Query 031374
Match_columns 160
No_of_seqs 223 out of 1272
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 13:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2107 Uncharacterized conser 100.0 2.7E-57 5.9E-62 347.2 10.3 157 2-158 1-158 (179)
2 PF03079 ARD: ARD/ARD' family; 100.0 1.1E-45 2.3E-50 285.0 12.1 154 4-157 1-156 (157)
3 COG1791 Uncharacterized conser 100.0 9.5E-38 2.1E-42 240.8 13.4 148 2-158 1-160 (181)
4 PF07883 Cupin_2: Cupin domain 99.3 1.3E-11 2.9E-16 81.2 7.1 61 85-150 10-71 (71)
5 COG1917 Uncharacterized conser 99.2 9.4E-11 2E-15 86.8 7.7 65 83-152 53-118 (131)
6 COG0662 {ManC} Mannose-6-phosp 99.2 1.1E-10 2.4E-15 86.7 7.9 65 87-158 50-115 (127)
7 PRK04190 glucose-6-phosphate i 99.0 2.8E-09 6.2E-14 84.8 11.5 86 63-152 68-156 (191)
8 PF02311 AraC_binding: AraC-li 99.0 9E-10 2E-14 79.0 7.9 57 84-145 14-70 (136)
9 smart00835 Cupin_1 Cupin. This 99.0 3.8E-09 8.2E-14 79.8 10.3 70 85-154 42-113 (146)
10 PRK13290 ectC L-ectoine syntha 99.0 1.9E-09 4E-14 80.4 8.3 63 86-157 48-112 (125)
11 TIGR03404 bicupin_oxalic bicup 99.0 6.3E-09 1.4E-13 90.1 12.0 69 84-152 256-325 (367)
12 TIGR03214 ura-cupin putative a 99.0 4.3E-09 9.4E-14 87.1 9.8 74 64-152 180-253 (260)
13 PF00190 Cupin_1: Cupin; Inte 98.9 6.2E-09 1.3E-13 78.4 9.3 71 84-154 45-123 (144)
14 PRK09943 DNA-binding transcrip 98.8 1.4E-08 3.1E-13 79.4 8.4 61 86-151 121-181 (185)
15 COG3837 Uncharacterized conser 98.8 4.6E-08 1E-12 75.3 8.6 76 65-154 44-122 (161)
16 TIGR03404 bicupin_oxalic bicup 98.8 5.8E-08 1.3E-12 84.1 10.3 67 85-152 79-145 (367)
17 COG2140 Thermophilic glucose-6 98.7 7.5E-08 1.6E-12 77.4 9.3 69 84-152 91-162 (209)
18 TIGR03037 anthran_nbaC 3-hydro 98.7 6.8E-08 1.5E-12 74.8 7.8 56 86-142 41-96 (159)
19 PRK13500 transcriptional activ 98.7 4.4E-08 9.4E-13 82.3 6.9 56 85-145 60-115 (312)
20 PRK13501 transcriptional activ 98.7 4.2E-08 9.2E-13 81.1 6.4 51 86-141 31-81 (290)
21 PRK13264 3-hydroxyanthranilate 98.7 8.3E-08 1.8E-12 75.5 7.4 56 85-141 46-101 (177)
22 PRK10371 DNA-binding transcrip 98.7 4.9E-08 1.1E-12 81.9 6.4 53 86-143 39-91 (302)
23 PRK11171 hypothetical protein; 98.7 1.3E-07 2.8E-12 78.5 8.8 55 89-148 201-255 (266)
24 PF06560 GPI: Glucose-6-phosph 98.6 2.1E-07 4.6E-12 73.6 9.3 88 58-151 46-145 (182)
25 PRK10296 DNA-binding transcrip 98.6 1.1E-07 2.4E-12 77.9 7.8 51 84-139 34-84 (278)
26 PRK13503 transcriptional activ 98.6 7.9E-08 1.7E-12 78.3 5.1 53 84-141 26-78 (278)
27 PRK13502 transcriptional activ 98.6 1.8E-07 3.9E-12 76.7 6.8 51 86-141 31-81 (282)
28 TIGR01479 GMP_PMI mannose-1-ph 98.5 4.1E-07 8.8E-12 80.9 8.8 62 86-152 389-451 (468)
29 PRK15457 ethanolamine utilizat 98.5 3.9E-07 8.4E-12 74.3 7.7 45 89-138 171-215 (233)
30 TIGR02297 HpaA 4-hydroxyphenyl 98.5 2.8E-07 6E-12 75.6 6.9 58 86-148 36-94 (287)
31 PRK15460 cpsB mannose-1-phosph 98.5 7E-07 1.5E-11 79.9 9.7 61 87-152 399-460 (478)
32 PRK11171 hypothetical protein; 98.4 2.5E-06 5.5E-11 70.8 9.9 54 92-150 82-135 (266)
33 PF02041 Auxin_BP: Auxin bindi 98.4 2.3E-06 5E-11 65.7 8.5 71 85-155 56-131 (167)
34 PF01050 MannoseP_isomer: Mann 98.4 2.4E-06 5.3E-11 65.7 8.8 78 59-152 60-138 (151)
35 TIGR03214 ura-cupin putative a 98.3 3.3E-06 7.1E-11 70.0 9.4 57 88-149 74-131 (260)
36 PLN00212 glutelin; Provisional 98.3 3.5E-06 7.6E-11 75.6 8.9 69 84-152 91-184 (493)
37 COG4101 Predicted mannose-6-ph 98.3 4E-06 8.7E-11 62.3 7.6 74 64-149 47-121 (142)
38 COG4297 Uncharacterized protei 98.1 1.1E-05 2.4E-10 61.3 6.5 81 51-148 35-116 (163)
39 COG3435 Gentisate 1,2-dioxygen 98.1 7.6E-06 1.6E-10 69.2 5.6 59 83-145 102-160 (351)
40 TIGR02272 gentisate_1_2 gentis 98.0 1.4E-05 3E-10 68.7 6.9 57 83-144 91-148 (335)
41 PLN00212 glutelin; Provisional 98.0 7.7E-05 1.7E-09 67.1 11.0 70 83-153 358-429 (493)
42 TIGR02451 anti_sig_ChrR anti-s 97.9 1.9E-05 4.2E-10 63.7 5.9 68 64-150 128-195 (215)
43 PF06249 EutQ: Ethanolamine ut 97.9 2.9E-05 6.3E-10 59.9 6.1 57 92-157 94-151 (152)
44 TIGR02272 gentisate_1_2 gentis 97.9 9.6E-05 2.1E-09 63.6 9.6 98 50-155 215-324 (335)
45 PF12973 Cupin_7: ChrR Cupin-l 97.8 6.6E-05 1.4E-09 52.3 6.5 58 65-141 26-83 (91)
46 PF05899 Cupin_3: Protein of u 97.7 0.00011 2.3E-09 49.8 6.0 42 93-138 25-66 (74)
47 COG4766 EutQ Ethanolamine util 97.7 0.00014 3.1E-09 56.1 7.1 84 65-158 89-175 (176)
48 PRK10572 DNA-binding transcrip 97.7 0.00014 3.1E-09 59.8 6.9 62 87-153 43-106 (290)
49 PF05523 FdtA: WxcM-like, C-te 97.5 0.00059 1.3E-08 51.1 8.1 65 86-153 46-112 (131)
50 PF06052 3-HAO: 3-hydroxyanthr 97.5 0.00073 1.6E-08 51.9 8.1 54 86-140 46-99 (151)
51 PF12852 Cupin_6: Cupin 97.4 0.0003 6.5E-09 54.6 5.6 45 94-141 36-80 (186)
52 COG3435 Gentisate 1,2-dioxygen 97.4 0.00039 8.4E-09 59.1 6.5 99 49-155 225-336 (351)
53 COG3450 Predicted enzyme of th 97.1 0.0013 2.8E-08 48.6 5.3 47 87-137 56-103 (116)
54 PF11699 CENP-C_C: Mif2/CENP-C 97.1 0.0076 1.7E-07 42.1 8.8 71 62-146 11-81 (85)
55 PF04209 HgmA: homogentisate 1 96.9 0.0028 6.1E-08 56.1 6.9 57 91-152 144-200 (424)
56 TIGR01015 hmgA homogentisate 1 96.6 0.01 2.2E-07 52.6 7.9 56 91-151 146-201 (429)
57 PRK09685 DNA-binding transcrip 96.6 0.008 1.7E-07 49.5 6.8 50 93-147 71-120 (302)
58 PF06339 Ectoine_synth: Ectoin 96.5 0.025 5.4E-07 42.3 8.4 60 88-152 50-109 (126)
59 PRK05341 homogentisate 1,2-dio 96.4 0.016 3.4E-07 51.5 7.9 56 91-151 152-208 (438)
60 COG3257 GlxB Uncharacterized p 96.3 0.0092 2E-07 48.8 5.3 69 65-147 184-252 (264)
61 PF14525 AraC_binding_2: AraC- 96.3 0.022 4.9E-07 42.3 7.2 52 93-149 55-106 (172)
62 PLN02658 homogentisate 1,2-dio 96.2 0.023 5E-07 50.5 7.8 56 91-151 145-201 (435)
63 PF02373 JmjC: JmjC domain, hy 96.1 0.014 3E-07 41.2 5.0 29 113-141 78-106 (114)
64 COG3257 GlxB Uncharacterized p 96.1 0.026 5.5E-07 46.3 7.0 46 93-143 83-128 (264)
65 PF02678 Pirin: Pirin; InterP 95.6 0.068 1.5E-06 38.8 7.0 63 84-150 40-106 (107)
66 PF00908 dTDP_sugar_isom: dTDP 95.4 0.15 3.2E-06 40.1 8.9 60 83-142 53-124 (176)
67 PF13621 Cupin_8: Cupin-like d 95.3 0.051 1.1E-06 43.0 6.0 69 84-152 142-247 (251)
68 TIGR01221 rmlC dTDP-4-dehydror 95.3 0.19 4.2E-06 39.5 9.0 60 83-142 54-124 (176)
69 KOG2757 Mannose-6-phosphate is 95.1 0.054 1.2E-06 47.3 6.0 55 92-152 352-407 (411)
70 PF08007 Cupin_4: Cupin superf 95.0 0.18 3.9E-06 42.8 8.7 56 85-140 127-200 (319)
71 KOG3995 3-hydroxyanthranilate 94.5 0.052 1.1E-06 44.3 4.1 66 87-153 47-124 (279)
72 COG3508 HmgA Homogentisate 1,2 93.9 0.29 6.2E-06 42.8 7.6 46 92-142 145-190 (427)
73 PF14499 DUF4437: Domain of un 93.4 0.085 1.8E-06 43.8 3.4 53 85-141 48-100 (251)
74 PF07385 DUF1498: Protein of u 93.3 0.19 4.1E-06 41.1 5.3 26 117-142 155-180 (225)
75 COG1898 RfbC dTDP-4-dehydrorha 93.1 0.8 1.7E-05 36.1 8.4 61 83-143 55-125 (173)
76 PF04962 KduI: KduI/IolB famil 92.9 0.22 4.7E-06 41.5 5.2 53 85-138 165-231 (261)
77 PRK15131 mannose-6-phosphate i 92.2 0.43 9.4E-06 41.9 6.4 42 92-138 338-379 (389)
78 TIGR00218 manA mannose-6-phosp 92.1 0.42 9.2E-06 40.2 6.0 40 92-136 252-291 (302)
79 COG1482 ManA Phosphomannose is 91.9 0.48 1E-05 40.6 6.1 45 91-140 258-302 (312)
80 COG1741 Pirin-related protein 91.4 0.8 1.7E-05 38.6 6.8 71 83-157 54-129 (276)
81 PF13759 2OG-FeII_Oxy_5: Putat 91.4 0.65 1.4E-05 32.5 5.5 59 83-141 10-91 (101)
82 COG3822 ABC-type sugar transpo 91.2 0.36 7.7E-06 38.9 4.3 27 116-142 153-179 (225)
83 PRK12335 tellurite resistance 89.7 2.3 4.9E-05 35.3 8.1 69 81-149 19-91 (287)
84 COG1482 ManA Phosphomannose is 89.4 0.3 6.6E-06 41.8 2.7 23 117-139 159-181 (312)
85 PF06865 DUF1255: Protein of u 89.2 2 4.3E-05 30.6 6.3 51 88-141 35-86 (94)
86 PRK10579 hypothetical protein; 89.2 2.6 5.6E-05 30.0 6.9 46 93-141 41-86 (94)
87 TIGR00218 manA mannose-6-phosp 89.1 0.21 4.6E-06 42.0 1.6 20 117-136 152-171 (302)
88 PF09313 DUF1971: Domain of un 87.5 3.7 8.1E-05 28.4 6.7 48 94-141 26-75 (82)
89 PRK15131 mannose-6-phosphate i 86.5 0.62 1.3E-05 41.0 2.9 24 117-140 238-261 (389)
90 PHA02890 hypothetical protein; 85.9 4.6 9.9E-05 33.9 7.5 57 96-154 95-151 (278)
91 PF06719 AraC_N: AraC-type tra 85.0 7.4 0.00016 29.4 7.9 56 92-152 22-80 (155)
92 PHA02984 hypothetical protein; 84.4 5.3 0.00012 33.7 7.3 58 96-154 96-154 (286)
93 PF05726 Pirin_C: Pirin C-term 83.7 3.5 7.6E-05 29.1 5.3 53 93-154 20-72 (104)
94 PF06172 Cupin_5: Cupin superf 82.5 18 0.00039 27.3 9.0 62 84-145 52-120 (139)
95 PF14499 DUF4437: Domain of un 80.9 0.88 1.9E-05 37.8 1.5 61 86-149 184-244 (251)
96 PLN02288 mannose-6-phosphate i 80.7 2.6 5.6E-05 37.2 4.4 39 91-132 352-390 (394)
97 PRK11753 DNA-binding transcrip 80.3 13 0.00028 28.5 7.9 57 93-149 38-99 (211)
98 COG2850 Uncharacterized conser 79.8 1.1 2.3E-05 39.3 1.7 84 50-140 100-203 (383)
99 PLN02288 mannose-6-phosphate i 79.7 1.6 3.4E-05 38.6 2.7 25 117-141 252-276 (394)
100 PRK09391 fixK transcriptional 79.1 11 0.00025 29.9 7.4 57 93-149 56-113 (230)
101 PF05721 PhyH: Phytanoyl-CoA d 77.6 2.7 5.8E-05 31.6 3.1 29 113-141 177-205 (211)
102 cd00038 CAP_ED effector domain 75.9 10 0.00022 25.0 5.4 57 93-149 35-95 (115)
103 PRK15186 AraC family transcrip 75.9 8.4 0.00018 32.5 5.9 44 94-141 39-82 (291)
104 PRK10202 ebgC cryptic beta-D-g 74.4 19 0.00041 27.4 7.0 49 89-137 60-127 (149)
105 PF00027 cNMP_binding: Cyclic 71.9 15 0.00033 23.5 5.4 57 93-149 17-77 (91)
106 PF11142 DUF2917: Protein of u 71.5 7.7 0.00017 25.3 3.7 40 96-138 19-58 (63)
107 PRK13918 CRP/FNR family transc 71.3 22 0.00047 27.1 6.9 36 94-129 27-63 (202)
108 PF05962 HutD: HutD; InterPro 70.8 5.9 0.00013 31.1 3.6 49 93-148 135-183 (184)
109 PRK00924 5-keto-4-deoxyuronate 70.7 14 0.00031 31.2 6.0 57 85-141 190-250 (276)
110 COG3123 Uncharacterized protei 67.8 21 0.00046 25.1 5.4 44 93-139 41-84 (94)
111 TIGR02466 conserved hypothetic 67.3 19 0.00042 28.8 6.0 58 82-139 105-185 (201)
112 cd06919 Asp_decarbox Aspartate 66.2 3.7 8.1E-05 30.1 1.5 31 97-131 56-89 (111)
113 smart00100 cNMP Cyclic nucleot 65.4 24 0.00051 23.2 5.4 37 93-129 35-72 (120)
114 PRK00924 5-keto-4-deoxyuronate 65.0 23 0.0005 29.9 6.2 41 90-135 70-111 (276)
115 PF04962 KduI: KduI/IolB famil 63.9 33 0.00072 28.5 6.9 47 90-141 44-99 (261)
116 KOG3706 Uncharacterized conser 63.5 2.7 5.9E-05 38.3 0.4 62 86-147 331-412 (629)
117 PRK09392 ftrB transcriptional 63.1 23 0.00049 27.9 5.6 57 93-149 48-107 (236)
118 TIGR00223 panD L-aspartate-alp 61.7 4.8 0.0001 30.1 1.4 31 97-131 57-90 (126)
119 PRK05449 aspartate alpha-decar 60.8 5.2 0.00011 30.0 1.4 31 97-131 57-90 (126)
120 PF04074 DUF386: Domain of unk 59.9 71 0.0015 23.9 7.8 59 87-145 62-144 (153)
121 PRK10402 DNA-binding transcrip 59.3 44 0.00095 26.3 6.7 37 93-129 49-86 (226)
122 TIGR03697 NtcA_cyano global ni 58.4 56 0.0012 24.5 6.9 35 93-127 11-46 (193)
123 PF01238 PMI_typeI: Phosphoman 57.6 5.6 0.00012 34.6 1.3 24 117-140 251-274 (373)
124 PF13464 DUF4115: Domain of un 56.3 55 0.0012 21.5 7.6 47 99-145 4-51 (77)
125 COG3806 ChrR Transcriptional a 55.4 19 0.00042 29.2 3.9 55 84-147 139-193 (216)
126 COG0664 Crp cAMP-binding prote 51.2 58 0.0013 24.2 6.0 55 95-149 43-101 (214)
127 TIGR02408 ectoine_ThpD ectoine 50.2 16 0.00036 30.1 2.9 24 116-139 211-234 (277)
128 PRK11161 fumarate/nitrate redu 49.0 87 0.0019 24.4 6.9 36 93-128 55-91 (235)
129 PF05118 Asp_Arg_Hydrox: Aspar 48.7 44 0.00095 25.5 4.9 36 101-141 114-149 (163)
130 PF00829 Ribosomal_L21p: Ribos 48.1 13 0.00028 26.3 1.7 21 104-129 3-23 (96)
131 PHA00672 hypothetical protein 47.5 79 0.0017 24.0 5.9 57 85-147 59-115 (152)
132 PLN02868 acyl-CoA thioesterase 47.3 1E+02 0.0022 26.9 7.6 36 93-128 49-84 (413)
133 PRK05467 Fe(II)-dependent oxyg 47.1 55 0.0012 26.7 5.5 32 116-147 141-173 (226)
134 PF02261 Asp_decarbox: Asparta 46.1 7.8 0.00017 28.7 0.3 30 97-130 57-89 (116)
135 TIGR01762 chlorin-enz chlorina 46.0 47 0.001 27.8 5.1 40 114-153 207-250 (288)
136 PF12851 Tet_JBP: Oxygenase do 45.4 41 0.00089 26.1 4.3 38 103-140 113-153 (171)
137 COG3097 Uncharacterized protei 45.3 41 0.00089 24.1 3.9 46 99-155 16-61 (106)
138 PRK05573 rplU 50S ribosomal pr 44.3 30 0.00064 24.8 3.1 22 104-130 3-24 (103)
139 PTZ00273 oxidase reductase; Pr 43.7 42 0.00091 28.3 4.5 66 87-153 196-276 (320)
140 KOG1417 Homogentisate 1,2-diox 43.1 79 0.0017 27.5 5.9 36 117-152 174-209 (446)
141 PF13640 2OG-FeII_Oxy_3: 2OG-F 40.7 47 0.001 22.4 3.6 20 120-139 66-86 (100)
142 COG0853 PanD Aspartate 1-decar 40.1 11 0.00025 28.1 0.4 27 101-131 63-89 (126)
143 PF06577 DUF1134: Protein of u 39.8 51 0.0011 25.7 4.0 49 100-157 109-158 (160)
144 PF04622 ERG2_Sigma1R: ERG2 an 39.5 1.4E+02 0.0031 24.3 6.7 50 91-143 117-166 (216)
145 cd00248 Mth938-like Mth938-lik 38.6 30 0.00065 24.7 2.4 27 102-136 6-32 (109)
