCCCCceEEEEEEe-ccccC
Confidence 3466677888 7999999999 69887 8999987543 321222221 223333321 1111222 233 23444
Q ss_pred CCceeEE---EEEecC-CCC--CCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhh-hhHHHHHHHHHHH
Q 031364 78 ENKIYNY---TAIEGE-GDA--NIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVK-GGLEKEKGIFKAL 150 (161)
Q Consensus 78 ~~~~~~y---~~~eg~-~~~--~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~l 150 (161)
.+..+.. ...+-+ .+. +-.-...|.+.+.++|.++++|.+++....+|.+. .|.-.++ ......-.++++|
T Consensus 123 ~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~--IP~wlvN~~~~~~~~~~l~~l 200 (207)
T cd08910 123 EGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM--IPSWLINWAAKNGVPNFLKDM 200 (207)
T ss_pred CCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc--chHHHHHHHHHHhhHHHHHHH
Confidence 4432111 111111 110 00125678888889888777888888777776543 3343443 2344445666666
Q ss_pred HHHH
Q 031364 151 EAYA 154 (161)
Q Consensus 151 e~~l 154 (161)
..-+
T Consensus 201 ~ka~ 204 (207)
T cd08910 201 QKAC 204 (207)
T ss_pred HHHH
Confidence 5544
No 67
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=69.67 E-value=21 Score=28.43 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=62.1
Q ss_pred EEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEE--eecCCcceEEEEEEeeeccCCceeEEEEE-
Q 031364 11 TSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFN--FVEGADWKYFKHRVDALDKENKIYNYTAI- 87 (161)
Q Consensus 11 ~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~--~~~g~~~~~~kErl~~iD~~~~~~~y~~~- 87 (161)
-+..+++.+|+++ .+..+ ..+..|- -++.++++.+.+-+.+-.+. |.+=. +...-+++ .++..++ ++..
T Consensus 75 ligysp~~my~vV-S~V~~-Y~~FVPw-C~kS~V~~~~P~~~~kA~LeVGFk~l~--E~y~S~Vt-~~~p~l~--kt~~~ 146 (227)
T KOG3177|consen 75 LIGYSPSEMYSVV-SNVSE-YHEFVPW-CKKSDVTSRRPSGPLKADLEVGFKPLD--ERYTSNVT-CVKPHLT--KTVCA 146 (227)
T ss_pred hhCCCHHHHHHHH-HhHHH-hhccccc-eeccceeecCCCCCceeeEEecCcccc--hhheeeeE-Eecccce--EEeec
Confidence 4778999999999 46665 5666664 33444444431112333343 32211 22333333 4555554 3333
Q ss_pred ecCCCCCCCCccEEEEEEEEEEeC--CCCeeEEEEEEEEeCC
Q 031364 88 EGEGDANIPTIDHVSYESKVVGTP--DGGSKSTVVIKFYPKP 127 (161)
Q Consensus 88 eg~~~~~~~~~~~y~~t~~v~~~~--~g~s~v~W~~~y~~~~ 127 (161)
+|.+ +......+++.|.. .+.|.+...+.|+-..
