RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031365
(161 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 204 bits (521), Expect = 7e-69
Identities = 98/161 (60%), Positives = 117/161 (72%), Gaps = 10/161 (6%)
Query: 1 MSLIPSFFGNRRSSVSNPFSLDVWDPFRDFPFPSGYSPALSSQFPPETSAIVNARVDWKE 60
MS++ RRS+V +PF+ DPF F S ET+A NAR+DWKE
Sbjct: 1 MSIV------RRSNVFDPFADLWADPFDTFRSIVPAISGGGS----ETAAFANARMDWKE 50
Query: 61 TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRF 120
TPEAHVFKADLPG++KEEVKVEVED VL +SG+R EKEDKND WHRVERSSG F RRF
Sbjct: 51 TPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRF 110
Query: 121 RLPENVKMDQIKASMESGVLTVTVPKVEVTKPDVKAIAISG 161
RL E+ K++++KA +E+GVLTVTVPK EV KP+VKAI ISG
Sbjct: 111 RLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 159 bits (406), Expect = 5e-52
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 55 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSG 114
RVD KE V ADLPG+ +++V+++ +L I G+RK E + + + R+ER G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64
Query: 115 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 148
F RRF LP++ D I A+ +GVL + +PK
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPKRP 98
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 150 bits (381), Expect = 7e-48
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 23 VWDPFRDFPFPSGYSPALSSQFPPETSAIVNARVDWKETPEAHVFKADLPGLRKEEVKVE 82
++ ++ S + +V VD E V ADL G KE++K
Sbjct: 1 MYYLGKELQKRSE-------ELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR 53
Query: 83 VEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMD-QIKASMESGVLT 141
V L I +R+I + + + + RLP NV D +I E+GVLT
Sbjct: 54 VSGQNELIIEAEREITEPGV----KYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLT 109
Query: 142 VTVPKVEVTKPDVK 155
+ +P + +
Sbjct: 110 IRIPIAGTSVFKFE 123
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 149 bits (378), Expect = 5e-47
Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 2/142 (1%)
Query: 17 NPFSLDVWDPFRDFPFPSGYSPALSSQFPPETSAIVNARVDWKETPEAHVFKADLPGLRK 76
P P + + + S + E + A LPG+ K
Sbjct: 20 ATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNK 79
Query: 77 EEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVE-RSSGMFSRRFRLPENVKMDQIKASM 135
E++ + D L+I +R +++ E R +LP VK + A
Sbjct: 80 EDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF 138
Query: 136 ESGVLTVTVPKVEVTKPDVKAI 157
E+GVL+V +PK E + I
Sbjct: 139 ENGVLSVILPKAESSIKKGINI 160
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 78.3 bits (193), Expect = 5e-20
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSR 118
+ D+ EE+KV+V V+++ G+ E++ D + R F R
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKH----EERQDEHGFISRE---FHR 53
Query: 119 RFRLPENVKMDQIKASMES-GVLTVTVPKVEVTKPD 153
++R+P +V I +SM S GVLTV P+ +V+ P+
Sbjct: 54 KYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPE 89
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 78.2 bits (193), Expect = 5e-20
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSR 118
T + D+ +E+ V+ +D ++I+G+ ++D++ R F+R
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGV-VEITGKHA-ARQDEHGYISR------CFTR 54
Query: 119 RFRLPENVKMDQIKASM-ESGVLTVTVPK 146
++ LP V Q+ +S+ G LTV P
Sbjct: 55 KYTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 77.5 bits (191), Expect = 2e-19
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSR 118
P D+ EE+ V+V D +++ + E++ D + R F R
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHARH----EERPDEHGFIARE---FHR 58
Query: 119 RFRLPENVKMDQIKASMES-GVLTVTVPKVEVTKPDVKAIAI 159
R+RLP V + +++ GVL++ A
Sbjct: 59 RYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 79.2 bits (195), Expect = 2e-19
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 30/168 (17%)
Query: 14 SVSNPFSLDVWDP-----------FRDFPFPSGYSPALSSQFPP---------ETSAIVN 53
++ +P+ + P F + S P +S P S
Sbjct: 4 AIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDT 63
Query: 54 ARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSS 113
+ + + D+ EE+KV+V D +++ G+ E++ D + R
Sbjct: 64 GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDV-IEVHGKH----EERQDEHGFISRE- 117
Query: 114 GMFSRRFRLPENVKMDQIKASMES-GVLTVTVPKVEVTKPDVKAIAIS 160
F R++R+P +V I +S+ S GVLTV P+ +V+ P+ + I I+
Sbjct: 118 --FHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPE-RTIPIT 162
