Query 031367
Match_columns 161
No_of_seqs 124 out of 1124
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 13:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 99.9 5.3E-22 1.2E-26 155.2 16.5 124 27-156 70-227 (233)
2 PLN03042 Lactoylglutathione ly 99.8 1.6E-19 3.5E-24 137.6 16.0 123 25-153 20-176 (185)
3 PRK10291 glyoxalase I; Provisi 99.8 1.3E-18 2.8E-23 124.1 14.1 112 38-153 3-122 (129)
4 TIGR00068 glyox_I lactoylgluta 99.8 2.5E-18 5.5E-23 125.9 15.9 127 27-157 12-147 (150)
5 PLN02300 lactoylglutathione ly 99.8 8.8E-18 1.9E-22 135.4 17.3 140 15-158 134-285 (286)
6 cd08358 Glo_EDI_BRP_like_21 Th 99.8 6.5E-18 1.4E-22 121.5 14.1 106 31-150 1-126 (127)
7 PLN02300 lactoylglutathione ly 99.8 8.9E-18 1.9E-22 135.4 16.0 122 28-153 20-150 (286)
8 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 7.5E-18 1.6E-22 121.6 13.7 114 31-151 2-141 (142)
9 cd07233 Glyoxalase_I Glyoxalas 99.8 6.5E-17 1.4E-21 112.9 15.0 111 33-149 1-121 (121)
10 cd08342 HPPD_N_like N-terminal 99.7 8.7E-17 1.9E-21 116.0 14.1 111 33-154 1-126 (136)
11 KOG2944 Glyoxalase [Carbohydra 99.7 1.4E-17 3.1E-22 121.6 7.3 119 28-152 18-169 (170)
12 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 2.7E-16 5.8E-21 110.0 12.7 110 32-149 1-125 (125)
13 PRK11478 putative lyase; Provi 99.7 3.5E-16 7.5E-21 110.7 13.1 113 29-150 3-128 (129)
14 TIGR03645 glyox_marine lactoyl 99.7 4.8E-16 1E-20 115.7 13.7 115 31-152 3-152 (162)
15 cd07243 2_3_CTD_C C-terminal d 99.7 4.6E-15 1E-19 108.2 14.6 110 29-151 3-125 (143)
16 TIGR03081 metmalonyl_epim meth 99.7 1.3E-15 2.8E-20 107.2 11.2 110 32-150 1-128 (128)
17 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 5.3E-15 1.1E-19 103.1 13.7 111 31-150 2-125 (125)
18 PRK04101 fosfomycin resistance 99.6 5.2E-15 1.1E-19 107.0 13.3 109 29-152 1-120 (139)
19 cd07257 THT_oxygenase_C The C- 99.6 1.9E-15 4.1E-20 111.4 11.1 115 32-154 1-128 (153)
20 cd07265 2_3_CTD_N N-terminal d 99.6 7.3E-15 1.6E-19 103.3 13.0 107 30-152 2-120 (122)
21 cd08360 MhqB_like_C C-terminal 99.6 1.1E-14 2.5E-19 104.5 13.8 109 31-153 2-122 (134)
22 cd07237 BphC1-RGP6_C_like C-te 99.6 2E-14 4.4E-19 106.0 13.8 115 28-154 5-134 (154)
23 cd07247 SgaA_N_like N-terminal 99.6 3.3E-14 7.2E-19 98.5 13.3 105 33-150 1-114 (114)
24 cd07256 HPCD_C_class_II C-term 99.6 5.4E-14 1.2E-18 104.4 14.5 110 30-152 1-124 (161)
25 cd08364 FosX FosX, a fosfomyci 99.6 5.1E-14 1.1E-18 100.9 13.2 111 29-152 1-123 (131)
26 PF00903 Glyoxalase: Glyoxalas 99.6 9.3E-15 2E-19 101.9 8.4 109 32-148 1-128 (128)
27 cd09011 Glo_EDI_BRP_like_23 Th 99.6 3.6E-14 7.9E-19 99.6 11.2 105 31-151 1-119 (120)
28 TIGR02295 HpaD 3,4-dihydroxyph 99.6 1.4E-13 3.1E-18 110.6 16.0 113 28-153 132-258 (294)
29 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 6.5E-14 1.4E-18 97.5 12.2 109 31-151 2-125 (125)
30 cd08363 FosB FosB, a fosfomyci 99.6 3.4E-14 7.5E-19 101.9 11.0 105 33-152 1-116 (131)
31 cd08351 ChaP_like ChaP, an enz 99.6 9.4E-14 2E-18 98.1 13.0 105 29-152 1-122 (123)
32 cd09014 BphC-JF8_C_like C-term 99.6 1.7E-13 3.6E-18 102.4 15.0 114 28-151 2-127 (166)
33 PRK06724 hypothetical protein; 99.6 9.6E-14 2.1E-18 99.8 13.0 106 28-153 3-125 (128)
34 cd07263 Glo_EDI_BRP_like_16 Th 99.6 1.2E-13 2.6E-18 95.3 12.9 108 35-150 1-119 (119)
35 cd08343 ED_TypeI_classII_C C-t 99.6 2.2E-13 4.9E-18 97.2 14.1 107 34-153 1-119 (131)
36 cd08355 Glo_EDI_BRP_like_14 Th 99.6 3E-13 6.6E-18 94.9 14.4 104 38-150 6-121 (122)
37 TIGR03211 catechol_2_3 catecho 99.6 2.4E-13 5.3E-18 109.9 15.6 110 29-150 142-264 (303)
38 cd08346 PcpA_N_like N-terminal 99.5 1.9E-13 4.2E-18 95.4 12.9 110 32-149 1-126 (126)
39 cd07249 MMCE Methylmalonyl-CoA 99.5 1.2E-13 2.5E-18 96.9 11.7 110 33-150 1-128 (128)
40 cd08347 PcpA_C_like C-terminal 99.5 1.9E-13 4.1E-18 101.4 13.1 108 32-152 1-121 (157)
41 cd09013 BphC-JF8_N_like N-term 99.5 2.6E-13 5.6E-18 95.3 12.9 105 29-152 3-119 (121)
42 cd07258 PpCmtC_C C-terminal do 99.5 2.6E-13 5.6E-18 99.0 13.1 107 34-156 1-119 (141)
43 cd07266 HPCD_N_class_II N-term 99.5 1.7E-13 3.7E-18 95.9 11.6 107 29-152 1-119 (121)
44 cd07242 Glo_EDI_BRP_like_6 Thi 99.5 4.3E-13 9.3E-18 94.7 13.7 108 32-151 1-128 (128)
45 KOG2943 Predicted glyoxalase [ 99.5 5.2E-14 1.1E-18 109.4 9.1 111 29-152 14-144 (299)
46 KOG2943 Predicted glyoxalase [ 99.5 5.2E-14 1.1E-18 109.4 9.1 140 10-159 122-278 (299)
47 cd07239 BphC5-RK37_C_like C-te 99.5 4.7E-13 1E-17 97.8 13.4 104 31-152 3-118 (144)
48 cd07245 Glo_EDI_BRP_like_9 Thi 99.5 1.4E-13 3E-18 93.8 9.9 104 33-148 1-114 (114)
49 cd07246 Glo_EDI_BRP_like_8 Thi 99.5 1E-12 2.2E-17 91.5 14.5 105 38-151 8-122 (122)
50 cd08361 PpCmtC_N N-terminal do 99.5 2.1E-13 4.5E-18 96.8 11.1 105 29-153 3-121 (124)
51 cd07255 Glo_EDI_BRP_like_12 Th 99.5 1E-12 2.2E-17 92.3 13.5 108 31-153 1-121 (125)
52 cd07252 BphC1-RGP6_N_like N-te 99.5 5.3E-13 1.2E-17 93.9 11.9 103 32-152 2-118 (120)
53 cd08348 BphC2-C3-RGP6_C_like T 99.5 1.2E-12 2.5E-17 93.4 13.7 111 32-154 1-123 (134)
54 cd07264 Glo_EDI_BRP_like_15 Th 99.5 6.9E-13 1.5E-17 93.0 12.0 105 33-151 1-125 (125)
55 cd07240 ED_TypeI_classII_N N-t 99.5 1.3E-12 2.7E-17 90.5 12.9 102 31-151 1-114 (117)
56 cd08359 Glo_EDI_BRP_like_22 Th 99.5 1.9E-12 4E-17 90.3 12.4 102 35-150 4-119 (119)
57 cd07262 Glo_EDI_BRP_like_19 Th 99.5 1.8E-12 4E-17 90.9 12.0 105 33-149 1-122 (123)
58 cd07267 THT_Oxygenase_N N-term 99.4 3.7E-12 8.1E-17 88.7 12.4 101 31-151 2-110 (113)
59 cd07235 MRD Mitomycin C resist 99.4 1.3E-12 2.8E-17 91.5 10.2 105 33-149 1-121 (122)
60 TIGR03213 23dbph12diox 2,3-dih 99.4 7.3E-12 1.6E-16 100.7 15.8 108 31-151 141-263 (286)
61 cd07244 FosA FosA, a Fosfomyci 99.4 2.3E-12 5.1E-17 90.6 11.4 100 32-152 1-111 (121)
62 cd08345 Fosfomycin_RP Fosfomyc 99.4 1.7E-12 3.7E-17 89.5 10.3 100 35-151 1-111 (113)
63 cd09012 Glo_EDI_BRP_like_24 Th 99.4 2.2E-12 4.7E-17 91.0 10.5 104 34-150 2-123 (124)
64 cd08350 BLMT_like BLMT, a bleo 99.4 5.7E-12 1.2E-16 88.4 11.8 96 38-151 9-119 (120)
65 cd08362 BphC5-RrK37_N_like N-t 99.4 7.3E-12 1.6E-16 87.2 12.1 103 31-152 2-118 (120)
66 cd08354 Glo_EDI_BRP_like_13 Th 99.4 9.2E-12 2E-16 86.7 12.3 105 33-151 1-122 (122)
67 cd07238 Glo_EDI_BRP_like_5 Thi 99.4 1.1E-11 2.5E-16 85.6 12.7 97 38-151 7-111 (112)
68 cd06587 Glo_EDI_BRP_like This 99.4 1.1E-11 2.4E-16 83.3 11.9 103 35-148 1-112 (112)
69 cd08349 BLMA_like Bleomycin bi 99.4 1.3E-11 2.7E-16 84.7 11.9 99 38-150 5-112 (112)
70 PF12681 Glyoxalase_2: Glyoxal 99.4 7.4E-12 1.6E-16 85.5 10.3 99 38-149 2-108 (108)
71 cd08357 Glo_EDI_BRP_like_18 Th 99.3 1.3E-11 2.8E-16 86.3 10.4 104 35-150 2-124 (125)
72 TIGR03211 catechol_2_3 catecho 99.3 1.7E-11 3.8E-16 99.1 12.4 107 30-153 2-120 (303)
73 cd07254 Glo_EDI_BRP_like_20 Th 99.3 3.9E-11 8.4E-16 83.9 12.5 103 34-152 3-118 (120)
74 cd08344 MhqB_like_N N-terminal 99.3 3.1E-11 6.8E-16 83.7 11.6 99 31-151 1-109 (112)
75 TIGR02295 HpaD 3,4-dihydroxyph 99.3 4E-11 8.7E-16 96.4 12.9 104 29-152 1-116 (294)
76 PF13669 Glyoxalase_4: Glyoxal 99.3 3.7E-11 8.1E-16 83.4 10.3 86 34-125 1-97 (109)
77 cd07261 Glo_EDI_BRP_like_11 Th 99.3 4E-11 8.7E-16 82.9 10.4 100 36-150 2-114 (114)
78 TIGR03213 23dbph12diox 2,3-dih 99.3 7.5E-11 1.6E-15 94.8 11.8 104 31-152 2-119 (286)
79 cd08356 Glo_EDI_BRP_like_17 Th 99.2 1.3E-10 2.9E-15 81.1 10.7 94 38-150 8-113 (113)
80 cd07251 Glo_EDI_BRP_like_10 Th 99.2 3.2E-10 7E-15 78.6 11.1 101 36-150 2-120 (121)
81 cd07250 HPPD_C_like C-terminal 99.0 6.5E-09 1.4E-13 79.5 9.9 90 31-126 2-113 (191)
82 COG2514 Predicted ring-cleavag 98.8 1.4E-07 3E-12 74.9 11.3 109 29-153 7-128 (265)
83 COG3324 Predicted enzyme relat 98.7 4.5E-07 9.7E-12 65.1 12.5 111 29-152 6-126 (127)
84 TIGR01263 4HPPD 4-hydroxypheny 98.6 2.1E-07 4.6E-12 77.3 9.0 91 29-125 155-267 (353)
85 TIGR01263 4HPPD 4-hydroxypheny 98.6 2.3E-06 5.1E-11 71.1 14.5 112 31-151 1-127 (353)
86 cd06588 PhnB_like Escherichia 98.6 1.9E-06 4.2E-11 61.2 12.0 51 93-149 75-128 (128)
87 COG0346 GloA Lactoylglutathion 98.6 3.6E-07 7.7E-12 62.7 7.4 113 31-150 1-138 (138)
88 PLN02875 4-hydroxyphenylpyruva 98.3 2E-06 4.3E-11 72.6 8.1 90 30-125 178-295 (398)
89 COG3565 Predicted dioxygenase 98.1 2.5E-05 5.3E-10 54.9 8.7 108 31-151 3-129 (138)
90 COG2764 PhnB Uncharacterized p 98.1 0.00015 3.2E-09 52.8 12.7 101 43-152 21-132 (136)
91 COG3607 Predicted lactoylgluta 97.9 0.00013 2.8E-09 52.0 8.7 110 33-152 4-128 (133)
92 PF13468 Glyoxalase_3: Glyoxal 97.8 0.00045 9.7E-09 51.7 10.8 111 33-152 1-138 (175)
93 PRK10148 hypothetical protein; 97.3 0.0096 2.1E-07 43.6 12.4 52 94-151 87-141 (147)
94 PLN02875 4-hydroxyphenylpyruva 97.3 0.01 2.2E-07 50.4 13.3 113 33-153 1-153 (398)
95 PF14696 Glyoxalase_5: Hydroxy 97.2 0.015 3.3E-07 42.4 12.2 112 29-154 6-129 (139)
96 KOG0638 4-hydroxyphenylpyruvat 97.2 0.00049 1.1E-08 56.2 4.7 119 28-154 13-151 (381)
97 PF13669 Glyoxalase_4: Glyoxal 97.1 0.0019 4E-08 44.4 6.0 56 94-153 1-57 (109)
98 COG3185 4-hydroxyphenylpyruvat 97.0 0.0019 4.2E-08 53.4 6.1 87 31-126 166-275 (363)
99 PRK01037 trmD tRNA (guanine-N( 96.9 0.0064 1.4E-07 50.6 8.3 101 30-151 245-354 (357)
100 KOG0638 4-hydroxyphenylpyruvat 96.0 0.0023 4.9E-08 52.4 0.6 115 28-151 174-337 (381)
101 PF14506 CppA_N: CppA N-termin 95.7 0.49 1.1E-05 33.7 13.2 96 43-154 20-117 (125)
102 TIGR03645 glyox_marine lactoyl 95.3 0.13 2.8E-06 37.9 7.8 58 92-152 4-78 (162)
103 cd08346 PcpA_N_like N-terminal 94.9 0.18 3.8E-06 34.3 7.1 59 92-153 1-62 (126)
104 cd08353 Glo_EDI_BRP_like_7 Thi 94.9 0.19 4.2E-06 35.4 7.5 57 92-152 3-70 (142)
105 cd08352 Glo_EDI_BRP_like_1 Thi 94.4 0.36 7.9E-06 32.5 7.7 57 92-152 3-59 (125)
106 COG2514 Predicted ring-cleavag 93.9 0.33 7.1E-06 39.0 7.3 67 29-104 165-244 (265)
107 cd07249 MMCE Methylmalonyl-CoA 93.4 0.49 1.1E-05 32.2 6.9 56 93-152 1-56 (128)
108 PF13468 Glyoxalase_3: Glyoxal 92.6 0.25 5.5E-06 36.7 4.8 54 93-152 1-55 (175)
109 cd07241 Glo_EDI_BRP_like_3 Thi 91.9 1.4 3.1E-05 29.7 7.6 56 93-152 2-57 (125)
110 cd07245 Glo_EDI_BRP_like_9 Thi 91.6 1 2.2E-05 29.5 6.4 55 93-154 1-55 (114)
111 cd07233 Glyoxalase_I Glyoxalas 90.7 1.5 3.2E-05 29.5 6.6 56 93-152 1-59 (121)
112 COG3185 4-hydroxyphenylpyruvat 90.5 2.5 5.5E-05 35.3 8.8 104 26-143 16-142 (363)
113 PRK11478 putative lyase; Provi 90.5 1.9 4E-05 29.5 7.1 56 92-151 6-61 (129)
114 cd07242 Glo_EDI_BRP_like_6 Thi 90.5 1.3 2.9E-05 30.2 6.3 53 92-153 1-56 (128)
115 PF00903 Glyoxalase: Glyoxalas 90.3 1.4 2.9E-05 29.6 6.2 56 92-151 1-57 (128)
116 PLN03042 Lactoylglutathione ly 89.9 2.9 6.4E-05 31.7 8.3 33 89-124 24-56 (185)
117 cd06587 Glo_EDI_BRP_like This 89.5 1.7 3.8E-05 27.8 6.1 53 95-154 1-53 (112)
118 cd08347 PcpA_C_like C-terminal 88.7 2.6 5.7E-05 30.7 7.0 52 92-152 1-54 (157)
119 cd07263 Glo_EDI_BRP_like_16 Th 87.9 2.8 6.1E-05 27.7 6.3 54 95-153 1-56 (119)
120 cd07250 HPPD_C_like C-terminal 87.2 2.9 6.2E-05 31.7 6.6 59 92-153 3-65 (191)
121 TIGR03081 metmalonyl_epim meth 86.1 3.7 8E-05 27.8 6.2 54 93-151 2-55 (128)
122 cd07255 Glo_EDI_BRP_like_12 Th 86.0 4.8 0.0001 27.2 6.7 51 92-152 2-53 (125)
123 PLN02367 lactoylglutathione ly 85.1 6.9 0.00015 31.0 7.9 60 89-152 72-149 (233)
124 cd08360 MhqB_like_C C-terminal 84.5 6.5 0.00014 27.4 7.0 52 92-152 3-57 (134)
125 cd08348 BphC2-C3-RGP6_C_like T 84.4 7.4 0.00016 26.7 7.2 52 93-152 2-55 (134)
126 PF02676 TYW3: Methyltransfera 84.2 0.31 6.8E-06 37.8 0.0 25 2-26 39-63 (205)
127 cd08364 FosX FosX, a fosfomyci 83.4 8.8 0.00019 26.7 7.3 57 92-152 4-60 (131)
128 cd08358 Glo_EDI_BRP_like_21 Th 83.1 14 0.0003 26.2 8.2 58 92-152 2-72 (127)
129 cd08342 HPPD_N_like N-terminal 82.5 8.1 0.00017 27.0 6.8 53 93-152 1-53 (136)
130 cd07257 THT_oxygenase_C The C- 81.7 6.1 0.00013 28.5 6.1 47 93-143 2-49 (153)
131 cd07237 BphC1-RGP6_C_like C-te 80.6 10 0.00022 27.4 6.9 58 91-151 8-68 (154)
132 PRK04101 fosfomycin resistance 78.7 13 0.00028 26.1 6.8 49 92-151 4-52 (139)
133 cd07252 BphC1-RGP6_N_like N-te 78.3 12 0.00026 25.4 6.4 30 92-124 2-31 (120)
134 cd08351 ChaP_like ChaP, an enz 77.9 13 0.00028 25.3 6.5 49 92-150 4-52 (123)
135 cd04895 ACT_ACR_1 ACT domain-c 77.9 7.9 0.00017 24.9 4.9 52 96-147 4-56 (72)
136 cd07240 ED_TypeI_classII_N N-t 77.3 13 0.00029 24.5 6.3 50 92-151 2-53 (117)
137 cd07235 MRD Mitomycin C resist 75.4 17 0.00037 24.3 6.5 49 93-150 1-49 (122)
138 COG0051 RpsJ Ribosomal protein 75.3 7.2 0.00016 27.0 4.4 48 97-145 12-59 (104)
139 cd08344 MhqB_like_N N-terminal 74.9 16 0.00035 24.3 6.2 28 92-123 2-29 (112)
140 cd07247 SgaA_N_like N-terminal 74.6 19 0.00041 23.7 6.5 51 94-151 2-52 (114)
141 cd08343 ED_TypeI_classII_C C-t 73.6 18 0.00038 24.9 6.3 53 94-151 1-54 (131)
142 cd09014 BphC-JF8_C_like C-term 73.5 17 0.00036 26.6 6.4 28 92-122 6-33 (166)
143 PF13670 PepSY_2: Peptidase pr 73.0 15 0.00032 23.8 5.4 45 102-152 30-74 (83)
144 cd07262 Glo_EDI_BRP_like_19 Th 72.7 21 0.00046 23.9 6.5 53 93-151 1-54 (123)
145 cd07253 Glo_EDI_BRP_like_2 Thi 72.4 19 0.00042 23.7 6.2 31 92-125 3-33 (125)
146 PF06983 3-dmu-9_3-mt: 3-demet 72.2 30 0.00064 24.0 8.2 45 89-149 69-116 (116)
147 cd09013 BphC-JF8_N_like N-term 71.8 24 0.00051 23.7 6.5 30 91-123 5-34 (121)
148 cd08363 FosB FosB, a fosfomyci 71.8 18 0.00039 25.1 6.1 49 93-152 1-49 (131)
149 PF15067 FAM124: FAM124 family 65.5 6.4 0.00014 31.2 2.8 40 94-147 195-234 (236)
150 TIGR01046 S10_Arc_S20_Euk ribo 65.5 16 0.00034 25.0 4.4 44 100-144 12-55 (99)
151 cd04897 ACT_ACR_3 ACT domain-c 65.2 21 0.00045 23.1 4.7 51 97-147 5-56 (75)
152 cd07266 HPCD_N_class_II N-term 65.2 37 0.00081 22.6 6.4 30 92-124 4-33 (121)
153 cd07265 2_3_CTD_N N-terminal d 64.6 12 0.00025 25.3 3.7 29 92-123 4-32 (122)
154 cd04882 ACT_Bt0572_2 C-termina 63.4 18 0.00038 21.5 4.1 26 92-121 39-64 (65)
155 KOG2944 Glyoxalase [Carbohydra 63.0 44 0.00095 25.1 6.6 39 29-69 112-159 (170)
156 cd07239 BphC5-RK37_C_like C-te 62.7 38 0.00083 24.0 6.3 28 92-122 4-31 (144)
157 CHL00135 rps10 ribosomal prote 62.0 17 0.00037 24.9 4.1 45 99-144 17-61 (101)
158 PF07063 DUF1338: Domain of un 61.5 19 0.00041 29.7 4.9 30 89-122 181-216 (302)
159 cd08345 Fosfomycin_RP Fosfomyc 61.1 35 0.00075 22.3 5.6 25 95-122 1-25 (113)
160 cd07256 HPCD_C_class_II C-term 61.0 51 0.0011 23.7 6.8 28 92-122 3-30 (161)
161 PTZ00039 40S ribosomal protein 60.9 20 0.00043 25.3 4.3 43 101-144 29-71 (115)
162 cd08362 BphC5-RrK37_N_like N-t 60.9 41 0.00088 22.2 5.9 28 92-122 3-30 (120)
163 cd08361 PpCmtC_N N-terminal do 60.2 51 0.0011 22.4 6.4 29 92-123 6-34 (124)
164 PRK12271 rps10p 30S ribosomal 59.8 23 0.00049 24.4 4.4 43 101-144 14-56 (102)
165 cd08354 Glo_EDI_BRP_like_13 Th 59.2 49 0.0011 21.8 7.2 49 94-151 2-50 (122)
166 PRK04235 hypothetical protein; 57.1 8.8 0.00019 29.6 2.2 18 2-19 39-56 (196)
167 cd04883 ACT_AcuB C-terminal AC 57.1 28 0.0006 21.2 4.2 29 92-124 41-71 (72)
168 cd07251 Glo_EDI_BRP_like_10 Th 56.9 50 0.0011 21.6 5.9 47 96-152 2-48 (121)
169 PRK06724 hypothetical protein; 56.8 25 0.00053 24.6 4.4 31 91-121 6-36 (128)
170 cd07244 FosA FosA, a Fosfomyci 56.5 23 0.00049 23.9 4.1 29 92-123 1-29 (121)
171 PRK00596 rpsJ 30S ribosomal pr 55.5 25 0.00055 24.0 4.1 43 101-144 16-58 (102)
172 cd07243 2_3_CTD_C C-terminal d 53.8 42 0.0009 23.7 5.2 29 91-122 5-33 (143)
173 cd04926 ACT_ACR_4 C-terminal 53.8 50 0.0011 20.5 5.1 51 95-145 3-54 (72)
174 TIGR01049 rpsJ_bact ribosomal 53.5 25 0.00054 23.9 3.8 44 100-144 12-55 (99)
175 COG0346 GloA Lactoylglutathion 52.4 25 0.00055 22.8 3.7 29 92-123 2-30 (138)
176 TIGR00068 glyox_I lactoylgluta 48.8 92 0.002 21.9 6.6 31 90-123 15-45 (150)
177 cd08357 Glo_EDI_BRP_like_18 Th 46.6 38 0.00081 22.5 3.9 26 95-123 2-27 (125)
178 cd04927 ACT_ACR-like_2 Second 46.6 72 0.0016 20.2 5.0 49 96-144 3-53 (76)
179 PF08255 Leader_Trp: Trp-opero 44.2 16 0.00036 15.9 1.1 8 1-8 1-8 (14)
180 PRK11700 hypothetical protein; 40.9 1.4E+02 0.003 22.9 6.4 54 92-151 39-98 (187)
181 cd04904 ACT_AAAH ACT domain of 40.8 72 0.0016 20.0 4.3 42 96-143 3-51 (74)
182 KOG1228 Uncharacterized conser 40.7 46 0.001 26.2 3.8 27 2-28 46-72 (256)
183 cd04900 ACT_UUR-like_1 ACT dom 40.5 66 0.0014 19.9 4.1 52 96-147 4-57 (73)
184 PF07494 Reg_prop: Two compone 40.0 35 0.00077 16.7 2.2 13 134-146 7-19 (24)
185 COG5397 Uncharacterized conser 39.4 29 0.00063 28.4 2.6 53 95-153 160-213 (349)
186 PRK13835 conjugal transfer pro 38.7 1.6E+02 0.0034 21.7 7.1 57 92-149 57-116 (145)
187 PRK06704 RNA polymerase factor 36.0 31 0.00067 27.0 2.3 27 117-146 197-223 (228)
188 PRK11191 RNase E inhibitor pro 35.6 28 0.0006 25.4 1.8 37 98-144 85-121 (138)
189 cd04906 ACT_ThrD-I_1 First of 34.8 64 0.0014 20.8 3.4 28 92-123 40-71 (85)
190 KOG2792 Putative cytochrome C 34.6 64 0.0014 26.2 3.8 43 115-157 220-266 (280)
191 PF14527 LAGLIDADG_WhiA: WhiA 33.2 87 0.0019 20.9 3.9 44 94-142 22-65 (93)
192 PF09162 Tap-RNA_bind: Tap, RN 31.9 1.1E+02 0.0024 20.5 4.1 36 95-152 46-81 (88)
193 PF00585 Thr_dehydrat_C: C-ter 31.6 91 0.002 20.6 3.8 32 91-123 49-80 (91)
194 cd04908 ACT_Bt0572_1 N-termina 31.1 99 0.0022 18.6 3.7 25 94-122 41-65 (66)
195 cd07268 Glo_EDI_BRP_like_4 Thi 29.0 84 0.0018 23.2 3.4 53 93-151 2-60 (149)
196 TIGR03884 sel_bind_Methan sele 29.0 95 0.0021 20.1 3.3 22 99-120 23-44 (74)
197 COG1590 Uncharacterized conser 29.0 44 0.00096 26.0 2.1 18 2-19 39-56 (208)
198 COG4747 ACT domain-containing 28.9 60 0.0013 23.2 2.5 26 94-123 110-135 (142)
199 PRK03381 PII uridylyl-transfer 28.2 2E+02 0.0043 26.9 6.5 56 92-147 706-762 (774)
200 PRK14707 hypothetical protein; 27.6 2.2E+02 0.0047 30.3 6.8 51 102-152 2353-2407(2710)
201 PF15499 Peptidase_C98: Ubiqui 27.1 54 0.0012 26.5 2.3 17 134-150 234-250 (275)
202 cd04925 ACT_ACR_2 ACT domain-c 25.8 1.7E+02 0.0037 18.1 4.2 48 98-145 5-54 (74)
203 cd04931 ACT_PAH ACT domain of 24.9 1.7E+02 0.0036 19.4 4.1 49 94-144 15-66 (90)
204 cd04929 ACT_TPH ACT domain of 24.2 1.9E+02 0.0041 18.3 4.2 31 113-145 20-53 (74)
205 cd04886 ACT_ThrD-II-like C-ter 23.4 1.7E+02 0.0036 17.1 3.9 25 94-122 45-72 (73)
206 PF04404 ERF: ERF superfamily; 23.3 2.7E+02 0.0059 20.0 5.4 55 96-150 24-84 (160)
207 PF00379 Chitin_bind_4: Insect 23.2 1.1E+02 0.0024 17.8 2.7 17 135-151 30-46 (52)
208 PF02630 SCO1-SenC: SCO1/SenC; 22.8 1.6E+02 0.0034 21.7 4.1 17 134-150 156-172 (174)
209 PF06185 YecM: YecM protein; 22.5 99 0.0022 23.7 2.9 54 92-151 34-93 (185)
210 cd04880 ACT_AAAH-PDT-like ACT 20.9 2.1E+02 0.0046 17.5 4.3 48 96-143 2-50 (75)
211 TIGR00318 cyaB adenylyl cyclas 20.3 2E+02 0.0043 21.3 4.2 23 96-122 6-28 (174)
212 PF04083 Abhydro_lipase: Parti 20.0 2.1E+02 0.0045 17.6 3.6 19 135-153 14-32 (63)
No 1
>PLN02367 lactoylglutathione lyase
Probab=99.89 E-value=5.3e-22 Score=155.19 Aligned_cols=124 Identities=31% Similarity=0.561 Sum_probs=101.8
Q ss_pred CCCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCC---------------CCceEEEEeeeC
Q 031367 27 NPKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEE---------------DQTTVLELTYNY 82 (161)
Q Consensus 27 ~~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~---------------~~~~~leL~~~~ 82 (161)
......++|++ +|+|+ ++|||++.++.++++++++++|+++++. .+...|||++++
T Consensus 70 ~t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~ 149 (233)
T PLN02367 70 ATKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNW 149 (233)
T ss_pred CCCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCC
Confidence 35679999999 99999 8999999999999888899999976431 124689999887
Q ss_pred CCcc------cccC----CCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 83 GVTE------YTKG----NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 83 ~~~~------~~~g----~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+... |..+ .|++||||.|+|+++++++| +++|+++..+|...++ .+.+||+|||||+|||++..