146 PF01987 AIM24: Mitochondrial 38.2 40 0.00088 26.4 3.4 40 97-137 133-172 (215)
147 TIGR03027 pepcterm_export puta 36.0 25 0.00054 26.7 1.8 16 117-132 149-164 (165)
148 COG2731 EbgC Beta-galactosidas 34.2 1.3E+02 0.0028 23.2 5.4 45 93-137 69-133 (154)
149 TIGR00061 L21 ribosomal protei 34.1 53 0.0011 23.5 3.1 21 104-129 2-22 (101)
150 PF02080 TrkA_C: TrkA-C domain 34.0 34 0.00074 21.5 2.0 30 93-128 27-56 (71)
151 TIGR00568 alkb DNA alkylation 32.6 1.1E+02 0.0024 23.7 4.9 37 100-136 128-166 (169)
152 KOG4680 Uncharacterized conser 32.3 73 0.0016 24.5 3.7 33 117-149 96-140 (153)
153 PRK00364 groES co-chaperonin G 30.9 88 0.0019 21.9 3.8 39 101-142 43-81 (95)
154 COG3145 AlkB Alkylated DNA rep 30.7 77 0.0017 25.4 3.8 38 100-137 139-178 (194)
155 KOG1641 Mitochondrial chaperon 30.5 1.2E+02 0.0026 22.0 4.4 51 93-146 43-93 (104)
156 PRK10856 cytoskeletal protein 30.5 1.8E+02 0.004 24.9 6.4 59 94-154 252-311 (331)
157 PF00054 Laminin_G_1: Laminin 30.4 1.9E+02 0.004 20.7 5.6 55 90-149 17-71 (131)
158 PLN02156 gibberellin 2-beta-di 30.3 1.7E+02 0.0037 25.0 6.2 65 87-151 198-277 (335)
159 cd05560 Xcc1710_like Xcc1710_l 30.1 55 0.0012 23.4 2.7 26 102-135 6-32 (109)
160 PF01067 Calpain_III: Calpain 29.7 42 0.00091 24.3 2.1 34 117-155 111-144 (147)
161 PRK15401 alpha-ketoglutarate-d 27.9 1.3E+02 0.0029 24.3 4.8 38 100-137 149-188 (213)
162 PLN02403 aminocyclopropanecarb 27.4 1.7E+02 0.0038 24.6 5.6 64 88-152 172-252 (303)
163 COG0361 InfA Translation initi 26.7 1.3E+02 0.0029 20.4 3.9 14 117-130 44-57 (75)
164 PF13532 2OG-FeII_Oxy_2: 2OG-F 26.6 1.9E+02 0.004 21.8 5.3 48 85-132 109-164 (194)
165 PLN03192 Voltage-dependent pot 26.4 1.5E+02 0.0033 28.3 5.6 57 93-149 415-474 (823)
166 KOG0498 K+-channel ERG and rel 26.4 1.1E+02 0.0023 29.5 4.5 34 93-126 460-493 (727)
167 COG3128 PiuC Uncharacterized i 26.4 1.9E+02 0.004 23.6 5.2 25 117-141 145-169 (229)
168 TIGR00022 uncharacterized prot 26.3 66 0.0014 23.9 2.6 49 89-137 64-134 (142)
169 cd00320 cpn10 Chaperonin 10 Kd 26.0 86 0.0019 21.8 3.0 30 113-142 51-80 (93)
170 COG5285 Protein involved in bi 25.8 68 0.0015 27.5 2.8 25 115-139 192-216 (299)
171 PF00166 Cpn10: Chaperonin 10 25.3 56 0.0012 22.6 1.9 39 99-140 40-78 (93)
172 cd05126 Mth938 Mth938 domain. 25.1 67 0.0015 23.4 2.4 26 102-135 6-31 (117)
173 KOG1356 Putative transcription 24.6 27 0.0006 33.9 0.3 22 117-138 800-821 (889)
174 COG0756 Dut dUTPase [Nucleotid 24.1 82 0.0018 24.2 2.8 34 97-133 20-53 (148)
175 CHL00075 rpl21 ribosomal prote 24.0 92 0.002 22.6 2.9 20 105-129 6-25 (108)
176 PRK03606 ureidoglycolate hydro 23.8 3.5E+02 0.0075 20.9 7.1 56 89-144 74-137 (162)
177 KOG2130 Phosphatidylserine-spe 23.7 1.2E+02 0.0025 26.7 3.9 27 112-138 259-285 (407)
178 CHL00010 infA translation init 21.5 1.1E+02 0.0024 20.5 2.8 13 117-129 44-56 (78)
179 PF03171 2OG-FeII_Oxy: 2OG-Fe( 21.4 2.6E+02 0.0056 18.6 4.7 48 102-150 36-96 (98)
180 COG3718 IolB Uncharacterized e 21.4 5E+02 0.011 21.8 7.4 72 61-142 27-103 (270)
181 COG3717 KduI 5-keto 4-deoxyuro 20.9 2E+02 0.0043 24.2 4.5 38 95-137 77-116 (278)
182 PF07131 DUF1382: Protein of u 20.8 1E+02 0.0022 20.2 2.3 18 29-46 16-33 (61)
183 PF13550 Phage-tail_3: Putativ 20.2 78 0.0017 23.1 2.0 24 103-131 128-151 (164)
No 1
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=100.00 E-value=2.7e-57 Score=347.17 Aligned_cols=157 Identities=62% Similarity=1.161 Sum_probs=154.1
Q ss_pred ceEEEEecCC-CCCCCCCCccCCCCcCCHhHHhhcCcEEEecCCCCCCChHHHHHHHHhcCCceeeeeeeCCCcccCHHH
Q 031374 2 VLEAWFMDES-SQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEE 80 (160)
Q Consensus 2 ~~~aw~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~GV~~w~~~~~~~~~~~~l~~l~~~~gy~~~dvi~v~~~~~p~~~~ 80 (160)
||+||||+++ ++|||+|||.+|++.+|+++|+++||+||++++|+++.+.+|++|++++||+.+|+++++++++|||+.
T Consensus 1 m~qaw~mdd~~~~D~RlPhh~~p~~~vs~d~L~~lGVly~kld~D~~e~~~~L~~lr~e~~~~~~d~~~~~~e~~~nfde 80 (179)
T KOG2107|consen 1 MMQAWYMDDSPCEDQRLPHHKDPKKEVSLDELARLGVLYWKLDADNYELDEELDRLREERGYSYMDICTVCPETLPNFDE 80 (179)
T ss_pred CeeEEEcCCCCcccccCCCCCCCcccCCHHHHHhhCcEEEEecCchHHHHHHHHHHHHHcCCceeeEEEEchhhcccHHH
Confidence 8999999996 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccCC
Q 031374 81 KLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQS 158 (160)
Q Consensus 81 ~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~~ 158 (160)
+++.|+.+|.|.++|||||++|+|+|+|++++|.||+|.|++||+|+||||++|+|+.++.++++|+|||+++|+|+.
T Consensus 81 Kvk~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF~~~p~wta 158 (179)
T KOG2107|consen 81 KVKSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLFVGEPKWTA 158 (179)
T ss_pred HHHHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHhcCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=100.00 E-value=1.1e-45 Score=285.04 Aligned_cols=154 Identities=53% Similarity=0.903 Sum_probs=132.8
Q ss_pred EEEEecCCC-CCCCCCCccCCCCcCCHhHHhhcCcEEEecCCCCCCChHHHHHHHHhcCCceeee-eeeCCCcccCHHHH
Q 031374 4 EAWFMDESS-QDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDL-LDLCPEKVTNYEEK 81 (160)
Q Consensus 4 ~aw~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~GV~~w~~~~~~~~~~~~l~~l~~~~gy~~~dv-i~v~~~~~p~~~~~ 81 (160)
+|||||+.+ +|+++||+++|++++|.++|+++||.+|+++++..++...++.+++.++|...++ +...+...|+|+++
T Consensus 1 ~~~~~d~~~~~d~~~~~~~~p~~~~s~~~l~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~p~~~~~ 80 (157)
T PF03079_consen 1 RAWYYDEEDPGDQRLPHHSDPDKIVSLLQLAGLGVLYWKLDADDPEDAEELQIIRAYRNYIDRDIDVVSLHPDHPNYEAK 80 (157)
T ss_dssp EEEEB-S--S-STCCEEE-SCHHCHHHHHCCCTCEEEEE-SCGGTTS-HHHHHHHHCHCHHCCCCEEEESTTTSTCHHHH
T ss_pred CEEEECCCCcccCCCcccCCcccccCHHHhhCceEEEeecCCCccCCccHHHHHHHHcCCceEEEEEEecCCCCcchhHH
Confidence 699999976 7999999999999999999999999999999887777888999999999988877 55554557999999
Q ss_pred hcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccC
Q 031374 82 LKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQ 157 (160)
Q Consensus 82 ~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~ 157 (160)
+++|+.+|+|+++|+|||++|+|+|++++.++.|+++.|++||+|+||+|++|||+++++++++|||||+++|+|+
T Consensus 81 ~~~f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~~gWv 156 (157)
T PF03079_consen 81 LKKFFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDEPGWV 156 (157)
T ss_dssp HHHHCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSCGGEE
T ss_pred hhhhheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
No 3
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=100.00 E-value=9.5e-38 Score=240.84 Aligned_cols=148 Identities=28% Similarity=0.523 Sum_probs=130.2
Q ss_pred ceEEEEecCCCCCCCCCCccCCCCcCCHhHHhhcCcEE--EecCCCCCC----------ChHHHHHHHHhcCCceeeeee
Q 031374 2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLY--WRLNPKNYE----------NDEELQKIREARGYSYMDLLD 69 (160)
Q Consensus 2 ~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~L~~~GV~~--w~~~~~~~~----------~~~~l~~l~~~~gy~~~dvi~ 69 (160)
|++.+.+|+. .-..+++++ +.+|+++||.+ |.+.+.... ...++++|++++||+++|+|+
T Consensus 1 Ms~l~I~d~~------~~~~~~dei--a~~l~~i~v~~e~we~~~~~~~~~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvs 72 (181)
T COG1791 1 MSRLRIHDET------KIITNQDEI--APELSKIEVSFERWEATALIKHGAEKEHIIDAYETEIDRLIRERGYKNRDVVS 72 (181)
T ss_pred CceEEEecCc------ccccCHhHh--hhhcccceeEhhhhhhccccccCcchhhhHhhHHHHHHHHHHhhCCceeeEEE
Confidence 7888888776 122345666 68899999997 764433111 257899999999999999999
Q ss_pred eCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374 70 LCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 70 v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~ 149 (160)
|+|++ |++++++++|+++|+|+++|+||||+|.|+|.+++.+|+|+.+.|++||+|+||+|++|||+++++++|+||||
T Consensus 73 v~~~~-pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRl 151 (181)
T COG1791 73 VSPSN-PKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRL 151 (181)
T ss_pred eCCCC-ccHHHHHHHHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEE
Confidence 99986 99999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ecCCcccCC
Q 031374 150 LSYGVQRQS 158 (160)
Q Consensus 150 f~~~p~w~~ 158 (160)
|+..|.|..
T Consensus 152 F~~~~gWVa 160 (181)
T COG1791 152 FTEPEGWVA 160 (181)
T ss_pred eeCCCCcee
Confidence 999999974
No 4
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.29 E-value=1.3e-11 Score=81.19 Aligned_cols=61 Identities=30% Similarity=0.502 Sum_probs=56.1
Q ss_pred cccceecCcc-eEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374 85 FYTEHIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150 (160)
Q Consensus 85 ~~~~H~H~~~-Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f 150 (160)
....|.|+.. |++||++|++.+.++++ ++.+++||.+.+|+|+.|++.+.++..++.+.+|
T Consensus 10 ~~~~h~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 10 SIPPHRHPGEDEFFYVLSGEGTLTVDGE-----RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEEEESSEEEEEEEEESEEEEEETTE-----EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred CCCCEECCCCCEEEEEEECCEEEEEccE-----EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 4679999977 99999999999999988 9999999999999999999999888899888776
No 5
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.18 E-value=9.4e-11 Score=86.78 Aligned_cols=65 Identities=26% Similarity=0.491 Sum_probs=55.4
Q ss_pred cCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374 83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY 152 (160)
Q Consensus 83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~ 152 (160)
+....+|+|+ .++..||++|++++.++++ ...+++||+|++|||+.|++.+.++.....|.++..
T Consensus 53 G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-----~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~~ 118 (131)
T COG1917 53 GAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-----KKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFPL 118 (131)
T ss_pred CcccccccCCCcceEEEEEecEEEEEecCC-----ceEecCCCEEEECCCCeeeeccCCCCceeEEEEeee
Confidence 3457899998 8899999999999999977 899999999999999999999887765555555443
No 6
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.1e-10 Score=86.68 Aligned_cols=65 Identities=28% Similarity=0.423 Sum_probs=54.6
Q ss_pred cceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccCC
Q 031374 87 TEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQS 158 (160)
Q Consensus 87 ~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~~ 158 (160)
..|.|. .+|++||++|+|.+.++++ .+.+++||.++||+|+.|++.+..+..++++.+- .|.|..
T Consensus 50 ~~~~H~~~dE~~~Vl~G~g~v~~~~~-----~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~--~p~~~~ 115 (127)
T COG0662 50 SLHHHHHRDEHWYVLEGTGKVTIGGE-----EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQ--SPPYLG 115 (127)
T ss_pred CcccccCcceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEe--cCCcCC
Confidence 455554 6999999999999999988 9999999999999999999999888888877553 344543
No 7
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.05 E-value=2.8e-09 Score=84.80 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=67.9
Q ss_pred ceeeeeeeCCCcccCHHHHhcCcccceecC---cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374 63 SYMDLLDLCPEKVTNYEEKLKNFYTEHIHA---DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD 139 (160)
Q Consensus 63 ~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~---~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~ 139 (160)
-..++.++.|...+.- -..-..|.|. ..|++||++|+|.+.+.+.++....+.+++||+++||+|..|++.+.
T Consensus 68 L~~g~t~l~PG~~g~e----~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~ 143 (191)
T PRK04190 68 LNFGTTRLYPGKVGDE----YFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNT 143 (191)
T ss_pred eEEEEEEECCCcEecc----cccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEEC
Confidence 4578888998764310 0112347884 46999999999999998776677789999999999999999999998
Q ss_pred CCCcEEEEEEecC
Q 031374 140 TSNYVKVMQILSY 152 (160)
Q Consensus 140 ~~~~~~~ir~f~~ 152 (160)
++..++++.++..
T Consensus 144 G~epl~fl~v~p~ 156 (191)
T PRK04190 144 GDEPLVFLACYPA 156 (191)
T ss_pred CCCCEEEEEEEcC
Confidence 8888888876643
No 8
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=99.05 E-value=9e-10 Score=78.99 Aligned_cols=57 Identities=28% Similarity=0.455 Sum_probs=44.3
Q ss_pred CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEE
Q 031374 84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVK 145 (160)
Q Consensus 84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~ 145 (160)
..+..|.|+..|+.||++|+|.+.++++ .+.++|||++++|||..|++...++..+.