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 72.2 bits (177), Expect = 2e-17
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 59 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSR 118
+ + V D+ E++ V+V++D V I G+ ++D S F R
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKHNERQDDHG-------YISREFHR 59
Query: 119 RFRLPENVKMDQIKASMES-GVLTVTVPKVEVTKPDV---KAIAIS 160
R+RLP NV + S+ + G+LT + PK+ +AI +S
Sbjct: 60 RYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 67.9 bits (165), Expect = 2e-14
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 57 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMF 116
+ + H+ P ++VKV + ++V + G E++ + + F
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY-VHGVTGKEEKTE----NASHSEHREF 282
Query: 117 SRRFRLPENVKMDQIKASMESGVLTVTVPKVE 148
+ F PE V + +A + G++ V P +
Sbjct: 283 YKAFVTPEVVDASKTQAEIVDGLMVVEAPLFK 314
Score = 60.6 bits (146), Expect = 8e-12
Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
Query: 29 DFPFPSGYSPALSSQFPPETSAIVNARVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRV 88
P + P L P E + +A K+ ++ + EE+ ++ + ++
Sbjct: 78 SAIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNK- 136
Query: 89 LQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM-ESGVLTVTVP 145
L + Q+ + D S R LP +V + I+A++ VL + P
Sbjct: 137 LVVRAQKSVACGDA--------AMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAP 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.001
Identities = 29/142 (20%), Positives = 39/142 (27%), Gaps = 57/142 (40%)
Query: 4 IPSFFGNRRSSVSNPFSLDVWDPF------------------RDFPFPSG------YSP- 38
IP F R+ SN F L V PF + F + Y
Sbjct: 407 IP--FSERKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 39 ------ALSSQFPPE-TSAIVNARVDWKETPEA---HVFKADL-PGLRKEEVKVEVEDDR 87
LS I+ V W+ T + H+ D PG
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--DFGPG-------------- 507
Query: 88 VLQISGQRKIEKEDKNDTWHRV 109
SG + +K+ T RV
Sbjct: 508 --GASGLGVLTHRNKDGTGVRV 527
Score = 33.9 bits (77), Expect = 0.018
Identities = 29/190 (15%), Positives = 52/190 (27%), Gaps = 78/190 (41%)
Query: 22 DVWDPFRD-------FPFPSGYSPALSSQ--FPPET--SAIVNARVDWKE---TPEAHVF 67
D W+ F F G + +P + +I+ ++ E +P +
Sbjct: 287 DSWESFFVSVRKAITVLFFIG----VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI- 341
Query: 68 KADLPGLRKEEVKVEVE-------DDRVLQIS-----------GQ-----------RKIE 98
L +E+V+ V + ++IS G RK +
Sbjct: 342 ----SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 99 KEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP--------KVEVT 150
D R+ FS R K + L V P ++
Sbjct: 398 APSGLDQ-SRIP-----FSER------------KLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 151 KPDVKAIAIS 160
D+ +S
Sbjct: 440 NKDLVKNNVS 449
Score = 26.2 bits (57), Expect = 6.1
Identities = 18/137 (13%), Positives = 47/137 (34%), Gaps = 45/137 (32%)
Query: 36 YSPALSSQ---FPPETSA-IVNAR-------VDWKETPEAHV-FKADLPG-----LRKEE 78
Y+ AL+S E+ +V R V E ++ A PG +E
Sbjct: 1767 YA-ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 79 VKVEVED-----DRVLQI-----SGQRKI---EKEDKNDTWHRVERSSGMFSRR------ 119
++ VE +++I Q+ + + ++ + + +
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA-------LDTVTNVLNFIKLQKID 1878
Query: 120 -FRLPENVKMDQIKASM 135
L +++ +++++ +
Sbjct: 1879 IIELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.073
Identities = 21/149 (14%), Positives = 36/149 (24%), Gaps = 45/149 (30%)
Query: 18 PFSL----DVWDP--FRDFPF---------PSGYSPALSSQFPPETSAIVNARVDWKETP 62
L +V + + F + LS+ T+ I TP
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA---TTTHISLDHHSMTLTP 300
Query: 63 E------AHVFKADLPGLRKEEVKVEVEDDRVLQISGQRKIEKEDKNDTWHRV------- 109
+ L +E + + R L I + + D W V
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 110 --ERS-----SGMFSRRFR----LPENVK 127
E S + + F P +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Score = 27.5 bits (60), Expect = 2.7
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 6 SFFGN--RRSSVSNPFSLDVWDPFRDFPFPSGYSPALSSQFPPETSAIVNARVDWKETPE 63
F R S + S + + + F Y P + P+ +VNA +D+ E
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKF---YKPYICDN-DPKYERLVNAILDFLPKIE 556
Query: 64 AHVFKA---DL--PGLRKEEVKVEVEDDRVLQ 90
++ + DL L E+ + E + +Q
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 30.3 bits (68), Expect = 0.29
