Query 031365
Match_columns 161
No_of_seqs 225 out of 1500
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 13:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 5.9E-30 1.3E-34 186.7 12.7 105 51-160 30-135 (142)
2 PRK10743 heat shock protein Ib 100.0 2.2E-29 4.7E-34 183.0 13.2 102 54-160 35-137 (137)
3 COG0071 IbpA Molecular chapero 100.0 8E-29 1.7E-33 182.1 14.8 109 51-160 38-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 100.0 1.1E-27 2.4E-32 163.1 11.9 92 55-146 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1.4E-25 3E-30 155.0 13.7 101 57-160 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 1.3E-25 2.8E-30 153.1 11.8 91 54-146 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 4.8E-25 1.1E-29 149.7 12.8 89 54-146 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 1.4E-23 3.1E-28 141.3 11.4 82 57-146 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 6.1E-23 1.3E-27 137.4 11.2 82 57-146 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 7.6E-23 1.7E-27 137.2 11.1 82 58-147 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 6.4E-23 1.4E-27 136.5 9.5 79 57-146 2-81 (81)
12 cd06475 ACD_HspB1_like Alpha c 99.9 4.7E-22 1E-26 133.9 10.6 82 56-145 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.9 6.7E-22 1.4E-26 132.3 11.2 81 58-146 2-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.9 7.8E-22 1.7E-26 133.1 10.8 83 60-146 4-87 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 1.9E-21 4.2E-26 129.9 11.5 88 57-146 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.9 1.9E-21 4.1E-26 131.0 10.5 80 61-145 6-86 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.9 6.4E-21 1.4E-25 127.4 10.9 79 59-145 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.9 5.3E-21 1.2E-25 127.8 9.5 77 62-146 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 4.7E-20 1E-24 141.6 7.3 115 47-161 78-196 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 1.3E-17 2.8E-22 113.1 10.0 81 58-146 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 2E-16 4.2E-21 119.1 12.0 100 53-160 62-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 1.6E-14 3.5E-19 93.1 9.9 80 58-146 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 5.3E-12 1.1E-16 82.7 9.0 71 58-149 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.2 2.6E-10 5.6E-15 85.5 10.4 82 50-151 88-172 (177)
25 cd06463 p23_like Proteins cont 99.0 2.3E-09 5.1E-14 70.1 9.2 75 59-149 2-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 2.2E-08 4.9E-13 66.1 7.7 77 57-149 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 1.8E-06 3.9E-11 55.8 11.1 77 54-146 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.3 9.6E-06 2.1E-10 56.4 10.3 78 54-148 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.2 1.1E-05 2.3E-10 66.1 8.9 65 62-145 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.2 2.5E-05 5.5E-10 51.7 8.7 77 57-149 1-77 (84)
31 cd06488 p23_melusin_like p23_l 98.0 0.00017 3.7E-09 48.2 9.7 79 55-149 2-80 (87)
32 cd06467 p23_NUDC_like p23_like 97.9 0.00012 2.7E-09 48.2 8.6 74 57-149 2-77 (85)
33 cd06468 p23_CacyBP p23_like do 97.9 0.00022 4.9E-09 47.8 10.0 79 55-149 3-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00026 5.7E-09 47.0 9.1 75 56-149 1-77 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.7 0.00093 2E-08 45.4 9.7 78 53-150 5-84 (93)
36 cd00237 p23 p23 binds heat sho 97.6 0.002 4.4E-08 44.8 10.5 78 54-149 2-79 (106)
37 PLN03088 SGT1, suppressor of 97.0 0.0055 1.2E-07 51.1 9.1 81 53-149 156-236 (356)
38 KOG1309 Suppressor of G2 allel 96.9 0.0043 9.2E-08 46.9 7.0 80 53-148 3-82 (196)
39 cd06490 p23_NCB5OR p23_like do 96.4 0.11 2.4E-06 34.6 10.2 77 56-150 1-81 (87)
40 cd06492 p23_mNUDC_like p23-lik 96.3 0.054 1.2E-06 36.2 8.6 74 57-149 2-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 96.3 0.092 2E-06 36.2 9.7 80 53-148 4-86 (102)
42 PF14913 DPCD: DPCD protein fa 93.3 0.97 2.1E-05 34.6 8.6 81 49-148 82-170 (194)
43 KOG2265 Nuclear distribution p 89.6 3.9 8.4E-05 31.0 8.4 82 49-149 14-97 (179)
44 KOG3158 HSP90 co-chaperone p23 88.9 2 4.4E-05 32.4 6.4 81 51-149 5-85 (180)
45 cd06482 ACD_HspB10 Alpha cryst 84.0 2.4 5.3E-05 28.2 4.3 34 115-149 9-42 (87)
46 PF13349 DUF4097: Domain of un 82.9 15 0.00033 26.4 9.4 82 54-143 66-147 (166)
47 KOG1667 Zn2+-binding protein M 82.1 9.3 0.0002 30.8 7.4 86 51-151 212-297 (320)
48 cd06470 ACD_IbpA-B_like Alpha- 79.7 6.7 0.00015 25.9 5.3 35 115-150 12-46 (90)
49 cd06476 ACD_HspB2_like Alpha c 77.2 7.5 0.00016 25.5 4.8 33 115-148 8-40 (83)
50 cd06478 ACD_HspB4-5-6 Alpha-cr 76.9 6.9 0.00015 25.5 4.6 32 115-147 8-39 (83)
51 cd06477 ACD_HspB3_Like Alpha c 76.4 6.1 0.00013 26.0 4.2 33 115-148 8-40 (83)
52 cd06497 ACD_alphaA-crystallin_ 75.3 8.2 0.00018 25.4 4.6 32 115-147 11-42 (86)
53 cd06479 ACD_HspB7_like Alpha c 75.0 7.5 0.00016 25.4 4.3 33 115-148 9-41 (81)
54 PRK10743 heat shock protein Ib 74.9 7.7 0.00017 28.0 4.8 33 116-149 47-79 (137)
55 PF12992 DUF3876: Domain of un 73.0 15 0.00032 25.0 5.5 40 52-92 24-68 (95)
56 COG5091 SGT1 Suppressor of G2 73.0 2.4 5.1E-05 34.6 1.8 83 51-148 174-256 (368)
57 cd06471 ACD_LpsHSP_like Group 72.0 7.1 0.00015 25.7 3.8 30 63-93 62-91 (93)
58 PF00011 HSP20: Hsp20/alpha cr 71.9 12 0.00026 24.8 4.9 36 63-99 55-91 (102)
59 PF08308 PEGA: PEGA domain; I 71.4 18 0.00038 22.4 5.4 40 56-95 27-67 (71)
60 cd06464 ACD_sHsps-like Alpha-c 71.2 10 0.00022 24.1 4.3 34 60-94 53-87 (88)
61 PF01954 DUF104: Protein of un 70.7 4.3 9.4E-05 25.2 2.3 18 129-146 3-20 (60)
62 cd06481 ACD_HspB9_like Alpha c 69.3 13 0.00027 24.6 4.5 33 115-148 8-40 (87)
63 cd06526 metazoan_ACD Alpha-cry 68.3 11 0.00024 24.3 4.0 34 115-149 8-41 (83)
64 cd06472 ACD_ScHsp26_like Alpha 67.6 10 0.00022 25.0 3.8 31 62-93 59-90 (92)
65 cd06475 ACD_HspB1_like Alpha c 67.0 16 0.00035 24.0 4.6 33 115-148 11-43 (86)
66 cd06498 ACD_alphaB-crystallin_ 66.9 20 0.00044 23.4 5.1 32 115-147 8-39 (84)
67 PRK11597 heat shock chaperone 66.2 15 0.00032 26.8 4.7 32 116-148 45-76 (142)
68 cd06480 ACD_HspB8_like Alpha-c 64.6 16 0.00035 24.5 4.3 30 63-93 58-89 (91)
69 cd06469 p23_DYX1C1_like p23_li 63.5 24 0.00052 22.0 4.9 33 63-96 36-69 (78)
70 COG0071 IbpA Molecular chapero 59.5 29 0.00064 24.9 5.2 35 63-98 100-135 (146)
71 PF04972 BON: BON domain; Int 59.1 21 0.00045 21.5 3.8 25 72-97 12-36 (64)
72 KOG3260 Calcyclin-binding prot 58.6 48 0.001 25.5 6.2 78 56-149 77-155 (224)
73 PRK05518 rpl6p 50S ribosomal p 54.0 74 0.0016 24.1 6.8 45 76-145 13-57 (180)
74 cd06467 p23_NUDC_like p23_like 53.5 32 0.0007 21.8 4.2 30 116-145 10-39 (85)
75 TIGR03654 L6_bact ribosomal pr 51.3 82 0.0018 23.6 6.6 44 76-145 11-54 (175)
76 KOG3591 Alpha crystallins [Pos 50.3 29 0.00063 26.1 4.0 30 69-98 121-151 (173)
77 TIGR03653 arch_L6P archaeal ri 50.1 1E+02 0.0022 23.1 6.9 45 76-145 7-51 (170)
78 PRK05498 rplF 50S ribosomal pr 47.7 90 0.0019 23.4 6.4 44 76-145 12-55 (178)
79 cd06494 p23_NUDCD2_like p23-li 47.0 42 0.00092 22.4 4.0 30 115-144 16-45 (93)
80 PRK14290 chaperone protein Dna 46.1 1.3E+02 0.0028 25.2 7.7 30 119-148 277-306 (365)
81 KOG3413 Mitochondrial matrix p 45.5 11 0.00023 27.8 0.9 25 122-146 65-89 (156)
82 CHL00140 rpl6 ribosomal protei 44.1 94 0.002 23.4 6.0 44 76-145 12-55 (178)
83 PRK10568 periplasmic protein; 44.0 41 0.0009 25.8 4.1 25 72-97 73-97 (203)
84 PF05455 GvpH: GvpH; InterPro 43.0 1.2E+02 0.0025 23.1 6.2 39 61-100 134-172 (177)
85 cd00503 Frataxin Frataxin is a 42.4 29 0.00062 23.9 2.7 18 129-146 28-45 (105)
86 PRK00446 cyaY frataxin-like pr 40.1 29 0.00063 23.9 2.4 17 131-147 29-45 (105)
87 PTZ00027 60S ribosomal protein 39.7 1.6E+02 0.0035 22.5 6.7 47 76-145 13-59 (190)
88 TIGR03421 FeS_CyaY iron donor 39.5 29 0.00062 23.8 2.3 17 130-146 26-42 (102)
89 PF01491 Frataxin_Cyay: Fratax 39.0 45 0.00097 23.0 3.3 18 129-146 30-47 (109)
90 cd06493 p23_NUDCD1_like p23_NU 37.3 81 0.0018 20.3 4.2 30 116-145 10-39 (85)
91 PF14814 UB2H: Bifunctional tr 36.6 96 0.0021 20.2 4.5 42 103-144 30-73 (85)
92 cd08023 GH16_laminarinase_like 35.7 2E+02 0.0043 22.0 6.9 50 73-125 34-91 (235)
93 cd02178 GH16_beta_agarase Beta 35.0 1.8E+02 0.0038 22.9 6.6 44 81-125 60-110 (258)
94 TIGR00251 conserved hypothetic 34.1 78 0.0017 21.1 3.7 37 58-96 1-40 (87)
95 COG4004 Uncharacterized protei 33.9 1.1E+02 0.0024 20.7 4.3 34 56-94 26-59 (96)
96 PF13014 KH_3: KH domain 32.4 63 0.0014 17.9 2.7 21 141-161 23-43 (43)
97 PRK11198 LysM domain/BON super 32.4 68 0.0015 23.2 3.5 26 72-98 38-63 (147)
98 TIGR03422 mito_frataxin fratax 31.8 37 0.00081 23.0 1.9 16 132-147 30-45 (97)
99 PTZ00179 60S ribosomal protein 30.6 1.9E+02 0.0042 22.0 5.8 47 76-145 12-58 (189)
100 COG2880 Uncharacterized protei 29.5 4.5 9.8E-05 25.7 -2.7 12 131-142 7-18 (67)
101 cd02175 GH16_lichenase lichena 29.2 1.8E+02 0.0039 22.0 5.6 47 76-125 31-80 (212)
102 PRK14299 chaperone protein Dna 28.6 2.7E+02 0.006 22.4 6.8 33 116-148 203-237 (291)
103 PF07873 YabP: YabP family; I 27.8 53 0.0011 20.4 2.0 22 73-95 22-43 (66)
104 KOG3247 Uncharacterized conser 27.1 34 0.00073 29.5 1.2 76 53-149 3-81 (466)
105 cd02177 GH16_kappa_carrageenas 25.8 3.5E+02 0.0077 21.7 6.9 43 81-124 46-103 (269)
106 PF03983 SHD1: SLA1 homology d 25.5 81 0.0018 20.2 2.5 30 57-86 14-43 (70)
107 PF11730 DUF3297: Protein of u 25.2 1E+02 0.0023 19.6 2.9 28 134-161 38-65 (71)
108 PRK14301 chaperone protein Dna 25.1 4.1E+02 0.009 22.3 9.1 29 120-148 272-300 (373)
109 PRK14284 chaperone protein Dna 24.9 4.3E+02 0.0092 22.4 9.3 30 120-149 286-317 (391)
110 PF12624 Chorein_N: N-terminal 24.8 1.1E+02 0.0024 21.1 3.3 22 72-94 18-39 (118)
111 PF08845 SymE_toxin: Toxin Sym 24.8 1.2E+02 0.0025 18.5 3.0 22 70-92 34-56 (57)
112 PRK05090 hypothetical protein; 24.0 1.8E+02 0.004 19.6 4.2 38 58-97 4-42 (95)
113 PF09985 DUF2223: Domain of un 23.2 3.5E+02 0.0076 21.2 6.3 97 52-148 32-143 (228)
114 PF03681 UPF0150: Uncharacteri 23.2 1.1E+02 0.0023 17.4 2.6 20 56-75 4-25 (48)
115 TIGR02856 spore_yqfC sporulati 22.9 67 0.0015 21.2 1.8 25 70-95 37-61 (85)
116 PF13620 CarboxypepD_reg: Carb 22.8 1.4E+02 0.0031 18.4 3.4 29 63-91 48-77 (82)
117 COG0097 RplF Ribosomal protein 22.7 3.4E+02 0.0075 20.6 5.8 21 74-95 10-30 (178)
118 PF10988 DUF2807: Protein of u 22.4 2.3E+02 0.005 20.4 4.9 30 119-149 24-53 (181)
119 PLN02711 Probable galactinol-- 22.2 2.1E+02 0.0046 26.8 5.3 37 121-159 737-775 (777)
120 TIGR02892 spore_yabP sporulati 21.6 76 0.0016 21.0 1.9 22 73-95 21-42 (85)
121 PF13141 DUF3979: Protein of u 21.6 2.7E+02 0.0058 18.9 4.5 53 102-159 14-69 (114)
122 cd00413 Glyco_hydrolase_16 gly 21.4 2.7E+02 0.0059 20.6 5.2 15 111-125 65-79 (210)
123 cd02180 GH16_fungal_KRE6_gluca 20.9 1.5E+02 0.0033 24.2 3.9 46 76-124 40-90 (295)
124 PF06964 Alpha-L-AF_C: Alpha-L 20.9 1.9E+02 0.0041 21.2 4.2 28 120-147 149-176 (177)
125 cd02179 GH16_beta_GRP beta-1,3 20.7 4.9E+02 0.011 21.5 8.1 13 83-96 43-55 (321)
126 PRK13726 conjugal transfer pil 20.6 2.1E+02 0.0045 21.8 4.4 50 77-145 131-180 (188)
127 COG1965 CyaY Protein implicate 20.6 1.1E+02 0.0023 21.3 2.5 17 131-147 30-46 (106)
128 PF00347 Ribosomal_L6: Ribosom 20.5 2.2E+02 0.0048 17.5 4.0 44 76-145 2-47 (77)