T Consensus 14 ~~~~~h~h~~~~i~~v~~G~~~~~~~~~-----~~~l~~g~~~li~p~~~H~~~~~~~~~~~ 70 (136)
T PF02311_consen 14 FEFPPHWHDFYEIIYVLSGEGTLHIDGQ-----EYPLKPGDLFLIPPGQPHSYYPDSNEPWE 70 (136)
T ss_dssp -SEEEETT-SEEEEEEEEE-EEEEETTE-----EEEE-TT-EEEE-TTS-EEEEE-TTSEEE
T ss_pred CccCCEECCCEEEEEEeCCEEEEEECCE-----EEEEECCEEEEecCCccEEEecCCCCCEE
Confidence 3457899999999999999999999998 99999999999999999999988764444
No 9
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.01 E-value=3.8e-09 Score=79.77 Aligned_cols=70 Identities=20% Similarity=0.352 Sum_probs=59.3
Q ss_pred cccceecC-cceEEEEeeeeEEEEEecCC-CcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374 85 FYTEHIHA-DEEIRYCLEGSGYFDVRDES-DQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV 154 (160)
Q Consensus 85 ~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~-~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p 154 (160)
....|+|. .+|++||++|++.+.+.+++ ++...+.+++||++.||+|+.|++.+.++..+.++.+....|
T Consensus 42 ~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~~~~ 113 (146)
T smart00835 42 MLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTNDP 113 (146)
T ss_pred CcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEecCCC
Confidence 46799997 78999999999999998653 467789999999999999999999988778888886655543
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.01 E-value=1.9e-09 Score=80.43 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=53.2
Q ss_pred ccceecCcceEEEEeeeeEEEE-Ee-cCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccC
Q 031374 86 YTEHIHADEEIRYCLEGSGYFD-VR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQ 157 (160)
Q Consensus 86 ~~~H~H~~~Ei~yvl~G~g~f~-i~-~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~ 157 (160)
...|+|...|+.||++|++.+. +. ++ .+.+++||.+.+|++..|++.+. ..+.+|.+++ |.|.
T Consensus 48 ~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~t--P~~~ 112 (125)
T PRK13290 48 THLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFN--PPLT 112 (125)
T ss_pred ccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEEC--CCCC
Confidence 4668886679999999999999 74 77 89999999999999999999997 5777777766 4443
No 11
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.98 E-value=6.3e-09 Score=90.11 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=61.0
Q ss_pred CcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374 84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY 152 (160)
Q Consensus 84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~ 152 (160)
.....|+|. .+|++||++|++.+.+.+.+++-....+++||+++||+|..|++.+..+..++++.+|..
T Consensus 256 ~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s 325 (367)
T TIGR03404 256 AMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKA 325 (367)
T ss_pred CccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECC
Confidence 446899998 689999999999999976555555789999999999999999999988889999999876
No 12
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.96 E-value=4.3e-09 Score=87.10 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=60.8
Q ss_pred eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374 64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY 143 (160)
Q Consensus 64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~ 143 (160)
...++++.|+. .....|.|..+|.+|||+|+|.|.++++ .+.|++||+|.||||.+|++.++....
T Consensus 180 ~~~~~~~~PG~---------~~~~~~~H~~eh~~yiL~G~G~~~~~g~-----~~~V~~GD~i~i~~~~~h~~~~~G~~~ 245 (260)
T TIGR03214 180 NVHILSFEPGA---------SHPYIETHVMEHGLYVLEGKGVYNLDNN-----WVPVEAGDYIWMGAYCPQACYAGGRGE 245 (260)
T ss_pred EEEEEEECCCc---------ccCCcccccceeEEEEEeceEEEEECCE-----EEEecCCCEEEECCCCCEEEEecCCCc
Confidence 44567777653 1222577889999999999999999988 999999999999999999999988888
Q ss_pred EEEEEEecC
Q 031374 144 VKVMQILSY 152 (160)
Q Consensus 144 ~~~ir~f~~ 152 (160)
++.| ++++
T Consensus 246 ~~~l-~ykd 253 (260)
T TIGR03214 246 FRYL-LYKD 253 (260)
T ss_pred EEEE-EEcc
Confidence 8887 4443
No 13
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.95 E-value=6.2e-09 Score=78.43 Aligned_cols=71 Identities=27% Similarity=0.378 Sum_probs=54.6
Q ss_pred CcccceecCcceEEEEeeeeEEEEEecCCC-----cEEEEE--EcCCcEEEeCCCCeeeeeeCC-CCcEEEEEEecCCc
Q 031374 84 NFYTEHIHADEEIRYCLEGSGYFDVRDESD-----QWIRIW--IKAGDLIVLPAGIYHRFTLDT-SNYVKVMQILSYGV 154 (160)
Q Consensus 84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~-----~~~~~~--v~~GDli~iP~g~~H~f~~~~-~~~~~~ir~f~~~p 154 (160)
.....|+|...|+.||++|++++.+-..++ +..... +++||+++||+|..||..+++ ++.+..+.|+...|
T Consensus 45 ~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~ 123 (144)
T PF00190_consen 45 GLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNP 123 (144)
T ss_dssp EEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESST
T ss_pred CccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCC
Confidence 357899998899999999999998876654 344555 999999999999999999887 45555555555554
No 14
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.84 E-value=1.4e-08 Score=79.40 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=54.8
Q ss_pred ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374 86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS 151 (160)
Q Consensus 86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~ 151 (160)
...|+|..+|+.||++|+..+.++++ .+.+++||.+.+|++++|++.+.++..++++.++.
T Consensus 121 ~~~~~h~~~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~ 181 (185)
T PRK09943 121 GERIKHQGEEIGTVLEGEIVLTINGQ-----DYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHT 181 (185)
T ss_pred ccccccCCcEEEEEEEeEEEEEECCE-----EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeC
Confidence 34677889999999999999999988 99999999999999999999987777888887765
No 15
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.77 E-value=4.6e-08 Score=75.33 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=64.1
Q ss_pred eeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--CeeeeeeCCC
Q 031374 65 MDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTLDTS 141 (160)
Q Consensus 65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~~~~ 141 (160)
..+..|.|+. .-...|+|+ ++|++|||+|++.+.+++. +..|+|||.+-.||| +.|.|.+.+.
T Consensus 44 vn~~~v~PG~---------~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-----e~~lrpGD~~gFpAG~~~aHhliN~s~ 109 (161)
T COG3837 44 VNLEIVEPGG---------ESSLRHWHSAEDEFVYILEGEGTLREDGG-----ETRLRPGDSAGFPAGVGNAHHLINRSD 109 (161)
T ss_pred cceEEeCCCC---------ccccccccccCceEEEEEcCceEEEECCe-----eEEecCCceeeccCCCcceeEEeecCC
Confidence 4455666663 224689997 7999999999999999988 999999999999999 9999999998
Q ss_pred CcEEEEEEecCCc
Q 031374 142 NYVKVMQILSYGV 154 (160)
Q Consensus 142 ~~~~~ir~f~~~p 154 (160)
..++.+.+-..+|
T Consensus 110 ~~~~yL~vG~r~~ 122 (161)
T COG3837 110 VILRYLEVGTREP 122 (161)
T ss_pred ceEEEEEeccccc
Confidence 8888887766554
No 16
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.76 E-value=5.8e-08 Score=84.15 Aligned_cols=67 Identities=25% Similarity=0.271 Sum_probs=56.3
Q ss_pred cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374 85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY 152 (160)
Q Consensus 85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~ 152 (160)
....|+|...|+.||++|++.+.+.+.+++.+...+++||++++|+|..|++.+.. ..+.++-+|..
T Consensus 79 ~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~ 145 (367)
T TIGR03404 79 IRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDD 145 (367)
T ss_pred CCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCC
Confidence 35799999899999999999999987767776668999999999999999999874 44666665554
No 17
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.74 E-value=7.5e-08 Score=77.40 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=61.5
Q ss_pred CcccceecC-cc--eEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374 84 NFYTEHIHA-DE--EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY 152 (160)
Q Consensus 84 ~~~~~H~H~-~~--Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~ 152 (160)
.....|+|. .+ |++|+++|+|.+.+...+++.+.+.+++||+++||+|--|+..++....+.++-+|..
T Consensus 91 ~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~ 162 (209)
T COG2140 91 AMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPA 162 (209)
T ss_pred cccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeC
Confidence 345679997 34 4999999999999999889999999999999999999999999999999998888765
No 18
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.70 E-value=6.8e-08 Score=74.84 Aligned_cols=56 Identities=27% Similarity=0.395 Sum_probs=47.4
Q ss_pred ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374 86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 142 (160)
Q Consensus 86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~ 142 (160)
...|.|+.+|++|+++|+..+.+.+. ++.-.+.+++||+++||+|++|+....++.
T Consensus 41 ~d~H~~~tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~t 96 (159)
T TIGR03037 41 TDFHDDPGEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAGS 96 (159)
T ss_pred cccccCCCceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCCc
Confidence 46889999999999999999999864 333369999999999999999999876543
No 19
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.68 E-value=4.4e-08 Score=82.31 Aligned_cols=56 Identities=23% Similarity=0.330 Sum_probs=49.9
Q ss_pred cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEE
Q 031374 85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVK 145 (160)
Q Consensus 85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~ 145 (160)
.+.+|+|+..|+.||++|+|.+.+++. .+.+++||+++||+|..|.+...++....
T Consensus 60 ~~~~H~H~~~el~~v~~G~g~~~v~~~-----~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~ 115 (312)
T PRK13500 60 VFAEHTHDFCELVIVWRGNGLHVLNDR-----PYRITRGDLFYIHADDKHSYASVNDLVLQ 115 (312)
T ss_pred CCCccccceEEEEEEEcCeEEEEECCE-----EEeecCCeEEEECCCCeecccccCCceEE
Confidence 468999999999999999999999998 99999999999999999999875554333
No 20
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.67 E-value=4.2e-08 Score=81.06 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=47.2
Q ss_pred ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
...|+|+..|+.||++|+|.+.|++. .+.+++||+++||+|..|.+...++
T Consensus 31 ~~~H~H~~~ei~~i~~G~~~~~i~~~-----~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 31 FVEHTHQFCEIVIVWRGNGLHVLNDH-----PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CccccccceeEEEEecCceEEEECCe-----eeeecCCeEEEEcCCCcccccccCC
Confidence 56899999999999999999999998 9999999999999999999876543
No 21
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.66 E-value=8.3e-08 Score=75.46 Aligned_cols=56 Identities=25% Similarity=0.406 Sum_probs=47.0
Q ss_pred cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
....|.|+.+|++|+++|+..+.+.+ +++--.+.+++||+++||+|++|+....++
T Consensus 46 r~d~H~~~tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~~~ 101 (177)
T PRK13264 46 RTDFHYDPGEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQREAG 101 (177)
T ss_pred ccccccCCCceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccCCC
Confidence 35789999999999999999999975 233337999999999999999999876443
No 22
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.66 E-value=4.9e-08 Score=81.90 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=48.0
Q ss_pred ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374 86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY 143 (160)
Q Consensus 86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~ 143 (160)
...|||.+.|+.|+++|++.|.++++ .+.+.+||+++||+|++|.+...++..
T Consensus 39 ~~~HwH~e~Ei~yv~~G~~~~~i~g~-----~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 39 PTSHWHGQVEVNVPFDGDVEYLINNE-----KVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred CCCCccccEEEEEecCCcEEEEECCE-----EEEEcCCcEEEEecCCcccccccCCCc
Confidence 57899999999999999999999998 999999999999999999987655433
No 23
>PRK11171 hypothetical protein; Provisional
Probab=98.66 E-value=1.3e-07 Score=78.54 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=50.3
Q ss_pred eecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEE
Q 031374 89 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ 148 (160)
Q Consensus 89 H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir 148 (160)
|.|..+|.+||++|++.+.++++ .+.|++||.|.+|++..|+|.+..+..++.+.
T Consensus 201 ~~~~~ee~i~Vl~G~~~~~~~~~-----~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~ 255 (266)
T PRK11171 201 ETHVMEHGLYVLEGKGVYRLNND-----WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLL 255 (266)
T ss_pred cCCCceEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCCEEEECCCCCcEEEEE
Confidence 56889999999999999999988 99999999999999999999988777777764
No 24
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.64 E-value=2.1e-07 Score=73.57 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=56.7
Q ss_pred HhcCCceeeeeeeCCCcccC-HHHHhcCcccceecC-------cceEEEEeeeeEEEEEecCCC----cEEEEEEcCCcE
Q 031374 58 EARGYSYMDLLDLCPEKVTN-YEEKLKNFYTEHIHA-------DEEIRYCLEGSGYFDVRDESD----QWIRIWIKAGDL 125 (160)
Q Consensus 58 ~~~gy~~~dvi~v~~~~~p~-~~~~~~~~~~~H~H~-------~~Ei~yvl~G~g~f~i~~~~~----~~~~~~v~~GDl 125 (160)
++++. ..++..+.|+++++ |-.. .-|.|. ..|+++|++|+|.|.+.+.++ +++.+.+++||+
T Consensus 46 ~~~~L-~ygiTvi~Pg~vG~E~~~T-----~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~ 119 (182)
T PF06560_consen 46 QKRNL-RYGITVIPPGKVGGEYFMT-----KGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDV 119 (182)
T ss_dssp ----E-EEEEEEE---EETTEE-B--------BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEE
T ss_pred eeeeE-EeeeEEEcCcccCCccccC-----CCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCE
Confidence 34443 46899999998764 2222 346665 479999999999999998877 789999999999
Q ss_pred EEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374 126 IVLPAGIYHRFTLDTSNYVKVMQILS 151 (160)
Q Consensus 126 i~iP~g~~H~f~~~~~~~~~~ir~f~ 151 (160)
++||||..|+..+.++..+++.-++.
T Consensus 120 v~IPp~yaH~tIN~g~~~L~~~~~~~ 145 (182)
T PF06560_consen 120 VYIPPGYAHRTINTGDEPLVFAAWVP 145 (182)
T ss_dssp EEE-TT-EEEEEE-SSS-EEEEEEEE
T ss_pred EEECCCceEEEEECCCCcEEEEEEEe
Confidence 99999999999888888888876654
No 25
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.64 E-value=1.1e-07 Score=77.91 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=46.3
Q ss_pred CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374 84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD 139 (160)
Q Consensus 84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~ 139 (160)
.....|+|+..|+.||++|++.+.+++. .+.+++||+++||||..|.+...
T Consensus 34 ~~~~~H~H~~~ei~~v~~G~~~~~i~~~-----~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 34 SVSGLHQHDYYEFTLVLTGRYYQEINGK-----RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred cCCCCcccccEEEEEEEeceEEEEECCE-----EEEECCCcEEEeCCCCccceeee
Confidence 3457999999999999999999999998 99999999999999999976543
No 26
>PRK13503 transcriptional activator RhaS; Provisional
Probab=98.57 E-value=7.9e-08 Score=78.34 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=48.1
Q ss_pred CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
.....|+|+..|+.||++|++.+.+++. .+.+++||+++||+|..|.+...++
T Consensus 26 ~~~~~H~H~~~ei~~v~~G~~~~~i~~~-----~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 26 AAFPEHHHDFHEIVIVEHGTGIHVFNGQ-----PYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred ccccccccCceeEEEEecCceeeEecCC-----cccccCCcEEEECCCccchhhhccC
Confidence 3467899999999999999999999998 8999999999999999999876544
No 27
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.55 E-value=1.8e-07 Score=76.70 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=47.2
Q ss_pred ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
+..|+|+..|+.||++|+|.+.+++. .+.+++||+++||+|..|.+...++
T Consensus 31 ~~~H~h~~~~l~~v~~G~~~~~i~~~-----~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 31 FAEHTHEFCELVMVWRGNGLHVLNER-----PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCccccceEEEEEEecCcEEEEECCE-----EEeecCCcEEEECCCCcccccccCC
Confidence 57899999999999999999999988 9999999999999999999876554
No 28
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.52 E-value=4.1e-07 Score=80.94 Aligned_cols=62 Identities=16% Similarity=0.317 Sum_probs=54.2
Q ss_pred ccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374 86 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY 152 (160)
Q Consensus 86 ~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~ 152 (160)
...|.|. ..|+.||++|++.+.++++ .+.+++||.+.+|+|++|++.+.++..++++-++.+
T Consensus 389 ~~~h~H~~~~E~~~Vl~G~~~v~~dg~-----~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~ 451 (468)
T TIGR01479 389 LSLQMHHHRAEHWIVVSGTARVTIGDE-----TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSG 451 (468)
T ss_pred cCccccCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence 4556654 4688899999999999998 999999999999999999999988888998888764
No 29
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.52 E-value=3.9e-07 Score=74.33 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=39.9
Q ss_pred eecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374 89 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL 138 (160)
Q Consensus 89 H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~ 138 (160)
.++.++|+.||++|+..|.++++ .+.+++||+++||+|..|.|..
T Consensus 171 wtl~~dEi~YVLEGe~~l~IdG~-----t~~l~pGDvlfIPkGs~~hf~t 215 (233)
T PRK15457 171 WTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGT 215 (233)
T ss_pred eeccceEEEEEEEeEEEEEECCE-----EEEeCCCcEEEECCCCeEEecC
Confidence 33468999999999999999988 9999999999999999966643
No 30
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.51 E-value=2.8e-07 Score=75.57 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=50.7
Q ss_pred ccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEE
Q 031374 86 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ 148 (160)
Q Consensus 86 ~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir 148 (160)
...|+|+ ..|+.|+++|++.+.+++. .+.+++||++++|+|+.|.+...++....++.
T Consensus 36 ~~~H~H~~~~~l~~~~~G~~~~~~~~~-----~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~ 94 (287)
T TIGR02297 36 MPVHFHDRYYQLHYLTEGSIALQLDEH-----EYSEYAPCFFLTPPSVPHGFVTDLDADGHVLT 94 (287)
T ss_pred CCCcccccceeEEEEeeCceEEEECCE-----EEEecCCeEEEeCCCCccccccCCCcceEEEE
Confidence 5789998 7999999999999999988 89999999999999999998876655555554
No 31
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.50 E-value=7e-07 Score=79.87 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=52.5
Q ss_pred cceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374 87 TEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY 152 (160)
Q Consensus 87 ~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~ 152 (160)
..|.|. .+|+.||++|++.+.++++ .+.+.+||.+.+|+|++|++.+..+..+.+|.+..+
T Consensus 399 ~~~~H~~~~E~~~VlsG~~~v~idg~-----~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g 460 (478)
T PRK15460 399 SVQMHHHRAEHWVVVAGTAKVTIDGD-----IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSG 460 (478)
T ss_pred CcCCCCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence 345543 4699999999999999998 999999999999999999999988888888866443
No 32
>PRK11171 hypothetical protein; Provisional
Probab=98.40 E-value=2.5e-06 Score=70.81 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=47.8
Q ss_pred CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374 92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150 (160)
Q Consensus 92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f 150 (160)
..+|+.||++|++.+.++++ ++.+++||.+.+|++..|++.+..+..++++.+.