T Consensus 147 d~rL------F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 147 DGRL------FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred cccH------HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 4433 56777899999988 5899999999999765
No 68
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=58.68 E-value=75 Score=23.79 Aligned_cols=148 Identities=12% Similarity=0.009 Sum_probs=85.1
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCC--cc---eEEEEEEee-ecc
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGA--DW---KYFKHRVDA-LDK 77 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~--~~---~~~kErl~~-iD~ 77 (161)
..+..+..++++++++...+. +-.. +|-+. +.++++++--..-..|..+.+.... +. ..+--|... ..+
T Consensus 46 ~~~k~~~~v~~~~~~~~~~~~-~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~ 120 (206)
T PF01852_consen 46 KMFKAEGVVPASPEQVVEDLL-DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDED 120 (206)
T ss_dssp EEEEEEEEESSCHHHHHHHHH-CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTT
T ss_pred eEEEEEEEEcCChHHHHHHHH-hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEecc
Confidence 456778889999998888873 3332 88886 6677777652111455555444322 32 222112222 244
Q ss_pred CCceeEEEEEecCCCC--CCCCc--cEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhh-hHHHHHHHHHHHHH
Q 031364 78 ENKIYNYTAIEGEGDA--NIPTI--DHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKG-GLEKEKGIFKALEA 152 (161)
Q Consensus 78 ~~~~~~y~~~eg~~~~--~~~~~--~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~le~ 152 (161)
....+..+=++.+... +...+ ..+.+-+.++|.++|.|.+++...-++.+.. |.-.++. .......+++.+-+
T Consensus 121 ~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i--P~~~~n~~~~~~~~~~~~~~~~ 198 (206)
T PF01852_consen 121 GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI--PSWLVNMVVKSQPPNFLKNLRK 198 (206)
T ss_dssp SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC--hHHHHHHHHHHhHHHHHHHHHH
Confidence 4445555444333220 00112 3455777899998888999999888887643 2444443 34444567777777
Q ss_pred HHhhCC
Q 031364 153 YALANP 158 (161)
Q Consensus 153 ~l~~~~ 158 (161)
+|.+++
T Consensus 199 ~~~~~~ 204 (206)
T PF01852_consen 199 ALKKQK 204 (206)
T ss_dssp HHHHCC
T ss_pred HHHHhc
Confidence 777665
No 69
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=55.87 E-value=16 Score=27.00 Aligned_cols=40 Identities=18% Similarity=0.427 Sum_probs=30.2
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCC
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGD 48 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGd 48 (161)
++.++..+-+.+.+-.++ +|..-++|+++|. +++++ .+++
T Consensus 3 ~~~~i~t~H~~e~v~~IL-SDP~F~lp~l~p~-ik~v~-~~~~ 42 (136)
T PF11485_consen 3 IEIEIKTSHDIEVVLTIL-SDPEFVLPRLFPP-IKSVK-VEEN 42 (136)
T ss_dssp EEEEEE-SS-HHHHHHHH-T-HHHHHHHHSTT-EEEEE--STT
T ss_pred EEEEeccCCChHheEEEe-cCCccEecccCCc-eEEEE-ecCC
Confidence 567888889999999999 6999999999995 78888 4443
No 70
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=42.63 E-value=42 Score=26.01 Aligned_cols=73 Identities=26% Similarity=0.421 Sum_probs=43.5
Q ss_pred EcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeecCCcceEEEEEEeeeccCCceeEEEEEecCC
Q 031364 12 STLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEG 91 (161)
Q Consensus 12 i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~~~eg~~ 91 (161)
++.+..++|+= .++ .+..-|..| .+.+.. +|.. ....+++..+...++.=+-|-..|.....|.|++-|-+.
T Consensus 3 ~~i~v~K~W~d----~~n-~~~~RP~sI-~v~L~~-ng~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 3 VNLSGTKIWDD----YDD-KFKKRPAKI-SVQLLA-NGEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEECC----CCC-CCCCCCCEE-EEEEEe-CCee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecC
Confidence 44555666753 222 244556545 466663 3322 345556655544444445677778788999999999876
Q ss_pred C
Q 031364 92 D 92 (161)
Q Consensus 92 ~ 92 (161)
.
T Consensus 75 ~ 75 (187)
T cd00222 75 P 75 (187)
T ss_pred C
Confidence 5
No 71
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.07 E-value=1.6e+02 Score=24.74 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=53.0
Q ss_pred EEEEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCC-CCCccEEEEEeecCCcceEEEEEEeeeccCCc-e
Q 031364 4 LTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGD-GGPGSIKKFNFVEGADWKYFKHRVDALDKENK-I 81 (161)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGd-g~~GsiR~~~~~~g~~~~~~kErl~~iD~~~~-~ 81 (161)
..+..+-+++|+++.++++| .|... +..|.-+ - -+ ++.+ | |.. .+-+|. ... ++..+.+.++ .