129 PF03368 Dicer_dimer: Dicer di 20.4 1.7E+02 0.0036 19.3 3.4 27 49-75 17-43 (90)
130 PF14014 DUF4230: Protein of u 20.1 63 0.0014 23.1 1.4 26 124-149 50-80 (157)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=5.9e-30 Score=186.71 Aligned_cols=105 Identities=22% Similarity=0.335 Sum_probs=93.3
Q ss_pred ccCceeeEEE-CCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccC
Q 031365 51 IVNARVDWKE-TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMD 129 (161)
Q Consensus 51 ~~~p~~dv~e-~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 129 (161)
...|++||+| ++++|+|+++|||++++||+|.++++ .|+|+|+++.+ .++.+|+++|+.+|+|+|+|.||++||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~ 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEVS 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccc--cCCCcEEEEEEeCcEEEEEEECCCCcccC
Confidence 3458999998 57799999999999999999999984 99999997643 35678999999999999999999999998
Q ss_pred CeEEEEeCCEEEEEEeCcCCCCCCeeEEecc
Q 031365 130 QIKASMESGVLTVTVPKVEVTKPDVKAIAIS 160 (161)
Q Consensus 130 ~i~A~~~nGvL~I~~pK~~~~~~~~~~I~I~ 160 (161)
+|+|+||||+|++||..++..++++|+|+
T Consensus 107 --~A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 107 --GATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred --cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 79999999999999986656677899997
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=2.2e-29 Score=183.05 Aligned_cols=102 Identities=20% Similarity=0.344 Sum_probs=92.3
Q ss_pred ceeeEEE-CCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeE
Q 031365 54 ARVDWKE-TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIK 132 (161)
Q Consensus 54 p~~dv~e-~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
|++||++ ++++|+|+++|||++++||+|+++++ .|+|+|+++.+ .++.+|+++|+.+|+|+|+|.||++||.+ +
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADE--QKERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECcc--ccCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 8899994 89999999999999999999999985 99999997654 34578999999999999999999999999 5
Q ss_pred EEEeCCEEEEEEeCcCCCCCCeeEEecc
Q 031365 133 ASMESGVLTVTVPKVEVTKPDVKAIAIS 160 (161)
Q Consensus 133 A~~~nGvL~I~~pK~~~~~~~~~~I~I~ 160 (161)
|+|+||||+|++||..++..++++|+|+
T Consensus 110 A~~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence 9999999999999986666677999985
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8e-29 Score=182.11 Aligned_cols=109 Identities=40% Similarity=0.641 Sum_probs=101.8
Q ss_pred ccCceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCC
Q 031365 51 IVNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQ 130 (161)
Q Consensus 51 ~~~p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (161)
.+.|++||++++++|+|.++|||++++||+|+++++ .|+|+|++..+...++..++++|+.+|.|+|+|.||..|+++.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 467999999999999999999999999999999985 9999999988666778899999999999999999999999999
Q ss_pred eEEEEeCCEEEEEEeCcCCCCCCeeEEecc
Q 031365 131 IKASMESGVLTVTVPKVEVTKPDVKAIAIS 160 (161)
Q Consensus 131 i~A~~~nGvL~I~~pK~~~~~~~~~~I~I~ 160 (161)
++|+|+||+|+|++||..+++.+.++|+|+
T Consensus 117 ~~A~~~nGvL~I~lpk~~~~~~~~~~i~I~ 146 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146 (146)
T ss_pred eeeEeeCcEEEEEEeccccccccCceeecC
Confidence 999999999999999999987677888875
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=1.1e-27 Score=163.15 Aligned_cols=92 Identities=76% Similarity=1.199 Sum_probs=85.8
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEE
Q 031365 55 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS 134 (161)
Q Consensus 55 ~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 134 (161)
++||+|++++|+|.++|||++++||+|++++++.|+|+|++..+...++..++++|+.+|.|.|+|.||.+|+.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999864589999998776556678999999999999999999999999999999
Q ss_pred EeCCEEEEEEeC
Q 031365 135 MESGVLTVTVPK 146 (161)
Q Consensus 135 ~~nGvL~I~~pK 146 (161)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.94 E-value=1.4e-25 Score=155.00 Aligned_cols=101 Identities=49% Similarity=0.776 Sum_probs=84.4
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEe
Q 031365 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 136 (161)
Q Consensus 57 dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (161)
||.+++++|.|.++|||+.+++|+|+++++ .|+|+|.+. ....+..++..|+.++.|.|+|.||.++|.++|+|+|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 799999999999999999999999999985 999999998 23455688888999999999999999999999999999
Q ss_pred CCEEEEEEeCcCCCCC-CeeEEecc
Q 031365 137 SGVLTVTVPKVEVTKP-DVKAIAIS 160 (161)
Q Consensus 137 nGvL~I~~pK~~~~~~-~~~~I~I~ 160 (161)
||+|+|++||....+. ..++|+|+
T Consensus 78 ~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 78 NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999988754 67999986
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=1.3e-25 Score=153.09 Aligned_cols=91 Identities=46% Similarity=0.747 Sum_probs=82.5
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeec--CCCCcEEEEeeeeeEEEEEEECCCCCccCCe
Q 031365 54 ARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKE--DKNDTWHRVERSSGMFSRRFRLPENVKMDQI 131 (161)
Q Consensus 54 p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~--~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (161)
+++||+|++++|+|.++|||++++||+|.+.++ .|+|+|+++...+ ..+..++++|+.+|+|.|+|.|| +++.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 368999999999999999999999999999985 9999999876432 23357999999999999999999 7999999
Q ss_pred EEEEeCCEEEEEEeC
Q 031365 132 KASMESGVLTVTVPK 146 (161)
Q Consensus 132 ~A~~~nGvL~I~~pK 146 (161)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.93 E-value=4.8e-25 Score=149.65 Aligned_cols=89 Identities=21% Similarity=0.455 Sum_probs=81.9
Q ss_pred ceeeEEECC-CeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeE
Q 031365 54 ARVDWKETP-EAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIK 132 (161)
Q Consensus 54 p~~dv~e~~-d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
|++||++++ ++|+|.++|||++++||+|.++++ .|+|+|+++.... ++.+|+++|+.+|+|.|+|.||.++|.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 679999975 899999999999999999999985 9999999987755 5678999999999999999999999975 9
Q ss_pred EEEeCCEEEEEEeC
Q 031365 133 ASMESGVLTVTVPK 146 (161)
Q Consensus 133 A~~~nGvL~I~~pK 146 (161)
|+|+||+|+|++|+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.91 E-value=1.4e-23 Score=141.29 Aligned_cols=82 Identities=29% Similarity=0.524 Sum_probs=73.4
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEE-
Q 031365 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM- 135 (161)
Q Consensus 57 dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 135 (161)
+|.+++++|.|.++|||++++||+|++.++ .|+|+|++.... ++..|+++| |.|+|.||++||.++|+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQ--DDHGYISRE-----FHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccee--CCCCEEEEE-----EEEEEECCCCCChHHeEEEeC
Confidence 799999999999999999999999999985 999999975432 334566654 99999999999999999999
Q ss_pred eCCEEEEEEeC
Q 031365 136 ESGVLTVTVPK 146 (161)
Q Consensus 136 ~nGvL~I~~pK 146 (161)
+||+|+|++||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.90 E-value=6.1e-23 Score=137.39 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=72.1
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEE-
Q 031365 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM- 135 (161)
Q Consensus 57 dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 135 (161)
+|.+++++|.|.++|||++++||+|++.++ .|+|+|++.... ++..|+.+| |.|+|.||.+||.++|+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQ--DEHGFISRE-----FHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEc--CCCCEEEEE-----EEEEEECCCCcChHHeEEEEC
Confidence 478899999999999999999999999985 999999875432 234566554 99999999999999999999
Q ss_pred eCCEEEEEEeC
Q 031365 136 ESGVLTVTVPK 146 (161)
Q Consensus 136 ~nGvL~I~~pK 146 (161)
+||+|+|++||
T Consensus 73 ~dGvL~I~~PK 83 (83)
T cd06478 73 ADGVLTISGPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 69999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.90 E-value=7.6e-23 Score=137.17 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=71.7
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEe-
Q 031365 58 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME- 136 (161)
Q Consensus 58 v~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 136 (161)
+.+++++|.|.++|||++++||+|++.+ +.|+|+|++..+. ++..|+++ .|.|+|.||.+||+++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence 6788999999999999999999999998 4999999876543 33455544 4999999999999999999995
Q ss_pred CCEEEEEEeCc
Q 031365 137 SGVLTVTVPKV 147 (161)
Q Consensus 137 nGvL~I~~pK~ 147 (161)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.89 E-value=6.4e-23 Score=136.50 Aligned_cols=79 Identities=19% Similarity=0.405 Sum_probs=71.4
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEE-
Q 031365 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM- 135 (161)
Q Consensus 57 dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 135 (161)
||.|++++|.|.++|||++++||+|++++ +.|+|+|+++.+. +..+|+|+|+|.||.+||+++|+|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~----------~~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD----------GTVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC----------CCEEEEEEEEEECCCCcCHHHeEEEec
Confidence 68999999999999999999999999998 4999999986432 12478999999999999999999997
Q ss_pred eCCEEEEEEeC
Q 031365 136 ESGVLTVTVPK 146 (161)
Q Consensus 136 ~nGvL~I~~pK 146 (161)
+||+|+|++++
T Consensus 71 ~~GvL~I~~~~ 81 (81)
T cd06479 71 EDGTLTIKARR 81 (81)
T ss_pred CCCEEEEEecC
Confidence 99999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.88 E-value=4.7e-22 Score=133.93 Aligned_cols=82 Identities=26% Similarity=0.506 Sum_probs=71.8
Q ss_pred eeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEE
Q 031365 56 VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM 135 (161)
Q Consensus 56 ~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 135 (161)
.||+|++++|.|.++|||+++++|+|++.++ .|+|+|++.... +...+. .++|+|+|.||.+||.++|+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQ--DEHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCc--CCCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 5899999999999999999999999999984 999999986432 222332 45899999999999999999999
Q ss_pred e-CCEEEEEEe
Q 031365 136 E-SGVLTVTVP 145 (161)
Q Consensus 136 ~-nGvL~I~~p 145 (161)
. ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 6 999999998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.88 E-value=6.7e-22 Score=132.28 Aligned_cols=81 Identities=20% Similarity=0.364 Sum_probs=69.7
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEe-
Q 031365 58 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME- 136 (161)
Q Consensus 58 v~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 136 (161)
+..++++|.|.++|||++++||+|++.++ .|+|+|++.... +...++. +.|+|+|.||.+||+++|+|+|.