T Consensus 150 g~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL----~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 150 GTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF----EELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred CCCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHH----HHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEecc
Confidence 7541 4333 37999999999999999999 5999999988875432 57899999999999999987
Q ss_pred Cchh
Q 031367 153 DFLK 156 (161)
Q Consensus 153 ~~~~ 156 (161)
...+
T Consensus 224 ~~~~ 227 (233)
T PLN02367 224 TIGT 227 (233)
T ss_pred cccc
Confidence 6553
No 2
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.84 E-value=1.6e-19 Score=137.58 Aligned_cols=123 Identities=28% Similarity=0.531 Sum_probs=96.1
Q ss_pred ecCCCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCC---------------CceEEEEee
Q 031367 25 LFNPKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTY 80 (161)
Q Consensus 25 ~~~~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~---------------~~~~leL~~ 80 (161)
+.+....+++|++ +|+|+ ++|||++..+.+.+.++++++|+++++.. ....|||++
T Consensus 20 ~~~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~ 99 (185)
T PLN03042 20 DEATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTH 99 (185)
T ss_pred CCCCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEE
Confidence 3446779999999 99999 89999999998777777889998754210 235899987
Q ss_pred eCCCcc------ccc----CCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 81 NYGVTE------YTK----GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 81 ~~~~~~------~~~----g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
+++... +.. +.|+.||||.|+|+++++++| +++|+++...|.... ..+++||+|||||+|||++
T Consensus 100 ~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L----~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e 173 (185)
T PLN03042 100 NWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERF----EKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFD 173 (185)
T ss_pred cCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHH----HHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEE
Confidence 654321 221 247999999999999999999 699999997775422 2567899999999999999
Q ss_pred cCC
Q 031367 151 NED 153 (161)
Q Consensus 151 ~~~ 153 (161)
...
T Consensus 174 ~~~ 176 (185)
T PLN03042 174 LKR 176 (185)
T ss_pred CCC
Confidence 754
No 3
>PRK10291 glyoxalase I; Provisional
Probab=99.81 E-value=1.3e-18 Score=124.09 Aligned_cols=112 Identities=46% Similarity=0.847 Sum_probs=85.8
Q ss_pred eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCCHHHHHHH
Q 031367 38 FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEV 109 (161)
Q Consensus 38 ~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~Di~~~~~~ 109 (161)
.|+|+ ++|||++..+...+...+.++|++.++......++|..+++...+..++++.|+||+|+|+++++++
T Consensus 3 ~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~~~ 82 (129)
T PRK10291 3 RVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEK 82 (129)
T ss_pred EecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHHHH
Confidence 67888 8999999887666655677888876543334567886544433334456789999999999999999
Q ss_pred HhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCC
Q 031367 110 VNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 110 L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
| +++|+++..+|.+.+++..+.+||+|||||+|||++..+
T Consensus 83 l----~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 83 I----RQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred H----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 9 699999988776665554567899999999999999753
No 4
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.81 E-value=2.5e-18 Score=125.94 Aligned_cols=127 Identities=43% Similarity=0.735 Sum_probs=95.1
Q ss_pred CCCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEE
Q 031367 27 NPKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVA 97 (161)
Q Consensus 27 ~~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hia 97 (161)
+...++++|+. .|+|+ ++|||++..+...+.+++.+++++.++......+++..+++......+.+..|++
T Consensus 12 ~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~ 91 (150)
T TIGR00068 12 KTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIA 91 (150)
T ss_pred ccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEE
Confidence 35678999999 99999 8999999877655555555667765432234556665433322233345788999
Q ss_pred EEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCCchhh
Q 031367 98 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKE 157 (161)
Q Consensus 98 f~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~~~~ 157 (161)
|.|+|+++++++| +++|+++..+|...+++..+.+||+|||||.|||++..+-.|+
T Consensus 92 f~v~dld~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 147 (150)
T TIGR00068 92 IGVDDVYKACERV----RALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDG 147 (150)
T ss_pred EecCCHHHHHHHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhh
Confidence 9999999999999 5999999888865555445788999999999999998765554
No 5
>PLN02300 lactoylglutathione lyase
Probab=99.79 E-value=8.8e-18 Score=135.45 Aligned_cols=140 Identities=66% Similarity=1.073 Sum_probs=110.5
Q ss_pred EEEecCCce---eecCCCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeC
Q 031367 15 VVVIKSAYS---LLFNPKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY 82 (161)
Q Consensus 15 ~~~~~~~~~---~~~~~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~ 82 (161)
+...|+|+. +++..+..++.|+. .|+|+ ++|||++..+...+..+|..+++++.+......++++.+.
T Consensus 134 ~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~ 213 (286)
T PLN02300 134 FVKDPDGYKFELIQRGPTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNY 213 (286)
T ss_pred EEECCCCCEEEEEeCCCCCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecC
Confidence 556788885 55667788999999 99999 9999999876554545677777765332234568886544
Q ss_pred CCcccccCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCCchhhh
Q 031367 83 GVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 158 (161)
Q Consensus 83 ~~~~~~~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~~~~~ 158 (161)
+...+..++++.|++|.|+|++++++++ +++|+++..+|...++...+.++|+||||+.|+|++..+|.||.
T Consensus 214 ~~~~~~~g~~~~~i~~~v~di~~~~~~~----~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~ 285 (286)
T PLN02300 214 GVTEYTKGNAYAQIAIGTDDVYKTAEAI----KLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKEL 285 (286)
T ss_pred CCCccccCCceeEEEEecCCHHHHHHHH----HHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhc
Confidence 4333445678899999999999999999 59999999998888765457899999999999999999999874
No 6
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=6.5e-18 Score=121.54 Aligned_cols=106 Identities=32% Similarity=0.503 Sum_probs=80.7
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCC-----------CcEEEEEeeccCCCCceEEEEeeeCCCcccccC
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKG 90 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~-----------g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g 90 (161)
.++.|++ +|+|+ ++|||++.++.+++. +.|.++++++.++.....|||+++++..+++.+
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 3689999 99999 999999988776665 566667776543335678999988776556666
Q ss_pred CCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 91 NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 91 ~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
++ |++|.|++. ++.++| +++|+++...|. .++|++|||||+|||+.
T Consensus 81 ~~--~~hlav~~~-d~~~~l----~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 ND--FLGITIHSK-QAVSNA----KKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred CC--EEEEEEECH-HHHHHH----HHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 55 566666666 345888 699999887553 27899999999999975
No 7
>PLN02300 lactoylglutathione lyase
Probab=99.78 E-value=8.9e-18 Score=135.43 Aligned_cols=122 Identities=46% Similarity=0.746 Sum_probs=96.0
Q ss_pred CCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEE
Q 031367 28 PKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 98 (161)
Q Consensus 28 ~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf 98 (161)
+.+.+++|++ .|+|+ ++|||++..+...+...+..+|+..++...+..++|..+.+...+..+.++.|+||
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~ 99 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGI 99 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEE
Confidence 6689999999 99999 99999998776555555666788665333356788864433333334567899999
Q ss_pred EeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCC
Q 031367 99 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 99 ~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
.|+|+++++++| +++|+++...|...+++..+.+||+|||||+|||+++..
T Consensus 100 ~v~dvd~~~~~l----~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 100 AVEDVAKTVELV----KAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred EeCCHHHHHHHH----HHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 999999999999 599999998887776654578899999999999999754
No 8
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.78 E-value=7.5e-18 Score=121.58 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=82.8
Q ss_pred cceeEEE-eeCCc-------cccCCEEEEEEeCCC-----------CcEEEEEeeccCCCCceEEEEeeeCCCcc-----
Q 031367 31 LPLNDVV-FVGSL-------QALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTE----- 86 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl-------~vLG~~~~~~~~~~~-----------g~~~~~~l~~~~~~~~~~leL~~~~~~~~----- 86 (161)
.+++||+ .|+|+ ..|||++..+...++ ....++++..+. +...|||+....+..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCcCC
Confidence 5799999 99999 339999876653321 234556665432 356789875322211
Q ss_pred --cccCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 87 --YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 87 --~~~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
...+.|+.||||.|+|+++++++| +++|+++..+|...++ ..+.+||+||||+.|||+|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l----~~~G~~~~~~~~~~~~-~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARL----RKHGAELVGEVVQYEN-SYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHH----HHCCCceeCCceecCC-CeEEEEEECCCCCEEEeeec
Confidence 112357889999999999999999 6999999876655443 26889999999999999984
No 9
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.76 E-value=6.5e-17 Score=112.85 Aligned_cols=111 Identities=43% Similarity=0.716 Sum_probs=84.4
Q ss_pred eeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCC-cccccCCCeeEEEEEeCC
Q 031367 33 LNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-TEYTKGNAYAQVAISTDD 102 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~-~~~~~g~g~~Hiaf~V~D 102 (161)
++||+ .|+|+ ++|||++..+...+++.+..+++..+.......++|....+. .....+++..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 58999 99999 899999988765555456667787643113466777643332 122334577899999999
Q ss_pred HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEE
Q 031367 103 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 149 (161)
Q Consensus 103 i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~ 149 (161)
+++++++| +++|+++..+|... +..+.+||+|||||+|||+
T Consensus 81 id~~~~~l----~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERL----EEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHH----HHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 99999999 69999999888754 2357899999999999985
No 10
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.74 E-value=8.7e-17 Score=115.97 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=82.9
Q ss_pred eeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcc------cccCCCeeEEE
Q 031367 33 LNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQVA 97 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~------~~~g~g~~Hia 97 (161)
++|++ .|+|+ ++|||++.++...+ ....+++..+ ...++|........ ...+.+..|||
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 58999 99999 88999998875432 1233445432 45666642211111 12345788999
Q ss_pred EEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCCc
Q 031367 98 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 154 (161)
Q Consensus 98 f~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~ 154 (161)
|.|+|+++++++| +++|+++..+|...+++ .+.+|++||||+.|||+++..+
T Consensus 75 ~~V~Dvda~~~~l----~~~G~~v~~~p~~~~~~-~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERA----VARGAKPVQEPVEEPGE-LKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHH----HHcCCeEccCceecCCe-EEEEEEeccCCcEEEEEecCCC
Confidence 9999999999999 69999999999875553 6899999999999999997654
No 11
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.4e-17 Score=121.64 Aligned_cols=119 Identities=26% Similarity=0.382 Sum_probs=87.1
Q ss_pred CCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCC---------------CCceEEEEeeeCC
Q 031367 28 PKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEE---------------DQTTVLELTYNYG 83 (161)
Q Consensus 28 ~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~---------------~~~~~leL~~~~~ 83 (161)
+.-..+.|++ +|.|+ +++|+.+.-+..++.-.|.++|+++... ..+..+||+++++
T Consensus 18 ~~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~G 97 (170)
T KOG2944|consen 18 TPTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWG 97 (170)
T ss_pred CchhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCC
Confidence 3446778888 88888 7788887766665544455555554311 1245699999988
Q ss_pred Ccc-----ccc----CCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 84 VTE-----YTK----GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 84 ~~~-----~~~----g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
... +.. +.|++||||+|+|++++|++| +++||++...|.+ +.+..++|+.|||||+|||....
T Consensus 98 tes~~~~~~~ngN~~prGfgHIci~V~di~sac~~l----kekGV~f~Kk~~d--Gk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 98 TESPPDQAYLNGNKEPRGFGHICIEVDDINSACERL----KEKGVRFKKKLKD--GKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred CCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHH----HHhCceeeecCCC--ccccceeEEECCCCCeEEEeecC
Confidence 542 222 238999999999999999999 6999998877754 22246899999999999998753
No 12
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=2.7e-16 Score=110.02 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=77.6
Q ss_pred ceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcc---cccCCCeeEEEEE
Q 031367 32 PLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQVAIS 99 (161)
Q Consensus 32 ~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~---~~~g~g~~Hiaf~ 99 (161)
+++|++ .|+|+ ++|||++..+...+..++..+|+..++ ...++|+....... .....++.||||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 579999 99999 999999865543333334556776542 45688863222111 1123478999999
Q ss_pred eCC---HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEE
Q 031367 100 TDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 149 (161)
Q Consensus 100 V~D---i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~ 149 (161)
|+| +++++++| +++|+++..+|...+++ .+.+||+|||||+|||.
T Consensus 78 v~~~~~v~~~~~~l----~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERL----RADGYLIIGEPRTTGDG-YYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHH----HHCCCEEEeCceecCCC-eEEEEEECCCCCEEEeC
Confidence 964 78888888 69999999877655443 45688999999999984
No 13
>PRK11478 putative lyase; Provisional
Probab=99.71 E-value=3.5e-16 Score=110.73 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=76.7
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCC-CcEEEEEeeccCCCCceEEEEeeeCCCc---ccccCCCeeE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPE-YKYTLAMLGYAEEDQTTVLELTYNYGVT---EYTKGNAYAQ 95 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~-g~~~~~~l~~~~~~~~~~leL~~~~~~~---~~~~g~g~~H 95 (161)
...+++||+ .|+|+ ++|||++..+...+. +.|.. .+... +...++|+...... ......++.|
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~---~~~~l~l~~~~~~~~~~~~~~~~g~~h 78 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALN---GQYVIELFSFPFPPERPSRPEACGLRH 78 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecC---CCcEEEEEEecCCCCCCCCCCCCceeE
Confidence 456799999 99999 999999865422211 22322 12222 24678885322111 1122356889
Q ss_pred EEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 96 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 96 iaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
|||.|+|+++++++| +++|+++...+....++ .+++||+|||||.|||++
T Consensus 79 i~f~v~d~~~~~~~l----~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 79 LAFSVDDIDAAVAHL----ESHNVKCEAIRVDPYTQ-KRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEEeCCHHHHHHHH----HHcCCeeeccccCCCCC-CEEEEEECCCCCEEEEEe
Confidence 999999999999999 69999987443322232 578999999999999987
No 14
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.70 E-value=4.8e-16 Score=115.74 Aligned_cols=115 Identities=18% Similarity=0.131 Sum_probs=79.8
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEe----C--------------CCCcEEEEEeeccCCCCceEEEEeeeCC
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVD----K--------------PEYKYTLAMLGYAEEDQTTVLELTYNYG 83 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~----~--------------~~g~~~~~~l~~~~~~~~~~leL~~~~~ 83 (161)
.+++||+ .|+|+ ++|||++..+.. . ....+.++++..++ ...|||+...+
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 5799999 99999 899998864311 0 01225667777543 45699975433
Q ss_pred Ccc-c----ccCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCC-ccc-CC-CceEEEEEECCCCCEEEEEecC
Q 031367 84 VTE-Y----TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP-GSI-PG-LNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 84 ~~~-~----~~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p-~~~-~~-~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
... . ..+.|..||||.|+|+++++++| +++|+++..++ ... ++ ...+.+||+|||||+|||+++.
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERI----VAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHH----HHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 211 1 12357899999999999999999 59998765432 211 11 1247899999999999999974
No 15
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.66 E-value=4.6e-15 Score=108.24 Aligned_cols=110 Identities=12% Similarity=0.124 Sum_probs=75.2
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCc-EEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYK-YTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 98 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~-~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf 98 (161)
...+++||+ .|+|+ ++|||++..+...+++. ...+|+..+. ....+.+. .. .+++++|+||
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~--~~h~~~~~--~~-----~~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN--KPHDIAFV--GG-----PDGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC--CcceEEEe--cC-----CCCCceEEEE
Confidence 457899999 99999 99999987665333332 2234554332 12233332 11 1246899999
Q ss_pred EeCCHHH---HHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 99 STDDVYK---SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 99 ~V~Di~~---~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
.|+|+++ ++++| +++|+++...|.....+..+.+||+|||||+|||+..
T Consensus 74 ~v~d~~~l~~~~~~l----~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 74 FLESWEDVLKAGDII----SMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EcCCHHHHHHHHHHH----HHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 9999876 45566 6999998877754332235789999999999999763
No 16
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.66 E-value=1.3e-15 Score=107.23 Aligned_cols=110 Identities=21% Similarity=0.311 Sum_probs=79.7
Q ss_pred ceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCc-c---c--ccCCCeeEE
Q 031367 32 PLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-E---Y--TKGNAYAQV 96 (161)
Q Consensus 32 ~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~-~---~--~~g~g~~Hi 96 (161)
+++|+. .|+|+ ++|||+...........+..+++..+ ...++|+...... . + ..+.+..||
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 589999 99999 89999997665444434566676654 3568886432211 1 1 123577899
Q ss_pred EEEeCCHHHHHHHHhHHHHhcCCeeecC-CcccCCCceEEEEE--ECCCCCEEEEEe
Q 031367 97 AISTDDVYKSAEVVNLVTQELGGKITRQ-PGSIPGLNTKITSF--VDPDGWKTVLVD 150 (161)
Q Consensus 97 af~V~Di~~~~~~L~~~~~~~Gv~i~~~-p~~~~~~~~~~~f~--~DPDG~~IEl~~ 150 (161)
||.|+|+++++++| +++|+++..+ |...+++ .+.+|+ +||||+.|||+|
T Consensus 77 ~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~~g-~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETL----KEKGVRLIDEEPRIGAGG-KPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHH----HHCCCcccCCCCccCCCC-CEEEEecccccCcEEEEecC
Confidence 99999999999999 5999998864 5554443 466777 799999999975
No 17
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.66 E-value=5.3e-15 Score=103.08 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=77.4
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCC-CcEEEEEeeccCCCCceEEEEeeeCCCc---ccccCCCeeEEE
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPE-YKYTLAMLGYAEEDQTTVLELTYNYGVT---EYTKGNAYAQVA 97 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~-g~~~~~~l~~~~~~~~~~leL~~~~~~~---~~~~g~g~~Hia 97 (161)
.+++|++ .|+|+ ++|||++..+....+ ..+.+ .+..++ ...++|....... ....+.+..|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 5799999 99999 899999976643322 23432 233221 3567775322211 112235788999
Q ss_pred EEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 98 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 98 f~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
|.|+|+++++++| +++|+++...|....+ ..+.+|++||+||.|||+|
T Consensus 78 ~~v~d~~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHL----KAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHH----HHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 9999999999999 5999998876543333 2568999999999999975
No 18
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.65 E-value=5.2e-15 Score=107.03 Aligned_cols=109 Identities=21% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 99 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~ 99 (161)
|+.+++|++ .|+|+ ++|||++..+.. ..+++..+ ...+.|.............++.|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEE
Confidence 567899999 99999 999999875531 12455543 245555322111111123467899999
Q ss_pred eC--CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 100 TD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 100 V~--Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
++ |+++++++| +++|+++..+|...++ ..+.+||+|||||+|||.+..
T Consensus 71 v~~~dv~~~~~~l----~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRL----KENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHH----HHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 98 899999999 6999998877665444 368999999999999999863
No 19
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.65 E-value=1.9e-15 Score=111.39 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=77.8
Q ss_pred ceeEEE-eeCCc--------cccCCEEEEEEeCC-CCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeC
Q 031367 32 PLNDVV-FVGSL--------QALGMKLLRTVDKP-EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 101 (161)
Q Consensus 32 ~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~-~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~ 101 (161)
+|+||+ .|+|+ ++|||++..+...+ .+....+|+..++. ...++. +...... ..+++++||||.|+
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~~~~l~~-~~~~g~~Hiaf~v~ 76 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRG--EEYVDH-HTLALAQ-GPESGVHHAAFEVH 76 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCC--CCcccc-hHHHHhc-CCCCceeEEEEEcC
Confidence 589999 99999 99999987665443 23344566665321 111111 0000000 11357899999999
Q ss_pred CHHHHH---HHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCCc
Q 031367 102 DVYKSA---EVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 154 (161)
Q Consensus 102 Di~~~~---~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~ 154 (161)
|++++. ++| +++|+++.++|.....+...++||+|||||.|||+.....
T Consensus 77 die~~~~~~~~L----~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~~ 128 (153)
T cd07257 77 DFDAQGLGHDYL----REKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGDL 128 (153)
T ss_pred CHHHHHHHHHHH----HHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCcee
Confidence 999875 777 6999999887765443435678999999999999976543
No 20
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.64 E-value=7.3e-15 Score=103.31 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=74.0
Q ss_pred CcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEe
Q 031367 30 DLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 100 (161)
Q Consensus 30 ~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V 100 (161)
+++++|++ .|+|+ ++|||++..+.. .+. +|+..........+.|. .. ...++.|+||.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~---~~~~~~~~~~~~~~~l~--~~-----~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QGR---VYLKAWDEFDHHSIVLR--EA-----DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cce---EEEEccCCCcccEEEec--cC-----CCCCeeEEEEEe
Confidence 47899999 99999 999999876532 111 23432111123344442 11 124678999999
Q ss_pred C---CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 101 D---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 101 ~---Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
. |+++++++| +++|+++...|.....+.++.+||+|||||+|||.+..
T Consensus 70 ~~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARL----QAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHH----HHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 8 678888888 69999988766433333357899999999999998764
No 21
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.64 E-value=1.1e-14 Score=104.54 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=76.8
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeC
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 101 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~ 101 (161)
.+++|++ .|+|+ ++|||++..+... ..+|+..++......+.|... . . ...+++||||.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-----~~~~~~~~~~~~~~~i~l~~~-~-~---~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-----RGAFLRAAGGGDHHNLFLIKT-P-A---PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-----cEEEEECCCCCCCcEEEEecC-C-C---CCCcceEEEEEeC
Confidence 5799999 99999 9999998766431 124565432123455666321 1 1 1357899999999
Q ss_pred CHHHHH---HHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCC
Q 031367 102 DVYKSA---EVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 102 Di~~~~---~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
|++++. ++| +++|+++...|...+.+..+++||+||||++|||.....
T Consensus 72 d~~~~~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 72 DIDEVMLGGNHM----LRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CHHHHHHHHHHH----HHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 988665 366 699999887665444433567999999999999997644
No 22
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.62 E-value=2e-14 Score=106.01 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=81.0
Q ss_pred CCCcceeEEE-eeCCc--------cccCCEEEEEEeCC---CCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeE
Q 031367 28 PKDLPLNDVV-FVGSL--------QALGMKLLRTVDKP---EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQ 95 (161)
Q Consensus 28 ~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~---~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~H 95 (161)
+..++|+||+ .|+|+ ++|||++..+.... ++...++|+..++ .+..+.+... ..+.+++|
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~H 76 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHH 76 (154)
T ss_pred cCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEE
Confidence 4568899999 99999 99999987654332 1134456665432 2334555311 12357899
Q ss_pred EEEEeCCHH---HHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCCc
Q 031367 96 VAISTDDVY---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 154 (161)
Q Consensus 96 iaf~V~Di~---~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~ 154 (161)
|||.|+|.+ +++++| +++|+++..+|...+.+..+.+|++||||++|||......
T Consensus 77 iaf~V~d~~~l~~~~~~L----~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~~ 134 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRV----RARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGRT 134 (154)
T ss_pred EEEEcCCHHHHHHHHHHH----HHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCceE
Confidence 999998765 567777 6999999877765444446789999999999999887543
No 23
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.61 E-value=3.3e-14 Score=98.45 Aligned_cols=105 Identities=23% Similarity=0.201 Sum_probs=75.2
Q ss_pred eeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCCH
Q 031367 33 LNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDV 103 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~Di 103 (161)
++|++ .|+|+ ++|||++..... +.+.+ +++..++ ...+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 47999 99999 899999976543 22334 3444332 2344453222111 1223456999999999
Q ss_pred HHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 104 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 104 ~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
++++++| +++|+++..+|...+++ ++.+||+|||||.|||++
T Consensus 73 ~~~~~~l----~~~g~~~~~~~~~~~~~-~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARV----EAAGGKVLVPPTDIPGV-GRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHH----HHCCCEEEeCCcccCCc-EEEEEEECCCCCEEEeEC
Confidence 9999999 69999999888876643 689999999999999975
No 24
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.60 E-value=5.4e-14 Score=104.44 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=72.3
Q ss_pred CcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEe
Q 031367 30 DLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 100 (161)
Q Consensus 30 ~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V 100 (161)
+++|+||+ .|+|+ ++|||++......+.+.....|+...+ ....+.+.. + .+.++.|+||.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~--~-----~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG--G-----NGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec--C-----CCCceeEEEEEc
Confidence 47899999 99999 999999875543333333345554322 123344421 1 234688999999
Q ss_pred CC---HHHHHHHHhHHHHhcCCee--ecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 101 DD---VYKSAEVVNLVTQELGGKI--TRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 101 ~D---i~~~~~~L~~~~~~~Gv~i--~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+| +++++++| +++|+.+ ...|...+....+++||+|||||.|||++..