T Consensus 82 ~~eE~~~VlsG~l~v~~~g~-----~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~ 135 (266)
T PRK11171 82 GAETFLFVVEGEITLTLEGK-----THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIR 135 (266)
T ss_pred CceEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence 46899999999999999988 9999999999999999999998766677766553
No 33
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.38 E-value=2.3e-06 Score=65.69 Aligned_cols=71 Identities=20% Similarity=0.154 Sum_probs=46.6
Q ss_pred cccceecCcceEEEEeeeeEEEEEecC----CCcEEEEEEcCCcEEEeCCCCeeeeeeCC-CCcEEEEEEecCCcc
Q 031374 85 FYTEHIHADEEIRYCLEGSGYFDVRDE----SDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNYVKVMQILSYGVQ 155 (160)
Q Consensus 85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~----~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~~~~~ir~f~~~p~ 155 (160)
--+.|.|+.+||++|++|+|+..+... .++--++.+.+++.+.||+|..|..-+++ ...+.++.+.+.-|+
T Consensus 56 ~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSrpPv 131 (167)
T PF02041_consen 56 ATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISRPPV 131 (167)
T ss_dssp B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEESSS-
T ss_pred CCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEecCCCe
Confidence 357899999999999999999999865 35666899999999999999999976555 688999988887664
No 34
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.38 E-value=2.4e-06 Score=65.66 Aligned_cols=78 Identities=19% Similarity=0.352 Sum_probs=62.9
Q ss_pred hcCCceeeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeee
Q 031374 59 ARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137 (160)
Q Consensus 59 ~~gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~ 137 (160)
..+|.. -.++|.|+ +.+..|.|. -.|..+|++|+|.+.+++. ...+.+||.+.||+|..|+..
T Consensus 60 ~~~~~v-kri~V~pG----------~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~-----~~~~~~g~sv~Ip~g~~H~i~ 123 (151)
T PF01050_consen 60 GEGYKV-KRITVNPG----------KRLSLQYHHHRSEHWTVVSGTAEVTLDDE-----EFTLKEGDSVYIPRGAKHRIE 123 (151)
T ss_pred cCCEEE-EEEEEcCC----------CccceeeecccccEEEEEeCeEEEEECCE-----EEEEcCCCEEEECCCCEEEEE
Confidence 345543 46677765 346788886 5899999999999999988 999999999999999999999
Q ss_pred eCCCCcEEEEEEecC
Q 031374 138 LDTSNYVKVMQILSY 152 (160)
Q Consensus 138 ~~~~~~~~~ir~f~~ 152 (160)
+..+..+.+|-+=.+
T Consensus 124 n~g~~~L~~IEVq~G 138 (151)
T PF01050_consen 124 NPGKTPLEIIEVQTG 138 (151)
T ss_pred CCCCcCcEEEEEecC
Confidence 877777777766443
No 35
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.35 E-value=3.3e-06 Score=69.97 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=49.2
Q ss_pred ceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374 88 EHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 88 ~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~ 149 (160)
.+.|.. +|+.||++|+..+.++++ .+.+++||.+.+|+|..|++.+.++...+++.+
T Consensus 74 ~~~~~g~ee~iyVl~G~l~v~~~g~-----~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 74 GFGGEGIETFLFVISGEVNVTAEGE-----THELREGGYAYLPPGSKWTLANAQAEDARFFLY 131 (260)
T ss_pred CCCCCceEEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 455665 899999999999999988 899999999999999999999877777776644
No 36
>PLN00212 glutelin; Provisional
Probab=98.29 E-value=3.5e-06 Score=75.61 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=55.7
Q ss_pred CcccceecCcceEEEEeeeeEEEEEecCCCc-----E--------------------EEEEEcCCcEEEeCCCCeeeeee
Q 031374 84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQ-----W--------------------IRIWIKAGDLIVLPAGIYHRFTL 138 (160)
Q Consensus 84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~-----~--------------------~~~~v~~GDli~iP~g~~H~f~~ 138 (160)
.++..|+|...++.||+.|+|.+.+-..+.. . -...+++||+|.||+|+.||..+
T Consensus 91 gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN 170 (493)
T PLN00212 91 GLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYN 170 (493)
T ss_pred cccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCeEEEEe
Confidence 5678899999999999999999998632110 0 02589999999999999999999
Q ss_pred CCCCcEEEEEEecC
Q 031374 139 DTSNYVKVMQILSY 152 (160)
Q Consensus 139 ~~~~~~~~ir~f~~ 152 (160)
+.+..+.++.++.-
T Consensus 171 ~Gd~~~v~v~~~d~ 184 (493)
T PLN00212 171 DGDAPVVALYVYDI 184 (493)
T ss_pred CCCCcEEEEEEEec
Confidence 98888888877653
No 37
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=4e-06 Score=62.25 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=56.7
Q ss_pred eeeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374 64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 142 (160)
Q Consensus 64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~ 142 (160)
++-++++.|+. -..-|.|. .+-.+|+|+|.+....++.- -....+++||++.||||++|.-.+.++.
T Consensus 47 ~~~~vTi~pgA----------kakaH~H~~hEtaIYvlsG~ah~w~G~rL--E~ha~~~pGDf~YiPpgVPHqp~N~S~e 114 (142)
T COG4101 47 CMHLVTIPPGA----------KAKAHLHEEHETAIYVLSGEAHTWYGNRL--EEHAEVGPGDFFYIPPGVPHQPANLSTE 114 (142)
T ss_pred eEEEEeeCCCc----------cccccccccccEEEEEEeceeeeeeccce--eeeEEecCCCeEEcCCCCCCcccccCCC
Confidence 57889998763 13579997 57789999999988776531 1268899999999999999997765566
Q ss_pred cEEEEEE
Q 031374 143 YVKVMQI 149 (160)
Q Consensus 143 ~~~~ir~ 149 (160)
.+.|+..
T Consensus 115 p~s~vIa 121 (142)
T COG4101 115 PLSAVIA 121 (142)
T ss_pred CeEEEEE
Confidence 6666644
No 38
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.09 E-value=1.1e-05 Score=61.26 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCceeeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeC
Q 031374 51 EELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLP 129 (160)
Q Consensus 51 ~~l~~l~~~~gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP 129 (160)
..++.+.+++|+.+. .+ + +-|--.|.|+ ..|++-+++|++...+.+.++. .+.++.||.|+||
T Consensus 35 ~~~e~~~~~~gW~gs----W~-g---------~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliP 98 (163)
T COG4297 35 AQVEDHFKANGWFGS----WR-G---------GVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIP 98 (163)
T ss_pred HHHHHHHhhcCCccc----cc-c---------cccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEe
Confidence 468888889997643 11 1 1234567887 5899999999999999987665 7899999999999
Q ss_pred CCCeeeeeeCCCCcEEEEE
Q 031374 130 AGIYHRFTLDTSNYVKVMQ 148 (160)
Q Consensus 130 ~g~~H~f~~~~~~~~~~ir 148 (160)
+|+-|+---.+ ..|..+-
T Consensus 99 AGvGH~rl~sS-~DF~VvG 116 (163)
T COG4297 99 AGVGHCRLHSS-ADFQVVG 116 (163)
T ss_pred cCcccccccCC-CCeEEEc
Confidence 99999754433 4555553
No 39
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.05 E-value=7.6e-06 Score=69.21 Aligned_cols=59 Identities=27% Similarity=0.458 Sum_probs=49.1
Q ss_pred cCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEE
Q 031374 83 KNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVK 145 (160)
Q Consensus 83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~ 145 (160)
+...+.|.|+..-+|||++|.|-|.+-+.+ +..+++||+|+.|+++.|.........+.
T Consensus 102 GEvApsHrHsqsAlRFvveG~Ga~T~VdGe----r~~M~~GDfilTP~w~wHdHgn~g~eP~i 160 (351)
T COG3435 102 GEVAPSHRHNQSALRFVVEGKGAYTVVDGE----RTPMEAGDFILTPAWTWHDHGNEGTEPCI 160 (351)
T ss_pred cccCCcccccccceEEEEeccceeEeecCc----eeeccCCCEEEccCceeccCCCCCCCceE
Confidence 466899999999999999999977765433 99999999999999999987765555444
No 40
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.02 E-value=1.4e-05 Score=68.69 Aligned_cols=57 Identities=26% Similarity=0.479 Sum_probs=48.8
Q ss_pred cCcccceecCcceEEEEeeeeEEE-EEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcE
Q 031374 83 KNFYTEHIHADEEIRYCLEGSGYF-DVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYV 144 (160)
Q Consensus 83 ~~~~~~H~H~~~Ei~yvl~G~g~f-~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~ 144 (160)
+.....|.|...-|+||++|+|.| .|+++ ++.+++||++++|++..|...++++..+
T Consensus 91 Ge~~~~HRht~sAl~~vveG~G~~t~V~g~-----~~~~~~gD~~~tP~w~wH~H~n~~d~~~ 148 (335)
T TIGR02272 91 GEVAPSHRHTQSALRFIVEGKGAFTAVDGE-----RTTMHPGDFIITPSWTWHDHGNPGDEPM 148 (335)
T ss_pred CCCCCccccccceEEEEEEcCceEEEECCE-----EEeeeCCCEEEeCCCeeEecccCCCCcE
Confidence 355788999999999999999964 56777 9999999999999999999887765543
No 41
>PLN00212 glutelin; Provisional
Probab=97.98 E-value=7.7e-05 Score=67.07 Aligned_cols=70 Identities=9% Similarity=0.188 Sum_probs=58.8
Q ss_pred cCcccceecC-cceEEEEeeeeEEEEEecCC-CcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCC
Q 031374 83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDES-DQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYG 153 (160)
Q Consensus 83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~-~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~ 153 (160)
+..+..|||. ..||.||++|+|.+.|-+.+ .+++.-.|++||+++||.|-.|.-.++.+. |..+-|.+..
T Consensus 358 gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~eg-fe~v~F~tna 429 (493)
T PLN00212 358 NALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREG-CQYIAFKTNA 429 (493)
T ss_pred CcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCc-eEEEEeecCC
Confidence 4568999997 68999999999999998755 568889999999999999999988877544 7777666554
No 42
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.94 E-value=1.9e-05 Score=63.74 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=54.5
Q ss_pred eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374 64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY 143 (160)
Q Consensus 64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~ 143 (160)
...++.+.|+ .-++.|.|...|+.+||+|+. .++ .-...+||+|.+|+|..|...+.++..
T Consensus 128 ~v~Ll~i~pG----------~~~p~H~H~G~E~tlVLeG~f----~de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~ 188 (215)
T TIGR02451 128 RVRLLYIEAG----------QSIPQHTHKGFELTLVLHGAF----SDE-----TGVYGVGDFEEADGSVQHQPRTVSGGD 188 (215)
T ss_pred EEEEEEECCC----------CccCCCcCCCcEEEEEEEEEE----EcC-----CCccCCCeEEECCCCCCcCcccCCCCC
Confidence 4456666654 347899999999999999993 344 356789999999999999999998888
Q ss_pred EEEEEEe
Q 031374 144 VKVMQIL 150 (160)
Q Consensus 144 ~~~ir~f 150 (160)
|.|+-+.
T Consensus 189 Cicl~v~ 195 (215)
T TIGR02451 189 CLCLAVL 195 (215)
T ss_pred eEEEEEe
Confidence 8887553
No 43
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.91 E-value=2.9e-05 Score=59.85 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=42.1
Q ss_pred CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc-ccC
Q 031374 92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV-QRQ 157 (160)
Q Consensus 92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p-~w~ 157 (160)
..+|+.||++|+....++++ .+..++||+|+||+|..=.|.... ++.-||..-| .|.
T Consensus 94 ~YDEi~~VlEG~L~i~~~G~-----~~~A~~GDvi~iPkGs~I~fst~~----~a~~~Yv~yPa~W~ 151 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEISIDGQ-----TVTAKPGDVIFIPKGSTITFSTPD----YARFFYVTYPANWQ 151 (152)
T ss_dssp SSEEEEEEEEEEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEEEE----EEEEEEEEESTT--
T ss_pred ecceEEEEEEeEEEEEECCE-----EEEEcCCcEEEECCCCEEEEecCC----CEEEEEEECCCccC
Confidence 57999999999999998888 999999999999999988886533 3444466666 474
No 44
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.89 E-value=9.6e-05 Score=63.57 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=68.3
Q ss_pred hHHHHHHHH---hcCCceeeeeeeCCCcccC-------HHHHh--cCcccceecCcceEEEEeeeeEEEEEecCCCcEEE
Q 031374 50 DEELQKIRE---ARGYSYMDLLDLCPEKVTN-------YEEKL--KNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIR 117 (160)
Q Consensus 50 ~~~l~~l~~---~~gy~~~dvi~v~~~~~p~-------~~~~~--~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~ 117 (160)
.+.|+++.+ ..+|.+.-+--++|.+-+. +-.++ +.....|.|+...|++|++|+|+-.|+++ +
T Consensus 215 ~~aL~~~~~~~~~~~~~g~~l~y~NP~TG~~~~pti~~~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig~~-----~ 289 (335)
T TIGR02272 215 REALDDLTRTGEWDPWHGLKLRYVNPATGGYPMPTIGAFIQLLPKGFRTATYRSTDATVFCVVEGRGQVRIGDA-----V 289 (335)
T ss_pred HHHHHHHHhccCCCCCceEEEEEeCCCCCCCcchhHHHHHhccCCCCCCCCccccccEEEEEEeCeEEEEECCE-----E
Confidence 566766654 2356555555666653221 22222 24567789999999999999999999988 9
Q ss_pred EEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcc
Q 031374 118 IWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQ 155 (160)
Q Consensus 118 ~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~ 155 (160)
+..++||+++||+...|.+.++++ . ++--|++.|.
T Consensus 290 ~~W~~gD~f~vPsW~~~~h~a~~d--a-~Lf~~~D~Pl 324 (335)
T TIGR02272 290 FRFSPKDVFVVPSWHPVRFEASDD--A-VLFSFSDRPV 324 (335)
T ss_pred EEecCCCEEEECCCCcEecccCCC--e-EEEEecCHHH
Confidence 999999999999998888777643 2 2333555553
No 45
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.84 E-value=6.6e-05 Score=52.33 Aligned_cols=58 Identities=34% Similarity=0.377 Sum_probs=42.1
Q ss_pred eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
.-++.+.|+ ..++.|.|...|-.|||+|+... ++. . ..+||++..|+|..|.+...+.
T Consensus 26 ~~L~r~~pG----------~~~p~H~H~g~ee~~VLeG~~~d--~~~-----~--~~~G~~~~~p~g~~h~~~s~~g 83 (91)
T PF12973_consen 26 VSLLRLEPG----------ASLPRHRHPGGEEILVLEGELSD--GDG-----R--YGAGDWLRLPPGSSHTPRSDEG 83 (91)
T ss_dssp EEEEEE-TT----------EEEEEEEESS-EEEEEEECEEEE--TTC-----E--EETTEEEEE-TTEEEEEEESSC
T ss_pred EEEEEECCC----------CCcCccCCCCcEEEEEEEEEEEE--CCc-----c--CCCCeEEEeCCCCccccCcCCC
Confidence 455666654 45789999998888999999773 322 3 3899999999999999996443
No 46
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.74 E-value=0.00011 Score=49.78 Aligned_cols=42 Identities=31% Similarity=0.488 Sum_probs=34.1
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL 138 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~ 138 (160)
.+|+.|||+|++.+...+.. ++.++|||++++|+|..-....
T Consensus 25 ~~E~~~vleG~v~it~~~G~----~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 25 EDEFFYVLEGEVTITDEDGE----TVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp SEEEEEEEEEEEEEEETTTE----EEEEETTEEEEE-TTEEEEEEE
T ss_pred CCEEEEEEEeEEEEEECCCC----EEEEcCCcEEEECCCCEEEEEE
Confidence 49999999999999985332 8999999999999998665543
No 47
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00014 Score=56.10 Aligned_cols=84 Identities=23% Similarity=0.234 Sum_probs=58.7
Q ss_pred eeeeeeCCCcc-c-CHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374 65 MDLLDLCPEKV-T-NYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 142 (160)
Q Consensus 65 ~dvi~v~~~~~-p-~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~ 142 (160)
.|+++...+.- + .|-+....+|++ +-..+|+-||+||+....+.+. .+..+|||+|+||.|-.=-|+....
T Consensus 89 tdLvt~~~g~~l~aG~m~~~~~tf~w-tl~yDe~d~VlEGrL~V~~~g~-----tv~a~aGDvifiPKgssIefst~ge- 161 (176)
T COG4766 89 TDLVTEQEGSRLGAGLMEMKNTTFPW-TLNYDEIDYVLEGRLHVRIDGR-----TVIAGAGDVIFIPKGSSIEFSTTGE- 161 (176)
T ss_pred eceeecccCCccccceeeeccccCcc-eecccceeEEEeeeEEEEEcCC-----eEecCCCcEEEecCCCeEEEeccce-
Confidence 45555554320 0 233444445544 3357899999999999999988 9999999999999999888876654
Q ss_pred cEEEEEEecCCcc-cCC
Q 031374 143 YVKVMQILSYGVQ-RQS 158 (160)
Q Consensus 143 ~~~~ir~f~~~p~-w~~ 158 (160)
.+.+ |..-|. |.+
T Consensus 162 -a~fl--yvtyPanWqs 175 (176)
T COG4766 162 -AKFL--YVTYPANWQS 175 (176)
T ss_pred -EEEE--EEEccccccc
Confidence 4443 555566 754
No 48
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=97.66 E-value=0.00014 Score=59.80 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=47.5
Q ss_pred cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC--CcEEEEEEecCC
Q 031374 87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS--NYVKVMQILSYG 153 (160)
Q Consensus 87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~--~~~~~ir~f~~~ 153 (160)
..+-....++.++++|+|.+.+++. .+.+++||+|++|||+.|.+...++ .......+|...
