BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031367
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 102 bits (255), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 12/129 (9%)
Query: 33 LNDVVFVGSLQ--------ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV 84
L+ ++ VG LQ LGMKLLRT + PEYKY+LA +GY E + V+ELTYN+GV
Sbjct: 4 LHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGV 63
Query: 85 TEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 144
+Y G AY +A+S D+ ++ E + ++ GG +TR+ G + G T I DPDG+
Sbjct: 64 DKYELGTAYGHIALSVDNAAEACEKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDGY 119
Query: 145 KTVLVDNED 153
K L++ +D
Sbjct: 120 KIELIEEKD 128
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 21/144 (14%)
Query: 28 PKDLPLNDVVFVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELT 79
P L+ ++ VG L + LGMK+LR D PE KYTL LGY E +TVLELT
Sbjct: 5 PSRRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELT 64
Query: 80 YNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ--PGSIPGLNTKITS 137
YNYGVT Y AY +AI +DV +EL + + P + +
Sbjct: 65 YNYGVTSYKHDEAYGHIAIGVEDV-----------KELVADMRKHDVPIDYEDESGFMAF 113
Query: 138 FVDPDGWKTVLVDNEDFLKEIQSE 161
VDPDG+ L++ + +++ +++
Sbjct: 114 VVDPDGYYIELLNEKTMMEKAEAD 137
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 37/138 (26%)
Query: 43 QALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE- 86
+ LG+ LL+ +D P K++L L Y +++ + LELT+N+G +
Sbjct: 51 RVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDD 110
Query: 87 ----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKIT 136
Y GN+ + + I+ DVY + + +ELG K ++P G + GL
Sbjct: 111 ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL----- 161
Query: 137 SFV-DPDG-WKTVLVDNE 152
+F+ DPDG W +L N+
Sbjct: 162 AFIQDPDGYWIEILNPNK 179
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 37/138 (26%)
Query: 43 QALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE- 86
+ LGM L++ D P K++L L Y +++ + LELT+N+G +
Sbjct: 54 RVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDD 113
Query: 87 ----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKIT 136
Y GN+ + + I+ DVY + + +ELG K ++P G + GL
Sbjct: 114 ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL----- 164
Query: 137 SFV-DPDG-WKTVLVDNE 152
+F+ DPDG W +L N+
Sbjct: 165 AFIQDPDGYWIEILNPNK 182
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 37/138 (26%)
Query: 43 QALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE- 86
+ LGM L++ D P K++L L Y +++ + LELT+N+G +
Sbjct: 50 RVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDD 109
Query: 87 ----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKIT 136
Y GN+ + + I+ DVY + + +ELG K ++P G + GL
Sbjct: 110 ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL----- 160
Query: 137 SFV-DPDG-WKTVLVDNE 152
+F+ DPDG W +L N+
Sbjct: 161 AFIQDPDGYWIQILNPNK 178
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 37/138 (26%)
Query: 43 QALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE- 86
+ LGM L++ D P K++L L Y +++ + LELT+N+G +
Sbjct: 50 RVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDD 109
Query: 87 ----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKIT 136
Y GN+ + + I+ DVY + + +ELG K ++P G + GL
Sbjct: 110 ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL----- 160
Query: 137 SFV-DPDG-WKTVLVDNE 152
+F+ DPDG W +L N+
Sbjct: 161 AFIQDPDGYWIEILNPNK 178
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 45 LGMKLLR----------TVDKP-EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAY 93
LGMK+LR + P + K++ M+G+ ED V ELTYNYGV +Y GN +
Sbjct: 49 LGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPEDDHFVAELTYNYGVGDYKLGNDF 108
Query: 94 AQVAISTDDVYKSAEVVNLVTQELGGKI--TRQPGS 127
+ +++ +A + E+ + T PG
Sbjct: 109 MGITLASSQAVSNARKLEWPLTEVAEGVFETEAPGG 144
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 45 LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDV 103
LG+KL T +K A++ A D ELT Y + Y Q A DDV
Sbjct: 383 LGIKLAETHNKGYRWQHEAVIALASPDNXNAFELTPQEAEEWYRGRDVYPQAAPVADDV 441
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREASGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREASGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREASGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFRGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREASGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREASGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREASGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREASGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GAHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREASGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREASGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 27/95 (28%)
Query: 82 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 120
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREASGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 121 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151
I+RQ SIP K+ V P GW +L D
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADT 192
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 132 NTKITSFVDPDGWKTVLVDNEDFLKEIQS 160
N +T+F + + W TV+ N+D L++ S
Sbjct: 162 NVCVTNFTESEQWDTVIEGNDDLLEKYMS 190
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 21/112 (18%)
Query: 16 VVIKSAYSLLFNPKDLPLNDVVFVGSLQALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTV 75
++ K+AYSL N +D ++F G VD +Y TL L T+
Sbjct: 150 IINKNAYSLYLNSEDASTGKIIFGG------------VDNAKYTGTLTALPV-----TSS 192
Query: 76 LELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGS 127
+EL + G + V+ + D V S + +Q K R G+
Sbjct: 193 VELRVHLGSINFDG----TSVSTNADVVLDSGTTITYFSQSTADKFARIVGA 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,696,572
Number of Sequences: 62578
Number of extensions: 184983
Number of successful extensions: 352
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 33
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)