T Consensus 72 ~~~~~v~~~~~~L----~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHNIIRTCDLL----AAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHHHHHHHHHH----HHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 87 56666677 6999863 3344322212246799999999999999754
No 25
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=5.1e-14 Score=100.93 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=74.0
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcE-EEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 98 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~-~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf 98 (161)
|+.+++|++ .|+|+ ++|||++..+........ ...++..+ ...++|. ..... ..++..||||
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~-~~~~~---~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG----GLWIAIM-EGDSL---QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC----CeEEEEe-cCCCC---CCCCceEEEE
Confidence 467899999 99999 999998876642211000 00122222 2456664 21111 2235789999
Q ss_pred EeC--CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 99 STD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 99 ~V~--Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
.|+ |+++++++| +++|+++.. |....++.++.+||+|||||.|||.+..
T Consensus 73 ~v~~~~ld~~~~~l----~~~gv~~~~-~~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERI----KALGVEMKP-PRPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHH----HHCCCEEec-CCccccCCceEEEEECCCCCEEEEecCC
Confidence 998 688888888 699998764 3333333468999999999999999764
No 26
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.58 E-value=9.3e-15 Score=101.93 Aligned_cols=109 Identities=22% Similarity=0.232 Sum_probs=73.1
Q ss_pred ceeEEE-eeCCc--------cccCCEEEEEEeC--CCCcEEEEEeeccCCCCceEEEEeeeCCCcccccC-----CCeeE
Q 031367 32 PLNDVV-FVGSL--------QALGMKLLRTVDK--PEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKG-----NAYAQ 95 (161)
Q Consensus 32 ~i~Hv~-~V~Dl--------~vLG~~~~~~~~~--~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g-----~g~~H 95 (161)
+|+||+ .|+|+ ++|||++...... ..+....+++..+ ...++|...........+ .+..|
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 76 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG----EGHIELFLNPSPPPRASGHSFPEHGGHH 76 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST----SSCEEEEEEESSSSSSEEEHHHSHTSEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc----ccceeeeeecccccccccccccccccee
Confidence 589999 99999 9999999888762 2223344455533 234556544332211111 12356
Q ss_pred EEEEeC---CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEE
Q 031367 96 VAISTD---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 148 (161)
Q Consensus 96 iaf~V~---Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl 148 (161)
+++.+. |+++++++| ++.|+++..+|.....+....+||+|||||.|||
T Consensus 77 i~~~~~~~~dl~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 77 IAFLAFDVDDLDAAYERL----KAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEEEESSHHHHHHHHHHH----HHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEEEeccHHHHHHHHHHH----hhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 666666 566777777 6999999988876655545567899999999997
No 27
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=3.6e-14 Score=99.57 Aligned_cols=105 Identities=11% Similarity=0.213 Sum_probs=72.4
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeC----CCcccccCCCeeEEE
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY----GVTEYTKGNAYAQVA 97 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~----~~~~~~~g~g~~Hia 97 (161)
+++.|+. .|+|+ ++|||++..+. . .+ .. +.. ...+.+...+ .......+++..||+
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~--~--~~-~~-~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDF--G--EN-VT-FEG-----GFALQEGYSWLEGISKADIIEKSNNFELY 69 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeecc--C--ce-EE-Eec-----cceeccchhhhccCCcccccccCCceEEE
Confidence 4689999 99999 89999986432 1 12 11 221 1222221100 011112233457999
Q ss_pred EEeCCHHHHHHHHhHHHHhcCC-eeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 98 ISTDDVYKSAEVVNLVTQELGG-KITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 98 f~V~Di~~~~~~L~~~~~~~Gv-~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
|.|+|+++++++| +++|+ ++..+|...+++ .+.+||+|||||+|||.++
T Consensus 70 ~~v~dvd~~~~~l----~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 70 FEEEDFDAFLDKL----KRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EEehhhHHHHHHH----HhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 9999999999999 58875 788888887775 6899999999999999986
No 28
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.57 E-value=1.4e-13 Score=110.65 Aligned_cols=113 Identities=24% Similarity=0.328 Sum_probs=76.9
Q ss_pred CCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEE
Q 031367 28 PKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 98 (161)
Q Consensus 28 ~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf 98 (161)
+.+++++||+ .|+|+ ++|||++..+.....+.+...|+.... ....+.+. . . .+.+++|+||
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~-~-----~~~~~~Hiaf 202 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG--GVHDIALT-N-G-----NGPRLHHIAY 202 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC--CcCceEee-c-C-----CCCceeeEEE
Confidence 4568999999 99999 899999876654444444445554322 12234442 1 1 2357899999
Q ss_pred EeCCHH---HHHHHHhHHHHhcCCe--eecCCcccCCCceEEEEEECCCCCEEEEEecCC
Q 031367 99 STDDVY---KSAEVVNLVTQELGGK--ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 99 ~V~Di~---~~~~~L~~~~~~~Gv~--i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
.|+|.+ +.+++| +++|++ +...|...+.+..+++|++|||||+|||++...
T Consensus 203 ~v~d~~~v~~~~~~l----~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 258 (294)
T TIGR02295 203 WVHDPLNIIKACDIL----ASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGDY 258 (294)
T ss_pred EcCCHHHHHHHHHHH----HhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEeccc
Confidence 999954 445666 699998 666665433333467999999999999998643
No 29
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.57 E-value=6.5e-14 Score=97.52 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=76.3
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCC---cccccCCCeeEEEE
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV---TEYTKGNAYAQVAI 98 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~---~~~~~g~g~~Hiaf 98 (161)
.+++|+. .|+|+ ++|||++..+.... .+ +++..++ ..++|...... .....+.+..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~--~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GR--KALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--Cc--eEEEeCC----EEEEEecCCCccCcCccCCCCCCceEEE
Confidence 5799999 99999 89999997764321 12 2333332 45666422211 11123356789999
Q ss_pred EeCC-HHHHHHHHhHHHHhcCCeeecCCcccCC--CceEEEEEECCCCCEEEEEec
Q 031367 99 STDD-VYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 99 ~V~D-i~~~~~~L~~~~~~~Gv~i~~~p~~~~~--~~~~~~f~~DPDG~~IEl~~~ 151 (161)
.+++ +++++++| +++|+++...|....+ +.++.+||+|||||+|||++.
T Consensus 74 ~~~~~~~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 74 ITEPPIDELVAHL----EAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred EecccHHHHHHHH----HHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 9985 99999999 5999999877764422 225789999999999999874
No 30
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.57 E-value=3.4e-14 Score=101.89 Aligned_cols=105 Identities=23% Similarity=0.236 Sum_probs=72.6
Q ss_pred eeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCC-
Q 031367 33 LNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD- 102 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~D- 102 (161)
|+||+ .|+|+ ++|||++....+ .. +++..+ ...+++.............+..||||.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~~--~~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----KT--AYFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----cc--ceEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 68999 99999 899999865421 11 234443 245666322221111122467899999984
Q ss_pred -HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 103 -VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 103 -i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+++++++| +++|+++..+|....+ ..+.+||+|||||+|||++..
T Consensus 71 dld~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRL----KEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHH----HHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCc
Confidence 88888998 6999998765543333 257899999999999999975
No 31
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.57 E-value=9.4e-14 Score=98.07 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=74.7
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 99 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~ 99 (161)
|.++++|++ .|+|+ ++|||+..... +.+. ++..++ ...+++. .. . ...+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~--~~~~~~---~~~l~~~-~~-~----~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFA--VVKLDN---GVSLDFA-QP-D----GEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEE--EEEcCC---CcEEEEe-cC-C----CCCCcceEEEE
Confidence 457899999 99999 89999987632 2232 233222 3556663 21 1 11245799999
Q ss_pred eC--CHHHHHHHHhHHHHhcCCeeecCCcccC------CCceEEEEEECCCCCEEEEEecC
Q 031367 100 TD--DVYKSAEVVNLVTQELGGKITRQPGSIP------GLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 100 V~--Di~~~~~~L~~~~~~~Gv~i~~~p~~~~------~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
|+ |+++++++| +++|+++..+|.... ....+.+||+|||||+|||++++
T Consensus 66 v~~~dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 66 VSEEEFDRIFARI----RERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred eCHHHHHHHHHHH----HHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 97 589999999 699999987776431 12368999999999999999873
No 32
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.57 E-value=1.7e-13 Score=102.43 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=77.7
Q ss_pred CCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEE
Q 031367 28 PKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 98 (161)
Q Consensus 28 ~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf 98 (161)
+.+.+|+|++ .|+|+ ++|||++..+.....+.....|+.... ....+.+. .... ...++++||||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~--~~~~--~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYT--RDPA--GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEe--cCCC--CCCCCceEEEE
Confidence 4567899999 99999 899999876654443333345665432 12334342 1111 12246789999
Q ss_pred EeCCHH---HHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 99 STDDVY---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 99 ~V~Di~---~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
.|+|.+ +++++| +++|+++..+|...+......+||+|||||+|||++.
T Consensus 76 ~v~~~~~l~~~~~~l----~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 76 ALDTREDVLRAADIF----LENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ECCCHHHHHHHHHHH----HHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 999654 667777 6999998777765433223468999999999999987
No 33
>PRK06724 hypothetical protein; Provisional
Probab=99.57 E-value=9.6e-14 Score=99.75 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=70.7
Q ss_pred CCCcceeEEE-eeCCc--------c---ccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeE
Q 031367 28 PKDLPLNDVV-FVGSL--------Q---ALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQ 95 (161)
Q Consensus 28 ~~~~~i~Hv~-~V~Dl--------~---vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~H 95 (161)
.|..+++||+ +|+|+ + .|||+......+..+. ..+.|. ..... .....+..|
T Consensus 3 ~~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g~--------------~~l~l~-~~~~~-~~~~~g~~h 66 (128)
T PRK06724 3 TLRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTGE--------------SEIYFK-EVDEE-IVRTLGPRH 66 (128)
T ss_pred ccCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCCC--------------eeEEEe-cCCcc-ccCCCCcee
Confidence 3678899999 99999 5 5577764322111111 223231 11110 112235789
Q ss_pred EEEEe---CCHHHHHHHHhHHHHhcCCeeecCCcccCC--CceEEEEEECCCCCEEEEEecCC
Q 031367 96 VAIST---DDVYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 96 iaf~V---~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~--~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
+||.| +|+++++++| +++|+++..+|...+. ...+.+||+|||||.|||+..+.
T Consensus 67 ~af~v~~~~dvd~~~~~l----~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~~ 125 (128)
T PRK06724 67 ICYQAINRKVVDEVAEFL----SSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTPN 125 (128)
T ss_pred EEEecCChHHHHHHHHHH----HHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCCC
Confidence 99998 6788888888 6999999888865442 22478899999999999988743
No 34
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=1.2e-13 Score=95.27 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=75.6
Q ss_pred EEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcc--cccCCCeeEEEEEeCCH
Q 031367 35 DVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAISTDDV 103 (161)
Q Consensus 35 Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~--~~~g~g~~Hiaf~V~Di 103 (161)
||+ .|+|+ ++|||++..+..... ...++++..++. ....++|........ .....+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 889 99999 899999987754222 233444553321 134566642222111 12234677999999999
Q ss_pred HHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 104 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 104 ~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
++++++| +++|+++..+|...++ ++.+||+|||||+|||++
T Consensus 79 ~~~~~~l----~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEEL----KARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHH----HhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 9999999 5999999988754333 588999999999999975
No 35
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.56 E-value=2.2e-13 Score=97.22 Aligned_cols=107 Identities=23% Similarity=0.253 Sum_probs=76.7
Q ss_pred eEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCCHH
Q 031367 34 NDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 104 (161)
Q Consensus 34 ~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~Di~ 104 (161)
+||+ .|+|+ ++|||++......+ +....+|+..++ ....+.+... . ...++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~--~----~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPG--P----ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcC--C----CCCCeeEEEEEcCCHH
Confidence 5999 99999 89999997765433 333445666443 2334555321 1 1356889999999875
Q ss_pred ---HHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCC
Q 031367 105 ---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 105 ---~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
+++++| +++|+++..+|...+.+..+.+||+|||||+|||.+...
T Consensus 72 ~~~~~~~~l----~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRL----AANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHH----HHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 566777 699999988776544444578899999999999998754
No 36
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.56 E-value=3e-13 Score=94.88 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=74.6
Q ss_pred eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCccc----ccCCCeeEEEEEeCCHHH
Q 031367 38 FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEY----TKGNAYAQVAISTDDVYK 105 (161)
Q Consensus 38 ~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~----~~g~g~~Hiaf~V~Di~~ 105 (161)
.|+|+ ++|||++......+.+.+..+.+..++ ..+.|......... ....+..|++|.|+|+++
T Consensus 6 ~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~ 81 (122)
T cd08355 6 RYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD----GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDA 81 (122)
T ss_pred EECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC----EEEEEecCCCcccccccccCCCceEEEEEEECCHHH
Confidence 67788 899999988765444444444455432 34555322221111 122345799999999999
Q ss_pred HHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 106 SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 106 ~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
+++++ +++|+++..+|...+++ .+.++|+|||||+|+|.+
T Consensus 82 ~~~~l----~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 82 HYERA----RAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHH----HHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 99999 59999999998887775 678899999999999975
No 37
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.55 E-value=2.4e-13 Score=109.94 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=74.4
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcE-EEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 98 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~-~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf 98 (161)
.+.+|+||+ .|+|+ ++|||++..+...+.+.. ..+|+..+. ....+.+. . . +..++++||||
T Consensus 142 ~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~-~----~~~g~~~Hiaf 213 (303)
T TIGR03211 142 GARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSN--KAHDIAFV-G-D----PEPGKLHHVSF 213 (303)
T ss_pred CceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCC--CCccccee-c-C----CCCCceEEEEE
Confidence 467899999 99999 999999876654443332 344665332 12223221 1 1 11224899999
Q ss_pred EeCCH---HHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 99 STDDV---YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 99 ~V~Di---~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
.|+|. ++++++| +++|+++..+|...+....+.+||+|||||+|||+.
T Consensus 214 ~v~~~~~v~~~~~~l----~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 214 FLDSWEDVLKAADVM----SKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred EcCCHHHHHHHHHHH----HhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 99975 4456667 699999988776443323578999999999999984
No 38
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.55 E-value=1.9e-13 Score=95.41 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=73.1
Q ss_pred ceeEEE-eeCCc--------cccCCEEEEEEeCCCC--cEEEEEeeccCCCCceEEEEeeeCCCcc--cccCCCeeEEEE
Q 031367 32 PLNDVV-FVGSL--------QALGMKLLRTVDKPEY--KYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAI 98 (161)
Q Consensus 32 ~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g--~~~~~~l~~~~~~~~~~leL~~~~~~~~--~~~g~g~~Hiaf 98 (161)
+++||+ .|+|+ ++|||++..+....++ ... .++..........|+|........ .....+..|+||
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f 79 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYH-LFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAF 79 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEE-EEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEE
Confidence 478999 99999 8999999877543221 222 333322111345688853322211 112245789999
Q ss_pred EeCC---HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEE
Q 031367 99 STDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 149 (161)
Q Consensus 99 ~V~D---i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~ 149 (161)
.|+| ++++++++ +++|+++...+.. . ..+.+||+|||||+|||+
T Consensus 80 ~v~~~~~~~~~~~~~----~~~g~~~~~~~~~--~-~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 80 SVPSEASLDAWRERL----RAAGVPVSGVVDH--F-GERSIYFEDPDGLRLELT 126 (126)
T ss_pred EcCCHHHHHHHHHHH----HHcCCcccceEee--c-ceEEEEEECCCCCEEEeC
Confidence 9995 57788888 6999998754432 2 368899999999999985
No 39
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.55 E-value=1.2e-13 Score=96.93 Aligned_cols=110 Identities=19% Similarity=0.276 Sum_probs=77.9
Q ss_pred eeEEE-eeCCc--------cccCCEEEEEEeCC-CCcEEEEEeeccCCCCceEEEEeeeCCCc-c-----cccCCCeeEE
Q 031367 33 LNDVV-FVGSL--------QALGMKLLRTVDKP-EYKYTLAMLGYAEEDQTTVLELTYNYGVT-E-----YTKGNAYAQV 96 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~vLG~~~~~~~~~~-~g~~~~~~l~~~~~~~~~~leL~~~~~~~-~-----~~~g~g~~Hi 96 (161)
++||+ .|+|+ ++|||+........ .+.+..+++..+ ...++|....... . ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 58999 99999 88999997765443 234555677643 4667776432211 1 1234678899
Q ss_pred EEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCC--CCEEEEEe
Q 031367 97 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD--GWKTVLVD 150 (161)
Q Consensus 97 af~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPD--G~~IEl~~ 150 (161)
+|.|+|++++++++ +++|+++..+|...+.+..+.+|+.||| |++|||++
T Consensus 77 ~f~v~d~~~~~~~l----~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARL----KAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHH----HHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 99999999999999 6999999987763333323455556666 99999975
No 40
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.54 E-value=1.9e-13 Score=101.38 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=74.4
Q ss_pred ceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcc-cccCCCeeEEEEEeC
Q 031367 32 PLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTD 101 (161)
Q Consensus 32 ~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~-~~~g~g~~Hiaf~V~ 101 (161)
+++||+ .|+|+ ++|||++..+.. +.+ .|...+. ..+..|+|........ .....++.||||.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~~--~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---DRV--RLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CEE--EEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 479999 99999 899999987653 122 3333221 1246788854321111 112246889999999
Q ss_pred C---HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 102 D---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 102 D---i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
| +++++++| +++|+++. ++... +..+.+||+|||||.|||++..
T Consensus 75 d~~dvd~~~~~L----~~~Gv~~~-~~~~~--~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERL----EALGLPVS-GIVDR--FYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHH----HHCCCCcc-ccccc--ccEEEEEEECCCCcEEEEEECC
Confidence 8 78888888 69999864 33322 2257899999999999999975
No 41
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.54 E-value=2.6e-13 Score=95.35 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=71.7
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 99 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~ 99 (161)
.+.+++|+. .|+|+ ++|||++..+.. .. +|+...+......+.+... ...+..|+||.
T Consensus 3 ~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~~--~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~ 69 (121)
T cd09013 3 DIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----QS--VYLRAWGDYEHHSLKLTES-------PEAGLGHIAWR 69 (121)
T ss_pred CccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----Ce--EEEEeccCCCccEEEEeeC-------CCCceEEEEEE
Confidence 457899999 99999 999999876632 12 3454322112344555311 12468899999
Q ss_pred eCC---HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 100 TDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 100 V~D---i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
|++ +++++++| +++|+++...+.... .++.+||+|||||+|||+...
T Consensus 70 v~~~~~v~~~~~~l----~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 70 ASSPEALERRVAAL----EASGLGIGWIEGDPG--HGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred cCCHHHHHHHHHHH----HHcCCccccccCCCC--CcceEEEECCCCCEEEEEEec
Confidence 984 66777777 699998754333222 246789999999999998753
No 42
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.54 E-value=2.6e-13 Score=98.99 Aligned_cols=107 Identities=14% Similarity=0.232 Sum_probs=74.6
Q ss_pred eEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCCHH
Q 031367 34 NDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 104 (161)
Q Consensus 34 ~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~Di~ 104 (161)
.||. .|+|+ ++|||++..+... ..+|+...+......+.+. . ....+++||||.|+|.+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~--~-----~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVG--P-----ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeec--c-----CCCCceEEEEEECCCHH
Confidence 4899 99999 9999998766421 2356653321112233221 1 12357999999998764
Q ss_pred ---HHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCCchh
Q 031367 105 ---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLK 156 (161)
Q Consensus 105 ---~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~~~ 156 (161)
+++++| +++|+++..+|...+.+..+++||+||||+.|||.......+
T Consensus 69 ~v~~~~~~l----~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~ 119 (141)
T cd07258 69 DIGKALYRI----KAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEFA 119 (141)
T ss_pred HHHHHHHHH----HHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcceec
Confidence 556777 699999988887655444678999999999999998765443
No 43
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.53 E-value=1.7e-13 Score=95.94 Aligned_cols=107 Identities=22% Similarity=0.157 Sum_probs=73.4
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 99 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~ 99 (161)
+..++.|+. .|+|+ ++|||++..... .+ +|+..........+.+. . . ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~--~~~~~~~~~~~~~~~~~-~-~-----~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DR--IYLRGLEEFIHHSLVLT-K-A-----PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----Ce--EEEEecCCCceEEEEEe-e-C-----CCCceeEEEEE
Confidence 357899999 99999 899999865421 22 34432111123334442 1 1 12467899999
Q ss_pred eC---CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 100 TD---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 100 V~---Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
|. |+++++++| +++|+++...|....++..+.+|+.|||||+|||+...
T Consensus 68 v~~~~dv~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 68 VRSEEDLDKAEAFF----QELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CCCHHHHHHHHHHH----HHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 95 678888888 69999987765433333357899999999999999754
No 44
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.53 E-value=4.3e-13 Score=94.65 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=75.1
Q ss_pred ceeEEE-eeCCc--------ccc---CCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcc---cccCCCeeEE
Q 031367 32 PLNDVV-FVGSL--------QAL---GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQV 96 (161)
Q Consensus 32 ~i~Hv~-~V~Dl--------~vL---G~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~---~~~g~g~~Hi 96 (161)
+|+||. .|+|+ ++| ||++..+... .. .|.... ++..++|.......+ ...++++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~---~~--~~~~~~---~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED---GR--SWRAGD---GGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc---Cc--eEEecC---CceEEEEEecccCCCcccccCCcCeeEE
Confidence 589999 99999 889 9999876521 11 222221 246677753322111 1233578899
Q ss_pred EEEeCC---HHHHHHHHhHHHHhcCCeeecCCccc--CCCceEEEEEECCCCCEEEEEec
Q 031367 97 AISTDD---VYKSAEVVNLVTQELGGKITRQPGSI--PGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 97 af~V~D---i~~~~~~L~~~~~~~Gv~i~~~p~~~--~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
||.|+| +++++++| +++|+++...|... .....+.+||+|||||+|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARL----AKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999985 78888888 69999999877642 12236789999999999999864
No 45
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=5.2e-14 Score=109.38 Aligned_cols=111 Identities=41% Similarity=0.641 Sum_probs=93.0
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCC-----------CcEEEEEeeccCCCCceEEEEeeeCCCcccc
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYT 88 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~-----------g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~ 88 (161)
+..+.-|+- .|.|. ++|||++++..+++. ++|+-.|+++++++.++++||++|++...|.
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Ye 93 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYE 93 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcccee
Confidence 345677888 99998 999999999988876 7899999999999999999999999999899
Q ss_pred cCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 89 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 89 ~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
.|++|.||++.++|+-+.++.+. ..|. ... ....+|++|||||.++|.++.
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v~----~p~~--------~~~-g~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKVN----APGG--------KGS-GCGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHhc----CcCC--------ccc-ceEEEEEECCCCcEEEEeccC
Confidence 99999999999999987777773 3222 112 145789999999999999753
No 46
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=5.2e-14 Score=109.37 Aligned_cols=140 Identities=37% Similarity=0.571 Sum_probs=100.2
Q ss_pred CCceEE--EEecCCce---eecCCCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceE
Q 031367 10 NSGSIV--VVIKSAYS---LLFNPKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTV 75 (161)
Q Consensus 10 ~~~~~~--~~~~~~~~---~~~~~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 75 (161)
++|..+ +..||+|+ ++|.+....+..|. +|.|| +.|||++....+ ++..+.|++++ +++.
T Consensus 122 ~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~VgdL~ks~kyw~~~lgM~ilekee----k~t~~~mgYgd--~q~~ 195 (299)
T KOG2943|consen 122 GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNVGDLQKSIKYWEKLLGMKILEKEE----KYTRARMGYGD--EQCV 195 (299)
T ss_pred ccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEehhHHHHHHHHHHHhCcchhhhhh----hhhhhhhccCC--cceE
Confidence 344444 45577775 67888889999999 99999 999999987633 24557899987 4799
Q ss_pred EEEeeeCCCcccccCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcc--cCCC-ceEEEEEECCCCCEEEEEecC
Q 031367 76 LELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGS--IPGL-NTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 76 leL~~~~~~~~~~~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~--~~~~-~~~~~f~~DPDG~~IEl~~~~ 152 (161)
|||+++++...+..+.+...||+-.+|+..+.+.+ |..|.++..+... .|.+ ...++-+.||||+.|+|+..+
T Consensus 196 LElt~~~~~id~~kg~griafaip~d~~~~l~e~i----K~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde 271 (299)
T KOG2943|consen 196 LELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAI----KSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDE 271 (299)
T ss_pred EEEEeccCcccccccceeEEEeccccccccHHHHH----HHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccH
Confidence 99998887665555544444444444666666666 6776666654432 2332 246777999999999999999
Q ss_pred Cchhhhc
Q 031367 153 DFLKEIQ 159 (161)
Q Consensus 153 ~~~~~~~ 159 (161)
.|+++.+
T Consensus 272 ~F~~lsk 278 (299)
T KOG2943|consen 272 GFRKLSK 278 (299)
T ss_pred HHHHHhc
Confidence 9988754
No 47
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.52 E-value=4.7e-13 Score=97.80 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=73.6
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeC
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 101 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~ 101 (161)
.+++|+. .|+|+ ++|||++..... . ...|+..+. ....+.|. . . ..+++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~----~-~~~~l~~~~--~~~~~~l~-~-~-----~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG----D-QMAFLRCNS--DHHSIAIA-R-G-----PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC----C-eEEEEECCC--CcceEEEc-c-C-----CCCceEEEEEECC
Confidence 5799999 99999 999999864421 1 124565443 23445552 1 1 1246789999999
Q ss_pred CHHHHH---HHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 102 DVYKSA---EVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 102 Di~~~~---~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
|++++. ++| +++|+++..+|.....+..+.+||+|||||.|||++..
T Consensus 69 d~~~l~~~~~~l----~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 69 SIDEVMRGIGRM----IDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CHHHHHHHHHHH----HHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 987654 566 69999988776543333356789999999999999874
No 48
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.52 E-value=1.4e-13 Score=93.78 Aligned_cols=104 Identities=19% Similarity=0.087 Sum_probs=73.1
Q ss_pred eeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcc-cccCCCeeEEEEEeCC
Q 031367 33 LNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTDD 102 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~-~~~g~g~~Hiaf~V~D 102 (161)
|+|++ .|+|+ +.|||+...+..... ..+|+..++ ...++|........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 68999 99999 899999876543221 123454433 23577753322211 1123467899999999
Q ss_pred HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEE
Q 031367 103 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 148 (161)
Q Consensus 103 i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl 148 (161)
++++++++ +++|+++..++.. .+ ..+.+||+|||||+|||
T Consensus 75 ~~~~~~~l----~~~g~~~~~~~~~-~~-~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARL----KAAGVPYTESDVP-GD-GVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHH----HHcCCCcccccCC-CC-CccEEEEECCCCCEEeC
Confidence 99999999 6999999877654 22 25789999999999996
No 49
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.52 E-value=1e-12 Score=91.49 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=75.5
Q ss_pred eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCc--ccccCCCeeEEEEEeCCHHHHH
Q 031367 38 FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT--EYTKGNAYAQVAISTDDVYKSA 107 (161)
Q Consensus 38 ~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~--~~~~g~g~~Hiaf~V~Di~~~~ 107 (161)
+|+|+ ++||+++......+.+.+..+++..++ ..+.+....... ....+.+..|++|.|+|+++++
T Consensus 8 ~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 83 (122)
T cd07246 8 IVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSLHLYVEDVDATF 83 (122)
T ss_pred EECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEEEEEeCCHHHHH
Confidence 78888 899999988765455555445555432 456664211110 0012334579999999999999
Q ss_pred HHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 108 EVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 108 ~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
+++ +++|+++..+|...+++ .+.++|+|||||+|||.+.