T Consensus 173 ~di~l~~tfn~~~~eLy~~f-ld~~r-v~~wt~S-~--a~-l~~~~~--g~f---~lf~Gn---Vtg-~~~~~e~~K~Iv 237 (301)
T KOG2936|consen 173 ADISLSATFNCRVDELYEIF-LDPER-VKAWTRS-P--AE-LEADPG--GKF---SLFDGN---VTG-EFLELEKNKKIV 237 (301)
T ss_pred ccceehhhcCCCHHHHHHHH-hcHHH-HHHhcCC-h--hh-cccCCC--Cce---EEeccc---cee-eeeeecCCCeEE
Confidence 34566778999999999999 57775 6666531 1 12 3343 3 333 333342 233 3333444443 3
Q ss_pred eEEEEEecCCCCCCCCccEEEEEEEEEEeCC-CCeeEEEEEE
Q 031364 82 YNYTAIEGEGDANIPTIDHVSYESKVVGTPD-GGSKSTVVIK 122 (161)
Q Consensus 82 ~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~-g~s~v~W~~~ 122 (161)
+.+++ +.-+ ..+-+||+++.... |.|.++...+
T Consensus 238 ~kWrl--~~Wp------~~~~atI~~~f~~~~~~t~l~~~~k 271 (301)
T KOG2936|consen 238 MKWRL--KSWP------DGHDATITLTFYESQGETKLQVKQK 271 (301)
T ss_pred EEEec--ccCC------CCccceEEEEEecCCCceEEEEEec
Confidence 46666 3443 33456777776533 5676665544
No 72
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=29.75 E-value=1.8e+02 Score=19.60 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=33.2
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCC
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 158 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~ 158 (161)
.|++++-+ |..-.+.|.+.... |++.+=..+.+.....-.++.+.+. ......+.+....||..+|
T Consensus 14 G~~IL~rN-------~r~~~GEIDiIa~~-~~~lvfVEVK~R~~~~~~~~~~~v~--~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 14 GYRILERN-------WRCRRGEIDIIARD-GDTLVFVEVKTRSSSSFGSPEEAVD--PRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp T-EEEEEE-------EEETTEEEEEEEEE-TTEEEEEEEEE----------------HHHHHHHHHHHHHHHHH-G
T ss_pred CCEEeeee-------ecCCCCcEeEEEEE-cccEEEEEEEEeecccccCHHHHCh--HHHHHHHHHHHHHHHHHCC
Confidence 46666544 34445788888774 5667666666654433223333332 2335667888888998887
No 73
>PRK14681 hypothetical protein; Provisional
Probab=26.97 E-value=2.7e+02 Score=20.94 Aligned_cols=68 Identities=16% Similarity=0.043 Sum_probs=43.3
Q ss_pred eEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCC
Q 031364 82 YNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 158 (161)
Q Consensus 82 ~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~ 158 (161)
-.|++++-+. ..-.++|.++...+++++|=..+.+.+...-..+.+.+. ...-..+.+..+.||..++
T Consensus 60 ~Gy~IL~rN~-------R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~~g~p~eaVt--~~Kqrrl~raA~~yL~~~~ 127 (158)
T PRK14681 60 HGWTTLSRNW-------HCRYGELDIVALNPEYTIVFVEVKTRRSMHYGYPQEAVT--AAKQHNLRKAACDWLLERR 127 (158)
T ss_pred CCCEEEEEEE-------eCCCCcEEEEEEcCCceEEEEEEEeccCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCC
Confidence 3577776543 333578888877544588887888766544333334443 3445678888899998765
No 74
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=26.72 E-value=2.8e+02 Score=26.01 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=41.2
Q ss_pred cEEEEEEEEEcCChHHHHHHhhhccCcccccc--cCcceeeEEEecCC-----CCCccEEEEEeecCCcceEEEEEEeee
Q 031364 3 VLTLNAEETSTLPPEKLFKLFVLHFDTLLPKV--LPQVVKNVELISGD-----GGPGSIKKFNFVEGADWKYFKHRVDAL 75 (161)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~~~d~~~llp~~--~P~~v~s~e~~eGd-----g~~GsiR~~~~~~g~~~~~~kErl~~i 75 (161)
|.++....-+.++|||--+++ ++ +.++..+ |-..|....++.+. +--|+||.|...++ .+.|. .