T Consensus 43 r~~~~~~~~i~~~~~G~~~~~~~~~-----~~~~~~g~~i~i~p~~~h~~~~~~~~~~~~~~~~~~~~~ 106 (290)
T PRK10572 43 RPLGMKGYILNLTIRGQGVIFNGGR-----AFVCRPGDLLLFPPGEIHHYGRHPDSDEWYHQWVYFRPR 106 (290)
T ss_pred cCCCccceEEEEEEeccEEEecCCe-----eEecCCCCEEEECCCCceeeccCCCCCceeEEEEEecCh
Confidence 4455567799999999999999988 9999999999999999999875443 223333445443
No 49
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.53 E-value=0.00059 Score=51.06 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=39.4
Q ss_pred ccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCc-EEEeCCCCeeeeeeCCCCcEEEEEEecCC
Q 031374 86 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGD-LIVLPAGIYHRFTLDTSNYVKVMQILSYG 153 (160)
Q Consensus 86 ~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GD-li~iP~g~~H~f~~~~~~~~~~ir~f~~~ 153 (160)
-..|.|. ..|.++|++|++.+.+.+...+ -++.+...+ .|.||||+.|.+..-+.+ ..+|. ++.+
T Consensus 46 RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 46 RGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-TT-EEEEE---TT--EEEE-EESS
T ss_pred ccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECCchhhHhhccCCC-cEEEE-EcCC
Confidence 5789996 7899999999999999865433 456666554 899999999999876655 33333 4443
No 50
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.49 E-value=0.00073 Score=51.90 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=39.7
Q ss_pred ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374 86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT 140 (160)
Q Consensus 86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~ 140 (160)
-..|.-+.+|++|.++|.....+-+ +++.-.+.++.||+.++|++++|+-.--+
T Consensus 46 ~DyHine~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~ 99 (151)
T PF06052_consen 46 TDYHINETEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA 99 (151)
T ss_dssp SSEEE-SS-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred CccccCCcceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence 3679999999999999999999986 46666899999999999999999876543
No 51
>PF12852 Cupin_6: Cupin
Probab=97.43 E-value=0.0003 Score=54.63 Aligned_cols=45 Identities=29% Similarity=0.556 Sum_probs=37.2
Q ss_pred ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 94 EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 94 ~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
--+.+|++|++++.+.+.+. .+.+++||++++|.|..|.+..+..
T Consensus 36 ~~fh~V~~G~~~l~~~~~~~---~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGGE---PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEEEEECCeEEEEEcCCCC---eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 45788999999999986111 8999999999999999999965443
No 52
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.43 E-value=0.00039 Score=59.05 Aligned_cols=99 Identities=22% Similarity=0.285 Sum_probs=69.0
Q ss_pred ChHHHHHHHHhc---CCceeeeeeeCCCcccC--------HHHH--hcCcccceecCcceEEEEeeeeEEEEEecCCCcE
Q 031374 49 NDEELQKIREAR---GYSYMDLLDLCPEKVTN--------YEEK--LKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQW 115 (160)
Q Consensus 49 ~~~~l~~l~~~~---gy~~~dvi~v~~~~~p~--------~~~~--~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~ 115 (160)
+++.|++|.... -|-+.-+=-++|.+ +. +-+. .+.....|.|.+.-|+-|++|+|+..|+++
T Consensus 225 t~eAL~~la~~e~~dp~dG~~~ryvNP~T-Gg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig~~---- 299 (351)
T COG3435 225 TREALERLARLEEPDPFDGYKMRYVNPVT-GGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIGGE---- 299 (351)
T ss_pred HHHHHHHHHhccCCCCCCcceEEEecCCC-CCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEECCE----
Confidence 467788887665 12222222344431 22 1121 134467899999999999999999999999
Q ss_pred EEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcc
Q 031374 116 IRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQ 155 (160)
Q Consensus 116 ~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~ 155 (160)
++.-.+||+++||.-..|.+.++++..+-+ -|++.|+
T Consensus 300 -rf~~~~~D~fvVPsW~~~~~~~gs~da~LF--sfsD~PV 336 (351)
T COG3435 300 -RFDWSAGDIFVVPSWAWHEHVNGSEDAVLF--SFSDRPV 336 (351)
T ss_pred -EeeccCCCEEEccCcceeecccCCcceEEE--ecCCcHH
Confidence 999999999999999999999875443322 2666665
No 53
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.07 E-value=0.0013 Score=48.59 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=38.7
Q ss_pred cceec-CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeee
Q 031374 87 TEHIH-ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137 (160)
Q Consensus 87 ~~H~H-~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~ 137 (160)
..+++ +..|.-+||+|.+.+.-++.+ .+.+++||++++|+|..=.-+
T Consensus 56 ~~r~~y~~~E~chil~G~v~~T~d~Ge----~v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 56 KFRVTYDEDEFCHILEGRVEVTPDGGE----PVEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred cceEEcccceEEEEEeeEEEEECCCCe----EEEEcCCCEEEECCCCeEEEE
Confidence 35665 468999999999999987644 899999999999999876544
No 54
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.06 E-value=0.0076 Score=42.12 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=51.0
Q ss_pred CceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 62 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 62 y~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
+-+...+.|.|+.. --..+.....-++||++|.....|++. .+.+.+||...||+|-.-.+.+..+
T Consensus 11 ~fa~G~l~Lpp~~~---------K~~k~s~~~~~vF~V~~G~v~Vti~~~-----~f~v~~G~~F~VP~gN~Y~i~N~~~ 76 (85)
T PF11699_consen 11 FFASGMLELPPGGE---------KPPKNSRDNTMVFYVIKGKVEVTIHET-----SFVVTKGGSFQVPRGNYYSIKNIGN 76 (85)
T ss_dssp S-EEEEEEE-TCCC---------EEEEE--SEEEEEEEEESEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEE-SS
T ss_pred CceeEEEEeCCCCc---------cCCcccCCcEEEEEEEeCEEEEEEcCc-----EEEEeCCCEEEECCCCEEEEEECCC
Confidence 55677888888641 124566778899999999999999988 9999999999999999999998766
Q ss_pred CcEEE
Q 031374 142 NYVKV 146 (160)
Q Consensus 142 ~~~~~ 146 (160)
...+.
T Consensus 77 ~~a~L 81 (85)
T PF11699_consen 77 EEAKL 81 (85)
T ss_dssp S-EEE
T ss_pred CcEEE
Confidence 55544
No 55
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.91 E-value=0.0028 Score=56.10 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=42.1
Q ss_pred cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374 91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY 152 (160)
Q Consensus 91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~ 152 (160)
.+.+|++++.+|++.+.-.-. .+.+++||+++||.|+.++....+..+..++-.|..
T Consensus 144 aDGD~Li~~q~G~l~l~Te~G-----~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~~~ 200 (424)
T PF04209_consen 144 ADGDELIFPQQGSLRLETEFG-----RLDVRPGDYVVIPRGTRFRVELPGPARGYIIENFGS 200 (424)
T ss_dssp SSEEEEEEEEES-EEEEETTE-----EEEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEES-
T ss_pred CCCCEEEEEEECCEEEEecCe-----eEEEcCCeEEEECCeeEEEEEeCCCceEEEEEcCCC
Confidence 467999999999999998866 899999999999999999999886556666665543
No 56
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.59 E-value=0.01 Score=52.63 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=48.1
Q ss_pred cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374 91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS 151 (160)
Q Consensus 91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~ 151 (160)
.+.|+++++.+|++.+.-.-. .+.+++||+++||.|+.++....+..+..++-.|.
T Consensus 146 aDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 146 ADGDFLIVPQQGALLITTEFG-----RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cCCCEEEEEEeCcEEEEEecc-----ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 467999999999999999866 89999999999999999999987555666666665
No 57
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=96.56 E-value=0.008 Score=49.54 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=40.8
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~i 147 (160)
..-+.++++|++.+.+++. .+.+.+||++++|++.+|.+..........+
T Consensus 71 ~~~l~~~~~G~~~~~~~g~-----~~~l~~G~~~l~~~~~p~~~~~~~~~~~~~l 120 (302)
T PRK09685 71 HFFTVFQLSGHAIIEQDDR-----QVQLAAGDITLIDASRPCSIYPQGLSEQISL 120 (302)
T ss_pred cEEEEEEecceEEEEECCe-----EEEEcCCCEEEEECCCCcEeecCCCceeEEE
Confidence 4567788999999999988 8999999999999999998876554333333
No 58
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=96.49 E-value=0.025 Score=42.29 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=49.6
Q ss_pred ceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374 88 EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY 152 (160)
Q Consensus 88 ~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~ 152 (160)
.|.-..-|..||++|+|....-+. ++ .+.++||.+..+...-.|...+.+ .++++.+|..
T Consensus 50 ~~YknHlEAvyci~G~Gev~~~~~-G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~vCVFnP 109 (126)
T PF06339_consen 50 IHYKNHLEAVYCIEGEGEVEDLDT-GE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLVCVFNP 109 (126)
T ss_pred EEecCceEEEEEEeceEEEEEccC-Cc--EEEcCCCeEEecCCCccEEEEecC--CEEEEEEcCC
Confidence 344456799999999999888632 22 788999999999999999999988 7888888875
No 59
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=96.39 E-value=0.016 Score=51.53 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=46.6
Q ss_pred cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC-CCcEEEEEEec
Q 031374 91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNYVKVMQILS 151 (160)
Q Consensus 91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~~~~~ir~f~ 151 (160)
.+.|+++++.+|++.+.-.-. .+.+++||+++||.|+.++..+.+ ..+..++-.|.
T Consensus 152 aDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g 208 (438)
T PRK05341 152 ADGELLIVPQQGRLRLATELG-----VLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYG 208 (438)
T ss_pred CCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecC
Confidence 457999999999999999866 899999999999999999999643 45555665555
No 60
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=96.26 E-value=0.0092 Score=48.78 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=52.8
Q ss_pred eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcE
Q 031374 65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYV 144 (160)
Q Consensus 65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~ 144 (160)
.-+++..|+..=-| --+|-.+-=.|||+|+|.|.++.. .+.|++||+|.+-|-.+.+..++....|
T Consensus 184 v~ivsFePGa~ip~---------aEtHvmEHGlyvLeGk~vYrLn~d-----wv~V~aGD~mwm~A~cpQacyagG~g~f 249 (264)
T COG3257 184 VHIVSFEPGASIPY---------AETHVMEHGLYVLEGKGVYRLNNN-----WVPVEAGDYIWMGAYCPQACYAGGRGAF 249 (264)
T ss_pred EEEEEecCCcccch---------hhhhhhhcceEEEecceEEeecCc-----eEEeecccEEEeeccChhhhccCCCCce
Confidence 45667776632111 124445556899999999999965 8999999999999999999988777777
Q ss_pred EEE
Q 031374 145 KVM 147 (160)
Q Consensus 145 ~~i 147 (160)
+-|
T Consensus 250 rYL 252 (264)
T COG3257 250 RYL 252 (264)
T ss_pred EEE
Confidence 766
No 61
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=96.26 E-value=0.022 Score=42.26 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=45.8
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~ 149 (160)
..-+.+.++|++.+..++. .+.+.|||+++++++.+..+...+......+++
T Consensus 55 ~~~l~~~~~G~~~~~~~g~-----~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~i 106 (172)
T PF14525_consen 55 HYLLVLPLSGSARIEQGGR-----EVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRI 106 (172)
T ss_pred EEEEEEEccCCEEEEECCE-----EEEEcCCeEEEEcCCCCEEEEECCCccEEEEEE
Confidence 4567888899999999988 999999999999999999999887777777766
No 62
>PLN02658 homogentisate 1,2-dioxygenase
Probab=96.17 E-value=0.023 Score=50.48 Aligned_cols=56 Identities=16% Similarity=0.318 Sum_probs=46.9
Q ss_pred cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee-CCCCcEEEEEEec
Q 031374 91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL-DTSNYVKVMQILS 151 (160)
Q Consensus 91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~-~~~~~~~~ir~f~ 151 (160)
.+.|+++++.+|++.+.-.-. .+.+++||+++||.|+.++..+ ++..+..++-.|.
T Consensus 145 aDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~g 201 (435)
T PLN02658 145 ADGDFLIVPQQGRLWIKTELG-----KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIFG 201 (435)
T ss_pred CCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEecCccEEEEecCCCCeeEEEEeecC
Confidence 467999999999999998866 8999999999999999999997 4445566666663
No 63
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=96.08 E-value=0.014 Score=41.17 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=19.8
Q ss_pred CcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 113 DQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 113 ~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
-+.+++..++||+|++|||.+|+..+...
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSS
T ss_pred cccccceECCCCEEEECCCceEEEEeCCc
Confidence 35568889999999999999999766553
No 64
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=96.07 E-value=0.026 Score=46.25 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=40.6
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY 143 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~ 143 (160)
.+-+.||++|+....+.++ ...+.+|+...+|||..|.+++..+..
T Consensus 83 ae~~lfVv~Ge~tv~~~G~-----th~l~eggyaylPpgs~~~~~N~~~~~ 128 (264)
T COG3257 83 AETFLFVVSGEITVKAEGK-----THALREGGYAYLPPGSGWTLRNAQKED 128 (264)
T ss_pred ceEEEEEEeeeEEEEEcCe-----EEEeccCCeEEeCCCCcceEeeccCCc
Confidence 3568999999999999999 999999999999999999999655433
No 65
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.63 E-value=0.068 Score=38.80 Aligned_cols=63 Identities=25% Similarity=0.274 Sum_probs=45.8
Q ss_pred CcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--CeeeeeeCCC-CcEEEEEEe
Q 031374 84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTLDTS-NYVKVMQIL 150 (160)
Q Consensus 84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~~~~-~~~~~ir~f 150 (160)
.-+..|-|. .+-|.|+++|+....-. .++ .-.+++||+-.+-|| +.|.-.+.+. ..+..++++
T Consensus 40 ~gf~~HPH~g~eivTyv~~G~~~H~Ds-~G~---~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQlW 106 (107)
T PF02678_consen 40 AGFPMHPHRGFEIVTYVLEGELRHRDS-LGN---RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQLW 106 (107)
T ss_dssp TEEEEEEECSEEEEEEEEESEEEEEET-TSE---EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEEE
T ss_pred CCCCCcCCCCceEEEEEecCEEEEECC-CCC---eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEEc
Confidence 346899997 57788999999876643 222 678999999777765 8998776655 778888876
No 66
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=95.43 E-value=0.15 Score=40.12 Aligned_cols=60 Identities=18% Similarity=0.402 Sum_probs=44.5
Q ss_pred cCcccceecCc----ceEEEEeeeeEEEEEec--CC----CcEEEEEEcCCc--EEEeCCCCeeeeeeCCCC
Q 031374 83 KNFYTEHIHAD----EEIRYCLEGSGYFDVRD--ES----DQWIRIWIKAGD--LIVLPAGIYHRFTLDTSN 142 (160)
Q Consensus 83 ~~~~~~H~H~~----~Ei~yvl~G~g~f~i~~--~~----~~~~~~~v~~GD--li~iP~g~~H~f~~~~~~ 142 (160)
+.....|.|.. ..+..|+.|+..--+-| ++ ++|..+.+.+++ .|.||+|..|.|..-++.
T Consensus 53 gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 53 GVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp TBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred cEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence 45556777753 58999999988655543 21 789999998887 699999999999876654
No 67
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.31 E-value=0.051 Score=43.01 Aligned_cols=69 Identities=13% Similarity=0.234 Sum_probs=44.3
Q ss_pred CcccceecCcceEEEEeeeeEEEEEecC---------C--------------------------CcEEEEEEcCCcEEEe
Q 031374 84 NFYTEHIHADEEIRYCLEGSGYFDVRDE---------S--------------------------DQWIRIWIKAGDLIVL 128 (160)
Q Consensus 84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~---------~--------------------------~~~~~~~v~~GDli~i 128 (160)
.....|....+=+..++.|+=.+.+-.. . -..+.+.++|||+|+|
T Consensus 142 s~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD~Lfi 221 (251)
T PF13621_consen 142 SFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGDVLFI 221 (251)
T ss_dssp EEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-EEEE
T ss_pred ceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCeEEEE
Confidence 3455666566677788888877776211 0 1478999999999999
Q ss_pred CCCCeeeeeeC-CCC-cEEEEEEecC
Q 031374 129 PAGIYHRFTLD-TSN-YVKVMQILSY 152 (160)
Q Consensus 129 P~g~~H~f~~~-~~~-~~~~ir~f~~ 152 (160)
|+|-.|...+. +++ .+.+-..|..
T Consensus 222 P~gWwH~V~~~~~~~~sisvn~w~~~ 247 (251)
T PF13621_consen 222 PPGWWHQVENLSDDDLSISVNYWFRT 247 (251)
T ss_dssp -TT-EEEEEESTTSSCEEEEEEEEES
T ss_pred CCCCeEEEEEcCCCCeEEEEEEEecc
Confidence 99999999987 333 5555444543
No 68
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=95.25 E-value=0.19 Score=39.49 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=46.9
Q ss_pred cCcccceec---CcceEEEEeeeeEEEEEecC---C---CcEEEEEEcC--CcEEEeCCCCeeeeeeCCCC
Q 031374 83 KNFYTEHIH---ADEEIRYCLEGSGYFDVRDE---S---DQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN 142 (160)
Q Consensus 83 ~~~~~~H~H---~~~Ei~yvl~G~g~f~i~~~---~---~~~~~~~v~~--GDli~iP~g~~H~f~~~~~~ 142 (160)
+.....|.| .+..+..|+.|+..--+-|. . ++|..+.+.+ +-.|.||+|..|.|.+-+++
T Consensus 54 gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~ 124 (176)
T TIGR01221 54 GVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE 124 (176)
T ss_pred CEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC
Confidence 556677876 47899999999987655442 1 6799999988 55999999999999875544
No 69
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=95.14 E-value=0.054 Score=47.28 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=45.8
Q ss_pred CcceEEEEeeeeEEEEEe-cCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374 92 ADEEIRYCLEGSGYFDVR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY 152 (160)
Q Consensus 92 ~~~Ei~yvl~G~g~f~i~-~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~ 152 (160)
+..-|+.|++|+|+.... +. .+.+++||+++|||+..=.+..+++. +...|-|..