T Consensus 84 ~~l----~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 84 ARA----VAAGATSVMPPADQFWG-DRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHH----HHCCCeEecCccccccc-ceEEEEECCCCCEEEEecC
Confidence 999 58999999888766664 6899999999999999873
No 50
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.52 E-value=2.1e-13 Score=96.78 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=73.8
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 99 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~ 99 (161)
+..+|.||. .|+|+ ++|||++..+.. . .+|+..++ .+..+.|. . + . .+..|+||.
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~--~~~l~~~~--~~~~i~l~-~-~-----~-~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA----K--ATYFRSDA--RDHTLVYI-E-G-----D-PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----C--eEEEEcCC--ccEEEEEE-e-C-----C-CceEEEEEE
Confidence 457899999 99999 999999865521 1 24555432 23445442 2 1 1 345799999
Q ss_pred eCC---HHHHHHHHhHHHHhcCCeeecCCcccC--CCceEEEEEECCCCCEEEEEecCC
Q 031367 100 TDD---VYKSAEVVNLVTQELGGKITRQPGSIP--GLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 100 V~D---i~~~~~~L~~~~~~~Gv~i~~~p~~~~--~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
|+| +++++++| +++|+++...+.... ++..+++||+|||||+|||+..+.
T Consensus 67 v~~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 67 LRDDDALESAATEL----EQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred ECCHHHHHHHHHHH----HHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeee
Confidence 986 88888888 699999876553211 222467899999999999998754
No 51
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.50 E-value=1e-12 Score=92.25 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=74.2
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCc-ccccCCCeeEEEEEe
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-EYTKGNAYAQVAIST 100 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~-~~~~g~g~~Hiaf~V 100 (161)
++|+|+. .|+|+ ++|||++..... . .+++..++ ....|.|....... ......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~--~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD----S--TAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----C--EEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 5799999 99999 899999976621 2 24555432 24556664322211 112234688999999
Q ss_pred CC---HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCC
Q 031367 101 DD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 101 ~D---i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
++ +++++++| +++|+++.. +...+ ..+.+||+|||||+|||.+..+
T Consensus 73 ~~~~~v~~~~~~l----~~~g~~~~~-~~~~~--~~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRL----IELGIPLVG-ASDHL--VSEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHH----HHcCCceec-ccccc--ceeEEEEECCCCCEEEEEEecC
Confidence 85 77788888 699998754 33222 2478999999999999998644
No 52
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.50 E-value=5.3e-13 Score=93.89 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=71.5
Q ss_pred ceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCC
Q 031367 32 PLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 102 (161)
Q Consensus 32 ~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~D 102 (161)
++.||+ .|+|+ ++|||++..+... . .+|+..++ .+..+.|. . . ...+..|++|.|++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~---~--~~~~~~~~--~~~~~~l~-~-~-----~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPED---G--ALYLRMDD--RAWRIAVH-P-G-----EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCC---C--eEEEEccC--CceEEEEE-e-C-----CCCceeEEEEEECC
Confidence 689999 99999 9999998655321 1 13444332 24445553 1 1 12467899999975
Q ss_pred ---HHHHHHHHhHHHHhcCCeeecCCccc--CCCceEEEEEECCCCCEEEEEecC
Q 031367 103 ---VYKSAEVVNLVTQELGGKITRQPGSI--PGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 103 ---i~~~~~~L~~~~~~~Gv~i~~~p~~~--~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+++++++| +++|+++...|... ..+..+.+||+|||||+|||+...
T Consensus 68 ~~dl~~~~~~l----~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARL----RAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHH----HHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 77888888 69999998755321 222347899999999999998753
No 53
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.50 E-value=1.2e-12 Score=93.36 Aligned_cols=111 Identities=20% Similarity=0.193 Sum_probs=75.1
Q ss_pred ceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCC
Q 031367 32 PLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 102 (161)
Q Consensus 32 ~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~D 102 (161)
+|+|+. .|+|+ ++|||++..+.+. .. .+|+..+. .....+.+............+++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~--~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GG--LVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--Cc--EEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999 99999 8999998766432 12 34555431 12355666433222111223578899999998
Q ss_pred HH---HHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCCc
Q 031367 103 VY---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 154 (161)
Q Consensus 103 i~---~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~ 154 (161)
++ +++++| +++|+++...+.. +..+.+||+|||||+|||++....
T Consensus 76 ~~~v~~~~~~l----~~~G~~~~~~~~~---~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERL----RAAGITPVWPVDH---GNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHH----HHCCCCccccCCC---CceeEEEEECCCCCEEEEEEcCCC
Confidence 65 466777 6899998765421 225789999999999999987543
No 54
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=6.9e-13 Score=92.97 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=71.3
Q ss_pred eeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeC--------C---CcccccCCC
Q 031367 33 LNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY--------G---VTEYTKGNA 92 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~--------~---~~~~~~g~g 92 (161)
+.|+. .|+|+ ++|||++..... .+.|. .+..+ ...+.+.... . ......+.+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYG--ELETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEE--EecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 46999 99999 999999865432 11222 12211 1222221100 0 000112233
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
.|++|.|+|++++++++ +++|+++..+|...+++ .+.++|+|||||.|||.++
T Consensus 73 -~~~~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 -FEIAFVTDDVAAAFARA----VEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred -EEEEEEcCCHHHHHHHH----HHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 59999999999999999 59999999888887775 5788999999999999874
No 55
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.49 E-value=1.3e-12 Score=90.50 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=73.5
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeC
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 101 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~ 101 (161)
++++|+. .|+|+ ++|||++..+.. .. +|+..+. .....+.+... ...+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~--~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GS--VYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----Ce--EEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 5799999 99999 999999986642 12 3444331 12344555321 1245789999998
Q ss_pred ---CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 102 ---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 102 ---Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
|+++++++| +++|+++...|...+++ .+.+||+|||||+||++..
T Consensus 67 ~~~~v~~~~~~l----~~~g~~~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHL----EAAGVAPEEASDPEPGV-GRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCccCCCC-ceEEEEECCCCCEEEEEEc
Confidence 577788888 69999998877544443 5789999999999999875
No 56
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.47 E-value=1.9e-12 Score=90.25 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=71.4
Q ss_pred EEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCc-----ccccCCCeeEEEEEe
Q 031367 35 DVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-----EYTKGNAYAQVAIST 100 (161)
Q Consensus 35 Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~-----~~~~g~g~~Hiaf~V 100 (161)
+.. .|+|+ ++|||++..+.. .+ .++..++ ....|.|....... ....+.+. |++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----WY--VSLRSPD--GGVELAFMLPGHETVPAAQYQFQGQGL-ILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----cE--EEEecCC--CceEEEEccCCCCCCcchhcccCCceE-EEEEEE
Confidence 456 88999 899999976521 22 2343322 13556663211111 11123444 999999
Q ss_pred CCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 101 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 101 ~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
+|+++++++| +++|+++..+|...+++ .+.++|+|||||+|||+|
T Consensus 75 ~did~~~~~l----~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERL----KAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHH----HhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 9999999999 59999998888877764 688999999999999986
No 57
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.46 E-value=1.8e-12 Score=90.88 Aligned_cols=105 Identities=21% Similarity=0.177 Sum_probs=69.6
Q ss_pred eeEEE-eeCCc--------cc---cCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEe
Q 031367 33 LNDVV-FVGSL--------QA---LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 100 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~v---LG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V 100 (161)
++|++ .|+|+ ++ |||++..+. .+ .+ +.| ..++ +...+.|......... ...+..||||.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~~-~~~-~~~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-GA-VGY-GKGG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-ce-eEe-ccCC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 58999 99999 65 799987653 11 22 223 3221 2455666432221111 222346999999
Q ss_pred CC---HHHHHHHHhHHHHhcCCeeecCCcccCC--CceEEEEEECCCCCEEEEE
Q 031367 101 DD---VYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLV 149 (161)
Q Consensus 101 ~D---i~~~~~~L~~~~~~~Gv~i~~~p~~~~~--~~~~~~f~~DPDG~~IEl~ 149 (161)
+| ++++++++ +++|+++..+|...++ ...+.+||+|||||+|||+
T Consensus 73 ~~~~~v~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAA----LAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHH----HHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 97 56667777 6999999888876654 2245799999999999997
No 58
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.44 E-value=3.7e-12 Score=88.65 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=68.5
Q ss_pred cceeEEE-eeCCc-------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCC
Q 031367 31 LPLNDVV-FVGSL-------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 102 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl-------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~D 102 (161)
.+++|+. .|+|+ ..|||++..+.. + . +|+..++ ....+.+. ..+ ..+++.|++|.|+|
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~lGl~~~~~~~--~--~--~~~~~~~--~~~~~~~~-~~~-----~~~~~~~~af~v~~ 67 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTDFGLEVAARTD--D--E--LYYRGYG--TDPFVYVA-RKG-----EKARFVGAAFEAAS 67 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHHcCCEEEEecC--C--e--EEEecCC--CccEEEEc-ccC-----CcCcccEEEEEECC
Confidence 5799999 99999 339999876632 1 1 3444221 12222221 111 12467899999999
Q ss_pred HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 103 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 103 i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
.+++.+.+ ++.|+++...+. .+++ .+.+||+|||||.|||+..
T Consensus 68 ~~~~~~~~----~~~g~~~~~~~~-~~~~-~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 68 RADLEKAA----ALPGASVIDDLE-APGG-GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred HHHHHHHH----HcCCCeeecCCC-CCCC-ceEEEEECCCCCEEEEEec
Confidence 98888877 588998775443 2332 5789999999999999864
No 59
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.44 E-value=1.3e-12 Score=91.52 Aligned_cols=105 Identities=17% Similarity=0.102 Sum_probs=69.1
Q ss_pred eeEEE-eeCCc-------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeC-----CCcccccCCCeeEEEEE
Q 031367 33 LNDVV-FVGSL-------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY-----GVTEYTKGNAYAQVAIS 99 (161)
Q Consensus 33 i~Hv~-~V~Dl-------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~-----~~~~~~~g~g~~Hiaf~ 99 (161)
++||+ .|+|+ +.|||++....... .+ +.+..++ ...+.|.... .....+...+..|++|.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~--~~--~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEADDE--PH--VEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAFL 73 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCcCCC--Cc--EEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEEE
Confidence 58999 99999 66999986443211 11 2232221 2334332110 00001122345689998
Q ss_pred eC---CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEE
Q 031367 100 TD---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 149 (161)
Q Consensus 100 V~---Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~ 149 (161)
+. |+++++++| +++|+++..+|...+++ .+.++|+|||||.|||+
T Consensus 74 ~~~~~dvd~~~~~l----~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 74 CETPAEVDALYAEL----VGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred cCCHHHHHHHHHHH----HHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 76 789999999 69999999888877765 57899999999999997
No 60
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.44 E-value=7.3e-12 Score=100.70 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=73.0
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCC--C-cEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEE
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPE--Y-KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 98 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~--g-~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf 98 (161)
.+|+||+ .|+|+ ++|||++..+...+. + .+..+|+...+ .+..+.+. .. +...+++||||
T Consensus 141 ~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~--~~~~~~l~-~~-----~~~~~~~Hiaf 212 (286)
T TIGR03213 141 QGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNE--RHHSLAFA-AG-----PSEKRLNHLML 212 (286)
T ss_pred ccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECC--CcceEEEe-cC-----CCCCceEEEEE
Confidence 4899999 99999 999999876543221 2 12345665432 23334442 11 12347899999
Q ss_pred EeCCHHH---HHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 99 STDDVYK---SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 99 ~V~Di~~---~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
.|+|+++ ++++| +++|+ ....|...+.+..+++||+||||++||+...
T Consensus 213 ~v~d~~~v~~~~~~l----~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 213 EVDTLDDVGLALDRV----DADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EcCCHHHHHHHHHHH----HHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 9998766 67777 69999 5555543333335789999999999999874
No 61
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.44 E-value=2.3e-12 Score=90.63 Aligned_cols=100 Identities=28% Similarity=0.312 Sum_probs=69.7
Q ss_pred ceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEe--
Q 031367 32 PLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST-- 100 (161)
Q Consensus 32 ~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V-- 100 (161)
+++|+. .|+|+ ++|||++....+ + . .++..+. ..+.+...... ...++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~--~--~~~~~~~----~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K--G--AYLEAGD----LWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C--c--eEEecCC----EEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 589999 99999 999999876542 1 1 2343332 33444322211 1234678999999
Q ss_pred CCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 101 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 101 ~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+|+++++++| +++|+++..++.. ..+.+||+|||||+|||++..
T Consensus 68 ~dl~~~~~~l----~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKL----RQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHH----HHcCCcccCCCCC----CccEEEEECCCCCEEEEEeCC
Confidence 4788888888 6999998755432 146899999999999999863
No 62
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.43 E-value=1.7e-12 Score=89.55 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=66.9
Q ss_pred EEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeC--CH
Q 031367 35 DVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD--DV 103 (161)
Q Consensus 35 Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~--Di 103 (161)
||+ .|+|+ ++|||++..+.+. . +++..+ ...+.+.... .... ...+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~----~--~~~~~~----~~~l~~~~~~-~~~~-~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSK----E--AYFELA----GLWICLMEED-SLQG-PERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCc----e--eEEEec----CeEEEeccCC-CcCC-CCCCccEEEEEcCHHHH
Confidence 899 99999 9999998765421 1 233332 2345443211 1111 2346789999995 68
Q ss_pred HHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 104 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 104 ~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
+++++++ +++|+++...+...++ ..+.+|++|||||+|||++.
T Consensus 69 ~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERL----KALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHH----HHcCCccCCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 8888888 5999998744322222 25789999999999999864
No 63
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.42 E-value=2.2e-12 Score=90.96 Aligned_cols=104 Identities=21% Similarity=0.145 Sum_probs=68.7
Q ss_pred eEEE-eeCCc-------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCC-----ccc--ccCCCeeEEEE
Q 031367 34 NDVV-FVGSL-------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-----TEY--TKGNAYAQVAI 98 (161)
Q Consensus 34 ~Hv~-~V~Dl-------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~-----~~~--~~g~g~~Hiaf 98 (161)
.+++ .|+|+ +.|||+...+..... .. ++..++ ...|.|...... ... +.+.+..|++|
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~~~~~~~--~~--~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f 74 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNPQFSDEK--AA--CMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLISL 74 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEccccCCCC--eE--EEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEEEE
Confidence 5788 99999 569999875433222 21 122222 345666421110 000 12334569999
Q ss_pred EeC---CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 99 STD---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 99 ~V~---Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
.|+ |++++++++ +++|+++..+|...++ .+.+||+|||||+|||+.
T Consensus 75 ~v~~~~~vd~~~~~l----~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 75 SADSREEVDELVEKA----LAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred eCCCHHHHHHHHHHH----HHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 998 477778888 6999999988876654 467899999999999984
No 64
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.41 E-value=5.7e-12 Score=88.44 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=66.5
Q ss_pred eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCCHHHHHHH
Q 031367 38 FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEV 109 (161)
Q Consensus 38 ~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~Di~~~~~~ 109 (161)
.|+|+ + |||++.++... .| +++..+ ...|+|....... ......|++|.|+|+++++++
T Consensus 9 ~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~--~~~~~~----~~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~~~~~ 75 (120)
T cd08350 9 PSRDLDATEAFYAR-LGFSVGYRQAA---GY--MILRRG----DLELHFFAHPDLD---PATSPFGCCLRLPDVAALHAE 75 (120)
T ss_pred EcCCHHHHHHHHHH-cCCEEEecCCC---CE--EEEEcC----CEEEEEEecCcCC---CCCCcceEEEEeCCHHHHHHH
Confidence 78888 7 99999766432 23 345533 3567775322111 112235899999999999999
Q ss_pred HhHHHHhcCCeee-------cCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 110 VNLVTQELGGKIT-------RQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 110 L~~~~~~~Gv~i~-------~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
| +++|+++. .+|...+++ .+.+||+|||||+|||.|.
T Consensus 76 l----~~~G~~~~~~~~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 76 F----RAAGLPETGSGIPRITPPEDQPWG-MREFALVDPDGNLLRFGQP 119 (120)
T ss_pred H----HHhCccccccCCCcccCCcCCCCc-eeEEEEECCCCCEEEeecC
Confidence 9 59999853 344444454 6899999999999999885
No 65
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.41 E-value=7.3e-12 Score=87.24 Aligned_cols=103 Identities=26% Similarity=0.324 Sum_probs=71.3
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeC
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 101 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~ 101 (161)
.+|+|+. .|+|+ ++|||+...+.. .+ +++..++. ....+.+.. . ..++..|++|.|+
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~~-~~~~~~~~~--~-----~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GI--VYLRATGS-EHHILRLRR--S-----DRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CE--EEEECCCC-ccEEEEecc--C-----CCCCCceEEEEeC
Confidence 5799999 99999 899999865532 22 34443221 123334321 1 1235689999995
Q ss_pred ---CHHHHHHHHhHHHHhcCCeeecCCccc--CCCceEEEEEECCCCCEEEEEecC
Q 031367 102 ---DVYKSAEVVNLVTQELGGKITRQPGSI--PGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 102 ---Di~~~~~~L~~~~~~~Gv~i~~~p~~~--~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
|+++++++| +++|+++..+|... +++ .+.+||+|||||.|||++..
T Consensus 68 ~~~~l~~~~~~l----~~~G~~~~~~~~~~~~~~~-~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQV----AARGGTVLSEPGATDDPGG-GYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHH----HHcCCceecCCcccCCCCC-ceEEEEECCCCCEEEEEecc
Confidence 677888888 69999998776432 332 57899999999999999864
No 66
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.40 E-value=9.2e-12 Score=86.73 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=70.3
Q ss_pred eeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCc------ccccCCCeeEEE
Q 031367 33 LNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT------EYTKGNAYAQVA 97 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~------~~~~g~g~~Hia 97 (161)
+-||. .|+|+ ++|||++..+. ++.+ +++..++ ...+.|....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~~~--~~l~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DRRL--AFFWVGG---RGMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CCce--EEEEcCC---CcEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 35888 99999 89999998752 2223 3455443 2345443221110 011224678999
Q ss_pred EEeC--CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 98 ISTD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 98 f~V~--Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
|.|+ |++++++++ +++|+++...+. ..+ ..+.+||+|||||+|||++.
T Consensus 73 ~~v~~~dl~~~~~~l----~~~g~~~~~~~~-~~~-~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHL----EAKGVAIESEVQ-WPR-GGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHH----HhcCCceecccc-CCC-CeeEEEEECCCCCEEEEecC
Confidence 9995 788999999 599999876554 222 36789999999999999863
No 67
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.40 E-value=1.1e-11 Score=85.55 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=68.0
Q ss_pred eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCCHHHHHHH
Q 031367 38 FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEV 109 (161)
Q Consensus 38 ~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~Di~~~~~~ 109 (161)
.|+|+ ++|||+.... .+ +. .++..++ .....+.+.. ... .+....|++|.|+|+++++++
T Consensus 7 ~v~Dl~~s~~FY~~~lG~~~~~~----~~-~~-~~~~~~~-~~~~~~~~~~-~~~----~~~~~~~i~~~v~d~~~~~~~ 74 (112)
T cd07238 7 PVADPEAAAAFYADVLGLDVVMD----HG-WI-ATFASPQ-NMTVQVSLAT-EGG----TATVVPDLSIEVDDVDAALAR 74 (112)
T ss_pred ecCCHHHHHHHHHHhcCceEEEc----CC-ce-EEEeecC-CCCcEEEEec-CCC----CCCCCCEEEEEeCCHHHHHHH
Confidence 78888 8899998643 11 22 2333222 1234455532 111 122356999999999999999
Q ss_pred HhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 110 VNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 110 L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
| +++|+++..+|...+++ .+.+||+|||||+|||+++
T Consensus 75 l----~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 75 A----VAAGFAIVYGPTDEPWG-VRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred H----HhcCCeEecCCccCCCc-eEEEEEECCCCCEEEEEEc
Confidence 9 69999999888766654 5789999999999999975
No 68
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.39 E-value=1.1e-11 Score=83.26 Aligned_cols=103 Identities=27% Similarity=0.323 Sum_probs=73.3
Q ss_pred EEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCCHHH
Q 031367 35 DVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 105 (161)
Q Consensus 35 Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~Di~~ 105 (161)
|+. .|+|+ +.|||++....... ....+++..+ ...++|....+......+++..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~--~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNG--GAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccC--CEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 788 89999 78999998776432 2344555543 366777543222111124567899999999999
Q ss_pred HHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEE
Q 031367 106 SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 148 (161)
Q Consensus 106 ~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl 148 (161)
++++| +++|+.+..++....+ ..+.+|++||+|++|||
T Consensus 75 ~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERL----KAAGVEVLGEPREEPW-GGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHH----HHcCCcccCCCcCCCC-CcEEEEEECCCCcEEeC
Confidence 99999 5899998877652222 36899999999999996
No 69
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.38 E-value=1.3e-11 Score=84.67 Aligned_cols=99 Identities=22% Similarity=0.186 Sum_probs=68.8
Q ss_pred eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCCHHHHHHH
Q 031367 38 FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEV 109 (161)
Q Consensus 38 ~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~Di~~~~~~ 109 (161)
.|+|+ ++|||++..+.. ...+ +++..+ ...+.|......... ...+..|++|.|+|+++++++
T Consensus 5 ~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 75 (112)
T cd08349 5 PVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALYAE 75 (112)
T ss_pred EECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHHHH
Confidence 57777 889999987653 1223 445532 356666432221111 223456999999999999999
Q ss_pred HhHHHHhcCCe-eecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 110 VNLVTQELGGK-ITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 110 L~~~~~~~Gv~-i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
+ +++|++ +..++...+++ .+.+||+|||||+|||+|
T Consensus 76 l----~~~G~~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 76 L----KAKGADLIVYPPEDQPWG-MREFAVRDPDGNLLRFGE 112 (112)
T ss_pred H----HHcCCcceecCccCCCcc-cEEEEEECCCCCEEEecC
Confidence 9 599998 66666655553 578999999999999986
No 70
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.38 E-value=7.4e-12 Score=85.54 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=65.2
Q ss_pred eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCCHHHHHHH
Q 031367 38 FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEV 109 (161)
Q Consensus 38 ~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~Di~~~~~~ 109 (161)
.|+|+ ++|||++..+.. .+.. +..+..-......+..... . .....+..|++|.|+|+++++++
T Consensus 2 ~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~v~dv~~~~~~ 73 (108)
T PF12681_consen 2 PVSDLEAAAAFYEDVLGFEVVFDDP----DYVD--FSLGFRFHDGVIEFLQFPD-P-PGPPGGGFHLCFEVEDVDALYER 73 (108)
T ss_dssp EESSHHHHHHHHHHTTTSEEEEEET----SEEE--EEETEEEEEEEEEEEEEES-S-SSSSSSEEEEEEEESHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCEEEEeCC----CeEE--EEeccchhhhhHHHccCCc-c-ccCCCceeEEEEEEcCHHHHHHH
Confidence 36777 789999998432 2222 2221100011223322111 1 11234678999999999999999
Q ss_pred HhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEE
Q 031367 110 VNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 149 (161)
Q Consensus 110 L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~ 149 (161)
+ +++|+++..+|...+++ .+.++|+|||||+|||+
T Consensus 74 l----~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 74 L----KELGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp H----HHTTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred H----HHCCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 9 59999999988887774 68999999999999986
No 71
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.35 E-value=1.3e-11 Score=86.32 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=65.4
Q ss_pred EEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCc----cc-ccCCCeeEEE--E
Q 031367 35 DVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT----EY-TKGNAYAQVA--I 98 (161)
Q Consensus 35 Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~----~~-~~g~g~~Hia--f 98 (161)
||+ .|+|+ ++|||++..... .+ +++...+ ....+.+....... .. ....+..|++ |
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--ccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 999 99999 899999865421 12 2233221 12333332111000 00 1112346765 5
Q ss_pred EeCCHHHHHHHHhHHHHhcCCeeecCCcccCC---CceEEEEEECCCCCEEEEEe
Q 031367 99 STDDVYKSAEVVNLVTQELGGKITRQPGSIPG---LNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 99 ~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~---~~~~~~f~~DPDG~~IEl~~ 150 (161)
.++|+++++++| +++|+++..+|..... +..+.+||+|||||.|||..
T Consensus 74 ~~~dv~~~~~~l----~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERL----EAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHH----HHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 668999999999 6999999987764211 22578999999999999985
No 72
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.34 E-value=1.7e-11 Score=99.11 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=73.2
Q ss_pred CcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEe
Q 031367 30 DLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 100 (161)
Q Consensus 30 ~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V 100 (161)
+++++|++ .|+|+ ++|||++..+... . +++.......+..+.+.. . ...+..|+||.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~--~-----~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ-----R-VYLKAWDEWDHYSVILTE--A-----DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc-----e-EEEEeccccccceEeecc--C-----CCCceeEEEEEe
Confidence 46899999 99999 8999998765421 1 233321111123344421 1 124688999999
Q ss_pred C---CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCC
Q 031367 101 D---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 101 ~---Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
+ |+++++++| +++|+++...|.....+.++.+||+|||||.|||++...
T Consensus 69 ~~~~dl~~~~~~l----~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 69 ESEADLERLVKRL----EAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred CCHHHHHHHHHHH----HHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 8 677888888 699999876654222223578999999999999998654
No 73
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.34 E-value=3.9e-11 Score=83.87 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=67.7
Q ss_pred eEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCC--
Q 031367 34 NDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD-- 102 (161)
Q Consensus 34 ~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~D-- 102 (161)
-|+. .|+|+ ++|||+...+.+ .+. .|...+ ....+.+. ..... ..++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~~~-~~~~~~---~~~~~~~~--~~~~~--~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----DYA-KFLLED---PRLNFVLN--ERPGA--PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----Cee-EEEecC---CceEEEEe--cCCCC--CCCCeeEEEEEeCCHH
Confidence 4899 99999 999998765531 121 232211 12333332 11111 11467899999998
Q ss_pred -HHHHHHHHhHHHHhcCCeeecCCcccCC-CceEEEEEECCCCCEEEEEecC
Q 031367 103 -VYKSAEVVNLVTQELGGKITRQPGSIPG-LNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 103 -i~~~~~~L~~~~~~~Gv~i~~~p~~~~~-~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+++++++| +++|+++..+|..... +..+.+||+|||||+|||++..
T Consensus 71 dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARA----EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHH----HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 67777887 6999998876643321 2246899999999999999853
No 74
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.33 E-value=3.1e-11 Score=83.75 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=65.8
Q ss_pred cceeEEE-eeCCc-------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeE--EEEEe
Q 031367 31 LPLNDVV-FVGSL-------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQ--VAIST 100 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl-------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~H--iaf~V 100 (161)
.+|+||+ .|+|+ +.|||++..+.+ .. .+...+. ....+.+. . .. ..+..| ++|.+
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~~lG~~~~~~~~----~~--~~~~~~~--~~~~~~~~-~-~~-----~~~~~~~~~~~~~ 65 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYEAFGLDVREEGD----GL--ELRTAGN--DHRWARLL-E-GA-----RKRLAYLSFGIFE 65 (112)
T ss_pred CceeEEEEecCCHHHHHHHHHHhCCcEEeecC----ce--EEEecCC--CceEEEee-c-CC-----CCceeeEEEEeEh
Confidence 3689999 99999 779999975531 12 2333221 23334442 1 11 122334 55566
Q ss_pred CCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 101 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 101 ~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
+|+++++++| +++|+++..+|. +++ .+.+||+|||||+|||...