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~~-----~eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRM--DRHGFVS-----REFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccee--cCCCEEE-----EEEEEEEECCCCCChhhEEEEecC
Confidence 45678999999999999999999999985 999999985432 2333544 45999999999999999999995
Q ss_pred CCEEEEEEeC
Q 031365 137 SGVLTVTVPK 146 (161)
Q Consensus 137 nGvL~I~~pK 146 (161)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.88 E-value=7.8e-22 Score=133.10 Aligned_cols=83 Identities=29% Similarity=0.543 Sum_probs=72.4
Q ss_pred ECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEE-eCC
Q 031365 60 ETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM-ESG 138 (161)
Q Consensus 60 e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~-~nG 138 (161)
+..++|.|.++|||++++||+|++++ +.|+|+|++..+...+...|. +.+|+|.|+|.||++||.+.|+|+| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 45689999999999999999999997 599999998765544444554 3489999999999999999999999 999
Q ss_pred EEEEEEeC
Q 031365 139 VLTVTVPK 146 (161)
Q Consensus 139 vL~I~~pK 146 (161)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=1.9e-21 Score=129.88 Aligned_cols=88 Identities=60% Similarity=0.902 Sum_probs=80.6
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEe
Q 031365 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 136 (161)
Q Consensus 57 dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (161)
++.|++++|+|.++|||+++++|+|++.+ +.|.|+|++........ .+...++..+.|.|+|.||.++|.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 47899999999999999999999999998 49999999987654433 78888999999999999999999999999999
Q ss_pred CCEEEEEEeC
Q 031365 137 SGVLTVTVPK 146 (161)
Q Consensus 137 nGvL~I~~pK 146 (161)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.87 E-value=1.9e-21 Score=131.01 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=70.1
Q ss_pred CCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCC-E
Q 031365 61 TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG-V 139 (161)
Q Consensus 61 ~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nG-v 139 (161)
++++|+|.++|||++++||+|++.++ .|+|+|+++...+..+ ..|+.+|+|.|+|.||.+||.++|+|+|+|| +
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 56899999999999999999999985 9999999876543222 2478999999999999999999999999776 9
Q ss_pred EEEEEe
Q 031365 140 LTVTVP 145 (161)
Q Consensus 140 L~I~~p 145 (161)
|+|.-|
T Consensus 81 l~i~~~ 86 (87)
T cd06482 81 VKIETP 86 (87)
T ss_pred EEEeeC
Confidence 999877
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.86 E-value=6.4e-21 Score=127.41 Aligned_cols=79 Identities=24% Similarity=0.447 Sum_probs=68.3
Q ss_pred EECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEE-eC
Q 031365 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM-ES 137 (161)
Q Consensus 59 ~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~-~n 137 (161)
.|++++|.|+++|||++++||+|++.++ .|+|+|++..+.. +..+. .++|+|+|.||.+|+.++|+|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence 4678999999999999999999999985 9999999876432 23333 33899999999999999999998 89
Q ss_pred CEEEEEEe
Q 031365 138 GVLTVTVP 145 (161)
Q Consensus 138 GvL~I~~p 145 (161)
|+|+|+.+
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999976
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.85 E-value=5.3e-21 Score=127.83 Aligned_cols=77 Identities=36% Similarity=0.619 Sum_probs=67.8
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeC-CEE
Q 031365 62 PEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMES-GVL 140 (161)
Q Consensus 62 ~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~n-GvL 140 (161)
+++|.|.++||||+++||+|++++ +.|+|+|+++.... .. ++.++.|.|+|.||.+||+++++|+|.| |+|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL 77 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGVL 77 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcEE
Confidence 369999999999999999999998 59999999876532 12 2346889999999999999999999998 999
Q ss_pred EEEEeC
Q 031365 141 TVTVPK 146 (161)
Q Consensus 141 ~I~~pK 146 (161)
+|++||
T Consensus 78 ~I~~Pk 83 (83)
T cd06526 78 TIEAPK 83 (83)
T ss_pred EEEecC
Confidence 999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.7e-20 Score=141.56 Aligned_cols=115 Identities=60% Similarity=0.952 Sum_probs=102.7
Q ss_pred CCccccCceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecC--CCCcEEEEeeeeeEEEEEEECCC
Q 031365 47 ETSAIVNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKED--KNDTWHRVERSSGMFSRRFRLPE 124 (161)
Q Consensus 47 ~~~~~~~p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~g~f~r~~~LP~ 124 (161)
.....+.++.+|.+..+.|.+.+++||+.+++|+|+++++++|+|+|++..+.+. ....++..|+..|.|.|++.||+
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPe 157 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPE 157 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCc
Confidence 4455566788899999999999999999999999999986689999999876654 55788999999999999999999
Q ss_pred CCccCCeEEEEeCCEEEEEEeCcCC--CCCCeeEEeccC
Q 031365 125 NVKMDQIKASMESGVLTVTVPKVEV--TKPDVKAIAISG 161 (161)
Q Consensus 125 ~vd~~~i~A~~~nGvL~I~~pK~~~--~~~~~~~I~I~~ 161 (161)
+++.+.|+|.|+||||+|++||... +....+.|.|.|
T Consensus 158 nv~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~~ 196 (196)
T KOG0710|consen 158 NVDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAISG 196 (196)
T ss_pred cccHHHHHHHhhCCeEEEEEecccccccCCccceeeccC
Confidence 9999999999999999999999988 577788888875
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.75 E-value=1.3e-17 Score=113.14 Aligned_cols=81 Identities=21% Similarity=0.404 Sum_probs=69.8
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEe-
Q 031365 58 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME- 136 (161)
Q Consensus 58 v~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 136 (161)
+..++++|.|.+++.||+++||+|++.+ +.|+|+|+++....+ ..+. .++|.|+|.||++||++.|+|.|.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e--~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~ 81 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKE--GGIV-----SKNFTKKIQLPPEVDPVTVFASLSP 81 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCC--CCEE-----EEEEEEEEECCCCCCchhEEEEeCC
Confidence 4567889999999999999999999998 599999998865422 2333 467999999999999999999996
Q ss_pred CCEEEEEEeC
Q 031365 137 SGVLTVTVPK 146 (161)
Q Consensus 137 nGvL~I~~pK 146 (161)
||+|+|.+|.
T Consensus 82 dGvL~IeaP~ 91 (91)
T cd06480 82 EGLLIIEAPQ 91 (91)
T ss_pred CCeEEEEcCC
Confidence 9999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2e-16 Score=119.09 Aligned_cols=100 Identities=22% Similarity=0.453 Sum_probs=85.6
Q ss_pred CceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeE
Q 031365 53 NARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIK 132 (161)
Q Consensus 53 ~p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
....++..++++|.|.+|+..|++++|+|++.+ +.|.|.|++.+.. ++..+.. ++|.|+|.||.+||++.|+
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~--d~~G~v~-----R~F~R~y~LP~~vdp~~V~ 133 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKE--DEHGYVS-----RSFVRKYLLPEDVDPTSVT 133 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecccc--CCCCeEE-----EEEEEEecCCCCCChhheE
Confidence 356789999999999999999999999999998 4999999987653 3344453 3599999999999999999
Q ss_pred EEE-eCCEEEEEEeCcCCCCCCeeEEecc
Q 031365 133 ASM-ESGVLTVTVPKVEVTKPDVKAIAIS 160 (161)
Q Consensus 133 A~~-~nGvL~I~~pK~~~~~~~~~~I~I~ 160 (161)
+.+ .+|+|+|.+||........+.|+|+
T Consensus 134 S~LS~dGvLtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 134 STLSSDGVLTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred EeeCCCceEEEEccCCCCcCccceEEeEe
Confidence 999 8999999999998776556777775
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.59 E-value=1.6e-14 Score=93.15 Aligned_cols=80 Identities=55% Similarity=0.892 Sum_probs=70.4
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeC
Q 031365 58 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMES 137 (161)
Q Consensus 58 v~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~n 137 (161)
+.++++.|.|++++||+.+++|.|.+.+ +.|.|+|....... .+...+.|.+.+.||..++++.++|.+.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 4678899999999999999999999998 59999998764322 34456789999999999999999999999
Q ss_pred CEEEEEEeC
Q 031365 138 GVLTVTVPK 146 (161)
Q Consensus 138 GvL~I~~pK 146 (161)
|+|+|++||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.37 E-value=5.3e-12 Score=82.75 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=63.9
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeC
Q 031365 58 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMES 137 (161)
Q Consensus 58 v~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~n 137 (161)
+.++++.+.|.+++||+++++++|.+++. .|.|++. .|.+.+.||..||+++++|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~~--------------------~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNFP--------------------PYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcCC--------------------CEEEEEeCcccccccccEEEEeC
Confidence 35788999999999999999999999984 8888761 27888999999999999999999
Q ss_pred CEEEEEEeCcCC
Q 031365 138 GVLTVTVPKVEV 149 (161)
Q Consensus 138 GvL~I~~pK~~~ 149 (161)
|.|.|+++|.++
T Consensus 60 ~~l~i~L~K~~~ 71 (78)
T cd06469 60 GVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEEEeCCC
Confidence 999999999865
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.19 E-value=2.6e-10 Score=85.48 Aligned_cols=82 Identities=26% Similarity=0.445 Sum_probs=64.6
Q ss_pred cccCceeeEEECCC-eEEEEEEcCCCCCCC-eEEEEeCC-eeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCC
Q 031365 50 AIVNARVDWKETPE-AHVFKADLPGLRKEE-VKVEVEDD-RVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENV 126 (161)
Q Consensus 50 ~~~~p~~dv~e~~d-~~~i~~~lPG~~~ed-i~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v 126 (161)
....+.+++.+.++ .++|.++|||+++++ |+|.++.+ ..|+|+.. +.+.+++.||..
T Consensus 88 ~~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-------------------~~~~krv~L~~~- 147 (177)
T PF05455_consen 88 DEESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-------------------EKYLKRVALPWP- 147 (177)
T ss_pred CcceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-------------------CceEeeEecCCC-
Confidence 34457899999888 699999999999888 99999853 35555421 125578999976
Q ss_pred ccCCeEEEEeCCEEEEEEeCcCCCC
Q 031365 127 KMDQIKASMESGVLTVTVPKVEVTK 151 (161)
Q Consensus 127 d~~~i~A~~~nGvL~I~~pK~~~~~ 151 (161)
+.+.++|.|+||||+|++-+.+..+
T Consensus 148 ~~e~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 148 DPEITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred ccceeeEEEeCceEEEEEeecCCCC
Confidence 6888999999999999998886654
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.05 E-value=2.3e-09 Score=70.12 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=65.5
Q ss_pred EECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCC
Q 031365 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 138 (161)
Q Consensus 59 ~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nG 138 (161)
.++++.+.|.+.+||..++++.|.+.+ +.|.|++... . .+.|...+.|+..|+++..++++.+|
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~~~~~ 65 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGG-----G----------GKEYLLEGELFGPIDPEESKWTVEDR 65 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCC-----C----------CCceEEeeEccCccchhhcEEEEeCC
Confidence 578899999999999999999999998 5999998643 0 12377889999999999999999999
Q ss_pred EEEEEEeCcCC
Q 031365 139 VLTVTVPKVEV 149 (161)
Q Consensus 139 vL~I~~pK~~~ 149 (161)
.|.|+++|..+
T Consensus 66 ~l~i~L~K~~~ 76 (84)
T cd06463 66 KIEITLKKKEP 76 (84)
T ss_pred EEEEEEEECCC
Confidence 99999999876
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.83 E-value=2.2e-08 Score=66.14 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=66.3
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEe
Q 031365 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 136 (161)
Q Consensus 57 dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (161)
|++++++.+.|.+.+||+.++++.|.+.+ +.|.|++... . .+.|...+.|...|+++..++.+.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP-----G----------GSEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC-----C----------CCeEEEecccccccCchhcEEEEe
Confidence 57889999999999999999999999998 5899986632 0 113667789999999999999999
Q ss_pred CCEEEEEEeCcCC
Q 031365 137 SGVLTVTVPKVEV 149 (161)
Q Consensus 137 nGvL~I~~pK~~~ 149 (161)
+|.|.|+|.|..+
T Consensus 65 ~~~vei~L~K~~~ 77 (84)
T cd06466 65 PTKVEITLKKAEP 77 (84)
T ss_pred CeEEEEEEEcCCC
Confidence 9999999999875
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.59 E-value=1.8e-06 Score=55.79 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=63.0
Q ss_pred ceeeEEECCCeEEEEEEcCCC--CCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCe
Q 031365 54 ARVDWKETPEAHVFKADLPGL--RKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQI 131 (161)
Q Consensus 54 p~~dv~e~~d~~~i~~~lPG~--~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (161)
|++++.++++.+.|.+.+++. +++++.|.+.+. .|.|+...... ..|.-.+.|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSGDG---------------KEYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence 578999999999999999665 599999999984 89998653221 126667889999999999
Q ss_pred EEEEeCCEEEEEEeC
Q 031365 132 KASMESGVLTVTVPK 146 (161)
Q Consensus 132 ~A~~~nGvL~I~~pK 146 (161)
++.+.++.|.|+|.|
T Consensus 65 ~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEETTEEEEEEEB
T ss_pred EEEEECCEEEEEEEC
Confidence 999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.34 E-value=9.6e-06 Score=56.36 Aligned_cols=78 Identities=13% Similarity=0.248 Sum_probs=65.7
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEE
Q 031365 54 ARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKA 133 (161)
Q Consensus 54 p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (161)
|+++++++.+.+.|.+.+||+ +++.|.+.. +.|.|++.... ++ ..|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~----~~----------~~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG----GG----------KKYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC----CC----------eeEEEEeEhhhhccccccEE
Confidence 578999999999999999998 889999998 49999975321 11 12556678999999999999
Q ss_pred EEeCCEEEEEEeCcC
Q 031365 134 SMESGVLTVTVPKVE 148 (161)
Q Consensus 134 ~~~nGvL~I~~pK~~ 148 (161)
++.++.|.|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.18 E-value=1.1e-05 Score=66.09 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=56.2
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEE--eCC
Q 031365 62 PEAHVFKADLPGL-RKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM--ESG 138 (161)
Q Consensus 62 ~d~~~i~~~lPG~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~--~nG 138 (161)
.+.++|+++|||+ +..+|+|.|.+. .|.|..... .|.-.+.||..||.+..+|.| +.+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSED-RLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCC-EEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 4789999999999 789999999984 888885431 266779999999999999999 568
Q ss_pred EEEEEEe
Q 031365 139 VLTVTVP 145 (161)
Q Consensus 139 vL~I~~p 145 (161)
+|+|++|
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.16 E-value=2.5e-05 Score=51.71 Aligned_cols=77 Identities=22% Similarity=0.321 Sum_probs=63.8
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEe
Q 031365 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 136 (161)
Q Consensus 57 dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (161)
|++++++...|.+.++|+.++++.|.+.+ +.|.+++... .+. .|.-.+.|...|++++.+....
