BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031374
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VR3|A Chain A, Crystal Structure Of Acireductone Dioxygenase (13543033)
From Mus Musculus At 2.06 A Resolution
Length = 191
Score = 191 bits (484), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 87/148 (58%), Positives = 111/148 (75%)
Query: 3 LEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGY 62
++AW+ DES+ D R PH P + VSL+QL LGVLYW+L+ YEND EL+KIR+ R Y
Sbjct: 14 VQAWYXDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKXRNY 73
Query: 63 SYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKA 122
S+ D++ +C + + NYEEK+K F+ EH+H DEEIRY LEGSGYFDVRD+ D+WIRI +
Sbjct: 74 SWXDIITICKDTLPNYEEKIKXFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISXEK 133
Query: 123 GDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
GD I LPAGIYHRFTLD NYVK ++
Sbjct: 134 GDXITLPAGIYHRFTLDEKNYVKAXRLF 161
>pdb|1ZRR|A Chain A, Residual Dipolar Coupling Refinement Of Acireductone
Dioxygenase From Klebsiella
pdb|2HJI|A Chain A, Structural Model For The Fe-Containing Isoform Of
Acireductone Dioxygenase
Length = 179
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 53 LQKIREARGYSYMDLLDL---CPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVR 109
+ K+ +GY D++ L P+K E + F EH H ++E+R+ +EG+G F +
Sbjct: 61 IDKLVAEKGYQSWDVISLRADNPQK----EALREKFLNEHTHGEDEVRFFVEGAGLFCLH 116
Query: 110 DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
D+ ++ + DLI +PA H F + + ++I
Sbjct: 117 I-GDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIF 156
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 32.7 bits (73), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 46 NYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGY 105
++ + EL I + G + M ++ CPE YE + F DE IR +GS
Sbjct: 66 SFTSAPELIYIEQGNGITGM-MIPGCPE---TYESGSQQFQGGE---DERIRE--QGSRK 116
Query: 106 FDVRDE--SDQWIRIW-IKAGDLIVLPAGIYH 134
F +R + DQ +I ++ GD+ +PAG+ H
Sbjct: 117 FGMRGDRFQDQHQKIRHLREGDIFAMPAGVSH 148
>pdb|3BU7|A Chain A, Crystal Structure And Biochemical Characterization Of
Gdosp, A Gentisate 1,2-Dioxygenase From Silicibacter
Pomeroyi
pdb|3BU7|B Chain B, Crystal Structure And Biochemical Characterization Of
Gdosp, A Gentisate 1,2-Dioxygenase From Silicibacter
Pomeroyi
Length = 394
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 89 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH 134
H HA +R+ +EGSG + + D ++ + A D ++ P G +H
Sbjct: 139 HRHAASALRFIMEGSGAYTIVDGH----KVELGANDFVLTPNGTWH 180
>pdb|1Y3T|A Chain A, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
pdb|1Y3T|B Chain B, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
Length = 337
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 95 EIRYCLEGSGYFDVRDESDQWI---RIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS 151
E YCLEG + W I + GD + +PA H + LD S+Y K++ +L
Sbjct: 241 ETFYCLEG--------QMTMWTDGQEIQLNPGDFLHVPANTVHSYRLD-SHYTKMVGVLV 291
Query: 152 YGV 154
G+
Sbjct: 292 PGL 294
>pdb|2H0V|A Chain A, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
pdb|2H0V|B Chain B, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
Length = 338
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 95 EIRYCLEGSGYFDVRDESDQWI---RIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS 151
E YCLEG + W I + GD + +PA H + LD S+Y K + +L
Sbjct: 242 ETFYCLEG--------QXTXWTDGQEIQLNPGDFLHVPANTVHSYRLD-SHYTKXVGVLV 292
Query: 152 YGV 154
G+
Sbjct: 293 PGL 295
>pdb|3O6X|A Chain A, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|B Chain B, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|C Chain C, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|D Chain D, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|E Chain E, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|F Chain F, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
Length = 729
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 60 RGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIW 119
R ++ +L + P ++T KL ++Y H+ ++++ L Y V D +++ I
Sbjct: 5 RFFALQELSNRKPLEITTPSNKLSDYYASHVFDRKKMQEYLPKEAYKAVVDATEKGTPIS 64
Query: 120 IKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQSD 159
+ DLI + + +L+ ++Y Q L+ G + D