T Consensus 66 ~d~~~~~~~l----~~~Gi~~~~~~~--~~~-~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 66 DDFAAFARHL----EAAGVALAAAPP--GAD-PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhHHHHHHHH----HHcCCceecCCC--cCC-CCEEEEECCCCCEEEEecC
Confidence 8999999999 599999886652 232 4579999999999999864
No 75
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.32 E-value=4e-11 Score=96.42 Aligned_cols=104 Identities=24% Similarity=0.248 Sum_probs=72.4
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 99 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~ 99 (161)
++.+++|+. .|+|+ ++|||++..+.. .+ +|+..........+.|... ...+..|+||.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~~--~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----EY--IYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----Ce--EEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 357899999 99999 999999876532 12 3343211111233444321 12467899999
Q ss_pred eC---CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 100 TD---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 100 V~---Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
|+ |+++++++| +++|+++...+.. + ..+.+||+|||||.|||++..
T Consensus 68 v~~~~dl~~~~~~l----~~~Gv~v~~~~~~--~-~~~~~~~~DPdG~~iEl~~~~ 116 (294)
T TIGR02295 68 VSKEEDLDKAADFF----QKLGHPVRLVRDG--G-QPEALRVEDPFGYPIEFYFEM 116 (294)
T ss_pred eCCHHHHHHHHHHH----HhcCCcEEeecCC--C-CceEEEEECCCCCEEEEEEch
Confidence 98 677888888 6999998865432 2 258899999999999999854
No 76
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.30 E-value=3.7e-11 Score=83.44 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=67.4
Q ss_pred eEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcc--cccCCCeeEEEEEeCC
Q 031367 34 NDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAISTDD 102 (161)
Q Consensus 34 ~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~--~~~g~g~~Hiaf~V~D 102 (161)
+||+ .|+|+ ++||+....+...+..+.+.+++..++ ....|||+.+....+ ...+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~--~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGD--GPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETT--ETEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCC--CcEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 6999 99999 889999877766666667777777654 237899987555432 1356799999999999
Q ss_pred HHHHHHHHhHHHHhcCCeeecCC
Q 031367 103 VYKSAEVVNLVTQELGGKITRQP 125 (161)
Q Consensus 103 i~~~~~~L~~~~~~~Gv~i~~~p 125 (161)
+++++++| +++|+++...+
T Consensus 79 ~d~~~~~l----~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARL----EAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHH----HHTTECEEECE
T ss_pred HHHHHHHH----HHCCCEEcccC
Confidence 99999999 59999988764
No 77
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.30 E-value=4e-11 Score=82.94 Aligned_cols=100 Identities=20% Similarity=0.181 Sum_probs=67.2
Q ss_pred EE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCccc-ccCCCeeEEEEEeCC---
Q 031367 36 VV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEY-TKGNAYAQVAISTDD--- 102 (161)
Q Consensus 36 v~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~-~~g~g~~Hiaf~V~D--- 102 (161)
+. .|+|+ ++|||++.... ..+. ++..++ ...+.|......... ....+..|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFA--LFVLGS---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceE--EEEeCC---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 45 78888 89999986542 1232 233222 345666432221111 122356799999986
Q ss_pred HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 103 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 103 i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
++++++++ +++|+++..+|...+++ +.++|+|||||+|||+.
T Consensus 73 ~~~~~~~~----~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEW----QAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHH----HHCCCeEecCccccCCc--cEEEEECCCCCEEEeeC
Confidence 67777777 69999999888877664 67899999999999974
No 78
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.26 E-value=7.5e-11 Score=94.82 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=71.5
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeC
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 101 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~ 101 (161)
.++.|++ .|+|+ ++|||++..+.. .+. .|+..+. .+..+.|. ..+ ..++.|++|.|+
T Consensus 2 ~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~~---~~~~~~~--~~~~~~l~-~~~------~~~~~~~~f~V~ 67 (286)
T TIGR03213 2 RGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--NDA---LYLRLDS--RAHRIAVH-PGE------SDDLAYAGWEVA 67 (286)
T ss_pred ceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cce---EEEEcCC--CceEEEEE-ECC------cCCeeeEeeeeC
Confidence 5799999 99999 999999864421 121 2444432 23444442 211 135789999999
Q ss_pred C---HHHHHHHHhHHHHhcCCeeecCCccc--CCCceEEEEEECCCCCEEEEEecC
Q 031367 102 D---VYKSAEVVNLVTQELGGKITRQPGSI--PGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 102 D---i~~~~~~L~~~~~~~Gv~i~~~p~~~--~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
| ++++.++| +++|+++...|... ..+..+.+||+|||||.|||+...
T Consensus 68 ~~~~l~~~~~~L----~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 68 DEAGLDQVKEKL----EKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred CHHHHHHHHHHH----HHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcc
Confidence 8 67777787 69999988766421 122257899999999999999753
No 79
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.24 E-value=1.3e-10 Score=81.06 Aligned_cols=94 Identities=20% Similarity=0.173 Sum_probs=63.1
Q ss_pred eeCCc-------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEeCCHHHHHHHH
Q 031367 38 FVGSL-------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVV 110 (161)
Q Consensus 38 ~V~Dl-------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V~Di~~~~~~L 110 (161)
.|+|+ +.|||++.++. + .+ +++..+ ...+.|.. ..... .. ...|++|.|+|+++++++|
T Consensus 8 ~v~Dl~~s~~FY~~LGf~~~~~~--~--~~--~~l~~~----~~~l~l~~-~~~~~--~~-~~~~~~~~v~did~~~~~l 73 (113)
T cd08356 8 PAKDFAESKQFYQALGFELEWEN--D--NL--AYFRLG----NCAFYLQD-YYVKD--WA-ENSMLHLEVDDLEAYYEHI 73 (113)
T ss_pred ccccHHHHHHHHHHhCCeeEecC--C--CE--EEEEcC----CEEEEeec-CCCcc--cc-cCCEEEEEECCHHHHHHHH
Confidence 67788 45999997763 1 23 455543 23454432 11111 11 2358999999999999999
Q ss_pred hHHHHhcCCeee-----cCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 111 NLVTQELGGKIT-----RQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 111 ~~~~~~~Gv~i~-----~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
+++|+++. .+|...+++ .+.++|+|||||+|+|.+
T Consensus 74 ----~~~G~~~~~~~~~~~~~~~~~g-~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 74 ----KALGLPKKFPGVKLPPITQPWW-GREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred ----HHcCCcccccceecCccccCCC-cEEEEEECCCccEEEeeC
Confidence 69999754 234444454 689999999999999975
No 80
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.20 E-value=3.2e-10 Score=78.61 Aligned_cols=101 Identities=20% Similarity=0.138 Sum_probs=66.7
Q ss_pred EE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCC------cccccCCCeeEEEEEe
Q 031367 36 VV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV------TEYTKGNAYAQVAIST 100 (161)
Q Consensus 36 v~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~------~~~~~g~g~~Hiaf~V 100 (161)
|. .|+|+ ++|||++..+. ...+ .++..+ ...++|...... .....+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDGV--AFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCce--EEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 56 78888 89999987662 1123 345543 355666422110 0011112234566665
Q ss_pred ---CCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 101 ---DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 101 ---~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
+|++++++++ ++.|+++..+|...+++ ++.+||+|||||+|||..
T Consensus 73 ~~~~d~~~~~~~l----~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARA----AAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHH----HhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEee
Confidence 5788888888 59999998887766654 688999999999999975
No 81
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=98.96 E-value=6.5e-09 Score=79.50 Aligned_cols=90 Identities=19% Similarity=0.307 Sum_probs=65.7
Q ss_pred cceeEEE-eeC--Cc--------cccCCEEEEEEeCCC--CcEEEEEeeccCCCCceEEEEeeeCCC-c--------ccc
Q 031367 31 LPLNDVV-FVG--SL--------QALGMKLLRTVDKPE--YKYTLAMLGYAEEDQTTVLELTYNYGV-T--------EYT 88 (161)
Q Consensus 31 ~~i~Hv~-~V~--Dl--------~vLG~~~~~~~~~~~--g~~~~~~l~~~~~~~~~~leL~~~~~~-~--------~~~ 88 (161)
.+++||+ .|+ |+ ++|||+..++...++ ......++..+. +...++|..+... . ...
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHh
Confidence 4699999 999 99 999999988765433 334445565443 3577878533221 1 112
Q ss_pred cCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCc
Q 031367 89 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 126 (161)
Q Consensus 89 ~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~ 126 (161)
.+.|++||||.|+|+++++++| +++|+++...|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L----~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAAL----RARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHH----HHcCCeeccCch
Confidence 3678999999999999999999 699999987763
No 82
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.76 E-value=1.4e-07 Score=74.92 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=74.8
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCc-ccccCCCeeEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-EYTKGNAYAQVAI 98 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~-~~~~g~g~~Hiaf 98 (161)
+.+.+.-+. .|+|+ ++||+++..+... .+-++.++ ...|.|...+... +.+...|.-|+||
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~Af 77 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTAF 77 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCC---EEEEEEEeCCCCCCCCccccceeeeee
Confidence 457889999 99999 9999999877532 13455553 3556664333222 1234457889999
Q ss_pred EeCCH---HHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCC
Q 031367 99 STDDV---YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 99 ~V~Di---~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
.+++. .+.+.++ ...|+++. ++. ++.....+||.||+||-||+....+
T Consensus 78 LlP~r~~L~~~l~hl----~~~~~~l~-Ga~--DH~vSEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 78 LLPTREDLARVLNHL----AEEGIPLV-GAS--DHLVSEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred ecCCHHHHHHHHHHH----HhcCCccc-ccC--cchhheeeeecCCCCCeEEEEecCC
Confidence 99975 4445555 68888876 222 2333568999999999999998643
No 83
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=98.74 E-value=4.5e-07 Score=65.06 Aligned_cols=111 Identities=22% Similarity=0.229 Sum_probs=76.5
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccC-CCCceEEEEeeeCCCcccccCCCeeEEEE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAE-EDQTTVLELTYNYGVTEYTKGNAYAQVAI 98 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~leL~~~~~~~~~~~g~g~~Hiaf 98 (161)
+...+.|.- .|+|+ ++||++........ ....+.+.... ..... + ... . ....+.+..++-|
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~--~~~y~~f~~~~~~~gG~-l--~~~--~-~~~p~~~~~~iy~ 77 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMG--EMRYAVFPADGAGAGGG-L--MAR--P-GSPPGGGGWVIYF 77 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccCC--CceEEEEECCCccccce-e--ccC--C-cCCCCCCCEEEEE
Confidence 445688888 99999 99999997664332 23333333222 11111 1 111 1 1122133458999
Q ss_pred EeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 99 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 99 ~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
.|+|++++.+|. +++|.+++.++...|++ ++++.|.||+||+|-|.+..
T Consensus 78 ~v~did~~l~rv----~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 78 AVDDIDATLERV----VAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred ecCChHHHHHHH----HhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 999999999999 59999999999988864 78999999999999998753
No 84
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.62 E-value=2.1e-07 Score=77.32 Aligned_cols=91 Identities=15% Similarity=0.305 Sum_probs=63.5
Q ss_pred CCcceeEEE-eeC--Cc--------cccCCEEEEEEeCCC--CcEEEEEeeccCCCCceEEEEeeeCCC---c------c
Q 031367 29 KDLPLNDVV-FVG--SL--------QALGMKLLRTVDKPE--YKYTLAMLGYAEEDQTTVLELTYNYGV---T------E 86 (161)
Q Consensus 29 ~~~~i~Hv~-~V~--Dl--------~vLG~~~~~~~~~~~--g~~~~~~l~~~~~~~~~~leL~~~~~~---~------~ 86 (161)
...+++||+ .|+ |+ ++|||+..++..... ..+....+..+. +...|+|..+... . .
T Consensus 155 ~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~--g~~~i~L~ep~~~~~~s~i~~fl~ 232 (353)
T TIGR01263 155 GLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPD--GKVKIPLNEPASGKDKSQIEEFLE 232 (353)
T ss_pred CeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCC--CcEEEEEeccCCCCCCCHHHHHHH
Confidence 456799999 999 88 899999987765422 122212233222 3577888642111 1 1
Q ss_pred cccCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCC
Q 031367 87 YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 125 (161)
Q Consensus 87 ~~~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p 125 (161)
...+.|++||||.|+|+++++++| +++|+++...|
T Consensus 233 ~~~g~Gv~HiAf~vdDi~~~~~~l----~~~Gv~~l~~P 267 (353)
T TIGR01263 233 FYNGAGVQHIALNTDDIVRTVRAL----RARGVEFLDTP 267 (353)
T ss_pred HcCCCCccEEEEEcCCHHHHHHHH----HHcCCccCcCC
Confidence 123679999999999999999999 59999999876
No 85
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.59 E-value=2.3e-06 Score=71.10 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=73.0
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcc----c--ccCCCeeE
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE----Y--TKGNAYAQ 95 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~----~--~~g~g~~H 95 (161)
++++|+. .|+|+ +.|||+..++.....+... +.+..+ ...++|........ + .++.+..|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~-~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKAS-HVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCceeE-EEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEE
Confidence 4689999 99999 8999999877322222222 223322 46788864322211 1 25678999
Q ss_pred EEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 96 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 96 iaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
|||.|+|++++++++ +++|+++..+|.....+..+..-++-++|..+=|+++
T Consensus 76 iaf~V~Dv~~a~~~l----~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~ 127 (353)
T TIGR01263 76 VAFRVDDAAAAFEAA----VERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDR 127 (353)
T ss_pred EEEEECCHHHHHHHH----HHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcC
Confidence 999999999999999 5999999887764311112333345556666666654
No 86
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.58 E-value=1.9e-06 Score=61.22 Aligned_cols=51 Identities=12% Similarity=-0.010 Sum_probs=41.0
Q ss_pred eeEEEEEeCC---HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEE
Q 031367 93 YAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 149 (161)
Q Consensus 93 ~~Hiaf~V~D---i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~ 149 (161)
..++++.|+| +++++++| ++|.++..+|...+++ .++++|+||+|+.|+|.
T Consensus 75 ~~~l~i~~~~~e~v~~~~~~l-----~~~g~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 75 GISLSVECDSEEEADRLFEAL-----SEGGTVLMPLQKTFWS-PLFGWVTDRFGVSWQIN 128 (128)
T ss_pred CEEEEEECCCHHHHHHHHHHH-----hcCCeEeccchhcCcc-cccEEEECCCCCEEEeC
Confidence 3589999987 66777777 3455888888888876 68899999999999983
No 87
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.56 E-value=3.6e-07 Score=62.66 Aligned_cols=113 Identities=20% Similarity=0.216 Sum_probs=63.6
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCc---EEEEEeeccCCCCceEEE--------EeeeCCCc-cccc
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYK---YTLAMLGYAEEDQTTVLE--------LTYNYGVT-EYTK 89 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~---~~~~~l~~~~~~~~~~le--------L~~~~~~~-~~~~ 89 (161)
++++||+ .|+|+ ++|||+...+....... ....+............. ........ ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 4689999 99999 89999998876543221 112222211000000000 00000000 0111
Q ss_pred C-CCeeEEEEEeCC---HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 90 G-NAYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 90 g-~g~~Hiaf~V~D---i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
+ .+..|+++.+++ ..+..... ...|..+...+. ..+ ...+||+||||++|||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFL----DPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEee----CCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 1 246799999999 44444444 467888665443 222 238999999999999974
No 88
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.34 E-value=2e-06 Score=72.63 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=64.8
Q ss_pred CcceeEEE-eeCCc--------cccCCEEEEEEeCCC-----CcEEEEEeeccCCCCceEEEEeeeCCC---c-------
Q 031367 30 DLPLNDVV-FVGSL--------QALGMKLLRTVDKPE-----YKYTLAMLGYAEEDQTTVLELTYNYGV---T------- 85 (161)
Q Consensus 30 ~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~-----g~~~~~~l~~~~~~~~~~leL~~~~~~---~------- 85 (161)
..+|+|++ .|+|| ++|||+..+..+.+. .+.....+..+. +...++|..+... .
T Consensus 178 l~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v~ipLnEP~~~~~~~SqI~eFL 255 (398)
T PLN02875 178 LRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMVLLPLNEPTFGTKRKSQIQTYL 255 (398)
T ss_pred cceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcEEEEeccCCCCCCCcChHHHHH
Confidence 46899999 99999 899999987654321 123445566443 3577888543211 1
Q ss_pred ccccCCCeeEEEEEeCCHHHHHHHHhHHHHhc----CCeeecCC
Q 031367 86 EYTKGNAYAQVAISTDDVYKSAEVVNLVTQEL----GGKITRQP 125 (161)
Q Consensus 86 ~~~~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~----Gv~i~~~p 125 (161)
....|.|++||||.|+|+.+++++| +++ |+++...|
T Consensus 256 ~~~~G~GIQHIAl~tdDI~~av~~L----ra~~~~~Gv~fL~~P 295 (398)
T PLN02875 256 EHNEGPGLQHLALKSDDIFGTLREM----RARSHIGGFEFMPPP 295 (398)
T ss_pred HhcCCCCeeEEEeecCCHHHHHHHH----HhccccCCeecCCCC
Confidence 1234679999999999999999999 587 99999854
No 89
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.15 E-value=2.5e-05 Score=54.93 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=69.2
Q ss_pred cceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEee-ccCCCCceEEEEeeeCCCc---ccc-cCCCeeEE
Q 031367 31 LPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLG-YAEEDQTTVLELTYNYGVT---EYT-KGNAYAQV 96 (161)
Q Consensus 31 ~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~leL~~~~~~~---~~~-~g~g~~Hi 96 (161)
+.+-|.+ -|+|| ++||.++-++-+ .| +-++ ++. +....|....... ... .+--..|+
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd----~w--vdfDfyGH---Q~v~Hl~~q~~~~~~g~V~~~~v~~pHf 73 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD----TW--VDFDFYGH---QVVAHLTPQPDSQGSGKVDGHGVPPPHF 73 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccc----eE--EEeeeccc---EEEEEecCCcccccCcccCCCCCCCccc
Confidence 4567999 99999 999998865432 12 2222 222 4566664222111 111 11123454
Q ss_pred --EEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCC---CceEEEEEECCCCCEEEEEec
Q 031367 97 --AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG---LNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 97 --af~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~---~~~~~~f~~DPDG~~IEl~~~ 151 (161)
.|.++|-.+..+||+ ++|+++..+|...-. +..+.+|+.||.||.||+-..
T Consensus 74 GvVl~~edW~alaerle----a~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 74 GVVLPVEDWFALAERLE----AAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred eEEEEHHHHHHHHHHHH----HcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 456678889999995 999999888864322 236889999999999999653
No 90
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=0.00015 Score=52.76 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=67.2
Q ss_pred cccCCEEEEEEeCCC----------CcEEEEEeeccCCCCceEEEEeeeCCCcccccCC-CeeEEEEEeCCHHHHHHHHh
Q 031367 43 QALGMKLLRTVDKPE----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGN-AYAQVAISTDDVYKSAEVVN 111 (161)
Q Consensus 43 ~vLG~~~~~~~~~~~----------g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~-g~~Hiaf~V~Di~~~~~~L~ 111 (161)
++||.++..+...++ +..--+-|..+ ...|-+.-..+......++ ...-|-+.++|+++.++++
T Consensus 21 ~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~l~~~~~d~da~f~~a- 95 (136)
T COG2764 21 EVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLSLDLYVEDVDAVFERA- 95 (136)
T ss_pred HHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEEEEEEehHHHHHHHHH-
Confidence 899999988877665 23222222222 1223221111111112222 2346777888899999999
Q ss_pred HHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 112 LVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 112 ~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
.+.|++++.++..+.|+ .++.-|+||.|+.|-|....
T Consensus 96 ---~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 96 ---AAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred ---HhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCc
Confidence 59999999999999997 78899999999999998764
No 91
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=97.90 E-value=0.00013 Score=51.98 Aligned_cols=110 Identities=20% Similarity=0.141 Sum_probs=65.7
Q ss_pred eeEEE-eeCCc-------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCc-----c--cccCCCeeEEE
Q 031367 33 LNDVV-FVGSL-------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-----E--YTKGNAYAQVA 97 (161)
Q Consensus 33 i~Hv~-~V~Dl-------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~-----~--~~~g~g~~Hia 97 (161)
.-.|+ -|+|| ..|||+......... .. .++-.+ ...+-|+...--. + -...+.-.-||
T Consensus 4 mIFvNLPVkDL~~S~~Fy~alGfk~Npq~sde~--a~-~mi~~~----ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ 76 (133)
T COG3607 4 MIFVNLPVKDLEASKAFYTALGFKFNPQFSDED--AA-CMIISD----NIFVMLLEEARFQTFTKRQIADTTKSREVLIS 76 (133)
T ss_pred EEEEecchhhHHHHHHHHHHhCcccCCCccccc--ce-eEEEec----cEEEEEeccHHhhhhcccccccccCCceEEEE
Confidence 44678 89999 899999965543322 11 222211 3445554211100 0 01223445799
Q ss_pred EEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 98 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 98 f~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+++.+-++ ++.+...+++.|.+...+|.+ .+..+..-|.|||||.||+....
T Consensus 77 ls~~s~ee-vd~~v~ka~eaGGk~~~~~~d--~gfMYg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 77 LSAGSREE-VDELVDKALEAGGKPANEPQD--EGFMYGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred eccCcHHH-HHHHHHHHHHcCCCCCCCccc--cccccceeeeCCCCCeEEEEEeC
Confidence 99986532 333333347999998777764 33356677999999999998753
No 92
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.79 E-value=0.00045 Score=51.71 Aligned_cols=111 Identities=21% Similarity=0.213 Sum_probs=59.2
Q ss_pred eeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcc---c---------ccCC
Q 031367 33 LNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---Y---------TKGN 91 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~---~---------~~g~ 91 (161)
|+|+. .|+|+ +.|||.+......+..+..-..+-.++ . .|||+...+... . ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCcccccccccceechhhcCCC
Confidence 79999 99999 788999998887776444433344443 3 899986322111 0 1356
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCc--eEEEEEECC----CCCEEEEEecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLN--TKITSFVDP----DGWKTVLVDNE 152 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~--~~~~f~~DP----DG~~IEl~~~~ 152 (161)
|+.++||+++|+++..++| ++.|+... .+...++.. -+.+++.|+ .+..=++++..
T Consensus 77 g~~~~~l~t~d~~~~~~~l----~~~G~~~~-~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~ 138 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARL----RAAGLDAG-SRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWE 138 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHH----HTTT-EEE-EEEEEEE-EEEEEEEEEE-SS---SS---EEEEES
T ss_pred CeEEEEEecCCHHHHHHHH----HhcCCCCC-CcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeC
Confidence 8899999999999999999 58998621 111111211 245677775 25667777553
No 93
>PRK10148 hypothetical protein; Provisional
Probab=97.35 E-value=0.0096 Score=43.63 Aligned_cols=52 Identities=15% Similarity=0.006 Sum_probs=43.9
Q ss_pred eEEEEEeCCHHH---HHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 94 AQVAISTDDVYK---SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 94 ~Hiaf~V~Di~~---~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
.+|++.++|.++ ++++| +.|.++..++...+|+ .++..|+||.|+.|-|...
T Consensus 87 ~~l~l~~~d~ee~~~~~~aL-----a~gg~v~mpl~~~~wg-~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 87 FTLVLDTQDVEEGKRWFDNL-----AANGKIEMAWQETFWA-HGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred EEEEEECCCHHHHHHHHHHh-----hCCCEEEecchhcchh-hccEEEECCCCCEEEEEec
Confidence 488899889765 55555 7999999999998886 6889999999999999875
No 94
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=97.27 E-value=0.01 Score=50.39 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=74.2
Q ss_pred eeEEE-eeCCc--------cccCCEEEEEEeCCCC--cEEEEEeeccCCCCceEEEEeeeCCC-----------------
Q 031367 33 LNDVV-FVGSL--------QALGMKLLRTVDKPEY--KYTLAMLGYAEEDQTTVLELTYNYGV----------------- 84 (161)
Q Consensus 33 i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g--~~~~~~l~~~~~~~~~~leL~~~~~~----------------- 84 (161)
++||- +|.|. ..|||+.........| ......+.-+ ...+-|......
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccccccccccc
Confidence 58999 99998 6899998776442122 1222233322 344444322111
Q ss_pred --cc----c--ccCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCC----CceEEEEEECCCCCEEEEEecC
Q 031367 85 --TE----Y--TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG----LNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 85 --~~----~--~~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~----~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
.. + .+|.+..-|||+|+|++++++++ .++|++...+|..... +.....-++-++|..+-|+++.
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A----~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~ 152 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTS----VAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYK 152 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHH----HHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccC
Confidence 00 1 35678889999999999999999 5999998887765422 1134555788899999998864
Q ss_pred C
Q 031367 153 D 153 (161)
Q Consensus 153 ~ 153 (161)
.
T Consensus 153 ~ 153 (398)
T PLN02875 153 G 153 (398)
T ss_pred C
Confidence 3
No 95
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.24 E-value=0.015 Score=42.42 Aligned_cols=112 Identities=19% Similarity=0.113 Sum_probs=69.6
Q ss_pred CCcceeEEE-eeCCc-------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCc--c--cccCCCeeEE
Q 031367 29 KDLPLNDVV-FVGSL-------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT--E--YTKGNAYAQV 96 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl-------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~--~--~~~g~g~~Hi 96 (161)
...+++||- .|+|. ..|||+...+-... ...+ |-. + ...+-|...+... . ..+|.+..-|
T Consensus 6 g~~G~dFvEFa~~~~~~l~~~~~~lGF~~~a~hrsk--~v~l-~rQ-G----~I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 6 GLDGFDFVEFAVPDAQALAQLFTALGFQPVARHRSK--DVTL-YRQ-G----DINFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp -EEEEEEEEEE-SSTTSCHHHHCCCCEEEECCECCC--SEEE-EEE-T----TEEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCCeEEEEEecCCHHHHHHHHHHhCcceEEecCCc--ceEE-EEe-C----CEEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 346789999 99887 88999998764332 2332 222 2 3445443322221 1 1367889999
Q ss_pred EEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCCc
Q 031367 97 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 154 (161)
Q Consensus 97 af~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~ 154 (161)
||+|+|.++++++. .++|.+...+|... +.....=++-++|-++-|+++..-
T Consensus 78 afrV~Da~~A~~rA----~~~GA~~~~~~~~~--~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 78 AFRVDDAAAAYERA----VALGAEPVQEPTGP--GELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEES-HHHHHHHH----HHTT--EEEEEEET--T-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEeCCHHHHHHHH----HHcCCcCcccCCCC--CcEeeeeEEccCCCEEEEEecCCC
Confidence 99999999999999 59999987665432 224566689999999999998543
No 96
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00049 Score=56.24 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=73.9
Q ss_pred CCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCC--cEEEEEeeccCCCCceEEEEeeeCCCc--c-----ccc
Q 031367 28 PKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEY--KYTLAMLGYAEEDQTTVLELTYNYGVT--E-----YTK 89 (161)
Q Consensus 28 ~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g--~~~~~~l~~~~~~~~~~leL~~~~~~~--~-----~~~ 89 (161)
....+++||. +|.|. ..|||+.......+.| .|.-.-+.. +..+.-+...+.+. . ..+
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~----g~~vFv~~s~~~p~~~~~G~~l~~H 88 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQ----GKIVFVFNSAYNPDNSEYGDHLVKH 88 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhc----CCEEEEEecCCCCCchhhhhhhhhc
Confidence 3557899999 99998 7889987654322211 111011111 11222222122211 1 135
Q ss_pred CCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCC--ceEEEEEECCCCCEEEEEecCCc
Q 031367 90 GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGL--NTKITSFVDPDGWKTVLVDNEDF 154 (161)
Q Consensus 90 g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~--~~~~~f~~DPDG~~IEl~~~~~~ 154 (161)
|.+..-+||.|+|++++.+.+ +++|+++.++|...... ..+++-++-+.-...-++++..+
T Consensus 89 gdgvkdvafeVeD~da~~~~~----va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y 151 (381)
T KOG0638|consen 89 GDGVKDVAFEVEDADAIFQEA----VANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGY 151 (381)
T ss_pred ccchhceEEEecchHHHHHHH----HHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccc
Confidence 667889999999999999999 59999999988755442 24677788777666666665443
No 97
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=97.09 E-value=0.0019 Score=44.42 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=41.4
Q ss_pred eEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCC-CEEEEEecCC
Q 031367 94 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDG-WKTVLVDNED 153 (161)
Q Consensus 94 ~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG-~~IEl~~~~~ 153 (161)
+|++|.|+|++++.+.+. +..|+.....-.. +....+..++..++| ..|||+++..