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~-----~~~----------~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLP-----SGN----------DYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECC-----CCC----------cEEEeeecCceecchhcEEEEe
Confidence 57889999999999999999999999998 4899987641 111 2555678999999998888888
Q ss_pred CCEEEEEEeCcCC
Q 031365 137 SGVLTVTVPKVEV 149 (161)
Q Consensus 137 nGvL~I~~pK~~~ 149 (161)
.+-+.|+|.|...
T Consensus 65 ~~kiei~L~K~~~ 77 (84)
T cd06489 65 STKIEIKLKKTEA 77 (84)
T ss_pred CcEEEEEEEcCCC
Confidence 8999999999864
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.95 E-value=0.00017 Score=48.22 Aligned_cols=79 Identities=22% Similarity=0.202 Sum_probs=66.0
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEE
Q 031365 55 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS 134 (161)
Q Consensus 55 ~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 134 (161)
+.|++++++...|.+-+.|+.++++.+.+++ +.|.|+..... +. .|.-.+.|-..|+++..+..
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~-----~~----------~y~~~l~L~~~I~~~~s~~~ 65 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG-----NK----------EFQLDIELWGVIDVEKSSVN 65 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC-----Cc----------eEEEEeeccceEChhHcEEE
Confidence 4799999999999999999999999999987 48888754321 11 26667889999999998888
Q ss_pred EeCCEEEEEEeCcCC
Q 031365 135 MESGVLTVTVPKVEV 149 (161)
Q Consensus 135 ~~nGvL~I~~pK~~~ 149 (161)
...+-+.|++.|.++
T Consensus 66 v~~~kvei~L~K~~~ 80 (87)
T cd06488 66 MLPTKVEIKLRKAEP 80 (87)
T ss_pred ecCcEEEEEEEeCCC
Confidence 899999999999875
No 32
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.92 E-value=0.00012 Score=48.17 Aligned_cols=74 Identities=24% Similarity=0.364 Sum_probs=60.3
Q ss_pred eEEECCCeEEEEEEcC-CCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEE
Q 031365 57 DWKETPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM 135 (161)
Q Consensus 57 dv~e~~d~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 135 (161)
.+.++++.+.|.+.+| ++.++||+|.+.+ +.|.|+... .. ..-.-.|...|+++....++
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~--------~~----------~~l~~~L~~~I~~~~s~w~~ 62 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG--------GE----------PLLDGELYAKVKVDESTWTL 62 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC--------CC----------ceEcCcccCceeEcCCEEEE
Confidence 5788999999999997 7899999999998 489888531 01 11123588999999988899
Q ss_pred eC-CEEEEEEeCcCC
Q 031365 136 ES-GVLTVTVPKVEV 149 (161)
Q Consensus 136 ~n-GvL~I~~pK~~~ 149 (161)
.+ ..|.|+++|.++
T Consensus 63 ~~~~~v~i~L~K~~~ 77 (85)
T cd06467 63 EDGKLLEITLEKRNE 77 (85)
T ss_pred eCCCEEEEEEEECCC
Confidence 99 999999999875
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.92 E-value=0.00022 Score=47.78 Aligned_cols=79 Identities=11% Similarity=0.282 Sum_probs=63.8
Q ss_pred eeeEEECCCeEEEEEEcCCCCC---CCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEE-CCCCCccCC
Q 031365 55 RVDWKETPEAHVFKADLPGLRK---EEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFR-LPENVKMDQ 130 (161)
Q Consensus 55 ~~dv~e~~d~~~i~~~lPG~~~---edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~-LP~~vd~~~ 130 (161)
.+++.++++.+.|.+.+|+... +++.|.+..+ .|.|++... ++. .|.-.+. |-..|+++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~~~-----~~~----------~~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVHDL-----NGK----------NYRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEECC-----CCc----------EEEEEehHhhCccCccc
Confidence 4789999999999999999976 9999999984 899987421 111 1333453 889999999
Q ss_pred eEEEEeCCEEEEEEeCcCC
Q 031365 131 IKASMESGVLTVTVPKVEV 149 (161)
Q Consensus 131 i~A~~~nGvL~I~~pK~~~ 149 (161)
.+.....+-+.|+|.|.++
T Consensus 67 s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 67 SSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred cEEEEeCCEEEEEEEeCCC
Confidence 9999999999999999875
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.84 E-value=0.00026 Score=47.03 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=58.9
Q ss_pred eeEEECCCeEEEEEEcC-CCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEE
Q 031365 56 VDWKETPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS 134 (161)
Q Consensus 56 ~dv~e~~d~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 134 (161)
+++.++.+...|.+.+| |+.++|++|++.. +.|.|.... +.. + -.-.|...|+++...-.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~-------~~~----------~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKD-------QAP----------L-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCC-------CCe----------E-EeCcccCcccccCcEEE
Confidence 36789999999999996 9999999999998 488886420 000 1 12368899999988888
Q ss_pred EeCC-EEEEEEeCcCC
Q 031365 135 MESG-VLTVTVPKVEV 149 (161)
Q Consensus 135 ~~nG-vL~I~~pK~~~ 149 (161)
+.+| .|.|+|.|.++
T Consensus 62 i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 62 IKENKSLEVSLIKKDE 77 (85)
T ss_pred EeCCCEEEEEEEECCC
Confidence 8777 79999999875
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.66 E-value=0.00093 Score=45.41 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=62.0
Q ss_pred CceeeEEECCCeEEEEEEcC-CCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCe
Q 031365 53 NARVDWKETPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQI 131 (161)
Q Consensus 53 ~p~~dv~e~~d~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (161)
.+.+.+.++.+.+.|.+.+| |++++|+.|.+... .|.|...- .. . -.| .|...|+++..
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~g--------~~-~----l~G------~L~~~I~~des 64 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVKG--------QE-V----LKG------KLFDSVVADEC 64 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEECC--------EE-E----EcC------cccCccCcccC
Confidence 46789999999999999998 99999999999984 88887421 00 0 012 58889999988
Q ss_pred EEEEeCCE-EEEEEeCcCCC
Q 031365 132 KASMESGV-LTVTVPKVEVT 150 (161)
Q Consensus 132 ~A~~~nGv-L~I~~pK~~~~ 150 (161)
.-++++|- |.|+|.|.+..
T Consensus 65 tWtled~k~l~I~L~K~~~~ 84 (93)
T cd06494 65 TWTLEDRKLIRIVLTKSNRD 84 (93)
T ss_pred EEEEECCcEEEEEEEeCCCC
Confidence 88898775 89999998643
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.56 E-value=0.002 Score=44.78 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=61.6
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEE
Q 031365 54 ARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKA 133 (161)
Q Consensus 54 p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (161)
|.+++.++.+.+.|++.+|+ .+|++|.+++. .|+++|... ++.. |.-.+.|=..|++++.+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~-~l~f~~~~~-----~g~~----------y~~~l~l~~~I~pe~Sk~ 63 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKS-KLTFSCLNG-----DNVK----------IYNEIELYDRVDPNDSKH 63 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecC-EEEEEEECC-----CCcE----------EEEEEEeecccCcccCeE
Confidence 77999999999999999999 57999999984 999998421 1111 334577888899997777
Q ss_pred EEeCCEEEEEEeCcCC
Q 031365 134 SMESGVLTVTVPKVEV 149 (161)
Q Consensus 134 ~~~nGvL~I~~pK~~~ 149 (161)
....--+.|.+.|.+.
T Consensus 64 ~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 64 KRTDRSILCCLRKGKE 79 (106)
T ss_pred EeCCceEEEEEEeCCC
Confidence 7777788889999864
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.00 E-value=0.0055 Score=51.08 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=66.7
Q ss_pred CceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeE
Q 031365 53 NARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIK 132 (161)
Q Consensus 53 ~p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
.++.|++++++.+.|.|-+.|+.++++.|.+.+ +.|.|+..... +. .|...+.|-..|+++..+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~-----~~----------~y~~~~~L~~~I~p~~s~ 219 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG-----ED----------AYHLQPRLFGKIIPDKCK 219 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC-----Cc----------ceeecccccccccccccE
Confidence 377899999999999999999999999999998 48888864321 11 245557888999999988
Q ss_pred EEEeCCEEEEEEeCcCC
Q 031365 133 ASMESGVLTVTVPKVEV 149 (161)
Q Consensus 133 A~~~nGvL~I~~pK~~~ 149 (161)
.+..---+.|+|.|...
T Consensus 220 ~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 220 YEVLSTKIEIRLAKAEP 236 (356)
T ss_pred EEEecceEEEEEecCCC
Confidence 88888899999998764
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.94 E-value=0.0043 Score=46.91 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=61.9
Q ss_pred CceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeE
Q 031365 53 NARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIK 132 (161)
Q Consensus 53 ~p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
.++.|++++....+|.+-.+++.++|+.|++.+ +.|.+...-+.. . .|.-...|-..|.++..+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g-----~----------~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSG-----S----------EYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCc-----h----------hhhhhHHhccccccccee
Confidence 367899999999999999999999999999997 588877554321 1 133344577788888777
Q ss_pred EEEeCCEEEEEEeCcC
Q 031365 133 ASMESGVLTVTVPKVE 148 (161)
Q Consensus 133 A~~~nGvL~I~~pK~~ 148 (161)
-+.----+.|+|+|..
T Consensus 67 ~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 67 FKVFSTKVEITLAKAE 82 (196)
T ss_pred eEeeeeeEEEEecccc
Confidence 7777778889998853
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.37 E-value=0.11 Score=34.59 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=55.0
Q ss_pred eeEEECCCeEEEEEEcCCC--CCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEE
Q 031365 56 VDWKETPEAHVFKADLPGL--RKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKA 133 (161)
Q Consensus 56 ~dv~e~~d~~~i~~~lPG~--~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (161)
.|++++++..+|.+-..+. .+.++.+.... +.|.|+-... +. .|...+.|=..|+++. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~----~~------------~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG----DK------------SYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC----Cc------------eEEEeeeccccCCCCc-EE
Confidence 4889999999999998864 44555555555 4788875432 10 1566678888898775 55
Q ss_pred EEe--CCEEEEEEeCcCCC
Q 031365 134 SME--SGVLTVTVPKVEVT 150 (161)
Q Consensus 134 ~~~--nGvL~I~~pK~~~~ 150 (161)
++. -|-+.|++.|.++.
T Consensus 63 ~~~~~~~KVEI~L~K~e~~ 81 (87)
T cd06490 63 RISTETGKIELVLKKKEPE 81 (87)
T ss_pred EEcccCceEEEEEEcCCCC
Confidence 554 78999999998753
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.33 E-value=0.054 Score=36.17 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=55.6
Q ss_pred eEEECCCeEEEEEEcC-C--CCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEE
Q 031365 57 DWKETPEAHVFKADLP-G--LRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKA 133 (161)
Q Consensus 57 dv~e~~d~~~i~~~lP-G--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (161)
.+.++.+...|++.+| | ++..||+|.+... .|.|.-+.. ... + .=.|...|+++...-
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~g~--------~~~--------i--~G~L~~~V~~des~W 62 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLKGQ--------PPI--------I--DGELYNEVKVEESSW 62 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEECCC--------ceE--------E--eCcccCcccccccEE
Confidence 3567788899999996 3 7899999999984 888864211 111 1 125788899998888
Q ss_pred EEeCC-EEEEEEeCcCC
Q 031365 134 SMESG-VLTVTVPKVEV 149 (161)
Q Consensus 134 ~~~nG-vL~I~~pK~~~ 149 (161)
.+++| .|.|+|-|...
T Consensus 63 tled~~~l~i~L~K~~~ 79 (87)
T cd06492 63 LIEDGKVVTVNLEKINK 79 (87)
T ss_pred EEeCCCEEEEEEEECCC
Confidence 89886 89999999864
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.27 E-value=0.092 Score=36.22 Aligned_cols=80 Identities=13% Similarity=0.313 Sum_probs=59.9
Q ss_pred CceeeEEECCCeEEEEEEcC-CC-CCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCC
Q 031365 53 NARVDWKETPEAHVFKADLP-GL-RKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQ 130 (161)
Q Consensus 53 ~p~~dv~e~~d~~~i~~~lP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (161)
...+.+.++.+...|++.|| |. +.+||.|.+.. +.|.|.-... .+..... .| .|...|+++.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~-----~~~~~~i----~G------~L~~~V~~de 67 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDG-----GGEKVLM----EG------EFTHKINTEN 67 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecC-----CCCceEE----eC------cccCcccCcc
Confidence 35688999999999999999 64 57899999998 4888875310 0000110 11 4888999998
Q ss_pred eEEEEeCC-EEEEEEeCcC
Q 031365 131 IKASMESG-VLTVTVPKVE 148 (161)
Q Consensus 131 i~A~~~nG-vL~I~~pK~~ 148 (161)
..-.+++| .|.|+|-|..