T Consensus 146 v~~l~e~~~vTgsaDKtIklW-k~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge----~l~~~---~ 216 (745)
T KOG0301|consen 146 VASLPENTYVTGSADKTIKLW-KG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE----VLLEM---H 216 (745)
T ss_pred eeecCCCcEEeccCcceeeec-cC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCc----eeeee---e
Confidence 344444556777777766665 23 3223222 22345555444441 23478999998433 34333 3
Q ss_pred ccCCceeEEEEE
Q 031364 76 DKENKIYNYTAI 87 (161)
Q Consensus 76 D~~~~~~~y~~~ 87 (161)
-+.++.|++++.
T Consensus 217 ghtn~vYsis~~ 228 (745)
T KOG0301|consen 217 GHTNFVYSISMA 228 (745)
T ss_pred ccceEEEEEEec
Confidence 577777777743
No 75
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=25.36 E-value=1.6e+02 Score=24.10 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=25.2
Q ss_pred EEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCCC
Q 031364 119 VVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 159 (161)
Q Consensus 119 W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~ 159 (161)
|.+.+++..+..+ ++. ..+..+.+.+.+|+++.++|+
T Consensus 249 ~~i~~~~~~~~~~-~~~---~~~~t~~~n~~lE~~Ir~~Pe 285 (305)
T TIGR02208 249 FELTVRPAMATEL-SVD---PEQEARAMNKEVEQFILPYPE 285 (305)
T ss_pred EEEEEecCCCCCC-CCC---HHHHHHHHHHHHHHHHHcCch
Confidence 6666765433222 222 356678899999999999997
No 76
>PRK14680 hypothetical protein; Provisional
Probab=25.35 E-value=2.7e+02 Score=20.25 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=42.5
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCC
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 158 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~ 158 (161)
.|++++-+. ..-.+.|.++.. +|+++|=..+.+-....-..|.+.+. ...-..+.+..+.||..++
T Consensus 24 Gy~Il~rN~-------r~~~GEIDiIa~-~~~~lVFVEVKtR~~~~~g~p~eaV~--~~K~~ri~raA~~yL~~~~ 89 (134)
T PRK14680 24 GHRILARNW-------RHGGLELDIVCE-DGDTIVFVEVKTRAAHGLTSPTDALT--HSKRHRLIRAARAWLAAHD 89 (134)
T ss_pred CCEEEEeec-------CCCCCeEEEEEE-eCCEEEEEEEEecCCCCCCChHHhCC--HHHHHHHHHHHHHHHHhCC
Confidence 577776554 333578888876 45688877777765443223334343 3445678888999998776
No 77
>PRK14688 hypothetical protein; Provisional
Probab=25.10 E-value=2.6e+02 Score=19.95 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=41.2
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCC
Q 031364 83 NYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 158 (161)
Q Consensus 83 ~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~ 158 (161)
.|++++-+. ..-.+.|.++.. +|+++|=..+.+-+...-..|.+.+. ......+.+.-+.||..++
T Consensus 24 Gy~Il~rN~-------r~~~GEIDiIa~-~~~~lVFVEVK~R~~~~~g~~~eaV~--~~K~~ri~~aA~~yL~~~~ 89 (121)
T PRK14688 24 GYSIIQTNC-------RLPEGEIDIVGQ-DGEYLVFIEVRTKRRLGYGLPAESVT--PRKKAHLMASAESYIQKHR 89 (121)
T ss_pred CCEEEEEEe-------eCCCCcEeEEEe-eCCEEEEEEEEecCCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCC
Confidence 467765543 334578888876 45678777777655433222333332 3445678888899998776
No 78
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=24.97 E-value=3.3e+02 Score=21.15 Aligned_cols=117 Identities=10% Similarity=0.008 Sum_probs=63.6
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccEEEEEeec--CC---cceEEEEEEe-eeccCC
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVE--GA---DWKYFKHRVD-ALDKEN 79 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~GsiR~~~~~~--g~---~~~~~kErl~-~iD~~~ 79 (161)
+..+..++++++++|+.+ .+... ..+|-+. +..++++|-=+.-=.|-+....+ ++ +...+-=|.- .+++..