T Consensus 1 dHv~i~V~Dl~~a~~~~~---~~lG~~~~~~~~~-~~~~v~~~~~~~~~~~~~iELi~p~~ 57 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYC---DVLGFEPWERYRD-EPQGVRVAFLYLGDGPVQIELIQPLD 57 (109)
T ss_dssp EEEEEEES-HHHHHHHHH---HCTTHEEEEEEEE-GCTTEEEEEEEETTETEEEEEEEESS
T ss_pred CEEEEEcCCHHHHHHHHH---HhhCCcEEEEEec-CCCCEEEEEEEeCCCcEEEEEEEeCC
Confidence 599999999999999996 3489875533222 222357888999998 6999999754
No 98
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=96.99 E-value=0.0019 Score=53.41 Aligned_cols=87 Identities=21% Similarity=0.354 Sum_probs=59.9
Q ss_pred cceeEEE-eeC--Cc--------cccCCEEEEEEeCCC--Cc-EEEEEeeccCCCCceEEEEeeeCCCcc---------c
Q 031367 31 LPLNDVV-FVG--SL--------QALGMKLLRTVDKPE--YK-YTLAMLGYAEEDQTTVLELTYNYGVTE---------Y 87 (161)
Q Consensus 31 ~~i~Hv~-~V~--Dl--------~vLG~~~~~~~~~~~--g~-~~~~~l~~~~~~~~~~leL~~~~~~~~---------~ 87 (161)
..|+|++ .|. .| .+|||+.....+.++ +. .+-++.+ +. +. +.|..|.+.+. .
T Consensus 166 ~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~S-p~--G~--vrlplN~s~~~~sqi~efl~~ 240 (363)
T COG3185 166 TAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVS-PC--GK--VRLPLNESADDKSQIGEFLRE 240 (363)
T ss_pred eeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEec-CC--Cc--EEeecccCCCchhHHHHHHHH
Confidence 5899999 887 33 899999988776543 22 2233344 22 23 44433443321 1
Q ss_pred ccCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCc
Q 031367 88 TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 126 (161)
Q Consensus 88 ~~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~ 126 (161)
-.|.|++||||.++|+.+++++| +++|+++...|.
T Consensus 241 y~G~GIQHIA~~T~dI~~tv~~l----r~rG~~fl~ip~ 275 (363)
T COG3185 241 YRGEGIQHIAFGTDDIYATVAAL----RERGVKFLPIPE 275 (363)
T ss_pred hCCCcceEEEecccHHHHHHHHH----HHcCCccCCCch
Confidence 25779999999999999999999 599999987653
No 99
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=96.89 E-value=0.0064 Score=50.58 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=59.3
Q ss_pred CcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccccCCCeeEEEEEe
Q 031367 30 DLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 100 (161)
Q Consensus 30 ~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~~g~g~~Hiaf~V 100 (161)
.-+.-||+ .|+|+ ..|||.. ++ ++.. ..+ ++ ...+-| .... + . ....-.-+|+++
T Consensus 245 ~~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~a-~cm---~d---tI~vMl-lt~~-D-~-~~~~evLl~Ls~ 308 (357)
T PRK01037 245 SPKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDKL-FLL---GK---TSLYLQ-QTKA-E-K-KNRGTTTLSLEL 308 (357)
T ss_pred CCceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCcc-ccc---cC---cEEEEE-ecCC-C-C-CCcceEEEEecc
Confidence 34566999 99999 5567664 33 2221 122 22 233322 2222 1 1 122345799999
Q ss_pred CCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 101 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 101 ~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
++-++ ++.+.+.+.++|.+...+|.+. |. .--|.|||||.||++..
T Consensus 309 ~Sre~-VD~lv~~A~aaGG~~~~~~~D~--Gf--~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 309 ECEHD-FVRFLRRWEMLGGELGEQADGH--FP--LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CCHHH-HHHHHHHHHHcCCCCCCCcccc--cC--cceeECCCCCEEEEEEE
Confidence 98643 3444445578999766555543 32 33489999999999864
No 100
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=95.99 E-value=0.0023 Score=52.42 Aligned_cols=115 Identities=18% Similarity=0.330 Sum_probs=73.4
Q ss_pred CCCcceeEEE-eeCCc----------cccCCEEEEEEeCCCCc--EE----EEEeeccCCCCceEEEEeeeCCCc-----
Q 031367 28 PKDLPLNDVV-FVGSL----------QALGMKLLRTVDKPEYK--YT----LAMLGYAEEDQTTVLELTYNYGVT----- 85 (161)
Q Consensus 28 ~~~~~i~Hv~-~V~Dl----------~vLG~~~~~~~~~~~g~--~~----~~~l~~~~~~~~~~leL~~~~~~~----- 85 (161)
+...+++|+. .++|. +.|||...|..+.+.-. ++ ++..++ .-.+.+..+.+.+
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~-----~esi~mpinEp~~G~k~k 248 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANY-----EESIKMPINEPAPGKKKK 248 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcC-----CccEEEeccCCCCCCccH
Confidence 4567899999 99988 99999998876533200 00 011111 1223343333321
Q ss_pred -------ccccCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCccc--------C-----CCc-----eE--EEEE
Q 031367 86 -------EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSI--------P-----GLN-----TK--ITSF 138 (161)
Q Consensus 86 -------~~~~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~--------~-----~~~-----~~--~~f~ 138 (161)
.|..|.|.+|||+.++|+-.+++.| +++|.++...|..- . -.. .+ +..=
T Consensus 249 sQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~l----r~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD 324 (381)
T KOG0638|consen 249 SQIQEYVEYHGGAGVQHIALNTEDIIEAIRGL----RARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVD 324 (381)
T ss_pred HHHHHHHHhcCCCceeeeeecchHHHHHHHHH----HhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEe
Confidence 1356789999999999999999999 69999999877411 0 000 11 2223
Q ss_pred ECCCCCEEEEEec
Q 031367 139 VDPDGWKTVLVDN 151 (161)
Q Consensus 139 ~DPDG~~IEl~~~ 151 (161)
.|-+|+++.|+.-
T Consensus 325 ~De~gyLLQIFTK 337 (381)
T KOG0638|consen 325 FDENGYLLQIFTK 337 (381)
T ss_pred cCCCcEEeeeecc
Confidence 6777999999874
No 101
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=95.68 E-value=0.49 Score=33.67 Aligned_cols=96 Identities=23% Similarity=0.342 Sum_probs=47.7
Q ss_pred cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcccc-cC-CCeeEEEEEeCCHHHHHHHHhHHHHhcCCe
Q 031367 43 QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYT-KG-NAYAQVAISTDDVYKSAEVVNLVTQELGGK 120 (161)
Q Consensus 43 ~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~~~-~g-~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~ 120 (161)
+.|||+++.+.. .+++++.. +....+.|-.+++....+ .| -...+|-+.|++.+++.+-| ++|..
T Consensus 20 ~~LGfkll~EEn------a~a~lg~~--~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EIe~LL-----ar~~~ 86 (125)
T PF14506_consen 20 KTLGFKLLSEEN------ALAILGDQ--QKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEIEALL-----ARGAQ 86 (125)
T ss_dssp TTT--EEEEEET------TEEEEE-T--T--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHHHHHH-----HC-S-
T ss_pred hccCcEEeeccc------cEEEecCC--CCceEEEEecCCccccccccCcceeeEEEEEcCCHHHHHHHH-----hcccc
Confidence 899999987753 13566653 234445553344332211 22 36789999999988765555 77766
Q ss_pred eecCCcccCCCceEEEEEECCCCCEEEEEecCCc
Q 031367 121 ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 154 (161)
Q Consensus 121 i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~ 154 (161)
+..- ..+..++.+-..+|+|.++.|....+.
T Consensus 87 ~~~l---~kg~~gyAfe~vSPEgd~~llhaEdd~ 117 (125)
T PF14506_consen 87 YDRL---YKGKNGYAFEAVSPEGDRFLLHAEDDI 117 (125)
T ss_dssp -SEE---EE-SSSEEEEEE-TT--EEEEE--S-G
T ss_pred ccee---EEcCCceEEEEECCCCCEEEEEEcCCH
Confidence 4321 112223444488999999999987543
No 102
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=95.31 E-value=0.13 Score=37.90 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=40.8
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcc-----------------cCCCceEEEEEECCCCCEEEEEecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGS-----------------IPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~-----------------~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
++.|+++.|.|++++.+-.+ +..|.++..++.. .++...+.+++.-++|..|||++..
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~---~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYT---EVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHH---HhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 57999999999999888775 4579876432110 0111135677887889999999975
No 103
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=94.92 E-value=0.18 Score=34.27 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=39.2
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECC---CCCEEEEEecCC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDP---DGWKTVLVDNED 153 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DP---DG~~IEl~~~~~ 153 (161)
++.|+++.|+|++++.+-.. +..|.+.............+.+++.+. +|..++|.+...
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~---~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYT---DVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHH---HccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 46899999999998888875 457988664322111111344556665 678899987644
No 104
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=94.89 E-value=0.19 Score=35.41 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=39.7
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCccc----------CCCceEEEEEECCCC-CEEEEEecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSI----------PGLNTKITSFVDPDG-WKTVLVDNE 152 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~----------~~~~~~~~f~~DPDG-~~IEl~~~~ 152 (161)
+++|+++.|.|++++.+-.. +.|.++....... +....+.+++..|+| ..|||++..
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~----~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~ 70 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFL----ELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFH 70 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHH----HcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEec
Confidence 57899999999999888885 5898865432110 111235677777765 689999853
No 105
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.40 E-value=0.36 Score=32.54 Aligned_cols=57 Identities=25% Similarity=0.209 Sum_probs=38.1
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+++||++.|+|++++.+-.. +..|..+...... +......+.+..+++..||+....
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~---~~lG~~~~~~~~~-~~~~~~~~~~~~~~~~~i~l~~~~ 59 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYV---EILGFKVIREVYR-PERGSYKLDLLLNGGYQLELFSFP 59 (125)
T ss_pred ccceEEEEcCCHHHHHHHHH---HhcCCEEeeeeec-CCCCcEEEEEecCCCcEEEEEEcC
Confidence 57899999999999888875 4689887643221 111112234556677889988654
No 106
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=93.89 E-value=0.33 Score=39.01 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=43.1
Q ss_pred CCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCc--cc--ccCCCeeE
Q 031367 29 KDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT--EY--TKGNAYAQ 95 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~--~~--~~g~g~~H 95 (161)
....|.||. .|.|+ ++|||++..+... ..|++.++ .+..+.. ..|... .. ....|+..
T Consensus 165 ~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~~------A~F~a~G~--YHHHia~-N~W~s~~~~~~~~~~~GLa~ 235 (265)
T COG2514 165 AGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGPS------ALFLASGD--YHHHLAA-NTWNSRGARPRNANASGLAW 235 (265)
T ss_pred CCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCCc------ceEEecCC--cceeEEE-eccccCCCCCCCCCCCCcce
Confidence 367899999 99999 8999999887221 25777765 3333444 233322 11 12347778
Q ss_pred EEEEeCCHH
Q 031367 96 VAISTDDVY 104 (161)
Q Consensus 96 iaf~V~Di~ 104 (161)
+.+.+++-.
T Consensus 236 ~~i~~~~~~ 244 (265)
T COG2514 236 LEIHTPDPE 244 (265)
T ss_pred EEEEcCCcc
Confidence 888888753
No 107
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=93.40 E-value=0.49 Score=32.16 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=37.8
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+.|++|.|+|++++.+-.. +..|.+........+......+|++. +|..++|+++.
T Consensus 1 ~~hv~l~v~d~~~~~~fy~---~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~ 56 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYR---DVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPL 56 (128)
T ss_pred CcEEEEEeCCHHHHHHHHH---HhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEEC
Confidence 3699999999999888885 45788765432221122234566664 78889999864
No 108
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=92.62 E-value=0.25 Score=36.68 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=29.1
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCc-eEEEEEECCCCCEEEEEecC
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLN-TKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~-~~~~f~~DPDG~~IEl~~~~ 152 (161)
+.|+.+.|+|++++.++++ ++.|.++...-.-..+|. ...++| +|| .|||+...
T Consensus 1 lDH~v~~v~dl~~a~~~~~---~~lGf~~~~gg~h~~~GT~N~li~f--~~~-YlEli~i~ 55 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFE---QRLGFTVTPGGEHPGWGTANALIPF--GDG-YLELIAID 55 (175)
T ss_dssp EEEEEEE-TTGGG----GG---GS--S--EEEEE-TTT-EEEEEEE---SSS-EEEEEEES
T ss_pred CCEEEEEcCCHHHHHHhhh---hcceEeecCCCcCCCCccEEEEEee--CCc-eEEEEEeC
Confidence 4799999999999999995 488999774322112232 244555 678 99999964
No 109
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=91.92 E-value=1.4 Score=29.67 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=36.0
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
++|+++.|+|++++.+-.+ +..|.+....-.. +.......|+.-.+|..|||++..
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~---~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 57 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYV---TYFGATSNEKYHN-PRKGFESYFLSFDDGARLELMTRP 57 (125)
T ss_pred ceEEEEEecCHHHHHHHHH---HHhCCEeeceEeC-CCCCceEEEEecCCCcEEEEEcCc
Confidence 5799999999998887775 4578875422110 111123445554578889998754
No 110
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=91.58 E-value=1 Score=29.47 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=37.4
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCCc
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 154 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~ 154 (161)
++|+++.|+|++++.+-.+ ...|.+....+... ...+++..+++..++|.+....
T Consensus 1 i~Hi~l~v~d~~~~~~FY~---~~lG~~~~~~~~~~----~~~~~~~~~~~~~i~l~~~~~~ 55 (114)
T cd07245 1 LDHVALRVPDLEASRAFYT---DVLGLEEGPRPPFL----FPGAWLYAGDGPQLHLIEEDPP 55 (114)
T ss_pred CCeEEEecCCHHHHHHHHH---HccCCcccCcCCCC----CCceEEEeCCCcEEEEEecCCC
Confidence 4799999999998887775 57788765443211 1335666666668898876543
No 111
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=90.66 E-value=1.5 Score=29.52 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=36.8
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCC---CCEEEEEecC
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD---GWKTVLVDNE 152 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPD---G~~IEl~~~~ 152 (161)
+.|+++.|+|++++.+-.. ...|.+....+... ......+|+..++ +..|++.+..
T Consensus 1 ~~hv~i~v~d~~~a~~fY~---~~lG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~ 59 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYT---DVLGMKLLRRKDFP-EGKFTLVFLGYPDEDSEGVLELTYNW 59 (121)
T ss_pred CeeEEEEecCcHHHHHHHH---hccCCeEEEEEecC-CCceEEEEecCCCCCCccEEEEEecC
Confidence 3699999999998888775 45698876543221 1112345666554 6789987653
No 112
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=90.52 E-value=2.5 Score=35.34 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=63.3
Q ss_pred cCCCCcceeEEE-eeCCc--------cccCCEEEEEEeCCCCcEEEEEeeccCCCCceEEEEeeeCCCcc------cccC
Q 031367 26 FNPKDLPLNDVV-FVGSL--------QALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKG 90 (161)
Q Consensus 26 ~~~~~~~i~Hv~-~V~Dl--------~vLG~~~~~~~~~~~g~~~~~~l~~~~~~~~~~leL~~~~~~~~------~~~g 90 (161)
.++..+++++|- .|.|. ..|||+....--.. .+.+ |-. +. +-|+.+..... ..+|
T Consensus 16 ~P~~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk--~v~l-~rQ-----Gd--inlvvn~~~~s~a~~f~~~Hg 85 (363)
T COG3185 16 NPEGTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK--AVTL-YRQ-----GD--INLVVNAEPDSFAAEFLDKHG 85 (363)
T ss_pred CCCCCCceeEEEEecCCHHHHHHHHHHHhCcccccccccc--ceeE-EEe-----CC--EEEEEcCCCcchhhHHHHhcC
Confidence 334468899999 99988 88899885543222 2322 222 12 33333333221 1356
Q ss_pred CCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCc-----ccCC---CceEEEEEECCCC
Q 031367 91 NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG-----SIPG---LNTKITSFVDPDG 143 (161)
Q Consensus 91 ~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~-----~~~~---~~~~~~f~~DPDG 143 (161)
.+..-+||.|+|..+++++. .+.|.+....+. .+|. ..+..+||.|..|
T Consensus 86 ps~~a~a~~V~DA~~A~a~A----~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 86 PSACAMAFRVDDAEQALARA----LALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred CchheeEEeeCCHHHHHHHH----HHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 77889999999999999998 489985443322 1221 1245788888773
No 113
>PRK11478 putative lyase; Provisional
Probab=90.46 E-value=1.9 Score=29.54 Aligned_cols=56 Identities=13% Similarity=0.009 Sum_probs=34.4
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
++.|+++.|+|++++.+-.. +..|.++...... +........+.-.++..+|+++.
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~---~~LG~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~ 61 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYC---DILGFTLQSEVYR-EARDSWKGDLALNGQYVIELFSF 61 (129)
T ss_pred eecEEEEEcCCHHHHHHHHH---HHhCCEecccccc-cccccceeeEecCCCcEEEEEEe
Confidence 57899999999999887775 5679887543211 11001112222235678888864
No 114
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=90.46 E-value=1.3 Score=30.21 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=35.7
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhc---CCeeecCCcccCCCceEEEEEECCCCCEEEEEecCC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQEL---GGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~---Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
+++|+.+.|+|++++.+-.. +.. |.+...... . ...|+...++..|+|.+...
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~---~~l~~~G~~~~~~~~---~---~~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYD---WLLGLLGFEEVKEWE---D---GRSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHH---HHHhhcCCEEEEeec---c---CceEEecCCceEEEEEeccc
Confidence 47899999999999888775 334 888664431 1 22344335677888887653
No 115
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=90.26 E-value=1.4 Score=29.64 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=38.1
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCc-ccCCCceEEEEEECCCCCEEEEEec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG-SIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~-~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
+++|+++.|.|++++.+-.+ +..|.++..... ..........++...+. .+++...
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~---~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 57 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYT---DVLGFRLVEESDNDGEGGDLRIAFLRIGEG-HIELFLN 57 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHH---HTTTSEEEEEEEEESTTEEEEEEEEESTSS-CEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHH---HHhCCcEEeeeccccccccccceeeccccc-ceeeeee
Confidence 47899999999998888776 679999876544 12222134555666654 4666665
No 116
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=89.95 E-value=2.9 Score=31.72 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=27.0
Q ss_pred cCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecC
Q 031367 89 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 124 (161)
Q Consensus 89 ~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~ 124 (161)
.+-.+.|++|.|.|++++++-.. +..|.++...
T Consensus 24 ~~~~~~Ht~i~V~Dle~Si~FY~---~vLG~~~~~r 56 (185)
T PLN03042 24 KGYIMQQTMFRIKDPKASLDFYS---RVLGMSLLKR 56 (185)
T ss_pred CCcEEEEEEEeeCCHHHHHHHHH---hhcCCEEEEE
Confidence 45678999999999999888775 5689987654
No 117
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=89.55 E-value=1.7 Score=27.83 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=39.0
Q ss_pred EEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCCc
Q 031367 95 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 154 (161)
Q Consensus 95 Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~~ 154 (161)
|+++.|+|++++.+-+. +..|.+....... ...+.+++.++ +..|+|.+..+.
T Consensus 1 Hi~i~~~d~~~~~~fy~---~~lg~~~~~~~~~---~~~~~~~~~~~-~~~i~l~~~~~~ 53 (112)
T cd06587 1 HVGLTVSDLEAAVAFYE---EVLGFEVLFRNGN---GGAEFAVLGLG-GTRLELFEGDEP 53 (112)
T ss_pred CcceeeCCHHHHHHHHH---hccCCEEEEeecc---CCEEEEEEecC-CceEEEecCCCC
Confidence 88999999999888885 3489887754421 12466777776 799999997653
No 118
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=88.69 E-value=2.6 Score=30.74 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=35.8
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEEC--CCCCEEEEEecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVD--PDGWKTVLVDNE 152 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~D--PDG~~IEl~~~~ 152 (161)
|++||++.|+|++++.+-.+ +-.|.++..... ....|+.. .++..|+|.+..
T Consensus 1 gl~HI~i~V~Dle~s~~FY~---~~LG~~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~ 54 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLT---DVLGFREVGEEG------DRVRLEEGGGGPGAVVDVLEEP 54 (157)
T ss_pred CcccEEEEeCCHHHHHHHHH---HhcCCEEEeeeC------CEEEEEecCCCCCCEEEEEeCC
Confidence 57899999999999888875 456888654321 12333333 358899998863
No 119
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=87.92 E-value=2.8 Score=27.68 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=35.5
Q ss_pred EEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCC--CEEEEEecCC
Q 031367 95 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDG--WKTVLVDNED 153 (161)
Q Consensus 95 Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG--~~IEl~~~~~ 153 (161)
|+++.|.|++++.+-.. +..|.++........ ...++++.++++ ..++|.+...
T Consensus 1 Hv~l~v~d~~~~~~fY~---~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 56 (119)
T cd07263 1 LVSLYVDDQDKALAFYT---EKLGFEVREDVPMGG--GFRWVTVAPPGSPETSLVLAPPAN 56 (119)
T ss_pred CceEEeCCHHHHHHHHH---hccCeEEEEeeccCC--CcEEEEEeCCCCCeeEEEEeCCCC
Confidence 89999999998877664 458988775432111 134666777764 5677765543
No 120
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=87.17 E-value=2.9 Score=31.68 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=40.9
Q ss_pred CeeEEEEEeC--CHHHHHHHHhHHHHhcCCeeecCCcc-cCCCceEEEEEECCC-CCEEEEEecCC
Q 031367 92 AYAQVAISTD--DVYKSAEVVNLVTQELGGKITRQPGS-IPGLNTKITSFVDPD-GWKTVLVDNED 153 (161)
Q Consensus 92 g~~Hiaf~V~--Di~~~~~~L~~~~~~~Gv~i~~~p~~-~~~~~~~~~f~~DPD-G~~IEl~~~~~ 153 (161)
+++|+++.|+ |++++.+-.+ ...|.+....... .+....+..++..|+ +..|+|.++.+
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~---~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYR---KVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHH---HhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC
Confidence 5789999999 9998887765 5689886543221 112224567788887 46799998754
No 121
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=86.10 E-value=3.7 Score=27.79 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=34.9
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
+.|+++.|+|++++.+-.+ +..|.+...... .+......+++. +++..|||.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~---~~lG~~~~~~~~-~~~~~~~~~~~~-~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYE---DVLGAHVSHIEE-VPEQGVKVVFIA-LGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHH---HHhCCCCcccee-CCCCCcEEEEEe-cCCEEEEEEec
Confidence 5799999999999888885 457887653211 111112444444 34678898864
No 122
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=85.98 E-value=4.8 Score=27.20 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=35.1
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCC-CCEEEEEecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD-GWKTVLVDNE 152 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPD-G~~IEl~~~~ 152 (161)
.++|+++.|+|++++.+-.. ...|.++.... ...+++...+ +..|.|.+.+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~---~~lG~~~~~~~-------~~~~~l~~~~~~~~l~l~~~~ 53 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQ---DVLGLEVLERT-------DSTAVLGTGGKRPLLVLEEDP 53 (125)
T ss_pred EEEEEEEEECCHHHHHHHHH---hccCcEEEEcC-------CCEEEEecCCCeEEEEEEeCC
Confidence 36899999999998887775 45798876542 1234555554 5677777654
No 123
>PLN02367 lactoylglutathione lyase
Probab=85.12 E-value=6.9 Score=30.99 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=39.6
Q ss_pred cCCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEE--C----C------------CCCEEEEEe
Q 031367 89 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFV--D----P------------DGWKTVLVD 150 (161)
Q Consensus 89 ~g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~--D----P------------DG~~IEl~~ 150 (161)
.+-.+.|.+++|.|+++.++-.. +..|.+...... .+....+..|+. + | ++..|||..
T Consensus 72 ~~~~~~HtmlRVkDle~Sl~FYt---~vLGm~ll~r~d-~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~ 147 (233)
T PLN02367 72 KGYIMQQTMYRIKDPKASLDFYS---RVLGMSLLKRLD-FPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTH 147 (233)
T ss_pred CCcEEEEEEEEeCCHHHHHHHHH---HhcCCEEeEEEe-cCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEec
Confidence 44568999999999998888775 568998775432 233223444542 1 1 146899987
Q ss_pred cC
Q 031367 151 NE 152 (161)
Q Consensus 151 ~~ 152 (161)
+.
T Consensus 148 n~ 149 (233)
T PLN02367 148 NW 149 (233)
T ss_pred CC
Confidence 64
No 124
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=84.54 E-value=6.5 Score=27.39 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=34.3
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCC---CCEEEEEecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD---GWKTVLVDNE 152 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPD---G~~IEl~~~~ 152 (161)
.+.|+++.|+|++++.+-.+ +-.|.++..... ...+|++.++ .+.|++....
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~---~vlGl~~~~~~~------~~~~~~~~~~~~~~~~i~l~~~~ 57 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYR---DRLGFRVSDRFK------GRGAFLRAAGGGDHHNLFLIKTP 57 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHH---HhcCCEEEEEec------CcEEEEECCCCCCCcEEEEecCC
Confidence 57899999999998887775 457888653211 1235665542 3577776543
No 125
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=84.37 E-value=7.4 Score=26.74 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=35.4
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECC--CCCEEEEEecC
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDP--DGWKTVLVDNE 152 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DP--DG~~IEl~~~~ 152 (161)
+.|+.+.|+|++++.+-.. +..|.++...... ....|+..+ .+..+++++..
T Consensus 2 i~hv~l~v~D~~~s~~FY~---~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~~~ 55 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYR---DVLGFTVTDRGPL-----GGLVFLSRDPDEHHQIALITGR 55 (134)
T ss_pred eeEEEEEecCHHHHHHHHH---HhcCCEEEeeccC-----CcEEEEEecCCCceEEEEEecC
Confidence 6799999999999888775 4589886643211 134565544 35678887654
No 126
>PF02676 TYW3: Methyltransferase TYW3; InterPro: IPR003827 The methyltransferase TYW3 (tRNA-yW- synthesising protein 3) has been identified in yeast to be involved in wybutosine (yW) biosynthesis []. yW is a complexly modified guanosine residue that contains a tricyclic base and is found at the 3'-position adjacent the anticodon of phenylalanine tRNA. TYW3 is an N-4 methylase that methylates yW-86 to yield yW-72 in an Ado-Met-dependent manner [].; PDB: 1TLJ_A 2DVK_A 2IT3_B 2IT2_A 2DRV_A 2QG3_B.