T Consensus 68 s~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 68 SLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred ceEEEeCCCEEEEEEEECC
Confidence 88899886 5899999975
No 42
>PF14913 DPCD: DPCD protein family
Probab=93.25 E-value=0.97 Score=34.58 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=60.4
Q ss_pred ccccCceeeEEECCCeEEEEE-EcCCCCCCCeEEEEeCC-eeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCC-
Q 031365 49 SAIVNARVDWKETPEAHVFKA-DLPGLRKEEVKVEVEDD-RVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPEN- 125 (161)
Q Consensus 49 ~~~~~p~~dv~e~~d~~~i~~-~lPG~~~edi~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~- 125 (161)
.+..+|-+-=..+...|.-++ +||. .++-.+|.++++ +.++|+..-+ .|.+.|.+|+-
T Consensus 82 ESs~nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtNK------------------KYyKk~~IPDl~ 142 (194)
T PF14913_consen 82 ESSSNPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTNK------------------KYYKKFSIPDLD 142 (194)
T ss_pred ecCCCCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcCc------------------cceeEecCCcHH
Confidence 345566666678888999999 6775 788888888854 5788884421 16667888842
Q ss_pred -----CccCCeEEEEeCCEEEEEEeCcC
Q 031365 126 -----VKMDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 126 -----vd~~~i~A~~~nGvL~I~~pK~~ 148 (161)
.+.+.++..+.|..|.|+..|..
T Consensus 143 R~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 143 RCGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred hhCCCcchhhceeeeecCeEEEEecCcH
Confidence 46677888899999999998863
No 43
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=89.62 E-value=3.9 Score=30.96 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=59.9
Q ss_pred ccccCceeeEEECCCeEEEEEEcC-CC-CCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCC
Q 031365 49 SAIVNARVDWKETPEAHVFKADLP-GL-RKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENV 126 (161)
Q Consensus 49 ~~~~~p~~dv~e~~d~~~i~~~lP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v 126 (161)
.+...+.+.+..+=..+.|.+.+| |+ +..+|.|.+.. +.|.|.-..... +. - =.|...|
T Consensus 14 ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~~-------il-----d------G~L~~~v 74 (179)
T KOG2265|consen 14 NGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQPP-------IL-----D------GELSHSV 74 (179)
T ss_pred CCccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCCc-------ee-----c------Ccccccc
Confidence 334457788999989999999887 88 78899999997 577776432210 11 1 1377889
Q ss_pred ccCCeEEEEeCCEEEEEEeCcCC
Q 031365 127 KMDQIKASMESGVLTVTVPKVEV 149 (161)
Q Consensus 127 d~~~i~A~~~nGvL~I~~pK~~~ 149 (161)
+++...-++++|.+.|.+-++..
T Consensus 75 k~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 75 KVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred ccccceEEecCCEEEEEEeeccc
Confidence 99999999999988777766543
No 44
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=88.91 E-value=2 Score=32.41 Aligned_cols=81 Identities=10% Similarity=0.196 Sum_probs=57.9
Q ss_pred ccCceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCC
Q 031365 51 IVNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQ 130 (161)
Q Consensus 51 ~~~p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (161)
...|.+-+.+..+.+++++.++-. .+..|.++. +.|+++|+-... .+ .+...|.|=..||+++
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~-~~l~fs~k~~~d------~~--------~~~~~ief~~eIdpe~ 67 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEP-SKLTFSCKSGAD------NH--------KYENEIEFFDEIDPEK 67 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccC--ccceeeccc-cEEEEEeccCCC------ce--------eeEEeeehhhhcCHhh
Confidence 345788899999999999999864 566666776 489999885421 11 2556788888999997
Q ss_pred eEEEEeCCEEEEEEeCcCC
Q 031365 131 IKASMESGVLTVTVPKVEV 149 (161)
Q Consensus 131 i~A~~~nGvL~I~~pK~~~ 149 (161)
.+-+-. +-+...++++..
T Consensus 68 sk~k~~-~r~if~i~~K~e 85 (180)
T KOG3158|consen 68 SKHKRT-SRSIFCILRKKE 85 (180)
T ss_pred cccccc-ceEEEEEEEccc
Confidence 777666 666666665543
No 45
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=84.02 E-value=2.4 Score=28.23 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=29.3
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCC
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVEV 149 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~~ 149 (161)
.|.-+..|| +++++.|+.++.+|.|+|+.-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 366778899 7999999999999999999987643
No 46
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=82.89 E-value=15 Score=26.40 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=50.1
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEE
Q 031365 54 ARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKA 133 (161)
Q Consensus 54 p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (161)
..+.|...++ ..+++.. ..+.++++.+++ .|.|+.+...... ...+..... ...-.-.+.||..+..++++.
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~-~L~I~~~~~~~~~--~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i 137 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEGG-TLTIKSKDRESFF--FKGFNFNNS-DNKSKITIYLPKDYKLDKIDI 137 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcCC-EEEEEEecccccc--cceEEEccc-CCCcEEEEEECCCCceeEEEE
Confidence 4466666443 4445555 222688888875 9999876221100 011211111 234556789999998889999
Q ss_pred EEeCCEEEEE
Q 031365 134 SMESGVLTVT 143 (161)
Q Consensus 134 ~~~nGvL~I~ 143 (161)
.-.+|-+.|.
T Consensus 138 ~~~~G~i~i~ 147 (166)
T PF13349_consen 138 KTSSGDITIE 147 (166)
T ss_pred EeccccEEEE
Confidence 9999988875
No 47
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=82.09 E-value=9.3 Score=30.79 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=69.4
Q ss_pred ccCceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCC
Q 031365 51 IVNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQ 130 (161)
Q Consensus 51 ~~~p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (161)
...-+.|+..++..++|.|-.-|.-++.-.|..+. ..|.|.-..... -..|...+.|=.-|+++.
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~g--------------na~fd~d~kLwgvvnve~ 276 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGFG--------------NASFDLDYKLWGVVNVEE 276 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecCC--------------Cceeeccceeeeeechhh
Confidence 45567899999999999999999999988888875 588887665321 113777788877899999
Q ss_pred eEEEEeCCEEEEEEeCcCCCC
Q 031365 131 IKASMESGVLTVTVPKVEVTK 151 (161)
Q Consensus 131 i~A~~~nGvL~I~~pK~~~~~ 151 (161)
.++.+-.--+.|+|+|.++..
T Consensus 277 s~v~m~~tkVEIsl~k~ep~s 297 (320)
T KOG1667|consen 277 SSVVMGETKVEISLKKAEPGS 297 (320)
T ss_pred ceEEeecceEEEEEeccCCCC
Confidence 999999999999999987643
No 48
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=79.75 E-value=6.7 Score=25.89 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=30.0
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCCC
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVEVT 150 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~~~ 150 (161)
+|.-.+.|| +++.+.|+..++++.|+|+..+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 477789999 69999999999999999998776544
No 49
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=77.24 E-value=7.5 Score=25.51 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~ 148 (161)
.|.-.+.|| +++++.|+.++.+|.|+|+.-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477788998 699999999999999999987643
No 50
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=76.90 E-value=6.9 Score=25.54 Aligned_cols=32 Identities=6% Similarity=0.147 Sum_probs=28.2
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKV 147 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~ 147 (161)
.|.-.+.|| +++++.|+.++.+|.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477789998 79999999999999999998654
No 51
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=76.41 E-value=6.1 Score=26.01 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=28.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~ 148 (161)
.|.-.+.|| +++++.|+..+++|.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 377778998 699999999999999999998754
No 52
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=75.30 E-value=8.2 Score=25.42 Aligned_cols=32 Identities=3% Similarity=0.106 Sum_probs=27.9
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKV 147 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~ 147 (161)
.|.-.+.|| +++++.|+.++.+|.|+|+.-+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477788998 69999999999999999998654
No 53
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=74.96 E-value=7.5 Score=25.44 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=28.6
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~ 148 (161)
.|.-.+.|| +++++.|+.+.++|.|+|+.-|..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 377778999 799999999999999999987653
No 54
>PRK10743 heat shock protein IbpA; Provisional
Probab=74.95 E-value=7.7 Score=28.04 Aligned_cols=33 Identities=6% Similarity=0.195 Sum_probs=26.4
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCC
Q 031365 116 FSRRFRLPENVKMDQIKASMESGVLTVTVPKVEV 149 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~~ 149 (161)
|.-...|| +++.+.|+.++++|+|+|+.-+...
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECcc
Confidence 33346688 7999999999999999999976543
No 55
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=73.02 E-value=15 Score=25.00 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=31.0
Q ss_pred cCceeeEEECCCeEEEEEEcCCC-----CCCCeEEEEeCCeeEEEE
Q 031365 52 VNARVDWKETPEAHVFKADLPGL-----RKEEVKVEVEDDRVLQIS 92 (161)
Q Consensus 52 ~~p~~dv~e~~d~~~i~~~lPG~-----~~edi~V~v~~~~~L~I~ 92 (161)
..|.+.|+++++.|.|.+--+.- .++...|+-++| .+.|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 35999999999999999866653 567777887776 66665
No 56
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=73.00 E-value=2.4 Score=34.59 Aligned_cols=83 Identities=23% Similarity=0.157 Sum_probs=61.1
Q ss_pred ccCceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCC
Q 031365 51 IVNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQ 130 (161)
Q Consensus 51 ~~~p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (161)
.....+++.++.+...|-+--|-+..++|.+.++. |.|.|+-+.+... --+.-.+.|-..|+++.
T Consensus 174 ~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~~--------------~~~~~~~~Ly~ev~P~~ 238 (368)
T COG5091 174 KMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRLR--------------LWNDITISLYKEVYPDI 238 (368)
T ss_pred cceeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccccc--------------hHHHhhhhhhhhcCcch
Confidence 34456777889998888888899999999999997 6999986643211 01334567778888887
Q ss_pred eEEEEeCCEEEEEEeCcC
Q 031365 131 IKASMESGVLTVTVPKVE 148 (161)
Q Consensus 131 i~A~~~nGvL~I~~pK~~ 148 (161)
.+-+.---++.|++-|..
T Consensus 239 ~s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 239 RSIKSFSKRVEVHLRKVE 256 (368)
T ss_pred hhhhhcchhheehhhhhh
Confidence 776665577888887754
No 57
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=72.00 E-value=7.1 Score=25.70 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=25.5
Q ss_pred CeEEEEEEcCCCCCCCeEEEEeCCeeEEEEE
Q 031365 63 EAHVFKADLPGLRKEEVKVEVEDDRVLQISG 93 (161)
Q Consensus 63 d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g 93 (161)
..|.-.+.||.+..+.++-++.+| .|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 456677889999999999999998 999974
No 58
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=71.88 E-value=12 Score=24.83 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=27.4
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEeCCeeEEEEEEEeeee
Q 031365 63 EAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRKIEK 99 (161)
Q Consensus 63 d~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~ 99 (161)
..|.-.+.|| +++.+.|+..+.+| .|+|+..+....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~~~ 91 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKEEE 91 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSSSC
T ss_pred ceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEccccc
Confidence 4677789998 88899999999987 999998876554
No 59
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=71.44 E-value=18 Score=22.41 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=30.7
Q ss_pred eeEE-ECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEE
Q 031365 56 VDWK-ETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQR 95 (161)
Q Consensus 56 ~dv~-e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~ 95 (161)
+.+. -..+.|.|++..+|+..-.-.|.+..|....|...-
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 4555 456799999999999988888888866667776553
No 60
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=71.24 E-value=10 Score=24.05 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=28.4
Q ss_pred ECCCeEEEEEEcC-CCCCCCeEEEEeCCeeEEEEEE
Q 031365 60 ETPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQ 94 (161)
Q Consensus 60 e~~d~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~ 94 (161)
.....|.-.+.|| +++.+.++..+.+| .|+|+..
T Consensus 53 ~~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~p 87 (88)
T cd06464 53 RSYGSFSRSFRLPEDVDPDKIKASLENG-VLTITLP 87 (88)
T ss_pred EeCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEEc
Confidence 3457899999999 77889999999997 9999853
No 61
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=70.71 E-value=4.3 Score=25.19 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=12.2
Q ss_pred CCeEEEEeCCEEEEEEeC
Q 031365 129 DQIKASMESGVLTVTVPK 146 (161)
Q Consensus 129 ~~i~A~~~nGvL~I~~pK 146 (161)
..|+|.|+||+|+-.=|-
T Consensus 3 ~~I~aiYe~GvlkPl~~~ 20 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPV 20 (60)
T ss_dssp --EEEEEETTEEEECS--
T ss_pred ceEEEEEECCEEEECCCC
Confidence 458999999999865333
No 62
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=69.29 E-value=13 Score=24.56 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~ 148 (161)
.|.-.+.|| ++.++.|+.+++++.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 377778898 699999999999999999997653
No 63
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=68.29 E-value=11 Score=24.34 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=29.9
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCC
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVEV 149 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~~ 149 (161)
.|.-.+.|| ++.++.|+..++++.|+|+..+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 478889999 5999999999999999999987654
No 64
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=67.60 E-value=10 Score=25.00 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=27.0
Q ss_pred CCeEEEEEEcC-CCCCCCeEEEEeCCeeEEEEE
Q 031365 62 PEAHVFKADLP-GLRKEEVKVEVEDDRVLQISG 93 (161)
Q Consensus 62 ~d~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g 93 (161)
...|.-.+.|| +++.+.|+-.+.+| .|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 45888899999 78899999999998 999974
No 65
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=67.03 E-value=16 Score=23.99 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=28.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~ 148 (161)
.|.-.+.|| +++++.|+..+.++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 477789998 699999999999999999997653
No 66
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=66.93 E-value=20 Score=23.43 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=27.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKV 147 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~ 147 (161)
.|.-.+.|| +++++.|+..+.++.|+|..-+.