T Consensus 352 ~~~SIllv~~G~g~l~~~t~~-----~~~v~rG~V~fI~a~~~i~~~~~sd~-~~~yrAf~~ 407 (411)
T KOG2757|consen 352 DGPSILLVLKGSGILKTDTDS-----KILVNRGDVLFIPANHPIHLSSSSDP-FLGYRAFSN 407 (411)
T ss_pred CCceEEEEEecceEEecCCCC-----ceeeccCcEEEEcCCCCceeeccCcc-eeeeecccc
Confidence 346789999999999998 55 89999999999999998888877654 777776664
No 70
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=94.95 E-value=0.18 Score=42.82 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=39.7
Q ss_pred cccceecCcceEEEEeeeeEEEEEecCC------------------CcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374 85 FYTEHIHADEEIRYCLEGSGYFDVRDES------------------DQWIRIWIKAGDLIVLPAGIYHRFTLDT 140 (160)
Q Consensus 85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~------------------~~~~~~~v~~GDli~iP~g~~H~f~~~~ 140 (160)
-+..|+=+.+=+..-++|+=...|.... .....+.++|||+|.||+|..|...+.+
T Consensus 127 g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~ 200 (319)
T PF08007_consen 127 GFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD 200 (319)
T ss_dssp ESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS
T ss_pred CccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC
Confidence 3577777778888889999999997610 2366899999999999999999998877
No 71
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=94.54 E-value=0.052 Score=44.28 Aligned_cols=66 Identities=23% Similarity=0.374 Sum_probs=52.5
Q ss_pred cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeee---eeeC---------CCCcEEEEEEecCC
Q 031374 87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR---FTLD---------TSNYVKVMQILSYG 153 (160)
Q Consensus 87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~---f~~~---------~~~~~~~ir~f~~~ 153 (160)
..|..+.+|++|-++|.....+-++ ++.=.+.++.||+.++|++++|+ |..+ .+..+-++|++.+.
T Consensus 47 dyHieegeE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqRFantvGlVVEr~R~~tE~D~iR~yvg~ 124 (279)
T KOG3995|consen 47 DYHIEEGEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRYYVGD 124 (279)
T ss_pred ccccCCcchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhhhccceeEEEEeccCCCccceEEEEecc
Confidence 5788889999999999999999854 44447999999999999999995 4322 34567788887664
No 72
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.91 E-value=0.29 Score=42.77 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=40.7
Q ss_pred CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374 92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 142 (160)
Q Consensus 92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~ 142 (160)
+.+|++++..|+..+...-. .+.|++||+.+||.|+.-+.+.-++.
T Consensus 145 Dge~Livpq~G~l~l~te~G-----~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 145 DGELLIVPQQGELRLKTELG-----VLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CCCEEEEeecceEEEEEeec-----eEEecCCcEEEeeCCceEEEEecCCc
Confidence 46899999999999998866 89999999999999999999875554
No 73
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=93.39 E-value=0.085 Score=43.85 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=31.8
Q ss_pred cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
-.+.|+|..++-.||++|.... ++. +=-...+.+|.+...|+|..|.-.+.+.
T Consensus 48 ~~pph~H~~~~~~~Vi~G~~~~--~~~--~a~~~~l~~Gsy~~~PaG~~h~~~~~~~ 100 (251)
T PF14499_consen 48 SSPPHIHNADYRGTVISGELHN--GDP--KAAAMWLPAGSYWFQPAGEPHITAAEGE 100 (251)
T ss_dssp EE--BEESS-EEEEEEESEEEE--TTE--E-----E-TTEEEEE-TT-EEEETTS-E
T ss_pred cCCCcceeeeEEEEEEEeEEEc--CCC--cccceecCCCceEeccCCCceeeeccCc
Confidence 3589999999999999997554 322 1013569999999999998887655443
No 74
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=93.33 E-value=0.19 Score=41.06 Aligned_cols=26 Identities=35% Similarity=0.716 Sum_probs=19.2
Q ss_pred EEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374 117 RIWIKAGDLIVLPAGIYHRFTLDTSN 142 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~~H~f~~~~~~ 142 (160)
.+.++||.-|.|+||++|+|...++.
T Consensus 155 ~l~L~PGESiTL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 155 QLRLNPGESITLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred eEEeCCCCeEeeCCCCeeeEEecCCC
Confidence 46889999999999999999987655
No 75
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=93.15 E-value=0.8 Score=36.07 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=47.7
Q ss_pred cCcccceecC-c-ceEEEEeeeeEEEEEecC-C-----CcEEEEEEcCC--cEEEeCCCCeeeeeeCCCCc
Q 031374 83 KNFYTEHIHA-D-EEIRYCLEGSGYFDVRDE-S-----DQWIRIWIKAG--DLIVLPAGIYHRFTLDTSNY 143 (160)
Q Consensus 83 ~~~~~~H~H~-~-~Ei~yvl~G~g~f~i~~~-~-----~~~~~~~v~~G--Dli~iP~g~~H~f~~~~~~~ 143 (160)
+..-..|.|. . .++..|+.|+...-+-+- . ++|..+.+.+- -.|.||+|..|.|.+-++..
T Consensus 55 GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~ 125 (173)
T COG1898 55 GVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA 125 (173)
T ss_pred CeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence 4556788885 4 899999999987666542 2 35999999876 78999999999999766654
No 76
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=92.94 E-value=0.22 Score=41.52 Aligned_cols=53 Identities=30% Similarity=0.538 Sum_probs=31.4
Q ss_pred cccceecCc---------ceEEEEe-e---eeEEEEEecC-CCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374 85 FYTEHIHAD---------EEIRYCL-E---GSGYFDVRDE-SDQWIRIWIKAGDLIVLPAGIYHRFTL 138 (160)
Q Consensus 85 ~~~~H~H~~---------~Ei~yvl-~---G~g~f~i~~~-~~~~~~~~v~~GDli~iP~g~~H~f~~ 138 (160)
-++.|.|+. +|++|+. . |-|.-.+-.. ...=-.+.|+-||+++||.| +|..-+
T Consensus 165 SyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~g-yHp~~a 231 (261)
T PF04962_consen 165 SYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSG-YHPVVA 231 (261)
T ss_dssp S-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTT-B-SEEE
T ss_pred CcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCC-CCCcCc
Confidence 378999998 8999983 2 4343222211 10111678999999999999 775443
No 77
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=92.22 E-value=0.43 Score=41.91 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=34.3
Q ss_pred CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374 92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL 138 (160)
Q Consensus 92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~ 138 (160)
....|..|++|++.+..++. ++.+++|+.++||++.......
T Consensus 338 ~~~~Illv~~G~~~i~~~~~-----~~~l~~G~~~fipa~~~~~~~~ 379 (389)
T PRK15131 338 QSAAILFCVEGEAVLWKGEQ-----QLTLKPGESAFIAANESPVTVS 379 (389)
T ss_pred CCcEEEEEEcceEEEEeCCe-----EEEECCCCEEEEeCCCccEEEe
Confidence 35689999999999876655 7899999999999987665433
No 78
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=92.10 E-value=0.42 Score=40.22 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=33.5
Q ss_pred CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeee
Q 031374 92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136 (160)
Q Consensus 92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f 136 (160)
....+..|++|++....++. .+.+++|+.++|||+.....
T Consensus 252 ~~~~il~v~~G~~~i~~~~~-----~~~l~~G~~~~ipa~~~~~~ 291 (302)
T TIGR00218 252 QSALILSVLEGSGRIKSGGK-----TLPLKKGESFFIPAHLGPFT 291 (302)
T ss_pred CCcEEEEEEcceEEEEECCE-----EEEEecccEEEEccCCccEE
Confidence 45789999999999877655 79999999999999986543
No 79
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=91.88 E-value=0.48 Score=40.58 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=37.8
Q ss_pred cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374 91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT 140 (160)
Q Consensus 91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~ 140 (160)
+....|.+|++|++....+++ .+.+++|+-++||+...-+.-.+.
T Consensus 258 ~~~~~il~v~eG~~~l~~~~~-----~~~l~~G~s~~ipa~~~~~~i~g~ 302 (312)
T COG1482 258 QESFSILLVLEGEGTLIGGGQ-----TLKLKKGESFFIPANDGPYTIEGE 302 (312)
T ss_pred CCCcEEEEEEcCeEEEecCCE-----EEEEcCCcEEEEEcCCCcEEEEec
Confidence 347899999999999999987 999999999999999665544333
No 80
>COG1741 Pirin-related protein [General function prediction only]
Probab=91.38 E-value=0.8 Score=38.55 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=55.4
Q ss_pred cCcccceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--Ceeeeee--CCCCcEEEEEEecCCcccC
Q 031374 83 KNFYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTL--DTSNYVKVMQILSYGVQRQ 157 (160)
Q Consensus 83 ~~~~~~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~--~~~~~~~~ir~f~~~p~w~ 157 (160)
+..+..|-|.. +-|-|+++|+....-...+ .-.+.|||+-..-|| +.|+-.+ .+...+..+.++..-|.+.
T Consensus 54 G~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn----~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP~~~ 129 (276)
T COG1741 54 GRGFPPHPHRGLETVTYVLDGEIEHRDSLGN----KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAAD 129 (276)
T ss_pred CCcCCCCCCCCcEEEEEEEccEEEEeecCCc----eeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCchhh
Confidence 34689999975 6788999999888776433 678899999888876 8898554 3666899999988876553
No 81
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=91.38 E-value=0.65 Score=32.54 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=30.2
Q ss_pred cCcccceecCc---ceEEEEe----eeeEEEEEec----------------CCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374 83 KNFYTEHIHAD---EEIRYCL----EGSGYFDVRD----------------ESDQWIRIWIKAGDLIVLPAGIYHRFTLD 139 (160)
Q Consensus 83 ~~~~~~H~H~~---~Ei~yvl----~G~g~f~i~~----------------~~~~~~~~~v~~GDli~iP~g~~H~f~~~ 139 (160)
+.+...|.|.. -=++|+- .|...|.-.. .....+.+..++||+|+.|+.+.|.....
T Consensus 10 g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H~v~p~ 89 (101)
T PF13759_consen 10 GGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWHGVPPN 89 (101)
T ss_dssp T--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEEEE---
T ss_pred CCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEEeccCc
Confidence 45668899975 3556653 2333333211 11347889999999999999999998754
Q ss_pred CC
Q 031374 140 TS 141 (160)
Q Consensus 140 ~~ 141 (160)
..
T Consensus 90 ~~ 91 (101)
T PF13759_consen 90 NS 91 (101)
T ss_dssp -S
T ss_pred CC
Confidence 33
No 82
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=91.22 E-value=0.36 Score=38.85 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=23.8
Q ss_pred EEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374 116 IRIWIKAGDLIVLPAGIYHRFTLDTSN 142 (160)
Q Consensus 116 ~~~~v~~GDli~iP~g~~H~f~~~~~~ 142 (160)
-.+.++||.-|.+|||++|+|-+..+.
T Consensus 153 ~~lkL~PGesitL~Pg~~HsFwae~g~ 179 (225)
T COG3822 153 SQLKLSPGESITLPPGLYHSFWAEEGG 179 (225)
T ss_pred eeEEECCCCcEecCCCceeeeeecCCc
Confidence 368899999999999999999887654
No 83
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=89.67 E-value=2.3 Score=35.27 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=47.8
Q ss_pred HhcCcccceecC--cceEEEEeeeeEEEEEecCCCcE-EEE-EEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374 81 KLKNFYTEHIHA--DEEIRYCLEGSGYFDVRDESDQW-IRI-WIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 81 ~~~~~~~~H~H~--~~Ei~yvl~G~g~f~i~~~~~~~-~~~-~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~ 149 (160)
..+.+...|.|. -.|.+-|++|+..|.+-++++.. -+. ....++.-+|||+..|+....+.+--.-+.|
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~f 91 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSF 91 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEE
Confidence 446788899995 47999999999999887655542 223 3444556579999999998765443333333
No 84
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=89.39 E-value=0.3 Score=41.81 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEcCCcEEEeCCCCeeeeeeC
Q 031374 117 RIWIKAGDLIVLPAGIYHRFTLD 139 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~~H~f~~~ 139 (160)
++.++|||+++||||++|.+..+
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~~G 181 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYLKG 181 (312)
T ss_pred EEecCCCCEEEecCCCceeeccc
Confidence 79999999999999999987543
No 85
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=89.15 E-value=2 Score=30.63 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=35.6
Q ss_pred ceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 88 EHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 88 ~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
.+..+ ..|+.-|++|++...+.+.+ .| ....+|+...||++..-.......
T Consensus 35 Y~F~T~~~E~M~vvsG~l~V~lpg~~-ew--~~~~aGesF~VpanssF~v~v~~~ 86 (94)
T PF06865_consen 35 YTFGTSAPERMEVVSGELEVKLPGED-EW--QTYSAGESFEVPANSSFDVKVKEP 86 (94)
T ss_dssp EEEEESS-EEEEEEESEEEEEETT-S-S---EEEETT-EEEE-TTEEEEEEESS-
T ss_pred EEEcCCCCEEEEEEEeEEEEEcCCCc-cc--EEeCCCCeEEECCCCeEEEEECcc
Confidence 34443 57999999999999999754 44 566799999999998877776543
No 86
>PRK10579 hypothetical protein; Provisional
Probab=89.15 E-value=2.6 Score=30.05 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=37.7
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
..|+.=|++|++...+.+.++ .....+|+-..||++..-.......
T Consensus 41 ~~E~MeivsG~l~V~Lpg~~e---w~~~~aG~sF~VpanssF~l~v~~~ 86 (94)
T PRK10579 41 EPEEMTVISGALNVLLPGATD---WQVYEAGEVFNVPGHSEFHLQVAEP 86 (94)
T ss_pred CcEEEEEEeeEEEEECCCCcc---cEEeCCCCEEEECCCCeEEEEECcc
Confidence 569999999999999997543 4667899999999998877766543
No 87
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=89.09 E-value=0.21 Score=42.02 Aligned_cols=20 Identities=40% Similarity=0.810 Sum_probs=18.7
Q ss_pred EEEEcCCcEEEeCCCCeeee
Q 031374 117 RIWIKAGDLIVLPAGIYHRF 136 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~~H~f 136 (160)
.+.+++||.|+||||+.|..
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 68999999999999999984
No 88
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=87.46 E-value=3.7 Score=28.35 Aligned_cols=48 Identities=25% Similarity=0.195 Sum_probs=36.8
Q ss_pred ceEEEEeeeeEEEEEecCCCc--EEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 94 EEIRYCLEGSGYFDVRDESDQ--WIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 94 ~Ei~yvl~G~g~f~i~~~~~~--~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
-..+-|++|+..|..-+.++. --.+.+.+|+.-+|+|...|+...-+.
T Consensus 26 Wg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 26 WGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp EEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred EEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 577889999999999876432 236789999999999999999986543
No 89
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=86.48 E-value=0.62 Score=40.96 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.3
Q ss_pred EEEEcCCcEEEeCCCCeeeeeeCC
Q 031374 117 RIWIKAGDLIVLPAGIYHRFTLDT 140 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~~H~f~~~~ 140 (160)
.+.++|||.|+||||+.|.+-.+.
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~G~ 261 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQGV 261 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcCCe
Confidence 799999999999999999876543
No 90
>PHA02890 hypothetical protein; Provisional
Probab=85.89 E-value=4.6 Score=33.87 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=45.4
Q ss_pred EEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374 96 IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV 154 (160)
Q Consensus 96 i~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p 154 (160)
+..|++|++...+. .+|+-+...+.+||.+++.-++.|.... .+-.+..+++=++.|
T Consensus 95 FVlCL~Gs~~In~~-~~d~~iS~~I~kGeaF~mdv~t~H~i~T-Knl~L~Viky~vd~p 151 (278)
T PHA02890 95 FVACIEGSCKINVN-IGDREISDHIHENQGFIMDVGLDHAIDS-DNVGLFITKFEVDAH 151 (278)
T ss_pred EEEEeCCeEEEEEe-cCCceeeeeeecCceEEEEccceEEEEc-cceeEEEEEEEecce
Confidence 34568999999998 5678889999999999999999999877 555566666655544
No 91
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=84.97 E-value=7.4 Score=29.44 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=47.1
Q ss_pred CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeee---eeCCCCcEEEEEEecC
Q 031374 92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF---TLDTSNYVKVMQILSY 152 (160)
Q Consensus 92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f---~~~~~~~~~~ir~f~~ 152 (160)
..-=+.+|+.|+=...++++ .+...+|++++.+.+++=.. .++++..+.++++.-+
T Consensus 22 y~p~i~~vlQG~K~~~~g~~-----~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ld 80 (155)
T PF06719_consen 22 YEPSICIVLQGSKRVHLGDQ-----VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLELD 80 (155)
T ss_pred cCCeEEEEEeeeEEEEECCc-----eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEEcC
Confidence 34567899999999999988 89999999999999987653 4678888999988544
No 92
>PHA02984 hypothetical protein; Provisional
Probab=84.38 E-value=5.3 Score=33.68 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=45.2
Q ss_pred EEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC-CCCcEEEEEEecCCc
Q 031374 96 IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD-TSNYVKVMQILSYGV 154 (160)
Q Consensus 96 i~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~-~~~~~~~ir~f~~~p 154 (160)
+..|++|++...+. .+++-+...+++|+.+++.-++.|..... .+-.+..+++-++.|
T Consensus 96 FvlCl~G~~~I~~~-~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi~y~v~~p 154 (286)
T PHA02984 96 FVLCLNGKTSIECF-NKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVITYTSNCP 154 (286)
T ss_pred EEEEcCCeEEEEEe-cCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEEEEEecce
Confidence 44578999999998 45778899999999999999999997754 445555666555554
No 93
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=83.75 E-value=3.5 Score=29.12 Aligned_cols=53 Identities=28% Similarity=0.305 Sum_probs=35.8
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV 154 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p 154 (160)
..=..|+++|++. +++. ...+.+|+++++..|..=.+++++ ...++| |+.++|
T Consensus 20 ~~~~iyv~~G~~~--v~~~-----~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~l-ll~GeP 72 (104)
T PF05726_consen 20 HNAFIYVLEGSVE--VGGE-----EDPLEAGQLVVLEDGDEIELTAGE-EGARFL-LLGGEP 72 (104)
T ss_dssp -EEEEEEEESEEE--ETTT-----TEEEETTEEEEE-SECEEEEEESS-SSEEEE-EEEE--
T ss_pred CEEEEEEEECcEE--ECCC-----cceECCCcEEEECCCceEEEEECC-CCcEEE-EEEccC
Confidence 5678999999964 6655 478999999999977777777774 344444 455544
No 94
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=82.48 E-value=18 Score=27.28 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=43.1
Q ss_pred CcccceecCcceEEEEeee-eEEEEEecCCCcEEEEEEcC----Cc--EEEeCCCCeeeeeeCCCCcEE
Q 031374 84 NFYTEHIHADEEIRYCLEG-SGYFDVRDESDQWIRIWIKA----GD--LIVLPAGIYHRFTLDTSNYVK 145 (160)
Q Consensus 84 ~~~~~H~H~~~Ei~yvl~G-~g~f~i~~~~~~~~~~~v~~----GD--li~iP~g~~H~f~~~~~~~~~ 145 (160)
.+...|.=..+|+.+...| ...+.+-+.++++-++.+.+ |. .++||+|+.......+...+.