Probab=84.20 E-value=0.31 Score=37.77 Aligned_cols=25 Identities=24% Similarity=0.124 Sum_probs=19.1
Q ss_pred CceeeeecCCceEEEEecCCceeec
Q 031367 2 PALFSLLSNSGSIVVVIKSAYSLLF 26 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (161)
|-.|..|||+||+.+|..+.+..++
T Consensus 39 ~~~~TTSSCSGRI~vf~~~~~~~~k 63 (205)
T PF02676_consen 39 PDYVTTSSCSGRISVFDEGEKPWDK 63 (205)
T ss_dssp TTEEEEEEES-EEEEEEE-SSTTSC
T ss_pred CCeEEeccccceEEEEecccccccc
Confidence 5689999999999999998665555
No 127
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=83.44 E-value=8.8 Score=26.67 Aligned_cols=57 Identities=11% Similarity=0.196 Sum_probs=33.4
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+++|+++.|+|++++.+-.. .-.|.+................++. -+|.+|++.+..
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~---~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~ 60 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQ---NIFNAREVYSSGDKTFSLSKEKFFL-IGGLWIAIMEGD 60 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHH---HHhCCeeEEecccccccccceeEEE-cCCeEEEEecCC
Confidence 68999999999999888775 4578765433221110001111222 235778887543
No 128
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=83.10 E-value=14 Score=26.25 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=36.8
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccC--------C--CceEEEEEE---CCCCCEEEEEecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIP--------G--LNTKITSFV---DPDGWKTVLVDNE 152 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~--------~--~~~~~~f~~---DPDG~~IEl~~~~ 152 (161)
.+.|+++.|.|+++.++--+ +..|.+..+...... . +....+|+. +..+..+||....
T Consensus 2 ~~~Hv~irV~DlerSi~FY~---~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~ 72 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYR---EVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNY 72 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHH---HhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecC
Confidence 36799999999998888775 568998765331111 0 111223443 3457789999753
No 129
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=82.46 E-value=8.1 Score=27.02 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=34.8
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
++|+.+.|+|++++.+-.+ +..|.++...... + ....+++.+ ++..++|.++.
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~---~vLGf~~~~~~~~-~--~~~~~~~~~-g~~~l~l~~~~ 53 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFS---TKLGFEPVAYHGS-E--DKASYLLRQ-GDINFVLNSPL 53 (136)
T ss_pred CeEEEEEeCCHHHHHHHHH---HhcCCeEEEecCC-C--ceEEEEEEc-CCEEEEEecCC
Confidence 4799999999999888875 4589987643221 1 123454543 45667877643
No 130
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=81.67 E-value=6.1 Score=28.46 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=30.2
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccC-CCceEEEEEECCCC
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIP-GLNTKITSFVDPDG 143 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~-~~~~~~~f~~DPDG 143 (161)
+.|+++.|+|++++.+-.. +..|.++...... + ....+.+|++-.+|
T Consensus 2 i~Hv~l~V~Dle~a~~FY~---~~LG~~~~~~~~~-~~~~~~~~~~l~~~~~ 49 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYT---ETFGLKPSDVIYL-PGPGNPVAAFLRLDRG 49 (153)
T ss_pred ccEEEEecCCHHHHHHHHH---HhcCCeEEeeEec-CCCCCcEEEEEecCCC
Confidence 5799999999998877775 5789887543211 1 11134566654444
No 131
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=80.64 E-value=10 Score=27.35 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=36.2
Q ss_pred CCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcc-cC-CCceEEEEEE-CCCCCEEEEEec
Q 031367 91 NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGS-IP-GLNTKITSFV-DPDGWKTVLVDN 151 (161)
Q Consensus 91 ~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~-~~-~~~~~~~f~~-DPDG~~IEl~~~ 151 (161)
.++.|+++.|+|++++.+-.. ...|.++...... .+ ......+|++ ++..+.|++.+.
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~---~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 68 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYR---DVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG 68 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHH---HccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC
Confidence 468999999999999887775 4588886532111 01 1123455554 455677777554
No 132
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=78.68 E-value=13 Score=26.07 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=33.3
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
++.|+++.|+|++++.+-.. ...|.++.... ...+|+.- +|.++.+...
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~---~~lG~~~~~~~-------~~~~~~~~-~g~~l~l~~~ 52 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYE---KVLGAKLLVKG-------RKTAYFDL-NGLWIALNEE 52 (139)
T ss_pred cEEEEEEEecCHHHHHHHHH---hccCCEEEeec-------CeeEEEec-CCeEEEeecc
Confidence 57899999999999888875 46788765321 12345544 4677776544
No 133
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=78.28 E-value=12 Score=25.35 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 124 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~ 124 (161)
++.|+++.|+|++++.+-.. ...|.+....
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~---~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFAT---DVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCHHHHHHHHH---hccCceeccC
Confidence 46799999999998877664 4578876544
No 134
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=77.93 E-value=13 Score=25.28 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=32.2
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
.+.|+++.|+|++++.+-.. +-.|.+..... ..++++...+|..+++..
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~---~~lG~~~~~~~-------~~~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 4 TLNHTIVPARDREASAEFYA---EILGLPWAKPF-------GPFAVVKLDNGVSLDFAQ 52 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHH---HhcCCEeeecc-------CCEEEEEcCCCcEEEEec
Confidence 46899999999998877775 45788765421 123444444566676665
No 135
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.89 E-value=7.9 Score=24.87 Aligned_cols=52 Identities=19% Similarity=-0.012 Sum_probs=30.4
Q ss_pred EEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCc-eEEEEEECCCCCEEE
Q 031367 96 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLN-TKITSFVDPDGWKTV 147 (161)
Q Consensus 96 iaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~-~~~~f~~DPDG~~IE 147 (161)
|-+...|--.+..++...+...|+.+...-....+.. .-.+|++|++|+.|+
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 3444445323333444444799999886433332221 358999999998773
No 136
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=77.32 E-value=13 Score=24.46 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=33.2
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECC--CCCEEEEEec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDP--DGWKTVLVDN 151 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DP--DG~~IEl~~~ 151 (161)
.++|+.|.|+|++++.+-.. +..|.++.... ...+|++.+ +...+.+...
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~---~~lg~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 53 (117)
T cd07240 2 RIAYAELEVPDLERALEFYT---DVLGLTVLDRD-------AGSVYLRCSEDDHHSLVLTEG 53 (117)
T ss_pred ceeEEEEecCCHHHHHHHHH---hccCcEEEeec-------CCeEEEecCCCCcEEEEEEeC
Confidence 36899999999998888775 45888876432 124566655 3345555543
No 137
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=75.36 E-value=17 Score=24.35 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=30.0
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEe
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 150 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~ 150 (161)
+.|+++.|+|++++.+-.+ +.|.+....... ...+.++-++|..|.+..
T Consensus 1 ~~~i~l~V~D~~~a~~FY~----~LGf~~~~~~~~-----~~~~~~~~~~~~~l~l~~ 49 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYR----RLGFDFPEEADD-----EPHVEAVLPGGVRLAWDT 49 (122)
T ss_pred CceEEEEeccHHHHHHHHH----HhCceecCCcCC-----CCcEEEEeCCCEEEEEEc
Confidence 3699999999998877773 588875432110 123444555566555433
No 138
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=75.26 E-value=7.2 Score=27.03 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=35.3
Q ss_pred EEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCE
Q 031367 97 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWK 145 (161)
Q Consensus 97 af~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~ 145 (161)
+|....+|+.++.+...++..|+.+. +|.+.|....++.-++-|+|+.
T Consensus 12 s~d~~~LD~~~~~Ive~akrtg~~v~-GPiPLPTk~~~~tvlrsP~~~k 59 (104)
T COG0051 12 SFDHRLLDQVCREIVETAKRTGADVK-GPIPLPTKRERVTVLRSPHGEK 59 (104)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCeee-CCccCCCceEEEEEEeCCCCCC
Confidence 34455688888888888899999876 5666665434566689998863
No 139
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=74.86 E-value=16 Score=24.30 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=22.8
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~ 123 (161)
++.|+++.|+|++++.+-.. ..|.++..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~----~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE----AFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH----HhCCcEEe
Confidence 57899999999998877774 58888653
No 140
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=74.62 E-value=19 Score=23.75 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=32.0
Q ss_pred eEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 94 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 94 ~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
.|+++.|+|++++.+-.. +-.|.++..... + ...++++...++..+.+...
T Consensus 2 ~hi~l~v~d~~~s~~FY~---~~lG~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~ 52 (114)
T cd07247 2 VWFELPTTDPERAKAFYG---AVFGWTFEDMGD--G--GGDYAVFSTGGGAVGGLMKA 52 (114)
T ss_pred EEEEeeCCCHHHHHHHHH---hccCceeeeccC--C--CCceEEEEeCCccEEEEecC
Confidence 599999999998877775 346888765432 1 12344555444445555544
No 141
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=73.57 E-value=18 Score=24.93 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=32.8
Q ss_pred eEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCC-CCEEEEEec
Q 031367 94 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD-GWKTVLVDN 151 (161)
Q Consensus 94 ~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPD-G~~IEl~~~ 151 (161)
+|+++.|+|++++.+-.. +..|.++..... .+ +.....|++..+ +..+++...
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~---~~lG~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~ 54 (131)
T cd08343 1 DHVVLRTPDVAATAAFYT---EVLGFRVSDRVG-DP-GVDAAAFLRCDEDHHDLALFPG 54 (131)
T ss_pred CcEEEEcCCHHHHHHHHH---hcCCCEEEEEEc-cC-CceeEEEEEcCCCcceEEEEcC
Confidence 499999999999877775 457988653321 11 112345555443 446676654
No 142
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=73.54 E-value=17 Score=26.62 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=23.6
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeee
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 122 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~ 122 (161)
+++|++|.|+|++++.+-.. +-.|.+..
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~---~vLG~~~~ 33 (166)
T cd09014 6 RLDHVNLLASDVDANRDFME---EVLGFRLR 33 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHH---HccCCEEE
Confidence 67899999999999888886 46888765
No 143
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=72.99 E-value=15 Score=23.81 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=30.7
Q ss_pred CHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 102 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 102 Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
..+++.+.+ ++.|+.+.. ...... +.+.+...|.||+.+|+.-..
T Consensus 30 ~~~~~~~~l----~~~G~~v~~-ve~~~~-g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKL----EAQGYQVRE-VEFDDD-GCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHH----HhcCCceEE-EEEcCC-CEEEEEEEECCCCEEEEEEcC
Confidence 566677777 589996553 221112 246788999999999998654
No 144
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=72.66 E-value=21 Score=23.88 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=32.3
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECC-CCCEEEEEec
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDP-DGWKTVLVDN 151 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DP-DG~~IEl~~~ 151 (161)
+.|+.+.|+|++++.+-...++-..|.+....+. ...+++..+ .+..+.|...
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~------~~~~~~~~~~~~~~~~l~~~ 54 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG------PGAVGYGKGGGGPDFWVTKP 54 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC------CceeEeccCCCCceEEEecc
Confidence 3699999999998877775222225887654321 122444444 3566777654
No 145
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=72.39 E-value=19 Score=23.74 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=24.8
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 125 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p 125 (161)
++.|+.+.|+|++++.+-.+ +..|.+....+
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~---~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYT---RVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHH---HHhCceeeccc
Confidence 57899999999998888876 45798876543
No 146
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=72.24 E-value=30 Score=24.02 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=29.3
Q ss_pred cCCCeeEEEEEeCCH---HHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEE
Q 031367 89 KGNAYAQVAISTDDV---YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 149 (161)
Q Consensus 89 ~g~g~~Hiaf~V~Di---~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~ 149 (161)
.+++ ..|++.++|. ++++++| +.|.. ++ .++..++|--|..|.|+
T Consensus 69 ~~~~-~sl~i~~~~~ee~~~~f~~L-----s~gG~--------~~--~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 69 FGNN-ISLCIECDDEEEIDRIFDKL-----SEGGQ--------WF--SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp --TT-EEEEEEESSHHHHHHHHHHH-----HTTTE--------TC--CEEEEEE-TTS-EEEEE
T ss_pred CCCc-EEEEEEcCCHHHHHHHHHHH-----HcCCC--------cc--ceeEEEEeCCCCEEEeC
Confidence 3445 4899999985 5566666 45544 22 37889999999999875
No 147
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=71.83 E-value=24 Score=23.73 Aligned_cols=30 Identities=23% Similarity=0.093 Sum_probs=23.4
Q ss_pred CCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeec
Q 031367 91 NAYAQVAISTDDVYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 91 ~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~ 123 (161)
.+++|+++.|+|++++.+-.. +-.|.+...
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~---~~lG~~~~~ 34 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFT---DVLGLEETG 34 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHH---hCcCCEEEe
Confidence 368899999999998877775 456887653
No 148
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=71.76 E-value=18 Score=25.07 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=31.5
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
++|+++.|+|++++.+-.+ +-.|.++.... ...+|+.- .|.++++....
T Consensus 1 i~HV~l~V~Dl~~a~~FY~---~~LG~~~~~~~-------~~~~~~~~-~~~~l~l~~~~ 49 (131)
T cd08363 1 INHMTFSVSNLDKSISFYK---HVFMEKLLVLG-------EKTAYFTI-GGTWLALNEEP 49 (131)
T ss_pred CceEEEEECCHHHHHHHHH---HhhCCEEeccC-------CccceEee-CceEEEEEccC
Confidence 3699999999999888886 56787754321 11233432 35677765543
No 149
>PF15067 FAM124: FAM124 family
Probab=65.50 E-value=6.4 Score=31.15 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=26.1
Q ss_pred eEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEE
Q 031367 94 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTV 147 (161)
Q Consensus 94 ~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IE 147 (161)
.-+.|.|.|+-+++.-| =..+. | +.. ++ --..|||||.|=
T Consensus 195 avLqF~V~~igqLvpLL-----Pnpc~----P--IS~--~r-WqT~D~DGNkIL 234 (236)
T PF15067_consen 195 AVLQFRVEDIGQLVPLL-----PNPCS----P--ISE--TR-WQTEDYDGNKIL 234 (236)
T ss_pred eEEEEEecchhhhcccC-----CCCcc----c--ccC--Cc-ceeeCCCCCEec
Confidence 47999999998877776 22221 1 111 22 237999999984
No 150
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=65.48 E-value=16 Score=25.02 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=32.7
Q ss_pred eCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCC
Q 031367 100 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 144 (161)
Q Consensus 100 V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~ 144 (161)
...++++++.+.+.+++.|+.+. +|.+.|....++.-.+-|-|+
T Consensus 12 ~~~Ld~~~~~I~~~ak~~g~~~~-GPipLPtk~~~~tv~rsPh~~ 55 (99)
T TIGR01046 12 VRSLEKVCAQIKRIAEKTGVRMS-GPVPLPTKRLRVPTRKSPDGE 55 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEE-CCccCCcceEEEEeeeCCCCC
Confidence 34478888888888899999876 566666644567778999863
No 151
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.20 E-value=21 Score=23.11 Aligned_cols=51 Identities=12% Similarity=-0.024 Sum_probs=29.0
Q ss_pred EEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCc-eEEEEEECCCCCEEE
Q 031367 97 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLN-TKITSFVDPDGWKTV 147 (161)
Q Consensus 97 af~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~-~~~~f~~DPDG~~IE 147 (161)
-+.+.|--.+.-++...+...|+.+...-....+.. .-.+|++|.+|..|+
T Consensus 5 eV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 5 TVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred EEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 344445323333333334688998876433322211 247999999998874
No 152
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=65.18 E-value=37 Score=22.56 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=23.7
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecC
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 124 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~ 124 (161)
++.|+.+.|+|++++.+-.. +..|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~---~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYV---DVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHH---hccCCEEecc
Confidence 57899999999998887775 4478886543
No 153
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=64.63 E-value=12 Score=25.31 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=23.7
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~ 123 (161)
++.|++|.|+|++++.+-.. +..|.++..
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~---~~lG~~~~~ 32 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYR---EVLGLDEVG 32 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHH---hccCCEeee
Confidence 57899999999998877775 468988654
No 154
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.36 E-value=18 Score=21.46 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCee
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKI 121 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i 121 (161)
+...+.|.+++.+.+.+.| +++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L----~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVL----QERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHH----HHCCceE
Confidence 4678999999988888888 5999875
No 155
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=63.01 E-value=44 Score=25.06 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=27.1
Q ss_pred CCcceeEEE-eeCCc-------cccCCEEEEEEeCCCCcE-EEEEeeccC
Q 031367 29 KDLPLNDVV-FVGSL-------QALGMKLLRTVDKPEYKY-TLAMLGYAE 69 (161)
Q Consensus 29 ~~~~i~Hv~-~V~Dl-------~vLG~~~~~~~~~~~g~~-~~~~l~~~~ 69 (161)
-+.+++||+ .|+|+ +.+|.+.. -..++|+. .++|+-.++
T Consensus 112 ~prGfgHIci~V~di~sac~~lkekGV~f~--Kk~~dGk~K~iaF~~dpD 159 (170)
T KOG2944|consen 112 EPRGFGHICIEVDDINSACERLKEKGVRFK--KKLKDGKMKPIAFLHDPD 159 (170)
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhCceee--ecCCCccccceeEEECCC
Confidence 347899999 99999 78888843 33455665 456665443
No 156
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=62.69 E-value=38 Score=23.99 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeee
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 122 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~ 122 (161)
++.|+++.|+|++++.+-.+ +..|.++.
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~---~~LG~~~~ 31 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYE---DVLGFRVS 31 (144)
T ss_pred eeeEEEEECCCHHHHHHHHH---hcCCCEEE
Confidence 57899999999999888775 56888764
No 157
>CHL00135 rps10 ribosomal protein S10; Validated
Probab=61.99 E-value=17 Score=24.92 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=32.6
Q ss_pred EeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCC
Q 031367 99 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 144 (161)
Q Consensus 99 ~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~ 144 (161)
....++..++.+.+.++..|+.+. +|...|....++..++-|.++
T Consensus 17 d~~~L~~~~~~I~~~~k~~~~~~~-GpipLPtk~~~~TvlrSPhv~ 61 (101)
T CHL00135 17 NHELLNSSCKKIIDTASRTNATAV-GPIPLPTKRRIYCVLRSPHVD 61 (101)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEe-CCcCCCcEEEEEEEecCCCCC
Confidence 334578888888888889999876 456666543467778999764
No 158
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=61.54 E-value=19 Score=29.66 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=21.8
Q ss_pred cCCCeeEEEEEe------CCHHHHHHHHhHHHHhcCCeee
Q 031367 89 KGNAYAQVAIST------DDVYKSAEVVNLVTQELGGKIT 122 (161)
Q Consensus 89 ~g~g~~Hiaf~V------~Di~~~~~~L~~~~~~~Gv~i~ 122 (161)
.|..++|+..+| .|++++.+.| +++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l----~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFL----KERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHH----HHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHH----HHcCCCcc
Confidence 467889999999 9999999999 58888876
No 159
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=61.12 E-value=35 Score=22.31 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=20.3
Q ss_pred EEEEEeCCHHHHHHHHhHHHHhcCCeee
Q 031367 95 QVAISTDDVYKSAEVVNLVTQELGGKIT 122 (161)
Q Consensus 95 Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~ 122 (161)
|+++.|+|++++.+-.. +-.|.+..
T Consensus 1 Hv~l~v~d~~~s~~Fy~---~~lg~~~~ 25 (113)
T cd08345 1 HITLIVKDLNKSIAFYR---DILGAELI 25 (113)
T ss_pred CeeEEECCHHHHHHHHH---HhcCCeee
Confidence 89999999999888876 45777754
No 160
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=60.96 E-value=51 Score=23.75 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeee
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 122 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~ 122 (161)
++.|+++.|+|++++.+-.. ...|.+..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~---~vLGl~~~ 30 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYR---DELGFRVS 30 (161)
T ss_pred eEEEEEEecCCHHHHHHHHH---hccCCEEE
Confidence 57899999999998877775 34788764
No 161
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=60.91 E-value=20 Score=25.25 Aligned_cols=43 Identities=23% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCC
Q 031367 101 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 144 (161)
Q Consensus 101 ~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~ 144 (161)
..++++++.+...+++.|+.+. +|...|....++...+-|.|+
T Consensus 29 ~~Ld~~~~~Ii~~ak~~g~~v~-GPipLPtK~~~~tvlrSPhg~ 71 (115)
T PTZ00039 29 KSIEKVCADIITGAKEKNLKVT-GPVRMPVKTLRITTRKSPCGE 71 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCEeE-CCccCCceeEEEEeeeCCCCC
Confidence 3478888888888899999877 566666543456778999975
No 162
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=60.88 E-value=41 Score=22.24 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=22.8
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeee
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 122 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~ 122 (161)
+++|+.|.|+|++++.+-.. +..|.+..
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~---~~lG~~~~ 30 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYR---EVWGLSVV 30 (120)
T ss_pred eeeEEEEecCCHHHHHHHHH---hCcCcEEE
Confidence 68899999999998877775 45787755
No 163
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=60.17 E-value=51 Score=22.39 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~ 123 (161)
.+.|+.+.|+|++++.+-.. +-.|.+...
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~---~vLG~~~~~ 34 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFAT---DILGLQVAE 34 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHH---hccCceecc
Confidence 56899999999998877775 346887653
No 164
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=59.80 E-value=23 Score=24.38 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCC
Q 031367 101 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 144 (161)
Q Consensus 101 ~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~ 144 (161)
..++.+++.+.+.+++.|+.+. +|.+.|....++.-.+-|-|+
T Consensus 14 ~~Ld~~~~~I~~~~k~~g~~~~-GPipLPtk~~~~tv~rSPh~~ 56 (102)
T PRK12271 14 EDLDEVCDQIKEIAEKTGVDMS-GPIPLPTKRLVVPTRKSPDGE 56 (102)
T ss_pred HHHHHHHHHHHHHHHHcCCeEE-CCCcCCceeEEEEeeeCCCCC
Confidence 3478888888888899999877 566666644567778999865
No 165
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=59.19 E-value=49 Score=21.80 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=33.2
Q ss_pred eEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEec
Q 031367 94 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 94 ~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~ 151 (161)
.|+++.|.|++++.+-.. +..|.+....+. ...++++-.++..+.+...
T Consensus 2 ~~~~l~v~d~~~s~~Fy~---~~lG~~~~~~~~------~~~~~l~~~~~~~~~l~~~ 50 (122)
T cd08354 2 LETALYVDDLEAAEAFYE---DVLGLELMLKED------RRLAFFWVGGRGMLLLFDP 50 (122)
T ss_pred eEEEEEeCCHHHHHHHHH---hccCCEEeecCC------CceEEEEcCCCcEEEEEec
Confidence 589999999998888875 568988765321 2345565555566666653
No 166
>PRK04235 hypothetical protein; Provisional
Probab=57.10 E-value=8.8 Score=29.57 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.7
Q ss_pred CceeeeecCCceEEEEec
Q 031367 2 PALFSLLSNSGSIVVVIK 19 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (161)
|-+|..|||+||+-+|.-
T Consensus 39 ~~~~TTSSCSGRIsv~~~ 56 (196)
T PRK04235 39 KNYYTTSSCSGRIGIIEA 56 (196)
T ss_pred CCeEEccCCcceEEEEec
Confidence 668999999999888876
No 167
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.08 E-value=28 Score=21.20 Aligned_cols=29 Identities=7% Similarity=0.026 Sum_probs=21.2
Q ss_pred CeeEEEEEeC--CHHHHHHHHhHHHHhcCCeeecC
Q 031367 92 AYAQVAISTD--DVYKSAEVVNLVTQELGGKITRQ 124 (161)
Q Consensus 92 g~~Hiaf~V~--Di~~~~~~L~~~~~~~Gv~i~~~ 124 (161)
+...+.|.++ |.+++.+.| +++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L----~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDL----RRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHH----HHCCCeeeCC
Confidence 4556667765 777778888 6999998754
No 168
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=56.90 E-value=50 Score=21.64 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=31.0
Q ss_pred EEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 96 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 96 iaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
|.+.|+|++++.+-.. +..|.++...+. ..+.++.. +|..+++.+..
T Consensus 2 i~l~v~d~~~a~~FY~---~~lg~~~~~~~~------~~~~~~~~-~~~~~~l~~~~ 48 (121)
T cd07251 2 ITLGVADLARSRAFYE---ALLGWKPSADSN------DGVAFFQL-GGLVLALFPRE 48 (121)
T ss_pred eeEeeCCHHHHHHHHH---HhcCceecccCC------CceEEEEc-CCeEEEEecch
Confidence 6789999988777764 455887654411 13445555 77888887643
No 169
>PRK06724 hypothetical protein; Provisional
Probab=56.78 E-value=25 Score=24.62 Aligned_cols=31 Identities=6% Similarity=0.127 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCHHHHHHHHhHHHHhcCCee
Q 031367 91 NAYAQVAISTDDVYKSAEVVNLVTQELGGKI 121 (161)
Q Consensus 91 ~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i 121 (161)
.++.|+++.|+|+++..+--.+.+-..|.+.
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~ 36 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRK 36 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEE
Confidence 4689999999999987765543333356664
No 170
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=56.45 E-value=23 Score=23.93 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=23.5
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~ 123 (161)
++.|+.+.|+|++++.+-.. +-.|.+...
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~---~vLG~~~~~ 29 (121)
T cd07244 1 GINHITLAVSDLERSVAFYV---DLLGFKLHV 29 (121)
T ss_pred CcceEEEEECCHHHHHHHHH---HhcCCEEEE
Confidence 46899999999999888886 567887653
No 171
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed
Probab=55.51 E-value=25 Score=24.00 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=31.3
Q ss_pred CCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCC
Q 031367 101 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 144 (161)
Q Consensus 101 ~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~ 144 (161)
..++.+++.+...++..|+++. +|...|....++...+-|-|+
T Consensus 16 ~~L~~~~~~i~~~a~~~~i~v~-GpipLPtk~~r~tvlrSPhv~ 58 (102)
T PRK00596 16 RLLDQSAKKIVETAKRTGAQVR-GPIPLPTKKERFTVLRSPHVN 58 (102)
T ss_pred HHHHHHHHHHHHHHHHcCCeEE-CCcCCCcEEEEEEEeeCCCCC
Confidence 3467788888777889999876 556666543467778888876
No 172
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=53.80 E-value=42 Score=23.75 Aligned_cols=29 Identities=7% Similarity=0.179 Sum_probs=23.0
Q ss_pred CCeeEEEEEeCCHHHHHHHHhHHHHhcCCeee
Q 031367 91 NAYAQVAISTDDVYKSAEVVNLVTQELGGKIT 122 (161)
Q Consensus 91 ~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~ 122 (161)
..+.|+++.|+|++++.+-.+ +-.|.++.
T Consensus 5 ~~l~Hv~l~v~Dle~s~~FY~---~vLGf~~~ 33 (143)
T cd07243 5 HRLDHCLLTGEDIAETTRFFT---DVLDFYLA 33 (143)
T ss_pred ceeCEEEEecCCHHHHHHHHH---HhcCCEEE
Confidence 357899999999998887664 45888754
No 173
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.79 E-value=50 Score=20.54 Aligned_cols=51 Identities=24% Similarity=0.193 Sum_probs=32.5
Q ss_pred EEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCc-eEEEEEECCCCCE
Q 031367 95 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLN-TKITSFVDPDGWK 145 (161)
Q Consensus 95 Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~-~~~~f~~DPDG~~ 145 (161)
-+.+.++|-.....++...+.+.|+.|..--....++. .-.+++.|++|..
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~ 54 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNP 54 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCc
Confidence 46677777666666666666899999875322111211 2367789999885
No 174
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle. This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
Probab=53.46 E-value=25 Score=23.87 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=32.0
Q ss_pred eCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCC
Q 031367 100 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 144 (161)
Q Consensus 100 V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~ 144 (161)
...++..++.+.+.++..|+++. +|...|....++...+-|-++
T Consensus 12 ~~~L~~~~~~i~~~a~~~gi~~~-gpi~LPtk~~~~tvlrSPhv~ 55 (99)
T TIGR01049 12 HRLLDQSTKKIVETAKRTGAQVK-GPIPLPTKKERYTVLRSPHVN 55 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCcee-cccCCCCEEEEEEEeeCCCCC
Confidence 34577888888878889999886 566666543457778888776
No 175
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=52.40 E-value=25 Score=22.79 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~ 123 (161)
++.|+++.|+|++++.+-.. ...|.+...