T Consensus 48 ~k~egvi~~~~e~v~~~l-~~~e~-r~~Wd~~-~~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~ 124 (204)
T cd08904 48 YRVEGIIPESPAKLIQFM-YQPEH-RIKWDKS-LQVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNM 124 (204)
T ss_pred EEEEEEecCCHHHHHHHH-hccch-hhhhccc-ccceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCE
Confidence 467888999999999999 46555 6899985 66777775411000122211121 11 1112211111 124444
Q ss_pred ceeEEEEEecCCCCCCCCccEE------EEEEEEEEeCC--CCeeEEEEEEEEeCCC
Q 031364 80 KIYNYTAIEGEGDANIPTIDHV------SYESKVVGTPD--GGSKSTVVIKFYPKPG 128 (161)
Q Consensus 80 ~~~~y~~~eg~~~~~~~~~~~y------~~t~~v~~~~~--g~s~v~W~~~y~~~~~ 128 (161)
..+.+.-++-+-. ++-+.| .+=+-+.|.++ ++|.++|-+..++++.
T Consensus 125 ~ii~~~sv~Hp~~---Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 125 NIVSSVSVEYPQC---PPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred EEEEEEecccCCC---CCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 4444444443321 222332 23445677655 3799999999888864
No 79
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=22.94 E-value=1.8e+02 Score=23.59 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=25.3
Q ss_pred EEEEEEEeCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCCC
Q 031364 118 TVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 159 (161)
Q Consensus 118 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~ 159 (161)
.+.+.|++.....+ ++. ..+.+..+.+.+|+++.++|+
T Consensus 238 ~y~i~~~~~~~~~~-~~~---~~~~t~~~~~~lE~~Ir~~Pe 275 (295)
T PRK05645 238 GYKVILEAAPEDMY-STD---VEVSAAAMSKVVERYVRAYPS 275 (295)
T ss_pred eEEEEEecCCcCCC-CCC---HHHHHHHHHHHHHHHHHcCcH
Confidence 46677765432211 222 346678899999999999997
No 80
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=22.83 E-value=1.7e+02 Score=23.65 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHhhCCC
Q 031364 139 GLEKEKGIFKALEAYALANPN 159 (161)
Q Consensus 139 ~~~~~~~~~k~le~~l~~~~~ 159 (161)
..+....+.+.+|+.+.++|+
T Consensus 259 ~~~~t~~~n~~lE~~Ir~~Pe 279 (290)
T PRK06628 259 CYNIMLNINQMLGEWVKQNPA 279 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCch
Confidence 345678899999999999997
No 81
>PF11979 DUF3480: Domain of unknown function (DUF3480); InterPro: IPR022557 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 350 to 362 amino acids in length. This domain is found C-terminal to PF01363 from PFAM.
Probab=22.49 E-value=4.5e+02 Score=22.63 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=37.4
Q ss_pred EEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEeCCCCC---C--ChhhhhhhHHHHHHHHHHHHHHHh
Q 031364 86 AIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAE---I--KEEQVKGGLEKEKGIFKALEAYAL 155 (161)
Q Consensus 86 ~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~---~--~~~~~~~~~~~~~~~~k~le~~l~ 155 (161)
-|+|-.+ .++.+++..-...-.+ .+-.++||--|.-..+.. + +.+.-.-..+.+.+...+|..||.