Sbjct: 65 REMADLIANGMKSWAK-SLNVTHYTHWFQPLTDGTAEKHD 103
>pdb|3FE5|A Chain A, Crystal Structure Of 3-Hydroxyanthranilate 3,4-Dioxygenase
From Bovine Kidney
Length = 285
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 89 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH 134
HI EE+ Y LEG V E + + I+ G++ +LPAG+ H
Sbjct: 46 HIEEGEEVFYQLEGDMLLRVL-ERGKHRDVVIRQGEIFLLPAGVPH 90
>pdb|3NST|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans
pdb|3NVC|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Salicylate
pdb|3NW4|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Gentisate
Length = 368
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 88 EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
EH H+ R+ +EG G + V + + + GDL++ P +H DT + +
Sbjct: 118 EHRHSQNAFRFVVEGEGVWTVVNGDP----VRMSRGDLLLTPGWCFHGHMNDTDQPMAWI 173
Query: 148 QILSYGVQRQSD 159
L +Q D
Sbjct: 174 DGLDIPFSQQMD 185
>pdb|4FAH|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans A85h Mutant
Length = 367
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 88 EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
EH H+ R+ +EG G + V + + + GDL++ P +H DT + +
Sbjct: 118 EHRHSQNAFRFVVEGEGVWTVVNGDP----VRMSRGDLLLTPGWCFHGHMNDTDQPMAWI 173
Query: 148 QILSYGVQRQSD 159
L +Q D
Sbjct: 174 DGLDIPFSQQMD 185
>pdb|2PHD|A Chain A, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|B Chain B, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|C Chain C, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|D Chain D, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|3NJZ|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Salicylate
pdb|3NKT|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Naphthoate
pdb|3NL1|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Gentisate
Length = 368
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 88 EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
EH H+ R+ +EG G + V + + + GDL++ P +H DT + +
Sbjct: 118 EHRHSQNAFRFVVEGEGVWTVVNGDP----VRMSRGDLLLTPGWCFHGHMNDTDQPMAWI 173
Query: 148 QILSYGVQRQSD 159
L +Q D
Sbjct: 174 DGLDIPFSQQMD 185
>pdb|4FAG|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant In
Complex With Gentisate
pdb|4FBF|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant
Length = 367
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 88 EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
EH H+ R+ +EG G + V + + + GDL++ P +H DT + +
Sbjct: 118 EHRHSQNAFRFVVEGEGVWTVVNGDP----VRMSRGDLLLTPGWCFHGHMNDTDQPMAWI 173
Query: 148 QILSYGVQRQSD 159
L +Q D
Sbjct: 174 DGLDIPFSQQMD 185
>pdb|1ZVF|A Chain A, The Crystal Structure Of 3-Hydroxyanthranilate 3,4-
Dioxygenase From Saccharomyces Cerevisiae
pdb|1ZVF|B Chain B, The Crystal Structure Of 3-Hydroxyanthranilate 3,4-
Dioxygenase From Saccharomyces Cerevisiae
Length = 176
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 89 HIHADEEIRYCLEGSGYFDVRDESD---QWIRIWIKAGDLIVLPAGIYH 134
HI+ E Y +GS V DE+D ++I I I GD +LP + H
Sbjct: 50 HINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPH 98
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 81 KLKNFYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR 135
K++ + H HAD +E+ EG+ RD++ I ++AG+ V+P G+ H+
Sbjct: 37 KVEGEFVWHEHADTDEVFIVXEGTLQIAFRDQN-----ITLQAGEXYVIPKGVEHK 87
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 18 PHHLNPKQFVSLDQLAELGVLYWRLNP---KNYENDEELQKIREARGYSYMDLLDLCPEK 74
P L F + + GV+ W + + Y+ Q ++ Y+D D CPE+
Sbjct: 201 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPER 260
Query: 75 VTN 77
VT+
Sbjct: 261 VTD 263
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 18 PHHLNPKQFVSLDQLAELGVLYWRLNP---KNYENDEELQKIREARGYSYMDLLDLCPEK 74
P L F + + GV+ W + + Y+ Q ++ Y+D D CPE+
Sbjct: 201 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPER 260
Query: 75 VTN 77
VT+
Sbjct: 261 VTD 263
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 18 PHHLNPKQFVSLDQLAELGVLYWRLNP---KNYENDEELQKIREARGYSYMDLLDLCPEK 74
P L F + + GV+ W + + Y+ Q ++ Y+D D CPE+
Sbjct: 198 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPER 257
Query: 75 VTN 77
VT+
Sbjct: 258 VTD 260
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 18 PHHLNPKQFVSLDQLAELGVLYWRLNP---KNYENDEELQKIREARGYSYMDLLDLCPEK 74
P L F + + GV+ W + + Y+ Q ++ Y+D D CPE+