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~---~~LG~~~~~ 30 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYT---DVLGLRLVK 30 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHH---hhcCCeeee
Confidence 46899999999988877774 347877654
No 176
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=48.85 E-value=92 Score=21.88 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeec
Q 031367 90 GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 90 g~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~ 123 (161)
.-++.|+++.|.|++++.+-.. .-.|.++..
T Consensus 15 ~~~i~hv~l~v~Dl~~a~~FY~---~vLG~~~~~ 45 (150)
T TIGR00068 15 KRRLLHTMLRVGDLDKSLDFYT---EVLGMKLLR 45 (150)
T ss_pred CceEEEEEEEecCHHHHHHHHH---HhcCCEEEE
Confidence 3478999999999998888775 457888653
No 177
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=46.64 E-value=38 Score=22.49 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.0
Q ss_pred EEEEEeCCHHHHHHHHhHHHHhcCCeeec
Q 031367 95 QVAISTDDVYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 95 Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~ 123 (161)
|+++.|+|++++.+-.. +..|.++..
T Consensus 2 Hi~l~v~Dl~~s~~FY~---~~lG~~~~~ 27 (125)
T cd08357 2 HLAIPVRDLEAARAFYG---DVLGCKEGR 27 (125)
T ss_pred eEEEEeCCHHHHHHHHH---HhcCCEEee
Confidence 99999999998877775 457887653
No 178
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.60 E-value=72 Score=20.17 Aligned_cols=49 Identities=20% Similarity=0.062 Sum_probs=31.0
Q ss_pred EEEEeCCHHHHHHHHhHHHHhcCCeeecCCcc-cCCCc-eEEEEEECCCCC
Q 031367 96 VAISTDDVYKSAEVVNLVTQELGGKITRQPGS-IPGLN-TKITSFVDPDGW 144 (161)
Q Consensus 96 iaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~-~~~~~-~~~~f~~DPDG~ 144 (161)
+.+.++|-.....++...+.+.|+.+..--.. ..++. .-.+|+.|++|.
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 45566665555555555667999998863322 22322 247889999887
No 179
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=44.24 E-value=16 Score=15.91 Aligned_cols=8 Identities=63% Similarity=0.671 Sum_probs=5.7
Q ss_pred CCceeeee
Q 031367 1 MPALFSLL 8 (161)
Q Consensus 1 ~~~~~~~~ 8 (161)
|-|+|||+
T Consensus 1 m~a~~~L~ 8 (14)
T PF08255_consen 1 MKATFSLH 8 (14)
T ss_pred CceEEEEe
Confidence 56777776
No 180
>PRK11700 hypothetical protein; Provisional
Probab=40.89 E-value=1.4e+02 Score=22.94 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=33.5
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEE---ECC---CCCEEEEEec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSF---VDP---DGWKTVLVDN 151 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~---~DP---DG~~IEl~~~ 151 (161)
-..|||++|.+.+ +.+++.+.+.+.|--+... .+ ++|-+++ .-| -|..|++++-
T Consensus 39 ~~DHialR~n~~~-tAe~w~~~l~~~G~llSen--~I---NGRPI~l~~L~qPl~~~~w~I~cvEL 98 (187)
T PRK11700 39 EADHIALRCNQNE-TAERWRQGFLQCGELLSEN--II---NGRPICLFELDQPLQVGHWSIDCVEL 98 (187)
T ss_pred cCcEEEEeeCCHH-HHHHHHHHHHHhchhhhcc--cc---CCeeEEEEEcCCCceeCCcEEEEEEe
Confidence 4579999999985 4577766666777655432 11 2443333 223 4777887775
No 181
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=40.78 E-value=72 Score=19.98 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=24.8
Q ss_pred EEEEeCC----HHHHHHHHhHHHHhcCCeeec---CCcccCCCceEEEEEECCCC
Q 031367 96 VAISTDD----VYKSAEVVNLVTQELGGKITR---QPGSIPGLNTKITSFVDPDG 143 (161)
Q Consensus 96 iaf~V~D----i~~~~~~L~~~~~~~Gv~i~~---~p~~~~~~~~~~~f~~DPDG 143 (161)
+.|.++| +.++.+.+ +++|+.++. .|. ......+.|+.|-+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f----~~~~iNlt~IeSRP~--~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLF----EEFGVNLTHIESRPS--RRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHH----HHCCCcEEEEECCCC--CCCCceEEEEEEEEc
Confidence 4556554 33444444 799999775 332 222346777888777
No 182
>KOG1228 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.74 E-value=46 Score=26.18 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=19.9
Q ss_pred CceeeeecCCceEEEEecCCceeecCC
Q 031367 2 PALFSLLSNSGSIVVVIKSAYSLLFNP 28 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (161)
|-.|.-+||+||+-+++-+.+.+.++.
T Consensus 46 pd~fTTSSCSGRIsvl~qg~N~~~~k~ 72 (256)
T KOG1228|consen 46 PDFFTTSSCSGRISVLDQGINGFEVKG 72 (256)
T ss_pred CceEEcccccceEEEEeeccCcccccC
Confidence 567899999999888877744455543
No 183
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.50 E-value=66 Score=19.92 Aligned_cols=52 Identities=21% Similarity=0.048 Sum_probs=32.7
Q ss_pred EEEEeCCHHHHHHHHhHHHHhcCCeeecCCc-ccCCCc-eEEEEEECCCCCEEE
Q 031367 96 VAISTDDVYKSAEVVNLVTQELGGKITRQPG-SIPGLN-TKITSFVDPDGWKTV 147 (161)
Q Consensus 96 iaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~-~~~~~~-~~~~f~~DPDG~~IE 147 (161)
+.+..+|-.....++...+...|+.|..--. ..+++. .-.+|+.|++|..++
T Consensus 4 i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~ 57 (73)
T cd04900 4 VFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIG 57 (73)
T ss_pred EEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCC
Confidence 4556667555666666666799999886432 222222 246788999987643
No 184
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=40.00 E-value=35 Score=16.67 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=9.6
Q ss_pred EEEEEECCCCCEE
Q 031367 134 KITSFVDPDGWKT 146 (161)
Q Consensus 134 ~~~f~~DPDG~~I 146 (161)
..+.++|++|+.+
T Consensus 7 I~~i~~D~~G~lW 19 (24)
T PF07494_consen 7 IYSIYEDSDGNLW 19 (24)
T ss_dssp EEEEEE-TTSCEE
T ss_pred EEEEEEcCCcCEE
Confidence 4677899999876
No 185
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=39.36 E-value=29 Score=28.44 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=30.1
Q ss_pred EEEEEeCC-HHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecCC
Q 031367 95 QVAISTDD-VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 95 Hiaf~V~D-i~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~~ 153 (161)
.|+..|+| +..+.+-| +...-.|. |.+-.....+..-|+.+|||++||.....
T Consensus 160 aiS~evdDsl~~il~lL----r~~D~sFr--pvPh~~d~ak~~~fqn~~~y~VefLTtnr 213 (349)
T COG5397 160 AISREVDDSLPPILDLL----RSVDPSFR--PVPHRSDPAKSSAFQNRDGYRVEFLTTNR 213 (349)
T ss_pred hhhHHhcccccHHHHHH----hccCcccc--cCCccCCCccceeeecCCCeEEEEeccCc
Confidence 45666665 45544555 34443343 33211122444445999999999998643
No 186
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=38.75 E-value=1.6e+02 Score=21.67 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=37.7
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCc-ccCCCceEEEEEECC--CCCEEEEE
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG-SIPGLNTKITSFVDP--DGWKTVLV 149 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~-~~~~~~~~~~f~~DP--DG~~IEl~ 149 (161)
+-.-|.+.-+. +..-..|++.+|..|+.+.++.. ........-.|+.|+ ++++-.+.
T Consensus 57 a~tt~~l~q~~-d~Fg~aL~~aLr~~GYaVvtd~k~~~~~~~v~L~Yvid~~~g~~LyRls 116 (145)
T PRK13835 57 GTTTIKLKKDT-SPFGQALEAALKGWGYAVVTDQKTDKGPKPVELAYVVDSFDGQVLARLS 116 (145)
T ss_pred CceEEEEeecC-cHHHHHHHHHHHhcCeEEeeccccccccCccceEEEEecCCCcEEEEEE
Confidence 44678888777 67777777778999999887433 111122457888888 45555554
No 187
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=36.05 E-value=31 Score=27.02 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=16.4
Q ss_pred cCCeeecCCcccCCCceEEEEEECCCCCEE
Q 031367 117 LGGKITRQPGSIPGLNTKITSFVDPDGWKT 146 (161)
Q Consensus 117 ~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~I 146 (161)
.|+.+..-|.. +..-.++++|||||-.
T Consensus 197 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 223 (228)
T PRK06704 197 PTIDFTKLPSK---QPVLLFNVKQPSSYSC 223 (228)
T ss_pred ccceeeecccc---cceEEEEeeCCCccch
Confidence 55666544332 2234667999999854
No 188
>PRK11191 RNase E inhibitor protein; Provisional
Probab=35.56 E-value=28 Score=25.35 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=27.2
Q ss_pred EEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCC
Q 031367 98 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 144 (161)
Q Consensus 98 f~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~ 144 (161)
+...++.+.+..|..++++.|+..- +| -+||.|||+.
T Consensus 85 l~~e~I~~~~~~L~~LA~k~~g~YD------GW----GT~~~~~~~~ 121 (138)
T PRK11191 85 LNAELIDAQVEQLLALAEKFDVEYD------GW----GTYFEDPNAE 121 (138)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcc------Cc----ccceeCCCCc
Confidence 3445788888888877888887644 34 3889999984
No 189
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.78 E-value=64 Score=20.81 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=21.2
Q ss_pred CeeEEEEEeCC----HHHHHHHHhHHHHhcCCeeec
Q 031367 92 AYAQVAISTDD----VYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 92 g~~Hiaf~V~D----i~~~~~~L~~~~~~~Gv~i~~ 123 (161)
+...+.+.|+| ++++.+.| +++|+++..
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L----~~~G~~~~~ 71 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDL----KSAGYEVVD 71 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHH----HHCCCCeEE
Confidence 34578889988 67777777 699998763
No 190
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=34.56 E-value=64 Score=26.18 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=26.6
Q ss_pred HhcCCeeecCCcccCC----CceEEEEEECCCCCEEEEEecCCchhh
Q 031367 115 QELGGKITRQPGSIPG----LNTKITSFVDPDGWKTVLVDNEDFLKE 157 (161)
Q Consensus 115 ~~~Gv~i~~~p~~~~~----~~~~~~f~~DPDG~~IEl~~~~~~~~~ 157 (161)
++.-|=+...|.+... -+..++|+.||+|..+..+.+..-.++
T Consensus 220 k~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~ 266 (280)
T KOG2792|consen 220 KKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADE 266 (280)
T ss_pred HHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHH
Confidence 4444444444555321 124689999999999998877544443
No 191
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=33.19 E-value=87 Score=20.90 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=23.5
Q ss_pred eEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCC
Q 031367 94 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD 142 (161)
Q Consensus 94 ~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPD 142 (161)
-|+-|.+++. +..+.+.+.+++.|++... ........+|++|.+
T Consensus 22 YhLEi~~~~~-e~a~~l~~lL~~~~i~~k~----~~r~~~~~vYlK~~e 65 (93)
T PF14527_consen 22 YHLEIRFNDE-EFAEQLKELLNKFGINAKI----IKRKNKYVVYLKDSE 65 (93)
T ss_dssp --EEEEES-H-HHHHHHHHHHHHH----EE----EEESSEEEEEE--HH
T ss_pred eEEEEecCCH-HHHHHHHHHHHHcCCCcee----eeecCceEEEEcCHH
Confidence 4999999986 4567777777888887442 112225689998854
No 192
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=31.90 E-value=1.1e+02 Score=20.47 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=23.0
Q ss_pred EEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEEECCCCCEEEEEecC
Q 031367 95 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 95 Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+..|-|+|.+ +...| ++.+.+ +.||||++|.|.-++
T Consensus 46 ~a~FfV~D~~-tA~aL----k~vsrk-----------------I~~~dg~Ki~I~V~p 81 (88)
T PF09162_consen 46 RAQFFVEDAS-TASAL----KDVSRK-----------------ICDEDGFKISIFVNP 81 (88)
T ss_dssp EEEEEESSHH-HHHHH----HTTTTT-----------------EEBTTSBEE--EEEE
T ss_pred EEEEEeCCHH-HHHHH----HHCCCc-----------------eECCCCCEEEEEEcC
Confidence 7889999986 44666 344322 478888888877653
No 193
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=31.58 E-value=91 Score=20.62 Aligned_cols=32 Identities=22% Similarity=0.063 Sum_probs=20.1
Q ss_pred CCeeEEEEEeCCHHHHHHHHhHHHHhcCCeeec
Q 031367 91 NAYAQVAISTDDVYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 91 ~g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~ 123 (161)
.+...++|.|++.+. .+.+.+.+++.|+++..
T Consensus 49 ~a~vlvgi~v~~~~~-~~~l~~~L~~~gy~~~d 80 (91)
T PF00585_consen 49 FARVLVGIEVPDAED-LEELIERLKALGYPYED 80 (91)
T ss_dssp CSEEEEEEE-SSTHH-HHHHHHHHTSSS-EEEC
T ss_pred eeeEEEEEEeCCHHH-HHHHHHHHHHcCCCeEE
Confidence 356789999997544 34444445799998764
No 194
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=31.11 E-value=99 Score=18.57 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=18.9
Q ss_pred eEEEEEeCCHHHHHHHHhHHHHhcCCeee
Q 031367 94 AQVAISTDDVYKSAEVVNLVTQELGGKIT 122 (161)
Q Consensus 94 ~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~ 122 (161)
..+-+.++|.+++.+.| +++|+++.
T Consensus 41 ~~~rl~~~~~~~~~~~L----~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEAL----KEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHH----HHCCCEEE
Confidence 45666778887888888 68998764
No 195
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=29.03 E-value=84 Score=23.20 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=32.2
Q ss_pred eeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEEE---ECC---CCCEEEEEec
Q 031367 93 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSF---VDP---DGWKTVLVDN 151 (161)
Q Consensus 93 ~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f~---~DP---DG~~IEl~~~ 151 (161)
..|||++|.+.+ +++++.+.+.+.|--+... .+ ++|-+++ .-| -|..|++++-
T Consensus 2 ~DHialR~n~~~-~A~~w~~~l~~~G~llSen--~I---NGRPI~l~~L~qPl~~~~~~I~cvEL 60 (149)
T cd07268 2 IDHIALRVNENQ-TAERWKEGLLQCGELLSEN--EI---NGRPIALIKLEKPLQFAGWSISIVEL 60 (149)
T ss_pred CceEEEeeCCHH-HHHHHHHHHHHhchhhhcc--cc---CCeeEEEEEcCCCceeCCcEEEEEEe
Confidence 369999999985 4577766666777554422 11 2343333 222 4777777775
No 196
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=28.99 E-value=95 Score=20.13 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.6
Q ss_pred EeCCHHHHHHHHhHHHHhcCCe
Q 031367 99 STDDVYKSAEVVNLVTQELGGK 120 (161)
Q Consensus 99 ~V~Di~~~~~~L~~~~~~~Gv~ 120 (161)
..+|.|++.++|.+.+++.|..
T Consensus 23 ~~~d~d~Al~eM~e~A~~lGAn 44 (74)
T TIGR03884 23 ESDNVDEIVENLREKVKAKGGM 44 (74)
T ss_pred ecCCHHHHHHHHHHHHHHcCCC
Confidence 4459999999999888999876
No 197
>COG1590 Uncharacterized conserved protein [Function unknown]
Probab=28.99 E-value=44 Score=26.00 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=13.2
Q ss_pred CceeeeecCCceEEEEec
Q 031367 2 PALFSLLSNSGSIVVVIK 19 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (161)
|-.++.|||+||+-++.-
T Consensus 39 ~~~~TTSSCSGRI~V~e~ 56 (208)
T COG1590 39 PNYYTTSSCSGRISVMEE 56 (208)
T ss_pred CCeEEeccccceEEEEec
Confidence 456889999999655443
No 198
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=28.86 E-value=60 Score=23.25 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=22.3
Q ss_pred eEEEEEeCCHHHHHHHHhHHHHhcCCeeec
Q 031367 94 AQVAISTDDVYKSAEVVNLVTQELGGKITR 123 (161)
Q Consensus 94 ~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~ 123 (161)
.-+-++|+|+|++.+.|+ ++|+++..
T Consensus 110 Alli~r~ed~d~~~~aLe----d~gi~~~~ 135 (142)
T COG4747 110 ALLIVRVEDIDRAIKALE----DAGIKLIG 135 (142)
T ss_pred EEEEEEhhHHHHHHHHHH----HcCCeecC
Confidence 468899999999999995 99998773
No 199
>PRK03381 PII uridylyl-transferase; Provisional
Probab=28.17 E-value=2e+02 Score=26.86 Aligned_cols=56 Identities=7% Similarity=0.007 Sum_probs=40.7
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCc-eEEEEEECCCCCEEE
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLN-TKITSFVDPDGWKTV 147 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~-~~~~f~~DPDG~~IE 147 (161)
+..-|.+.+.|-..+..++...+.+.|+.|..--..+.++. .-.+||+|++|..++
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~ 762 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA 762 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCc
Confidence 45678888899777777777777899999886433332221 247899999998764
No 200
>PRK14707 hypothetical protein; Provisional
Probab=27.64 E-value=2.2e+02 Score=30.26 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=30.7
Q ss_pred CHHHHHHHHhHHHHhcCCeeecCC-ccc---CCCceEEEEEECCCCCEEEEEecC
Q 031367 102 DVYKSAEVVNLVTQELGGKITRQP-GSI---PGLNTKITSFVDPDGWKTVLVDNE 152 (161)
Q Consensus 102 Di~~~~~~L~~~~~~~Gv~i~~~p-~~~---~~~~~~~~f~~DPDG~~IEl~~~~ 152 (161)
+.-+.+..+...+.++|+..+.-- .-. +...+..+.++||+|+.+||..+.
T Consensus 2353 ~Fva~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQFHT 2407 (2710)
T PRK14707 2353 GFTAGLRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQFHT 2407 (2710)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEEecc
Confidence 443444444445579999976411 100 111234456799999999999874
No 201
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=27.11 E-value=54 Score=26.53 Aligned_cols=17 Identities=29% Similarity=0.094 Sum_probs=13.9
Q ss_pred EEEEEECCCCCEEEEEe
Q 031367 134 KITSFVDPDGWKTVLVD 150 (161)
Q Consensus 134 ~~~f~~DPDG~~IEl~~ 150 (161)
-+.+++|+||.++|-=.
T Consensus 234 FvtWi~~~dGsWLecDD 250 (275)
T PF15499_consen 234 FVTWIRDSDGSWLECDD 250 (275)
T ss_pred eEEEEEcCCCCeEeecc
Confidence 46789999999999643
No 202
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.83 E-value=1.7e+02 Score=18.14 Aligned_cols=48 Identities=13% Similarity=0.015 Sum_probs=27.0
Q ss_pred EEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCc-eEEEEEECCC-CCE
Q 031367 98 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLN-TKITSFVDPD-GWK 145 (161)
Q Consensus 98 f~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~-~~~~f~~DPD-G~~ 145 (161)
+..+|......++...+.+.|+.+...-....++. .-.+++.||+ |..
T Consensus 5 v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~ 54 (74)
T cd04925 5 LTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAP 54 (74)
T ss_pred EEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCC
Confidence 44445444445554555799999886322221221 2467789998 764
No 203
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.95 E-value=1.7e+02 Score=19.40 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=26.9
Q ss_pred eEEEEEeCCHHHHHHHHhHHHHhcCCeeec---CCcccCCCceEEEEEECCCCC
Q 031367 94 AQVAISTDDVYKSAEVVNLVTQELGGKITR---QPGSIPGLNTKITSFVDPDGW 144 (161)
Q Consensus 94 ~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~---~p~~~~~~~~~~~f~~DPDG~ 144 (161)
.-+.|.+++--....++-..++++|+.+++ .|.. .....+.|+.|-+|+
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~--~~~~~Y~FfVDieg~ 66 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSR--LNKDEYEFFINLDKK 66 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCC--CCCceEEEEEEEEcC
Confidence 457777765222222222344799999775 3332 112357777887775
No 204
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.24 E-value=1.9e+02 Score=18.27 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=19.1
Q ss_pred HHHhcCCeeec---CCcccCCCceEEEEEECCCCCE
Q 031367 113 VTQELGGKITR---QPGSIPGLNTKITSFVDPDGWK 145 (161)
Q Consensus 113 ~~~~~Gv~i~~---~p~~~~~~~~~~~f~~DPDG~~ 145 (161)
.+++.|+.+.. .|.. .....+.|+.|-+|+.
T Consensus 20 ~f~~~~inl~~IeSRP~~--~~~~~y~F~id~e~~~ 53 (74)
T cd04929 20 LFQELGINVVHIESRKSK--RRSSEFEIFVDCECDQ 53 (74)
T ss_pred HHHHCCCCEEEEEeccCC--CCCceEEEEEEEEcCH
Confidence 44799998764 3322 1224577788877764
No 205
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.38 E-value=1.7e+02 Score=17.06 Aligned_cols=25 Identities=12% Similarity=0.233 Sum_probs=16.2
Q ss_pred eEEEEEeCCHH---HHHHHHhHHHHhcCCeee
Q 031367 94 AQVAISTDDVY---KSAEVVNLVTQELGGKIT 122 (161)
Q Consensus 94 ~Hiaf~V~Di~---~~~~~L~~~~~~~Gv~i~ 122 (161)
.++.+.+.+.+ ++.+.| ++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l----~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAAL----REAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHH----HHcCCEEe
Confidence 45666666643 555666 68998875
No 206
>PF04404 ERF: ERF superfamily; InterPro: IPR007499 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF [].
Probab=23.29 E-value=2.7e+02 Score=20.01 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=35.1
Q ss_pred EEEEeCCHHHHHHHHhHHHHhcCCeeecCCccc---CCCce-EEEEEECCCC--CEEEEEe
Q 031367 96 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSI---PGLNT-KITSFVDPDG--WKTVLVD 150 (161)
Q Consensus 96 iaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~---~~~~~-~~~f~~DPDG--~~IEl~~ 150 (161)
..+.-.+++.+++.+..++.+.|+.+...+... ..+.. ..+.+.+.+| -++|+.-
T Consensus 24 ~~y~Y~~l~dI~~av~p~l~k~gl~~~~~~~~~~~~~~~~~~v~~~l~~~~g~~e~~~~~~ 84 (160)
T PF04404_consen 24 YKYKYASLDDILDAVKPALSKHGLSLTQEFEEIETEENGIVKVTTTLTHASGPSEWIEFPG 84 (160)
T ss_pred CCcccccHHHHHHHHHHHHHHcCCeEEEEeecceecccceEEEEEEEEECCCCcEEEEEEE
Confidence 334445677777777777789999887655443 12222 3466888999 6777633
No 207
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=23.18 E-value=1.1e+02 Score=17.75 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=13.2
Q ss_pred EEEEECCCCCEEEEEec
Q 031367 135 ITSFVDPDGWKTVLVDN 151 (161)
Q Consensus 135 ~~f~~DPDG~~IEl~~~ 151 (161)
...+.||||.++.+.-.
T Consensus 30 sY~y~~pdG~~~~V~Y~ 46 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVTYV 46 (52)
T ss_pred EEEEECCCCCEEEEEEE
Confidence 45589999999887643
No 208
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=22.76 E-value=1.6e+02 Score=21.72 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=13.3
Q ss_pred EEEEEECCCCCEEEEEe
Q 031367 134 KITSFVDPDGWKTVLVD 150 (161)
Q Consensus 134 ~~~f~~DPDG~~IEl~~ 150 (161)
..+|+.||+|....++.
T Consensus 156 ~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 156 AFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp SEEEEE-TTSEEEEEEC
T ss_pred cEEEEEcCCCcEEEEEc
Confidence 47999999999888764
No 209
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=22.49 E-value=99 Score=23.65 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=30.6
Q ss_pred CeeEEEEEeCCHHHHHHHHhHHHHhcCCeeecCCcccCCCceEEEE---EECC---CCCEEEEEec
Q 031367 92 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITS---FVDP---DGWKTVLVDN 151 (161)
Q Consensus 92 g~~Hiaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p~~~~~~~~~~~f---~~DP---DG~~IEl~~~ 151 (161)
-..|||++|.+.+ .++++...+.+.| ++..+-. + ++|-++ +.-| .|..|++++-
T Consensus 34 ~~DHialRvn~~~-~A~~~~~~l~~~G-~llSen~-I---NGRPI~l~~L~qPL~~~~~~I~~vEL 93 (185)
T PF06185_consen 34 EIDHIALRVNSNE-TAERWKQALLQCG-ELLSENM-I---NGRPICLFKLNQPLQFGGWSIDCVEL 93 (185)
T ss_dssp EEEEEEEE-S-HH-HHHHHHHHHTTTE-EEEEEEE-E---TTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCcEEEEecCCHH-HHHHHHHHHHHhC-hhhhhce-e---CCeeEEEEEcCCchhcCCeeEEEEEe
Confidence 4689999999985 4566655556777 4443322 2 133333 3333 5777887775
No 210
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=20.93 E-value=2.1e+02 Score=17.45 Aligned_cols=48 Identities=19% Similarity=0.055 Sum_probs=23.2
Q ss_pred EEEEeCCHHHHHHHHhHHHHhcCCeeecCC-cccCCCceEEEEEECCCC
Q 031367 96 VAISTDDVYKSAEVVNLVTQELGGKITRQP-GSIPGLNTKITSFVDPDG 143 (161)
Q Consensus 96 iaf~V~Di~~~~~~L~~~~~~~Gv~i~~~p-~~~~~~~~~~~f~~DPDG 143 (161)
+.|.++|--....++-..++++|+.+..-- .+.......+.|+.|-+|
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 466776532223333334479999977521 111111234555555555
No 211
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=20.35 E-value=2e+02 Score=21.26 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=16.8
Q ss_pred EEEEeCCHHHHHHHHhHHHHhcCCeee
Q 031367 96 VAISTDDVYKSAEVVNLVTQELGGKIT 122 (161)
Q Consensus 96 iaf~V~Di~~~~~~L~~~~~~~Gv~i~ 122 (161)
+=|.|.|.+++.++| ++.|..+.
T Consensus 6 ~K~~v~d~~~~~~~L----~~~g~~~~ 28 (174)
T TIGR00318 6 VKAKIPDKEKVVEKL----KNKGFKFI 28 (174)
T ss_pred EEEEcCCHHHHHHHH----HhcCcccc
Confidence 346678998888998 47776544
No 212
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=20.02 E-value=2.1e+02 Score=17.62 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=13.3
Q ss_pred EEEEECCCCCEEEEEecCC
Q 031367 135 ITSFVDPDGWKTVLVDNED 153 (161)
Q Consensus 135 ~~f~~DPDG~~IEl~~~~~ 153 (161)
.-++.-.|||.+++.-...
T Consensus 14 ~h~V~T~DGYiL~l~RIp~ 32 (63)
T PF04083_consen 14 EHEVTTEDGYILTLHRIPP 32 (63)
T ss_dssp EEEEE-TTSEEEEEEEE-S
T ss_pred EEEEEeCCCcEEEEEEccC
Confidence 3568899999999987544
Done!