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 24/75 (32%)
Query: 71 LPGLRKEEVKV-EVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVK-M 128
LPG K++VK+ + + ++ QR R LP +
Sbjct: 313 LPGFDKKQVKLTQYGPEVTVEAGDQR----------------------RNIFLPPALSGR 350
Query: 129 DQIKASMESGVLTVT 143
A ++ L ++
Sbjct: 351 PITGAKFQNNYLIIS 365
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.32
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 11/40 (27%)
Query: 98 EKED-KNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 136
EK+ K +++ S +++ ++ IKA+ME
Sbjct: 18 EKQALK-----KLQASLKLYA-----DDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 1.3
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 18/38 (47%)
Query: 20 SLDVWDPFRDFPFPSGYSPALSSQFPPETSAIVNARVD 57
SL ++ D S +PAL+ + A ++
Sbjct: 28 SLKLYAD--D----S--APALA----------IKATME 47
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein
binding; NMR {Bacillus anthracis}
Length = 158
Score = 27.0 bits (60), Expect = 2.0
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 107 HRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVPKVEVTKP-DVKAIAISG 161
H + + +FS + K D+I V V P + + G
Sbjct: 74 HNMSKKGVLFSD---IASLKKGDKIYLYDNENEYEYAVTGVSEVTPDKWEVVEDHG 126
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 2.2
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 30/103 (29%)
Query: 82 EVED---DRVLQISGQRKIEKE-DKNDTWHRVER--------------SSGMFSRRFRL- 122
+V+ +L+ SG R IE E + E +S + +F+
Sbjct: 889 DVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQ 948
Query: 123 -PENVKMDQIKASME------SGVLTVTVPKVEVTKPDVKAIA 158
+ V + +I + E G T+ +PK + D +A
Sbjct: 949 HGDKVDIFEIPETGEYSVKLLKGA-TLYIPK--ALRFDRL-VA 987
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 26.3 bits (58), Expect = 2.4
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 55 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRV 88
R ++ + PE V G+ K+ V ++ + +
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQIL 37
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 26.0 bits (57), Expect = 3.9
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 55 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRV 88
+ DW +T V + ++K +V VE + +
Sbjct: 11 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 44
>4d9a_A 2-pyrone-4,6-dicarbaxylate hydrolase; structural genomics,
protein structure initiative; HET: 0GY; 1.35A
{Sphingomonas paucimobilis} PDB: 4d95_A* 4d9d_A 2qah_A
4d8l_A
Length = 303
Score = 26.6 bits (58), Expect = 4.5
Identities = 14/62 (22%), Positives = 17/62 (27%), Gaps = 11/62 (17%)
Query: 23 VWDPFRDFPFPSG--YSP---------ALSSQFPPETSAIVNARVDWKETPEAHVFKADL 71
V+ P FPF Y P AL + IV A + A
Sbjct: 34 VFGPMAQFPFSPKAKYLPRDAGPDMLFALRDHLGFARNVIVQASCHGTDNAATLDAIARA 93
Query: 72 PG 73
G
Sbjct: 94 QG 95
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 25.9 bits (58), Expect = 7.2
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 68 KADLPGLRKEEVKVEVED------DRVLQISG 93
K DLP E V E+ED ++ S
Sbjct: 132 KIDLPAADPERVAEEIEDIVGIDATDAVRCSA 163
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 25.9 bits (58), Expect = 7.4
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 68 KADLPGLRKEEVKVEVED------DRVLQISG 93
K DLP + VK ++E+ + + S
Sbjct: 134 KIDLPSADVDRVKKQIEEVLGLDPEEAILASA 165
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor,
irreversible PROT inhibitor, conformational change,
blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo
sapiens}
Length = 1451
Score = 26.3 bits (56), Expect = 7.5
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 2/51 (3%)
Query: 104 DTWHRVERSSGMFSRRFRLPENVKMDQ--IKASMESGVLTVTVPKVEVTKP 152
W + G+ F L + +SG T VE
Sbjct: 153 AQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEEFVL 203
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix,
viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Length = 82
Score = 24.4 bits (52), Expect = 8.2
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 80 KVEVEDDRVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLP 123
+ +E Q++ Q +EK + N + ++RS+ ++S P
Sbjct: 25 TIGIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPP 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,483,588
Number of extensions: 140843
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 35
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)