T Consensus 52 ~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y~ 120 (139)
T PF06172_consen 52 EFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGDYS 120 (139)
T ss_dssp BEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSSEE
T ss_pred CCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCCEE
Confidence 3445555568999999998 66777776788888877754 43 489999999988654444433
No 95
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=80.90 E-value=0.88 Score=37.85 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=34.4
Q ss_pred ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374 86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~ 149 (160)
...|+|...|=.||++|+..+...+..+ .-.+.+|-.+..|+++.|....++..-+-.||.
T Consensus 184 g~i~~h~~~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~~~e~~~vlyIRt 244 (251)
T PF14499_consen 184 GRIHTHASNERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIFITEDECVLYIRT 244 (251)
T ss_dssp -SEEE--S-EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E------EESS-EEEEEEE
T ss_pred CceeccCCceEEEEEEeEEEEeecccCC---CccccCCcccccCCcccccccccCCCEEEEEEE
Confidence 5789999999999999999995532211 578899999999999999976555555556664
No 96
>PLN02288 mannose-6-phosphate isomerase
Probab=80.72 E-value=2.6 Score=37.21 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=30.3
Q ss_pred cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCC
Q 031374 91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGI 132 (160)
Q Consensus 91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~ 132 (160)
.....|..|++|++++...+.+ ..+.+++|+.++||++.
T Consensus 352 ~~gp~Illv~~G~~~i~~~~~~---~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 352 VPGPSVFLVIEGEGVLSTGSSE---DGTAAKRGDVFFVPAGT 390 (394)
T ss_pred CCCCEEEEEEcCEEEEecCCcc---ceEEEeceeEEEEeCCC
Confidence 3456899999999998665431 13679999999999975
No 97
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=80.29 E-value=13 Score=28.51 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=36.1
Q ss_pred cceEEEEeeeeEEEEEecCCC-cEEEEEEcCCcEEEeC----CCCeeeeeeCCCCcEEEEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLP----AGIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP----~g~~H~f~~~~~~~~~~ir~ 149 (160)
...+++|++|.......+.++ ..+...+.+||++-.. .+..+.++......+.++.+
T Consensus 38 ~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i 99 (211)
T PRK11753 38 AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 99 (211)
T ss_pred CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence 457999999999887765554 4666678999997433 23344444433344444443
No 98
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=79.75 E-value=1.1 Score=39.32 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=54.4
Q ss_pred hHHHHHHHHhcCCc---eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCC--------------
Q 031374 50 DEELQKIREARGYS---YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDES-------------- 112 (160)
Q Consensus 50 ~~~l~~l~~~~gy~---~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~-------------- 112 (160)
.+.+.+|++.-+|- ..|-+.|+-.. .+.-+..|+=..+-+.+-..|.-+..|....
T Consensus 100 ~p~v~~l~~~FrflP~wr~ddiMIS~a~-------~GGgvg~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~ 172 (383)
T COG2850 100 HPEVAALMEPFRFLPDWRIDDIMISFAA-------PGGGVGPHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLIL 172 (383)
T ss_pred CHHHHHHHHHhccCccccccceEEEEec-------CCCccCccccchheeEEeecccceeecCCcccccCcCCCcchhhc
Confidence 46778888766632 13333344221 2344677887777666666677777776431
Q ss_pred ---CcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374 113 ---DQWIRIWIKAGDLIVLPAGIYHRFTLDT 140 (160)
Q Consensus 113 ---~~~~~~~v~~GDli~iP~g~~H~f~~~~ 140 (160)
.--+...++|||++.||||.+|.-.+..
T Consensus 173 ~~f~~~~d~vlepGDiLYiPp~~~H~gvae~ 203 (383)
T COG2850 173 APFEPDIDEVLEPGDILYIPPGFPHYGVAED 203 (383)
T ss_pred CCCCchhhhhcCCCceeecCCCCCcCCcccc
Confidence 1123567899999999999999877653
No 99
>PLN02288 mannose-6-phosphate isomerase
Probab=79.66 E-value=1.6 Score=38.56 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.9
Q ss_pred EEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 117 RIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
.+.++||+.|++|||++|.+-.+..
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G~~ 276 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSGEC 276 (394)
T ss_pred eEecCCCCEEEecCCCCceecCCCe
Confidence 7999999999999999998765543
No 100
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=79.11 E-value=11 Score=29.86 Aligned_cols=57 Identities=21% Similarity=0.151 Sum_probs=39.4
Q ss_pred cceEEEEeeeeEEEEEecCCCc-EEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~-~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~ 149 (160)
..-+++|++|......-+.+|+ .+...+.+||++-..++..+.++........++++
T Consensus 56 ~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~i 113 (230)
T PRK09391 56 ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRLI 113 (230)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEEE
Confidence 4578999999998877655554 45556789999877777666666544445555544
No 101
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=77.62 E-value=2.7 Score=31.56 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 113 DQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 113 ~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
..++.+.+++||+|+..+.+.|+...+..
T Consensus 177 ~~~~~~~~~~Gdvl~~~~~~~H~s~~N~s 205 (211)
T PF05721_consen 177 DEWVPVPMKAGDVLFFHSRLIHGSGPNTS 205 (211)
T ss_dssp SGCEEE-BSTTEEEEEETTSEEEEE-B-S
T ss_pred CceEEeecCCCeEEEEcCCccccCCCCCC
Confidence 35689999999999999999999876433
No 102
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=75.93 E-value=10 Score=25.00 Aligned_cols=57 Identities=19% Similarity=0.128 Sum_probs=38.5
Q ss_pred cceEEEEeeeeEEEEEecCCCc-EEEEEEcCCcEEEeCC---CCeeeeeeCCCCcEEEEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLPA---GIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~-~~~~~v~~GDli~iP~---g~~H~f~~~~~~~~~~ir~ 149 (160)
...+++|++|.......+.+++ .+...+.+|+++-..+ +..+.++......+.++++
T Consensus 35 ~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i 95 (115)
T cd00038 35 ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPRSATVRALTDSELLVL 95 (115)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCCCceEEEcCceEEEEE
Confidence 4679999999999988766543 5667788999986542 3444444444455555554
No 103
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=75.87 E-value=8.4 Score=32.45 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=35.7
Q ss_pred ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 94 EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 94 ~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
.-++++.+|.....-.+.+ .+.|.++.+|++|.+..|.+.+.+.
T Consensus 39 ~~li~v~~G~~~i~~~~g~----~l~i~~p~~~~~p~~~~~~~~~~~~ 82 (291)
T PRK15186 39 SVLIKLTTGKISITTSSGE----YITASGPMLIFLAKDQTIHITMEET 82 (291)
T ss_pred eEEEEeccceEEEEeCCCc----eEEeCCCeEEEEeCCcEEEEEeccc
Confidence 4678889898887765431 5999999999999999999987654
No 104
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=74.38 E-value=19 Score=27.36 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=35.8
Q ss_pred eecC-cceEEEEeeeeEEEEEecC------------CC------cEEEEEEcCCcEEEeCCCCeeeee
Q 031374 89 HIHA-DEEIRYCLEGSGYFDVRDE------------SD------QWIRIWIKAGDLIVLPAGIYHRFT 137 (160)
Q Consensus 89 H~H~-~~Ei~yvl~G~g~f~i~~~------------~~------~~~~~~v~~GDli~iP~g~~H~f~ 137 (160)
-.|. .-.|-|+++|+-.+.+... .| ..-.+.+.+|+++++.|+-.|+..
T Consensus 60 E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 60 TGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 4454 5678888888877766432 11 112688999999999999999976
No 105
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=71.90 E-value=15 Score=23.49 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=37.3
Q ss_pred cceEEEEeeeeEEEEEecCCCc-EEEEEEcCCcEEEeCCCC---eeeeeeCCCCcEEEEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLPAGI---YHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~-~~~~~v~~GDli~iP~g~---~H~f~~~~~~~~~~ir~ 149 (160)
...+++|++|.......+.+++ -+...+.+||++-..+-. ++.++........++++
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i 77 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRI 77 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEE
T ss_pred CCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEE
Confidence 6799999999999999877665 456788899987443321 23333333444555444
No 106
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=71.47 E-value=7.7 Score=25.29 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=32.4
Q ss_pred EEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374 96 IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL 138 (160)
Q Consensus 96 i~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~ 138 (160)
..-|.+|..+....+..+ .+.+.+||-+.+++|..=+..+
T Consensus 19 ~l~v~~G~vWlT~~g~~~---D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 19 RLRVESGRVWLTREGDPD---DYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEEEccccEEEECCCCCC---CEEECCCCEEEeCCCCEEEEEe
Confidence 377899999999987543 5888899999999998766555
No 107
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=71.32 E-value=22 Score=27.08 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=27.8
Q ss_pred ceEEEEeeeeEEEEEecCCCc-EEEEEEcCCcEEEeC
Q 031374 94 EEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLP 129 (160)
Q Consensus 94 ~Ei~yvl~G~g~f~i~~~~~~-~~~~~v~~GDli~iP 129 (160)
..+++|++|.......+.+|+ .+-..+.+||++=-+
T Consensus 27 ~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 27 DMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred CeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 569999999999888766665 555666999987543
No 108
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=70.78 E-value=5.9 Score=31.13 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=31.4
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ 148 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir 148 (160)
..-+.|+++|+..+...++ .+.+.+||.+++-. .+.........+.+++
T Consensus 135 ~~~l~~~~~G~~~i~~~~~-----~~~L~~~d~l~~~~--~~~~~l~~~g~ll~v~ 183 (184)
T PF05962_consen 135 STVLVYVLEGAWSITEGGN-----CISLSAGDLLLIDD--EEDLPLTGDGQLLWVS 183 (184)
T ss_dssp SEEEEEESSS-EEECCCEE-----EEEE-TT-EEEEES--EECEEEEEECCEEEEE
T ss_pred CEEEEEEeeCcEEEecCCC-----ceEcCCCCEEEEeC--CCceEecCCeeEEEEe
Confidence 4567899999766555545 89999999998877 4444555555555544
No 109
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=70.70 E-value=14 Score=31.18 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=36.7
Q ss_pred cccceecC-cceEEEEe---eeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 85 FYTEHIHA-DEEIRYCL---EGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 85 ~~~~H~H~-~~Ei~yvl---~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
-++.|.|+ ..|++|-. +++.-|...++.|+-=-+.|+-||.+++|+.-.|+-..+++
T Consensus 190 SyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~gt~~ 250 (276)
T PRK00924 190 TMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGVGTSN 250 (276)
T ss_pred CCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCcCccc
Confidence 37899998 55655522 23333444333333212889999999999999997655443
No 110
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.83 E-value=21 Score=25.13 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=34.8
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD 139 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~ 139 (160)
..|+.-|+.|...+.+.+. +.| ....+|..+-||++-.-.....
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs-~dW--q~~~~Ge~F~VpgnS~F~lqVa 84 (94)
T COG3123 41 APEEMTVVSGALTVLLPGS-DDW--QVYTAGEVFNVPGNSEFDLQVA 84 (94)
T ss_pred CceEEEEEeeEEEEEcCCC-ccc--EEecCCceEEcCCCCeEEEEEe
Confidence 5688999999999999865 445 5567999999999976655543
No 111
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=67.33 E-value=19 Score=28.77 Aligned_cols=58 Identities=14% Similarity=0.286 Sum_probs=38.8
Q ss_pred hcCcccceecCcc---eEEEEe--eeeEEEEEecC------------------CCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374 82 LKNFYTEHIHADE---EIRYCL--EGSGYFDVRDE------------------SDQWIRIWIKAGDLIVLPAGIYHRFTL 138 (160)
Q Consensus 82 ~~~~~~~H~H~~~---Ei~yvl--~G~g~f~i~~~------------------~~~~~~~~v~~GDli~iP~g~~H~f~~ 138 (160)
.+.+...|.|+.- =++|+. +|.|...+.+. ...++.+.-++||+|+.|+-..|....
T Consensus 105 ~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~H~v~p 184 (201)
T TIGR02466 105 QGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLRHEVPP 184 (201)
T ss_pred CCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCceecCC
Confidence 3677889999853 567766 33333333221 112556677999999999999999775
Q ss_pred C
Q 031374 139 D 139 (160)
Q Consensus 139 ~ 139 (160)
.
T Consensus 185 ~ 185 (201)
T TIGR02466 185 N 185 (201)
T ss_pred C
Confidence 3
No 112
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=66.22 E-value=3.7 Score=30.10 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.5
Q ss_pred EEEeee---eEEEEEecCCCcEEEEEEcCCcEEEeCCC
Q 031374 97 RYCLEG---SGYFDVRDESDQWIRIWIKAGDLIVLPAG 131 (160)
Q Consensus 97 ~yvl~G---~g~f~i~~~~~~~~~~~v~~GDli~iP~g 131 (160)
-|++.| +|.+.+++.. .-.+++||.|+|-+-
T Consensus 56 TYvI~g~~gSg~I~lNGAA----Ar~~~~GD~vII~sy 89 (111)
T cd06919 56 TYVIPGERGSGVICLNGAA----ARLGQPGDRVIIMAY 89 (111)
T ss_pred EEEEEcCCCCCEEEeCCHH----HhcCCCCCEEEEEEC
Confidence 466665 6999999875 688999999998653
No 113
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=65.38 E-value=24 Score=23.17 Aligned_cols=37 Identities=16% Similarity=0.025 Sum_probs=28.0
Q ss_pred cceEEEEeeeeEEEEEecCCC-cEEEEEEcCCcEEEeC
Q 031374 93 DEEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLP 129 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP 129 (160)
...++++++|.......+.++ ..+...+.+||++-..
T Consensus 35 ~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 35 GDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred CCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 467999999999888765444 4566788899988554
No 114
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=64.96 E-value=23 Score=29.92 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=33.1
Q ss_pred ecCcce-EEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeee
Q 031374 90 IHADEE-IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR 135 (160)
Q Consensus 90 ~H~~~E-i~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~ 135 (160)
.=...| .+..+.|.|.+.++++ .+.+.+.|.+.||.|..-.
T Consensus 70 fl~rrE~giV~lgG~~~V~vdG~-----~~~l~~~d~LYVp~G~~~v 111 (276)
T PRK00924 70 FLERRELGIINIGGAGTVTVDGE-----TYELGHRDALYVGKGAKEV 111 (276)
T ss_pred ecCCcEEEEEEccceEEEEECCE-----EEecCCCcEEEECCCCcEE
Confidence 334445 5677899999999987 8889999999999997744
No 115
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=63.91 E-value=33 Score=28.53 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=33.3
Q ss_pred ecCcceEEEEeeeeEEEEEec-CCCcEEEEEEcCC--------cEEEeCCCCeeeeeeCCC
Q 031374 90 IHADEEIRYCLEGSGYFDVRD-ESDQWIRIWIKAG--------DLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 90 ~H~~~Ei~yvl~G~g~f~i~~-~~~~~~~~~v~~G--------Dli~iP~g~~H~f~~~~~ 141 (160)
+-..|-...+|+|.+.+.+++ . ...+..- |.+.||.|..=...+.++
T Consensus 44 ~~~~E~~vv~l~G~~~v~~~g~~-----~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 44 LERRELGVVNLGGKATVTVDGEE-----FYELGGRESVFDGPPDALYVPRGTKVVIFASTD 99 (261)
T ss_dssp CCSEEEEEEEESSSEEEEETTEE-----EEEE-TTSSGGGS--EEEEE-TT--EEEEESST
T ss_pred CCCcEEEEEEeCCEEEEEeCCce-----EEEecccccccCCCCcEEEeCCCCeEEEEEcCC
Confidence 444566778889999999986 4 6667776 999999999977777554
No 116
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.52 E-value=2.7 Score=38.31 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=42.2
Q ss_pred ccceecCcceEEEEeeeeEEEEE--------------------ecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEE
Q 031374 86 YTEHIHADEEIRYCLEGSGYFDV--------------------RDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVK 145 (160)
Q Consensus 86 ~~~H~H~~~Ei~yvl~G~g~f~i--------------------~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~ 145 (160)
|..|+-+-+-+..-++|.-...+ .+-+..++...++|||+|.+|.|..|.....+...-.