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477788998 69999999999999999999653
No 67
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=66.18 E-value=15 Score=26.77 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=26.3
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 031365 116 FSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~ 148 (161)
|.-...|| +++.+.|+..+++|.|+|+.-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 44446788 799999999999999999997653
No 68
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=64.57 E-value=16 Score=24.51 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=25.2
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEe-CCeeEEEEE
Q 031365 63 EAHVFKADLP-GLRKEEVKVEVE-DDRVLQISG 93 (161)
Q Consensus 63 d~~~i~~~lP-G~~~edi~V~v~-~~~~L~I~g 93 (161)
..|.=.+.|| +++.++|+-.+. +| .|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEG-LLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCC-eEEEEc
Confidence 4667778898 999999999999 66 999985
No 69
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=63.52 E-value=24 Score=22.03 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=27.5
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEeCCeeEEEEEEEe
Q 031365 63 EAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRK 96 (161)
Q Consensus 63 d~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~ 96 (161)
+.|.+.++|| .+.+++.+..+.+| .|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 5688999998 55899999999986 899996664
No 70
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=59.53 E-value=29 Score=24.94 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=24.7
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEeCCeeEEEEEEEeee
Q 031365 63 EAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRKIE 98 (161)
Q Consensus 63 d~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~ 98 (161)
..|.-.+.|| +++.+.++-++.+| .|+|+-.+...
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~~ 135 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAEP 135 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCc-EEEEEEecccc
Confidence 3555666777 55667788888887 88888776543
No 71
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=59.07 E-value=21 Score=21.51 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=19.7
Q ss_pred CCCCCCCeEEEEeCCeeEEEEEEEee
Q 031365 72 PGLRKEEVKVEVEDDRVLQISGQRKI 97 (161)
Q Consensus 72 PG~~~edi~V~v~~~~~L~I~g~~~~ 97 (161)
++++..+|.|.+.+| .++|+|.-..
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESS
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcH
Confidence 366777999999987 9999999754
No 72
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=58.58 E-value=48 Score=25.47 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=54.6
Q ss_pred eeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEE-ECCCCCccCCeEEE
Q 031365 56 VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRF-RLPENVKMDQIKAS 134 (161)
Q Consensus 56 ~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~-~LP~~vd~~~i~A~ 134 (161)
+-|-+.++.+.+.+.|-||..++++|.+.. +.|-+.-..- .+. +|.-.+ .|-..|++++.+-.
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dl-----qGK----------~y~~~vnnLlk~I~vEks~~k 140 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDL-----QGK----------NYRMIVNNLLKPISVEKSSKK 140 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeec-----CCc----------ceeeehhhhccccChhhcccc
Confidence 445567778889999999999999999997 5877764321 111 233233 25567888888888
Q ss_pred EeCCEEEEEEeCcCC
Q 031365 135 MESGVLTVTVPKVEV 149 (161)
Q Consensus 135 ~~nGvL~I~~pK~~~ 149 (161)
.+-....|.+.|.+.
T Consensus 141 vKtd~v~I~~kkVe~ 155 (224)
T KOG3260|consen 141 VKTDTVLILCKKVEN 155 (224)
T ss_pred cccceEEEeehhhhc
Confidence 887777788866543
No 73
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=53.96 E-value=74 Score=24.10 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=30.9
Q ss_pred CCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 031365 76 KEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 145 (161)
Q Consensus 76 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 145 (161)
+++++|++++ +.++|+|.+. ...+. ||.. .++...++|.|.|...
T Consensus 13 P~~V~v~i~~-~~v~VkGp~G------------------~L~~~--~~~~----~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPKG------------------ELTRD--FWYP----GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEEC-CEEEEECCCe------------------EEEEE--ecCC----cEEEEEECCEEEEEEC
Confidence 5788999997 5999998753 34433 3321 4566778888888755
No 74
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=53.52 E-value=32 Score=21.83 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=26.0
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 031365 116 FSRRFRLPENVKMDQIKASMESGVLTVTVP 145 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 145 (161)
..-+|.+|..++.+.++..+.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 455678999999999999999999999986
No 75
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=51.32 E-value=82 Score=23.62 Aligned_cols=44 Identities=27% Similarity=0.504 Sum_probs=30.4
Q ss_pred CCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 031365 76 KEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 145 (161)
Q Consensus 76 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 145 (161)
+++|+|++++ +.|+|+|.+. ...+.+ |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~G------------------~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPKG------------------ELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCCe------------------EEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 5788999987 5999998753 344444 53 4456678888887755
No 76
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=50.33 E-value=29 Score=26.13 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=24.8
Q ss_pred EEcC-CCCCCCeEEEEeCCeeEEEEEEEeee
Q 031365 69 ADLP-GLRKEEVKVEVEDDRVLQISGQRKIE 98 (161)
Q Consensus 69 ~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~ 98 (161)
..|| |++++.|.-.+..+..|+|+|.+...
T Consensus 121 y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 121 YLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred ecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 4577 99999999999855599999987654
No 77
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=50.07 E-value=1e+02 Score=23.07 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=30.6
Q ss_pred CCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 031365 76 KEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 145 (161)
Q Consensus 76 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 145 (161)
+++++|++++ +.++|+|.+. ...+.+. |. .++...+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~G------------------~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPKG------------------EVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCCe------------------EEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 5788999997 5999998753 3443332 32 4566678888888854
No 78
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=47.74 E-value=90 Score=23.45 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=30.1
Q ss_pred CCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 031365 76 KEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 145 (161)
Q Consensus 76 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 145 (161)
+++|+|++++ +.|+|+|.+. ...+.| |. .+....+++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~G------------------~l~~~~--~~-----~v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPKG------------------ELSRTL--NP-----DVTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCE------------------EEEEEc--CC-----CeEEEEECCEEEEEcC
Confidence 5789999997 5999998743 344444 43 3455668887777754
No 79
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=46.99 E-value=42 Score=22.45 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=26.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEE
Q 031365 115 MFSRRFRLPENVKMDQIKASMESGVLTVTV 144 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~ 144 (161)
...-+|+||.++..+.+...+...-|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 455678999999999999999999999998
No 80
>PRK14290 chaperone protein DnaJ; Provisional
Probab=46.12 E-value=1.3e+02 Score=25.16 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=19.8
Q ss_pred EEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 031365 119 RFRLPENVKMDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 119 ~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~ 148 (161)
.|.|.+.+--..+....-+|.++|.+|...
T Consensus 277 ~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~ 306 (365)
T PRK14290 277 KINFPQAALGGEIEIKLFREKYNLKIPEGT 306 (365)
T ss_pred EeCHHHHhCCCEEEEEcCCceEEEEECCcc
Confidence 444445555555666667888999999653
No 81
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=45.49 E-value=11 Score=27.83 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=19.1
Q ss_pred CCCCCccCCeEEEEeCCEEEEEEeC
Q 031365 122 LPENVKMDQIKASMESGVLTVTVPK 146 (161)
Q Consensus 122 LP~~vd~~~i~A~~~nGvL~I~~pK 146 (161)
|-+.+..+.-.+.|.||||+|.++-
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred HHhhcCccccccccccceEEEEecC
Confidence 3345555667788999999999983
No 82
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=44.08 E-value=94 Score=23.37 Aligned_cols=44 Identities=20% Similarity=0.516 Sum_probs=29.9
Q ss_pred CCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 031365 76 KEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 145 (161)
Q Consensus 76 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 145 (161)
+++|+|++++ +.|+|+|.+. ... ..||. .+....+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G------------------~l~--~~~~~-----~v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKG------------------TLS--RKIPD-----LITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCE------------------EEE--EECCC-----CeEEEEeCCEEEEEcC
Confidence 4688899987 5999998753 233 45565 3455678887777754
No 83
>PRK10568 periplasmic protein; Provisional
Probab=43.95 E-value=41 Score=25.76 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCCCCCCeEEEEeCCeeEEEEEEEee
Q 031365 72 PGLRKEEVKVEVEDDRVLQISGQRKI 97 (161)
Q Consensus 72 PG~~~edi~V~v~~~~~L~I~g~~~~ 97 (161)
++++..+|+|.+.+| .+++.|.-..
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeCC
Confidence 667778999999997 9999999763
No 84
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=42.99 E-value=1.2e+02 Score=23.13 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=29.2
Q ss_pred CCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeec
Q 031365 61 TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKE 100 (161)
Q Consensus 61 ~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~ 100 (161)
.++.|+=++.||--..+-.++++++| +|.|+-++..+..
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCCC
Confidence 34446667888855677889999997 9999988876543
No 85
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=42.45 E-value=29 Score=23.90 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.4
Q ss_pred CCeEEEEeCCEEEEEEeC
Q 031365 129 DQIKASMESGVLTVTVPK 146 (161)
Q Consensus 129 ~~i~A~~~nGvL~I~~pK 146 (161)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 567888999999999983
No 86
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=40.15 E-value=29 Score=23.92 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=14.8
Q ss_pred eEEEEeCCEEEEEEeCc
Q 031365 131 IKASMESGVLTVTVPKV 147 (161)
Q Consensus 131 i~A~~~nGvL~I~~pK~ 147 (161)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 78889999999999854
No 87
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=39.71 E-value=1.6e+02 Score=22.46 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 031365 76 KEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 145 (161)
Q Consensus 76 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 145 (161)
+++++|++++ +.++|+|.+. ...+. ||.. ...+....++|.|.|.-+
T Consensus 13 P~~V~V~i~~-~~v~VkGp~G------------------~L~~~--~~~~--~~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGKYG------------------ELTRS--FRHL--PVDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEEC-CEEEEECCCc------------------eEEEE--ecCC--CceEEEEeCCCEEEEEeC
Confidence 6889999997 5999998743 34443 3321 135666778888777754
No 88
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=39.53 E-value=29 Score=23.81 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.7
Q ss_pred CeEEEEeCCEEEEEEeC
Q 031365 130 QIKASMESGVLTVTVPK 146 (161)
Q Consensus 130 ~i~A~~~nGvL~I~~pK 146 (161)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 47888999999999984
No 89
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=38.96 E-value=45 Score=23.00 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.6
Q ss_pred CCeEEEEeCCEEEEEEeC
Q 031365 129 DQIKASMESGVLTVTVPK 146 (161)
Q Consensus 129 ~~i~A~~~nGvL~I~~pK 146 (161)
..+.+.+.+|||+|.++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 368899999999999964
No 90
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=37.27 E-value=81 Score=20.26 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=24.5
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 031365 116 FSRRFRLPENVKMDQIKASMESGVLTVTVP 145 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 145 (161)
..-+|.+|.++..+.++..++..-|.|.+.
T Consensus 10 V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06493 10 LTLTIRLPEDTTKEDIRIKFLPDHISIALK 39 (85)
T ss_pred EEEEEECCCCCChhhEEEEEecCEEEEEeC
Confidence 445688998999999999998888888773
No 91
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=36.63 E-value=96 Score=20.18 Aligned_cols=42 Identities=12% Similarity=0.402 Sum_probs=25.7
Q ss_pred CCcEEEEeeeeeEEEEEEECCCCCccCC-eEEEEeCCEE-EEEE
Q 031365 103 NDTWHRVERSSGMFSRRFRLPENVKMDQ-IKASMESGVL-TVTV 144 (161)
Q Consensus 103 ~~~~~~~e~~~g~f~r~~~LP~~vd~~~-i~A~~~nGvL-~I~~ 144 (161)
.+.|....-.+--+.|.|.+|+...+.. +.-.|.+|-+ .|.-
T Consensus 30 pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 30 PGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp TTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 3455555555556889999999977665 8888887744 4553
No 92
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=35.68 E-value=2e+02 Score=21.98 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=28.1
Q ss_pred CCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEE--------EeeeeeEEEEEEECCCC
Q 031365 73 GLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHR--------VERSSGMFSRRFRLPEN 125 (161)
Q Consensus 73 G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~--------~e~~~g~f~r~~~LP~~ 125 (161)
...++++.| ++| .|.|++.+..........+.. ....+|.|+-++++|..
T Consensus 34 ~~~~~nv~v--~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 34 TYRPENAYV--EDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred eCCCCCeEE--ECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 345566554 466 899998765421111112221 12356888888888854
No 93
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=34.98 E-value=1.8e+02 Score=22.90 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=25.4
Q ss_pred EEEeCCeeEEEEEEEeeeec-CCCCcEEE------EeeeeeEEEEEEECCCC
Q 031365 81 VEVEDDRVLQISGQRKIEKE-DKNDTWHR------VERSSGMFSRRFRLPEN 125 (161)
Q Consensus 81 V~v~~~~~L~I~g~~~~~~~-~~~~~~~~------~e~~~g~f~r~~~LP~~ 125 (161)
|.+.+| .|+|++.+..... .....+.. ....+|.|+-+++||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 455676 7888887654210 01112221 12357899999999853
No 94
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=34.10 E-value=78 Score=21.06 Aligned_cols=37 Identities=8% Similarity=0.194 Sum_probs=26.0
Q ss_pred EEECCCeEEEEEEc-CCCCCCCeEEEEeC--CeeEEEEEEEe
Q 031365 58 WKETPEAHVFKADL-PGLRKEEVKVEVED--DRVLQISGQRK 96 (161)
Q Consensus 58 v~e~~d~~~i~~~l-PG~~~edi~V~v~~--~~~L~I~g~~~ 96 (161)
|.++++.++|.+.+ ||.+++.|.= +++ + .|.|+-.-.