T Consensus 238 pIDg~sl---egv~s~ri~~~~~~~~-~~~~IRwTeVF~l~~~~~~~~~~~~~~~~~laE~IA~a~c~AL~PhL~ 308 (356)
T PF11979_consen 238 PIDGKSL---EGVPSVRIFQGSEYKA-NGKIIRWTEVFFLQKDDDSNGPSDPSDHSRLAEQIAKACCAALCPHLK 308 (356)
T ss_pred CCCCcee---cCceeeeecccceeec-CCeEEEEEEEEEEecCccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 3455554433222233 357999999998766532 2 122222245566778888888875
No 82
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=21.06 E-value=2.4e+02 Score=18.04 Aligned_cols=12 Identities=0% Similarity=0.077 Sum_probs=6.2
Q ss_pred cEEEEEEEEEEe
Q 031364 99 DHVSYESKVVGT 110 (161)
Q Consensus 99 ~~y~~t~~v~~~ 110 (161)
..|..++.+...
T Consensus 65 ~~y~l~v~a~D~ 76 (93)
T PF00028_consen 65 SSYQLTVRATDS 76 (93)
T ss_dssp SEEEEEEEEEET
T ss_pred CEEEEEEEEEEC
Confidence 455555555444
No 83
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=20.67 E-value=75 Score=21.71 Aligned_cols=29 Identities=38% Similarity=0.493 Sum_probs=22.3
Q ss_pred CccEEEEEeecCCcceEEEEEEeeeccCCceeEEEEE
Q 031364 51 PGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAI 87 (161)
Q Consensus 51 ~GsiR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~~~ 87 (161)
+|-.+.+.+++|. |+|++|.++++ -|++=
T Consensus 25 ~g~~kEf~lpsGk-------R~D~id~~~k~-IyELK 53 (89)
T PF15650_consen 25 GGREKEFRLPSGK-------RPDFIDFETKI-IYELK 53 (89)
T ss_pred ccceeeeecCCCC-------cCccccCCcce-EEEec
Confidence 4678888888874 89999999974 46663
No 84
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.65 E-value=2.6e+02 Score=23.86 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=12.7
Q ss_pred EeCCCCeeEEEEEEEEe
Q 031364 109 GTPDGGSKSTVVIKFYP 125 (161)
Q Consensus 109 ~~~~g~s~v~W~~~y~~ 125 (161)
..+++||+=-|.+.|..
T Consensus 305 StGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 305 STGDDGCVRLWKANYNN 321 (361)
T ss_pred ecCCCceeeehhhhhhh
Confidence 45677899999887753
No 85
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=20.54 E-value=4.3e+02 Score=20.80 Aligned_cols=138 Identities=9% Similarity=-0.052 Sum_probs=69.7
Q ss_pred EEEEEEEcCChHHHHHHhhhccCcccccccCcceeeEEEecCCCCCccE-EEEEeecCC----cceEEEEEE-eeeccCC
Q 031364 6 LNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSI-KKFNFVEGA----DWKYFKHRV-DALDKEN 79 (161)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~llp~~~P~~v~s~e~~eGdg~~Gsi-R~~~~~~g~----~~~~~kErl-~~iD~~~ 79 (161)
+..|..|+..++++|+.+ .+... ..+|=|. ++++++++-=+.-=+| |..+....+ |...+-=+. ....+.-
T Consensus 49 ~R~Egvv~~~~~ev~d~v-~~~~~-r~~Wd~~-v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~ 125 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHI-RPGPY-RLDWDSL-MTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL 125 (202)
T ss_pred EEEEEEecCCHHHHHHHH-hcccc-hhcccch-hhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe
Confidence 356777889999999999 46443 5799986 8899988753211123 344433221 111111111 1112222
Q ss_pred ceeEEEEEecCCCCCCCCccEEEE-----EEEEEEeCCC--CeeEEEEEEEEeCCCCCCChhhhhhhH-HHHHHHHHHHH
Q 031364 80 KIYNYTAIEGEGDANIPTIDHVSY-----ESKVVGTPDG--GSKSTVVIKFYPKPGAEIKEEQVKGGL-EKEKGIFKALE 151 (161)
Q Consensus 80 ~~~~y~~~eg~~~~~~~~~~~y~~-----t~~v~~~~~g--~s~v~W~~~y~~~~~~~~~~~~~~~~~-~~~~~~~k~le 151 (161)
.++.-++ +...+ .+ ...++ -+-+.|.+++ .|.++|-+..+.++. .|...++.++ .....++..|-
T Consensus 126 ~s~gvs~-~~~~~---pp-g~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~--LPqsiIdq~~~~~~~~F~~~Lr 198 (202)
T cd08902 126 LSCGVSI-EYEEA---RP-NFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM--LPQSAVDTAMASTLVNFYSDLK 198 (202)
T ss_pred EEEEeee-cCCCC---CC-CeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC--ccHHHHHHHhhHHHHHHHHHHH
Confidence 2222222 22211 11 22233 2456676554 789999999888764 3344444222 22234444444
Q ss_pred HH
Q 031364 152 AY 153 (161)
Q Consensus 152 ~~ 153 (161)
++
T Consensus 199 k~ 200 (202)
T cd08902 199 KA 200 (202)
T ss_pred Hh
Confidence 43
No 86
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=20.52 E-value=2.7e+02 Score=24.14 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=30.4
Q ss_pred cEEEEEeecCCcceEEEEEEeeeccCCceeEEEEEecCCCCCCCCccEEEEEEEE
Q 031364 53 SIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKV 107 (161)
Q Consensus 53 siR~~~~~~g~~~~~~kErl~~iD~~~~~~~y~~~eg~~~~~~~~~~~y~~t~~v 107 (161)
+|+.++-+..| ..+.|-. +|++++.++|--++-.. .++..+...++
T Consensus 17 sIKi~nAG~~G--~~VveGt--idE~~K~inFPRld~~T-----nFsaL~~EA~L 62 (442)
T PF15416_consen 17 SIKILNAGADG--NTVVEGT--IDEDNKTINFPRLDVET-----NFSALKFEAEL 62 (442)
T ss_pred eEEEeecCCCC--CeeEEEE--EcCcCceeccccccccc-----CccceeeEEec
Confidence 57777776544 3778864 79999999997765443 35544444444
No 87
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=20.38 E-value=4.3e+02 Score=20.72 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=38.5
Q ss_pred CCcceEEEEEEeeeccCCceeEEEEEecCCCCCCCCccEEEEEEEEEEeCCCCeeEEEEEEEEe
Q 031364 62 GADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYP 125 (161)
Q Consensus 62 g~~~~~~kErl~~iD~~~~~~~y~~~eg~~~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~ 125 (161)
|.++...++-|-.+-+..-.++|..-+...+..+..=-+|++..+|+.. |+.|.+.|...|+-
T Consensus 135 Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~aks~f~Dd-D~~~~l~~~w~feI 197 (200)
T PF02115_consen 135 GIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSGMLARGSYTAKSKFVDD-DKNVHLEWEWSFEI 197 (200)
T ss_dssp TEEEEEEEEEEEEE--ESSEEEEEEEEEE--BSTTT-EEEEEEEEEEET-TSSECEEEEEEEEE
T ss_pred CEeEcccceeeeccCCCCcceEEeCcCccCCCceeEeeeeeEEEEEEeC-CCcEEEEEEEEEEE
Confidence 4455666677777888777778877664332101123688888898765 45688888777764
Done!