Sbjct: 201 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPER 260
Query: 75 VTN 77
VT+
Sbjct: 261 VTD 263
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 18 PHHLNPKQFVSLDQLAELGVLYWRLNP---KNYENDEELQKIREARGYSYMDLLDLCPEK 74
P L F + + GV+ W + + Y+ Q ++ Y+D D CPE+
Sbjct: 202 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPER 261
Query: 75 VTN 77
VT+
Sbjct: 262 VTD 264
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 18 PHHLNPKQFVSLDQLAELGVLYWRLNP---KNYENDEELQKIREARGYSYMDLLDLCPEK 74
P L F + + GV+ W + + Y+ Q ++ Y+D D CPE+
Sbjct: 201 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPER 260
Query: 75 VTN 77
VT+
Sbjct: 261 VTD 263
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 18 PHHLNPKQFVSLDQLAELGVLYWRLNP---KNYENDEELQKIREARGYSYMDLLDLCPEK 74
P L F + + GV+ W + + Y+ Q ++ Y+D D CPE+
Sbjct: 201 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPER 260
Query: 75 VTN 77
VT+
Sbjct: 261 VTD 263
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 18 PHHLNPKQFVSLDQLAELGVLYWRLNP---KNYENDEELQKIREARGYSYMDLLDLCPEK 74
P L F + + GV+ W + + Y+ Q ++ Y+D D CPE+
Sbjct: 200 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPER 259
Query: 75 VTN 77
VT+
Sbjct: 260 VTD 262
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 27 VSLDQLAELGVLYWRLNPKNYENDEE 52
++LD L LG++Y L P+N DEE
Sbjct: 138 LALDHLHSLGIIYRDLKPENILLDEE 163
>pdb|2QNK|A Chain A, Crystal Structure Of Human 3-hydroxyanthranilate
3,4-dioxygenase
Length = 286
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 89 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH 134
HI EE+ Y LEG V ++ + I+ G++ +LPA + H
Sbjct: 47 HIEEGEEVFYQLEGDXVLRVLEQGKH-RDVVIRQGEIFLLPARVPH 91
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 27 VSLDQLAELGVLYWRLNPKNYENDEE 52
++LD L LG++Y L P+N DEE
Sbjct: 137 LALDHLHSLGIIYRDLKPENILLDEE 162
>pdb|1HN0|A Chain A, Crystal Structure Of Chondroitin Abc Lyase I From Proteus
Vulgaris At 1.9 Angstroms Resolution
Length = 1021
Score = 26.9 bits (58), Expect = 5.1, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 62 YSYMDLLDLCPEKVTNYEEKLK--NFYTEHIHADEEIRYCLE------GSGYFDVRDESD 113
Y YM LD PEK+ +K + N + + D+++ L+ G ++ D
Sbjct: 873 YEYMVFLDATPEKMGEMAQKFRENNGLYQVLRKDKDVHIILDKLSNVTGYAFYQPASIED 932
Query: 114 QWIR 117
+WI+
Sbjct: 933 KWIK 936
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 27 VSLDQLAELGVLYWRLNPKNYENDEE 52
++LD L LG++Y L P+N DEE
Sbjct: 137 LALDHLHSLGIIYRDLKPENILLDEE 162
>pdb|2ERB|A Chain A, Agamobp1, And Odorant Binding Protein From Anopheles
Gambiae Complexed With Peg
pdb|2ERB|B Chain B, Agamobp1, And Odorant Binding Protein From Anopheles
Gambiae Complexed With Peg
pdb|3N7H|A Chain A, Crystal Structure Of Odorant Binding Protein 1 From
Anopheles Gambiae (Agamobp1) With Deet
(N,N-Diethyl-Meta-Toluamide) And Peg
pdb|3N7H|B Chain B, Crystal Structure Of Odorant Binding Protein 1 From
Anopheles Gambiae (Agamobp1) With Deet
(N,N-Diethyl-Meta-Toluamide) And Peg
pdb|4FQT|A Chain A, Structure Of Agamobp1 Bound To 6-methyl-5-hepten-2-one
pdb|4FQT|B Chain B, Structure Of Agamobp1 Bound To 6-methyl-5-hepten-2-one
Length = 125
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 67 LLDLCPEKVTNYEEKLKNFYTEHIHADEEIR 97
L D+C K EE +K F E IH DE+++
Sbjct: 22 LHDICLGKTGVTEEAIKKFSDEEIHEDEKLK 52
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 27 VSLDQLAELGVLYWRLNPKNYENDEE 52
+ LD L LG++Y L P+N DEE
Sbjct: 141 LGLDHLHSLGIIYRDLKPENILLDEE 166
>pdb|1FVU|B Chain B, Crystal Structure Of Botrocetin
pdb|1FVU|D Chain D, Crystal Structure Of Botrocetin
pdb|1IJK|C Chain C, The Von Willebrand Factor Mutant (I546v) A1 Domain-
Botrocetin Complex
pdb|1U0N|C Chain C, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
pdb|1U0O|B Chain B, The Mouse Von Willebrand Factor A1-Botrocetin Complex
Length = 125
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 71 CPEKVTNYEEKLKNFYTEHIHADEEIRYCLE 101
CP ++YE F+ E +H D+ +C E
Sbjct: 2 CPPDWSSYEGHCYRFFKEWMHWDDAEEFCTE 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,412,331
Number of Sequences: 62578
Number of extensions: 234473
Number of successful extensions: 671
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 49
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)