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i~g-~~~~~~-~Lki~v~Ap 40 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSIVG-YNEWRK-RVEVKIKAP 40 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCcceecc-ccCCCC-eEEEEEecC
Confidence 35678888888887 8988887743 455 4 677775543
No 95
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.94 E-value=1.1e+02 Score=20.74 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=27.0
Q ss_pred eeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEE
Q 031365 56 VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQ 94 (161)
Q Consensus 56 ~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~ 94 (161)
.+|.+.+| .|....||.++ |.|+.+++ .|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis~--ieik~E~k-kL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGISR--IEIKPENK-KLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCceE--EEEecccc-eEEEecc
Confidence 68889998 77788999864 77777774 8888873
No 96
>PF13014 KH_3: KH domain
Probab=32.36 E-value=63 Score=17.88 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=12.5
Q ss_pred EEEEeCcCCCCCCeeEEeccC
Q 031365 141 TVTVPKVEVTKPDVKAIAISG 161 (161)
Q Consensus 141 ~I~~pK~~~~~~~~~~I~I~~ 161 (161)
+|.+|+........+.|.|.|
T Consensus 23 ~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 23 KIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred EEEECCccCCCCCceEEEEEC
Confidence 466777333444557777765
No 97
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=32.36 E-value=68 Score=23.22 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.1
Q ss_pred CCCCCCCeEEEEeCCeeEEEEEEEeee
Q 031365 72 PGLRKEEVKVEVEDDRVLQISGQRKIE 98 (161)
Q Consensus 72 PG~~~edi~V~v~~~~~L~I~g~~~~~ 98 (161)
.|+...++.|.+++| .++++|.-...
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCH
Confidence 578888899999987 99999997643
No 98
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=31.78 E-value=37 Score=23.05 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=13.3
Q ss_pred EEEEeCCEEEEEEeCc
Q 031365 132 KASMESGVLTVTVPKV 147 (161)
Q Consensus 132 ~A~~~nGvL~I~~pK~ 147 (161)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6778999999999643
No 99
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=30.58 E-value=1.9e+02 Score=21.99 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=30.6
Q ss_pred CCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 031365 76 KEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 145 (161)
Q Consensus 76 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 145 (161)
+++|+|++++ +.|+|+|.+. ... ..||.. + -.+....++|.|.|+-+
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG------------------~Ls--~~~~~~-~-~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRG------------------TLT--KDLRHL-Q-LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCc------------------EEE--EEcCCC-C-cEEEEEecCCEEEEEeC
Confidence 5789999997 5999998753 233 344431 0 13556677888888744
No 100
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.49 E-value=4.5 Score=25.71 Aligned_cols=12 Identities=50% Similarity=0.623 Sum_probs=10.2
Q ss_pred eEEEEeCCEEEE
Q 031365 131 IKASMESGVLTV 142 (161)
Q Consensus 131 i~A~~~nGvL~I 142 (161)
|.|.|+||||+-
T Consensus 7 IEaiYEnGVfKP 18 (67)
T COG2880 7 IEAIYENGVLKP 18 (67)
T ss_pred HHHHHhcccccc
Confidence 678999999973
No 101
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=29.24 E-value=1.8e+02 Score=22.04 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=24.8
Q ss_pred CCCeEEEEeCCeeEEEEEEEeeee--cCCCCcEEE-EeeeeeEEEEEEECCCC
Q 031365 76 KEEVKVEVEDDRVLQISGQRKIEK--EDKNDTWHR-VERSSGMFSRRFRLPEN 125 (161)
Q Consensus 76 ~edi~V~v~~~~~L~I~g~~~~~~--~~~~~~~~~-~e~~~g~f~r~~~LP~~ 125 (161)
+++++|. +| .|.|++.+.... .-..+.... .-..+|.|+-++.+|..
T Consensus 31 ~~nv~v~--~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEFS--DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEEE--CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 4555444 55 677877654321 001111221 12357889989998853
No 102
>PRK14299 chaperone protein DnaJ; Provisional
Probab=28.55 E-value=2.7e+02 Score=22.41 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=18.6
Q ss_pred EEEEEECC--CCCccCCeEEEEeCCEEEEEEeCcC
Q 031365 116 FSRRFRLP--ENVKMDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 116 f~r~~~LP--~~vd~~~i~A~~~nGvL~I~~pK~~ 148 (161)
...++.|+ +.+--..+...--+|.++|.+|...
T Consensus 203 L~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~ 237 (291)
T PRK14299 203 LYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRT 237 (291)
T ss_pred EEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCc
Confidence 33344444 3333344555556788888888653
No 103
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=27.85 E-value=53 Score=20.38 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=18.2
Q ss_pred CCCCCCeEEEEeCCeeEEEEEEE
Q 031365 73 GLRKEEVKVEVEDDRVLQISGQR 95 (161)
Q Consensus 73 G~~~edi~V~v~~~~~L~I~g~~ 95 (161)
-++.+.|.|....| .|.|+|+.
T Consensus 22 ~f~~~~I~l~t~~g-~l~I~G~~ 43 (66)
T PF07873_consen 22 SFDDEEIRLNTKKG-KLTIKGEG 43 (66)
T ss_dssp EEETTEEEEEETTE-EEEEEEEE
T ss_pred EECCCEEEEEeCCE-EEEEECce
Confidence 45788899998886 99999985
No 104
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.05 E-value=34 Score=29.55 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=51.1
Q ss_pred CceeeEEECCCeEEEEEEcCCCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCC-ccCCe
Q 031365 53 NARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENV-KMDQI 131 (161)
Q Consensus 53 ~p~~dv~e~~d~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v-d~~~i 131 (161)
+|.+.+..+++...|.+..|-.+...+.+-.-+ +.++.++ |.+.-+..+|..+ +-..-
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~~--------------------~pyflrl~~p~~~~~d~~~ 61 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFSA--------------------GPYFLRLAGPGMVEDDARP 61 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhcc--------------------chhHHhhcCcchhhhhccc
Confidence 578899999999999999997666666666554 3444442 2234445666553 33334
Q ss_pred EEEE--eCCEEEEEEeCcCC
Q 031365 132 KASM--ESGVLTVTVPKVEV 149 (161)
Q Consensus 132 ~A~~--~nGvL~I~~pK~~~ 149 (161)
.|+| ++|-..|.+||..+
T Consensus 62 n~s~d~kd~~~~vK~~K~~~ 81 (466)
T KOG3247|consen 62 NASYDAKDGYAHVKVPKFHP 81 (466)
T ss_pred cCccccccceeEEeecCCCc
Confidence 4555 67999999998654
No 105
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=25.76 E-value=3.5e+02 Score=21.72 Aligned_cols=43 Identities=14% Similarity=0.335 Sum_probs=23.7
Q ss_pred EEEeCCeeEEEEEEEeeeec---------CCCCcEEEE------eeeeeEEEEEEECCC
Q 031365 81 VEVEDDRVLQISGQRKIEKE---------DKNDTWHRV------ERSSGMFSRRFRLPE 124 (161)
Q Consensus 81 V~v~~~~~L~I~g~~~~~~~---------~~~~~~~~~------e~~~g~f~r~~~LP~ 124 (161)
+.+.+| .|+|++.++.... .....|.+. ...+|.|+-++.||.
T Consensus 46 v~v~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 46 VVISNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred eEEeCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 355677 7888887753211 111112211 235788888888753
No 106
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=25.48 E-value=81 Score=20.18 Aligned_cols=30 Identities=13% Similarity=0.410 Sum_probs=23.1
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEeCC
Q 031365 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDD 86 (161)
Q Consensus 57 dv~e~~d~~~i~~~lPG~~~edi~V~v~~~ 86 (161)
-|....+.|.|++.+=|+....|.+.-.+|
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG 43 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNG 43 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCC
Confidence 456677899999999999999999998877
No 107
>PF11730 DUF3297: Protein of unknown function (DUF3297); InterPro: IPR021724 This family is expressed in Proteobacteria and Actinobacteria. The function is not known.
Probab=25.22 E-value=1e+02 Score=19.62 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=21.1
Q ss_pred EEeCCEEEEEEeCcCCCCCCeeEEeccC
Q 031365 134 SMESGVLTVTVPKVEVTKPDVKAIAISG 161 (161)
Q Consensus 134 ~~~nGvL~I~~pK~~~~~~~~~~I~I~~ 161 (161)
....|..+|..+|......++-.|.++|
T Consensus 38 ciSEGWvrv~~gka~DR~G~Pl~iklkG 65 (71)
T PF11730_consen 38 CISEGWVRVAAGKALDRRGNPLTIKLKG 65 (71)
T ss_pred eccCCEEEeecCcccccCCCeeEEEEcc
Confidence 3478888888888877777777777765
No 108
>PRK14301 chaperone protein DnaJ; Provisional
Probab=25.09 E-value=4.1e+02 Score=22.28 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=18.5
Q ss_pred EECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 031365 120 FRLPENVKMDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 120 ~~LP~~vd~~~i~A~~~nGvL~I~~pK~~ 148 (161)
|.|.+.+--..+....-+|-++|.+|+..
T Consensus 272 Isl~eAl~G~~~~v~tldG~i~v~ip~g~ 300 (373)
T PRK14301 272 ISFVQAALGDRIEVPTLDDPVTLDIPKGT 300 (373)
T ss_pred ecHHHHhCCCeEEEecCCccEEEEECCCc
Confidence 44444455555666666787899998754
No 109
>PRK14284 chaperone protein DnaJ; Provisional
Probab=24.92 E-value=4.3e+02 Score=22.35 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=18.0
Q ss_pred EECCCCCccCCeEEEE-e-CCEEEEEEeCcCC
Q 031365 120 FRLPENVKMDQIKASM-E-SGVLTVTVPKVEV 149 (161)
Q Consensus 120 ~~LP~~vd~~~i~A~~-~-nGvL~I~~pK~~~ 149 (161)
|.|.+.+--..++... . +|.|+|.+|+...
T Consensus 286 Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~ 317 (391)
T PRK14284 286 IGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQ 317 (391)
T ss_pred ecHHHHhCCCeEEEeecCCCcEEEEEECCccC
Confidence 4444445545555543 3 4899999996543
No 110
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=24.85 E-value=1.1e+02 Score=21.07 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=17.5
Q ss_pred CCCCCCCeEEEEeCCeeEEEEEE
Q 031365 72 PGLRKEEVKVEVEDDRVLQISGQ 94 (161)
Q Consensus 72 PG~~~edi~V~v~~~~~L~I~g~ 94 (161)
-|++++++++.+-+| .+.++--
T Consensus 18 ~~l~~~ql~vsl~~G-~v~L~nl 39 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNG-EVELRNL 39 (118)
T ss_pred hcCCHHHeeeeeccC-ceEEEcc
Confidence 478899999999887 7777744
No 111
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=24.78 E-value=1.2e+02 Score=18.51 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.5
Q ss_pred EcCCCCC-CCeEEEEeCCeeEEEE
Q 031365 70 DLPGLRK-EEVKVEVEDDRVLQIS 92 (161)
Q Consensus 70 ~lPG~~~-edi~V~v~~~~~L~I~ 92 (161)
+-.||.. ..|+|.+.+| .|+|+
T Consensus 34 ~~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 34 EEAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred HHhCCCCCCEEEEEEECC-EEEEe
Confidence 4568865 6899999987 88886
No 112
>PRK05090 hypothetical protein; Validated
Probab=23.96 E-value=1.8e+02 Score=19.62 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=28.1
Q ss_pred EEECCCeEEEEEEc-CCCCCCCeEEEEeCCeeEEEEEEEee
Q 031365 58 WKETPEAHVFKADL-PGLRKEEVKVEVEDDRVLQISGQRKI 97 (161)
Q Consensus 58 v~e~~d~~~i~~~l-PG~~~edi~V~v~~~~~L~I~g~~~~ 97 (161)
+.++++.++|.+.+ ||.+++.|.= +.++ .|.|+-.-..
T Consensus 4 ~~~~~~~~~l~i~V~P~A~~~~i~~-~~~~-~lkv~v~ApP 42 (95)
T PRK05090 4 VTWDGDGLVLRLYIQPKASRDQIVG-LHGD-ELKVAITAPP 42 (95)
T ss_pred eEEeCCeEEEEEEEeeCCCcceecc-ccCC-EEEEEEecCC
Confidence 56788899999988 8988887664 3455 7888766443
No 113
>PF09985 DUF2223: Domain of unknown function (DUF2223); InterPro: IPR019248 This entry represents various prokaryotic membrane-anchored proteins predicted to be involved in the regulation of amylopullulanase. ; PDB: 1UG9_A 1ULV_A.
Probab=23.23 E-value=3.5e+02 Score=21.19 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=49.7
Q ss_pred cCceeeEEECCCeEEEEEEcC----------CCCCCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeee--EEEEE
Q 031365 52 VNARVDWKETPEAHVFKADLP----------GLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSG--MFSRR 119 (161)
Q Consensus 52 ~~p~~dv~e~~d~~~i~~~lP----------G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g--~f~r~ 119 (161)
---.+.|++.++.|++++.+. ||+..-|.|.++.+..-.-+.-..-..-.-+..|...=+-.| +....
T Consensus 32 DL~~f~v~~~g~~~~f~~~~~~l~NpW~~P~GFS~q~i~IYid~~~gg~~~~~~pG~n~~~~~~Wd~ai~i~Gw~~~~~~ 111 (228)
T PF09985_consen 32 DLTSFKVYEDGDNLVFRFTFADLTNPWNGPNGFSLQIIQIYIDTPDGGGTSTLKPGLNVEFGHPWDYAIRISGWGSYGNA 111 (228)
T ss_dssp -EEEEEEEEETTEEEEEEEESS---TT---SS-SSEEEEEEEE-S-SS-EE-S-GGG-EEESS-ECEEEEEEST--T--E
T ss_pred ceeEEEEEEcCCEEEEEEEECCCCCCcccccCccceEEEEEEecCCCCcccccCCcccCCCCCCccEEEEEEeeecccce
Confidence 335688999999999999883 777888888888531111111000000000223332211111 12456
Q ss_pred EECCCCCc---cCCeEEEEeCCEEEEEEeCcC
Q 031365 120 FRLPENVK---MDQIKASMESGVLTVTVPKVE 148 (161)
Q Consensus 120 ~~LP~~vd---~~~i~A~~~nGvL~I~~pK~~ 148 (161)
+..|+.-. .-.|.+.-.++.+++.+||..
T Consensus 112 ~~~~~G~~~~~~~~v~~~~~~~~I~~~vpk~~ 143 (228)
T PF09985_consen 112 IYDADGTAISGAPQVSVDPSGNTIIVEVPKKY 143 (228)
T ss_dssp EE-TTS-E-EE--EEEEECCCTEEEEEEEGGG
T ss_pred EEccCCccCCCcceEEeccCCCEEEEEcCHHH
Confidence 77777654 223555556899999999984
No 114
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=23.18 E-value=1.1e+02 Score=17.37 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=13.3
Q ss_pred eeEEE-CCCeEEEEE-EcCCCC
Q 031365 56 VDWKE-TPEAHVFKA-DLPGLR 75 (161)
Q Consensus 56 ~dv~e-~~d~~~i~~-~lPG~~ 75 (161)
+-|.. .++.|.+.+ ++||+-
T Consensus 4 ~~i~~~~~~~y~~~~pdlpg~~ 25 (48)
T PF03681_consen 4 AIIEKDEDGGYVAYFPDLPGCF 25 (48)
T ss_dssp EEEEE-TSSSEEEEETTCCTCE
T ss_pred EEEEECCCCeEEEEeCCccChh
Confidence 34444 777888877 778763
No 115
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=22.89 E-value=67 Score=21.17 Aligned_cols=25 Identities=28% Similarity=0.423 Sum_probs=20.3
Q ss_pred EcCCCCCCCeEEEEeCCeeEEEEEEE
Q 031365 70 DLPGLRKEEVKVEVEDDRVLQISGQR 95 (161)
Q Consensus 70 ~lPG~~~edi~V~v~~~~~L~I~g~~ 95 (161)
.+=-++.+.|.++...| .|.|+|+.
T Consensus 37 ~I~~y~~~~I~l~t~~G-~l~I~G~~ 61 (85)
T TIGR02856 37 GLVVFSPEEVKLNSTNG-KITIEGKN 61 (85)
T ss_pred ceEEECCCEEEEEcCce-EEEEEccc
Confidence 34456889999999986 99999984
No 116
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=22.80 E-value=1.4e+02 Score=18.39 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=19.8
Q ss_pred CeEEEEEEcCCCCCCCe-EEEEeCCeeEEE
Q 031365 63 EAHVFKADLPGLRKEEV-KVEVEDDRVLQI 91 (161)
Q Consensus 63 d~~~i~~~lPG~~~edi-~V~v~~~~~L~I 91 (161)
+.|.|.+..+|+..... .|.+..+....|
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 67899999999988777 477775534333
No 117
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=22.69 E-value=3.4e+02 Score=20.58 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=16.9
Q ss_pred CCCCCeEEEEeCCeeEEEEEEE
Q 031365 74 LRKEEVKVEVEDDRVLQISGQR 95 (161)
Q Consensus 74 ~~~edi~V~v~~~~~L~I~g~~ 95 (161)
+-+++++|++++ +.++++|.+
T Consensus 10 ~~P~gV~V~i~~-~~v~vkGpk 30 (178)
T COG0097 10 VIPAGVTVSIEG-QVVTVKGPK 30 (178)
T ss_pred ecCCCeEEEEec-cEEEEECCC
Confidence 347899999996 599999875
No 118
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=22.40 E-value=2.3e+02 Score=20.44 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEECCCCCccCCeEEEEeCCEEEEEEeCcCC
Q 031365 119 RFRLPENVKMDQIKASMESGVLTVTVPKVEV 149 (161)
Q Consensus 119 ~~~LP~~vd~~~i~A~~~nGvL~I~~pK~~~ 149 (161)
++.-|+++ .+.+++..++|.|.|...+.-.
T Consensus 24 ~v~~~~~l-~~~i~~~v~~g~L~I~~~~~~~ 53 (181)
T PF10988_consen 24 EVEADENL-LDRIKVEVKDGTLKISYKKNIS 53 (181)
T ss_dssp EEEEEHHH-HCCEEEEEETTEEEEEE-SCCT
T ss_pred EEEEChhh-cceEEEEEECCEEEEEECCCcC
Confidence 34444433 5778888999999999885543
No 119
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=22.21 E-value=2.1e+02 Score=26.80 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=26.5
Q ss_pred ECCC--CCccCCeEEEEeCCEEEEEEeCcCCCCCCeeEEec
Q 031365 121 RLPE--NVKMDQIKASMESGVLTVTVPKVEVTKPDVKAIAI 159 (161)
Q Consensus 121 ~LP~--~vd~~~i~A~~~nGvL~I~~pK~~~~~~~~~~I~I 159 (161)
..|. .+|-..+.-.|++|.|+|.+|-.+.. ....|+|
T Consensus 737 ~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~~--~~~~v~~ 775 (777)
T PLN02711 737 EKPRSCKIDGEEVEFGYEDCMVVVQVPWSGSS--GLSLIEY 775 (777)
T ss_pred CCCeEEEECCEEeeeEecCCEEEEEecCCCcC--CceeEEE
Confidence 4554 46777777888999999999988743 3455554
No 120
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=21.63 E-value=76 Score=21.03 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=16.6
Q ss_pred CCCCCCeEEEEeCCeeEEEEEEE
Q 031365 73 GLRKEEVKVEVEDDRVLQISGQR 95 (161)
Q Consensus 73 G~~~edi~V~v~~~~~L~I~g~~ 95 (161)
-|+.+.|.+....| .|.|+|+.
T Consensus 21 sfd~~~I~l~T~~G-~L~I~G~~ 42 (85)
T TIGR02892 21 SFDDEEILLETVMG-FLTIKGQE 42 (85)
T ss_pred EECCCEEEEEeCcE-EEEEEcce
Confidence 35677888888876 88888874
No 121
>PF13141 DUF3979: Protein of unknown function (DUF3979)
Probab=21.56 E-value=2.7e+02 Score=18.93 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=30.1
Q ss_pred CCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEE---eCCEEEEEEeCcCCCCCCeeEEec
Q 031365 102 KNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM---ESGVLTVTVPKVEVTKPDVKAIAI 159 (161)
Q Consensus 102 ~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~---~nGvL~I~~pK~~~~~~~~~~I~I 159 (161)
.+++|..+|.. ..+.+-..+-.+.+++.+ +..-++|++=|.-..-...++|.|
T Consensus 14 ~gwkyiiqe~n-----~~y~iv~~~~~~~msvelyfneyde~ritlyk~g~pittmqriai 69 (114)
T PF13141_consen 14 GGWKYIIQEQN-----GKYSIVNEILKEHMSVELYFNEYDEVRITLYKDGNPITTMQRIAI 69 (114)
T ss_pred CCcEEEEEEcC-----CcEEehHHHhhhceeeEEEecccceEEEEEEeCCCchhheeeeee
Confidence 34566666543 234455556666666665 455778887776544444455544
No 122
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=21.38 E-value=2.7e+02 Score=20.56 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=11.6
Q ss_pred eeeeEEEEEEECCCC
Q 031365 111 RSSGMFSRRFRLPEN 125 (161)
Q Consensus 111 ~~~g~f~r~~~LP~~ 125 (161)
..+|.|+-++++|..
T Consensus 65 ~~yG~~ear~k~~~~ 79 (210)
T cd00413 65 YTYGYYEARAKLAGG 79 (210)
T ss_pred EeeEEEEEEEEcCCC
Confidence 456889989998864
No 123
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=20.94 E-value=1.5e+02 Score=24.22 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=26.1
Q ss_pred CCCeEEEEeCCeeEEEEEEEeeeecCC--CCcEE---EEeeeeeEEEEEEECCC
Q 031365 76 KEEVKVEVEDDRVLQISGQRKIEKEDK--NDTWH---RVERSSGMFSRRFRLPE 124 (161)
Q Consensus 76 ~edi~V~v~~~~~L~I~g~~~~~~~~~--~~~~~---~~e~~~g~f~r~~~LP~ 124 (161)
++++ .+.+| .|+|++.+....... .+... .....+|.|+-+++||.
T Consensus 40 ~~nv--~v~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~ 90 (295)
T cd02180 40 PDAV--TTING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPG 90 (295)
T ss_pred CcCe--EecCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCC
Confidence 4554 44577 899998765321100 01111 12345788999999996
No 124
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=20.90 E-value=1.9e+02 Score=21.18 Aligned_cols=28 Identities=39% Similarity=0.476 Sum_probs=20.3
Q ss_pred EECCCCCccCCeEEEEeCCEEEEEEeCc
Q 031365 120 FRLPENVKMDQIKASMESGVLTVTVPKV 147 (161)
Q Consensus 120 ~~LP~~vd~~~i~A~~~nGvL~I~~pK~ 147 (161)
+.=|+.|-+.........|-+++++|+-
T Consensus 149 ~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 149 FENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 4467778887666666799999999873
No 125
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=20.71 E-value=4.9e+02 Score=21.47 Aligned_cols=13 Identities=31% Similarity=0.207 Sum_probs=7.2
Q ss_pred EeCCeeEEEEEEEe
Q 031365 83 VEDDRVLQISGQRK 96 (161)
Q Consensus 83 v~~~~~L~I~g~~~ 96 (161)
+++| .|.|++.+.
T Consensus 43 v~dG-~L~I~p~~~ 55 (321)
T cd02179 43 VKDG-NLVIEPTLL 55 (321)
T ss_pred EeCC-eEEEEEeec
Confidence 4454 666666543
No 126
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=20.61 E-value=2.1e+02 Score=21.79 Aligned_cols=50 Identities=20% Similarity=0.037 Sum_probs=27.8
Q ss_pred CCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 031365 77 EEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 145 (161)
Q Consensus 77 edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~p 145 (161)
..+.+..+.+ .+.|+|..+.-..+. - +......-.+.-+|++|.|.+.==
T Consensus 131 ~~i~v~~~~~-~V~V~Gtlkt~vg~~-----------------~-~~~~~k~Y~l~~~y~~G~l~L~~f 180 (188)
T PRK13726 131 TSVRVWPQYG-RVDIRGVLKTWIGDS-----------------K-PFTEIKHYILILKRENGVTWLDNF 180 (188)
T ss_pred eeEEEccCCC-EEEEEEEEEEEECCc-----------------c-cCchheEEEEEEEEcCCEEEEEEE
Confidence 4556665554 788888765432110 0 111122234677889999988643
No 127
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=20.56 E-value=1.1e+02 Score=21.33 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.4
Q ss_pred eEEEEeCCEEEEEEeCc
Q 031365 131 IKASMESGVLTVTVPKV 147 (161)
Q Consensus 131 i~A~~~nGvL~I~~pK~ 147 (161)
+.+.+.+|||+|+++..
T Consensus 30 ~D~d~qg~VlTl~f~ng 46 (106)
T COG1965 30 IDCEIQGGVLTLTFDNG 46 (106)
T ss_pred cceecCCCEEEEEECCC
Confidence 66788899999999865
No 128
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=20.48 E-value=2.2e+02 Score=17.49 Aligned_cols=44 Identities=25% Similarity=0.435 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCeeEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCCccCCeEEE--EeCCEEEEEEe
Q 031365 76 KEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS--MESGVLTVTVP 145 (161)
Q Consensus 76 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~--~~nGvL~I~~p 145 (161)
++.++|.+.+ +.+++.|.... .++.+|.. ++.. .+++.+.+...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g~--------------------l~~~~~~~-----v~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKGE--------------------LSRPIPPG-----VKVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSSSE--------------------EEEEETTT-----EEEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCEe--------------------EEEECCCC-----eeEEEEcCCCceEEEEC
Confidence 4678999997 58888876421 34667754 4555 55777766654
No 129
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=20.38 E-value=1.7e+02 Score=19.26 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=14.9
Q ss_pred ccccCceeeEEECCCeEEEEEEcCCCC
Q 031365 49 SAIVNARVDWKETPEAHVFKADLPGLR 75 (161)
Q Consensus 49 ~~~~~p~~dv~e~~d~~~i~~~lPG~~ 75 (161)
.....|.+.+...++.|..++.||.-.
T Consensus 17 ~~~~~P~~~~~~~~~~~~c~v~LP~~~ 43 (90)
T PF03368_consen 17 FTNLKPEFEIEKIGSGFICTVILPINS 43 (90)
T ss_dssp T--SS-EEEEEE--G-EEEEEE--TT-
T ss_pred CccCCceEEEEEcCCcEEEEEECCCCC
Confidence 334568899999999999999999543
No 130
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=20.15 E-value=63 Score=23.13 Aligned_cols=26 Identities=23% Similarity=0.560 Sum_probs=18.6
Q ss_pred CCCccCCeE---EEE--eCCEEEEEEeCcCC
Q 031365 124 ENVKMDQIK---ASM--ESGVLTVTVPKVEV 149 (161)
Q Consensus 124 ~~vd~~~i~---A~~--~nGvL~I~~pK~~~ 149 (161)
.++|.++++ -.. +++.|+|++|..+-
T Consensus 50 ~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~i 80 (157)
T PF14014_consen 50 AGIDLSKIKEEDIEVDEDGKTITITLPPPEI 80 (157)
T ss_pred EEEEhHHCCcceEEEcCCCCEEEEECCCcEE
Confidence 345666666 555 88899999998754
Done!