T Consensus 331 faPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~~~vHSl 410 (629)
T KOG3706|consen 331 FAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTPALVHSL 410 (629)
T ss_pred CCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccccchhcee
Confidence 45566555556666677666555 2223458889999999999999999998765544333
Q ss_pred EE
Q 031374 146 VM 147 (160)
Q Consensus 146 ~i 147 (160)
.+
T Consensus 411 Hv 412 (629)
T KOG3706|consen 411 HV 412 (629)
T ss_pred EE
Confidence 33
No 117
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=63.07 E-value=23 Score=27.87 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=37.3
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeC---CCCeeeeeeCCCCcEEEEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLP---AGIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP---~g~~H~f~~~~~~~~~~ir~ 149 (160)
...+++|++|.........++...-..+.+||++-.. .+.++.++......+.++++
T Consensus 48 ~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i 107 (236)
T PRK09392 48 ADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMI 107 (236)
T ss_pred cceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEE
Confidence 4679999999998877654455666778899986432 24445555444455565555
No 118
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=61.74 E-value=4.8 Score=30.13 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=24.6
Q ss_pred EEEeee---eEEEEEecCCCcEEEEEEcCCcEEEeCCC
Q 031374 97 RYCLEG---SGYFDVRDESDQWIRIWIKAGDLIVLPAG 131 (160)
Q Consensus 97 ~yvl~G---~g~f~i~~~~~~~~~~~v~~GDli~iP~g 131 (160)
-|++.| +|.+.+++.. .-.+++||.|+|=+-
T Consensus 57 TYvI~G~~GSg~I~lNGAA----Arl~~~GD~VII~sy 90 (126)
T TIGR00223 57 TYAIAGKRGSRIICVNGAA----ARCVSVGDIVIIASY 90 (126)
T ss_pred EEEEEcCCCCCEEEeCCHH----HhcCCCCCEEEEEEC
Confidence 466665 6999999875 688999999998654
No 119
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=60.75 E-value=5.2 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=24.5
Q ss_pred EEEeee---eEEEEEecCCCcEEEEEEcCCcEEEeCCC
Q 031374 97 RYCLEG---SGYFDVRDESDQWIRIWIKAGDLIVLPAG 131 (160)
Q Consensus 97 ~yvl~G---~g~f~i~~~~~~~~~~~v~~GDli~iP~g 131 (160)
-|++.| +|.+.+++.. .-.+++||.|+|-+-
T Consensus 57 TYvI~g~~GSg~I~lNGAA----Ar~~~~GD~vII~ay 90 (126)
T PRK05449 57 TYVIAGERGSGVICLNGAA----ARLVQVGDLVIIAAY 90 (126)
T ss_pred EEEEEcCCCCCEEEeCCHH----HhcCCCCCEEEEEEC
Confidence 466664 6999999875 688999999998654
No 120
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=59.95 E-value=71 Score=23.92 Aligned_cols=59 Identities=27% Similarity=0.280 Sum_probs=33.7
Q ss_pred cceecC-cceEEEEeeeeEEEEEe-cC------------CC--------cEEEEEEcCCcEEEeCCCCeeeee--eCCCC
Q 031374 87 TEHIHA-DEEIRYCLEGSGYFDVR-DE------------SD--------QWIRIWIKAGDLIVLPAGIYHRFT--LDTSN 142 (160)
Q Consensus 87 ~~H~H~-~~Ei~yvl~G~g~f~i~-~~------------~~--------~~~~~~v~~GDli~iP~g~~H~f~--~~~~~ 142 (160)
..-.|. .--|-|+++|+=.+.+. .. .| .--.+.+++|+++++=|+-.|+-. .++..
T Consensus 62 ~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~~~~~~~~ 141 (153)
T PF04074_consen 62 RFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPGCAVDEPE 141 (153)
T ss_dssp -EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEEE-BTT--
T ss_pred ceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCccccccccCCCCc
Confidence 455664 67899999998888872 11 11 123678999999999999999955 44433
Q ss_pred cEE
Q 031374 143 YVK 145 (160)
Q Consensus 143 ~~~ 145 (160)
.++
T Consensus 142 ~v~ 144 (153)
T PF04074_consen 142 PVR 144 (153)
T ss_dssp B-E
T ss_pred eEE
Confidence 444
No 121
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=59.32 E-value=44 Score=26.27 Aligned_cols=37 Identities=11% Similarity=-0.028 Sum_probs=27.7
Q ss_pred cceEEEEeeeeEEEEEecCCCc-EEEEEEcCCcEEEeC
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLP 129 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~-~~~~~v~~GDli~iP 129 (160)
...+++|++|.......+.+|+ .+.-.+.+||++-..
T Consensus 49 ~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 49 PSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred CceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 4679999999998877666554 445568899987643
No 122
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=58.40 E-value=56 Score=24.47 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=26.6
Q ss_pred cceEEEEeeeeEEEEEecCCCc-EEEEEEcCCcEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIV 127 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~-~~~~~v~~GDli~ 127 (160)
..-+++|++|...+..-..+|+ .+-..+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 3568999999998887666554 5466789999874
No 123
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=57.59 E-value=5.6 Score=34.62 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEcCCcEEEeCCCCeeeeeeCC
Q 031374 117 RIWIKAGDLIVLPAGIYHRFTLDT 140 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~~H~f~~~~ 140 (160)
.+.++||+-|++|||++|.+-.+.
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~G~ 274 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLSGD 274 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEEEE
T ss_pred EEEecCCceEEecCCCcccccccc
Confidence 799999999999999999876544
No 124
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=56.31 E-value=55 Score=21.53 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=36.7
Q ss_pred EeeeeEEEEEecCCC-cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEE
Q 031374 99 CLEGSGYFDVRDESD-QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVK 145 (160)
Q Consensus 99 vl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~ 145 (160)
-..|.+++.|.+.++ ..+.-.+++||...++.+..=.+..+...-+.
T Consensus 4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~v~ 51 (77)
T PF13464_consen 4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGAVE 51 (77)
T ss_pred EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCcEE
Confidence 346999999997666 47888999999999988877777777655443
No 125
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=55.40 E-value=19 Score=29.18 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=40.9
Q ss_pred CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEE
Q 031374 84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147 (160)
Q Consensus 84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~i 147 (160)
..++.|+|-..|...|++|... ++++ ....||+..-+.++.|.-...+...|.|+
T Consensus 139 ~s~P~HtH~G~E~t~vl~G~~s----de~G-----~y~vgD~~~~d~~v~H~piv~~~~eClcl 193 (216)
T COG3806 139 RSFPDHTHVGIERTAVLEGAFS----DENG-----EYLVGDFTLADGTVQHSPIVLPPGECLCL 193 (216)
T ss_pred cccccccccceEEEEEEeeccc----cCCC-----ccccCceeecCCccccccccCCCCCceEE
Confidence 4578999999999999987532 2322 45579999999999999665555555555
No 126
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=51.22 E-value=58 Score=24.22 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=36.7
Q ss_pred eEEEEeeeeEEEEEecCCCcEEEE-EEcCCcEEEeCCCC---eeeeeeCCCCcEEEEEE
Q 031374 95 EIRYCLEGSGYFDVRDESDQWIRI-WIKAGDLIVLPAGI---YHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 95 Ei~yvl~G~g~f~i~~~~~~~~~~-~v~~GDli~iP~g~---~H~f~~~~~~~~~~ir~ 149 (160)
-+++|++|.........+++...+ .+.+||++-..+-. +..+++..-....++++
T Consensus 43 ~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~ 101 (214)
T COG0664 43 SLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEI 101 (214)
T ss_pred eEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcceEEEEEe
Confidence 489999999999988777664444 58999998776533 33444433333555544
No 127
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=50.19 E-value=16 Score=30.13 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=20.5
Q ss_pred EEEEEcCCcEEEeCCCCeeeeeeC
Q 031374 116 IRIWIKAGDLIVLPAGIYHRFTLD 139 (160)
Q Consensus 116 ~~~~v~~GDli~iP~g~~H~f~~~ 139 (160)
+.+.+++||+++.-+.+.|+...+
T Consensus 211 v~~~~~aGDvl~f~~~~~H~S~~N 234 (277)
T TIGR02408 211 STFTGKAGSAVWFDCNTMHGSGSN 234 (277)
T ss_pred eeeccCCceEEEEccccccCCCCC
Confidence 457789999999999999997643
No 128
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=49.04 E-value=87 Score=24.42 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=26.4
Q ss_pred cceEEEEeeeeEEEEEecCCCc-EEEEEEcCCcEEEe
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVL 128 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~-~~~~~v~~GDli~i 128 (160)
...+++|++|.......+.+++ .+...+.+||++-.
T Consensus 55 ~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 55 LKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred cceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 3578999999998777666554 45555689999853
No 129
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=48.67 E-value=44 Score=25.46 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=27.4
Q ss_pred eeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 101 EGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 101 ~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
.+.+.+.++++ .+..++|..+++-....|+..+.++
T Consensus 114 ~~~~~~~v~~~-----~~~w~~G~~~~fD~s~~H~~~N~~~ 149 (163)
T PF05118_consen 114 NPGCYIRVGGE-----TRHWREGECWVFDDSFEHEVWNNGD 149 (163)
T ss_dssp STTEEEEETTE-----EEB--CTEEEEE-TTS-EEEEESSS
T ss_pred CCCeEEEECCe-----EEEeccCcEEEEeCCEEEEEEeCCC
Confidence 46788999987 8999999999999999999887544
No 130
>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....
Probab=48.07 E-value=13 Score=26.27 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=16.8
Q ss_pred EEEEEecCCCcEEEEEEcCCcEEEeC
Q 031374 104 GYFDVRDESDQWIRIWIKAGDLIVLP 129 (160)
Q Consensus 104 g~f~i~~~~~~~~~~~v~~GDli~iP 129 (160)
+.+.+.+. .+.+++||+|.||
T Consensus 3 AIi~~ggk-----QykV~~gd~i~v~ 23 (96)
T PF00829_consen 3 AIIEIGGK-----QYKVEEGDVIDVE 23 (96)
T ss_dssp EEEESSSE-----EEEESSSEEEEEE
T ss_pred EEEEECCE-----EEEEeCCCEEEEC
Confidence 34566666 8999999999998
No 131
>PHA00672 hypothetical protein
Probab=47.51 E-value=79 Score=23.99 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=45.5
Q ss_pred cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEE
Q 031374 85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147 (160)
Q Consensus 85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~i 147 (160)
.+.--+|..+-+ .|++|.....++++ ...+..=-+|.-|||....+.+-++....++
T Consensus 59 ~LtG~~hkf~~~-ii~sG~itV~tdge-----~~rl~g~~~i~~~aG~KragyAHeDT~wt~~ 115 (152)
T PHA00672 59 ALTGALIKVSTV-LIFSGHATVFIGGE-----AVELRGYHVIPASAGRKQAFVAHADTDLTML 115 (152)
T ss_pred eeeeeeeEeeEE-EEecccEEEEeCCc-----EEEEecceeeecCCCcccceeeeccceEEEE
Confidence 345566776666 89999999999977 7888888999999999998888776655544
No 132
>PLN02868 acyl-CoA thioesterase family protein
Probab=47.34 E-value=1e+02 Score=26.90 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=28.2
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEe
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVL 128 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~i 128 (160)
...+++|++|+......+.+++.+-..+++||++-.
T Consensus 49 ~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 49 GDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred CceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 457999999999887766656666667799999864
No 133
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=47.08 E-value=55 Score=26.72 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=25.8
Q ss_pred EEEEEcCCcEEEeCCCCeeeeee-CCCCcEEEE
Q 031374 116 IRIWIKAGDLIVLPAGIYHRFTL-DTSNYVKVM 147 (160)
Q Consensus 116 ~~~~v~~GDli~iP~g~~H~f~~-~~~~~~~~i 147 (160)
..+..++||+|+.|....|.... +.+..+.+.
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~ 173 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASF 173 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeeccCccEEEEE
Confidence 37888999999999999999886 565555554
No 134
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=46.14 E-value=7.8 Score=28.66 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEeee---eEEEEEecCCCcEEEEEEcCCcEEEeCC
Q 031374 97 RYCLEG---SGYFDVRDESDQWIRIWIKAGDLIVLPA 130 (160)
Q Consensus 97 ~yvl~G---~g~f~i~~~~~~~~~~~v~~GDli~iP~ 130 (160)
-|++.| +|...+++.. .-.+++||.|+|=+
T Consensus 57 TYvI~g~~GSg~I~lNGaA----Arl~~~GD~vII~s 89 (116)
T PF02261_consen 57 TYVIPGERGSGVICLNGAA----ARLVQVGDRVIIMS 89 (116)
T ss_dssp EEEEEESTTTT-EEEEGGG----GGCS-TT-EEEEEE
T ss_pred EEEEEccCCCcEEEECCHH----HhccCCCCEEEEEE
Confidence 466654 6899999875 67889999998754
No 135
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=46.01 E-value=47 Score=27.82 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=29.2
Q ss_pred cEEEEEEcCCcEEEeCCCCeeeeeeCCC--C-c-EEEEEEecCC
Q 031374 114 QWIRIWIKAGDLIVLPAGIYHRFTLDTS--N-Y-VKVMQILSYG 153 (160)
Q Consensus 114 ~~~~~~v~~GDli~iP~g~~H~f~~~~~--~-~-~~~ir~f~~~ 153 (160)
+.+.+.++|||+++.-+.+.|+...+.. . + ..++|+..+.
T Consensus 207 ~~v~~~lkaGd~~~f~~~t~HgS~~N~S~~~~R~~~~~ry~~~~ 250 (288)
T TIGR01762 207 SAVPMQMKAGQFIIFWSTLMHASYPNSGESQMRMGFASRYVPSF 250 (288)
T ss_pred ceeeeeeCCceEEEECCCceecCCCCCCCCceEEEEEEEEcCCC
Confidence 4678999999999999999999765432 2 2 2356666553
No 136
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=45.44 E-value=41 Score=26.05 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=27.0
Q ss_pred eEEEEEec--CCCcEEEEEEcCCcEEEeCCC-CeeeeeeCC
Q 031374 103 SGYFDVRD--ESDQWIRIWIKAGDLIVLPAG-IYHRFTLDT 140 (160)
Q Consensus 103 ~g~f~i~~--~~~~~~~~~v~~GDli~iP~g-~~H~f~~~~ 140 (160)
.|.+.+.+ .+-.-+.+.+.+||+++..++ ..|..+.-.
T Consensus 113 ~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~~~~~Hgvtpv~ 153 (171)
T PF12851_consen 113 GGRLELPGLDPNILGVAFAYQPGTVLIFCAKRELHGVTPVE 153 (171)
T ss_pred CceEeccccccccCCEEEecCCCcEEEEcccceeeecCccc
Confidence 35555543 111345899999999999999 888887655
No 137
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.28 E-value=41 Score=24.12 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=36.0
Q ss_pred EeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcc
Q 031374 99 CLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQ 155 (160)
Q Consensus 99 vl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~ 155 (160)
|+.|.-+..|+++. +-..++||++-| ++...+.+|+-|.+-+-+|.
T Consensus 16 ilagrKTITIRD~S----EShf~~g~vlrV-------~r~Ed~~~fc~I~vl~vspv 61 (106)
T COG3097 16 ILAGRKTITIRDKS----ESHFKPGDVLRV-------GRFEDDRYFCTIEVLAVSPV 61 (106)
T ss_pred HhCCCceEEEeccc----hhcCCCCCEEEE-------EEecCCcEEEEEEEEEeccE
Confidence 68899999999886 567789998865 55667778888887777765
No 138
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=44.28 E-value=30 Score=24.83 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=17.5
Q ss_pred EEEEEecCCCcEEEEEEcCCcEEEeCC
Q 031374 104 GYFDVRDESDQWIRIWIKAGDLIVLPA 130 (160)
Q Consensus 104 g~f~i~~~~~~~~~~~v~~GDli~iP~ 130 (160)
+.+.+++. .+.+++||+|.|+.
T Consensus 3 AIi~~gGk-----QykV~~Gd~i~v~~ 24 (103)
T PRK05573 3 AIIKTGGK-----QYKVEEGDVIKVEK 24 (103)
T ss_pred EEEEECCE-----EEEEeCCCEEEEcc
Confidence 34667777 79999999999983
No 139
>PTZ00273 oxidase reductase; Provisional
Probab=43.70 E-value=42 Score=28.26 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=44.2
Q ss_pred cceecCcceEEEEe--eeeEEEEEecCCCcEEEEEEcCCcEEEeCCC-------------CeeeeeeCCCCcEEEEEEec
Q 031374 87 TEHIHADEEIRYCL--EGSGYFDVRDESDQWIRIWIKAGDLIVLPAG-------------IYHRFTLDTSNYVKVMQILS 151 (160)
Q Consensus 87 ~~H~H~~~Ei~yvl--~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g-------------~~H~f~~~~~~~~~~ir~f~ 151 (160)
....|++.-++-+| ++.+=..|...+|+|+.+...+|-+|+ .-| +.|+.......++.+.-|+.
T Consensus 196 g~~~HTD~g~lTlL~qd~~~GLqV~~~~g~Wi~V~p~pg~lvV-NvGD~l~~~TnG~~kSt~HRVv~~~~~R~Si~~F~~ 274 (320)
T PTZ00273 196 VCGEHTDYGIITLLYQDSVGGLQVRNLSGEWMDVPPLEGSFVV-NIGDMMEMWSNGRYRSTPHRVVNTGVERYSMPFFCE 274 (320)
T ss_pred ccccccCCCeEEEEecCCCCceEEECCCCCEEeCCCCCCeEEE-EHHHHHHHHHCCeeeCCCccccCCCCCeEEEEEEEc
Confidence 34568776555444 455556776667899999998887654 434 88988765556677766655
Q ss_pred CC
Q 031374 152 YG 153 (160)
Q Consensus 152 ~~ 153 (160)
..
T Consensus 275 p~ 276 (320)
T PTZ00273 275 PN 276 (320)
T ss_pred CC
Confidence 43
No 140
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=43.05 E-value=79 Score=27.47 Aligned_cols=36 Identities=14% Similarity=0.385 Sum_probs=29.4
Q ss_pred EEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374 117 RIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY 152 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~ 152 (160)
++.|.|+++-+||.|+.-+....+.++=.++.++..
T Consensus 174 rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 174 RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred ceeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 788999999999999999988777666666666543
No 141
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=40.69 E-value=47 Score=22.38 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.4
Q ss_pred EcCCcEEEeCC-CCeeeeeeC
Q 031374 120 IKAGDLIVLPA-GIYHRFTLD 139 (160)
Q Consensus 120 v~~GDli~iP~-g~~H~f~~~ 139 (160)
-++|++|+.++ ...|+.+.-
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v 86 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPV 86 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCccc
Confidence 89999999999 999998865
No 142
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=40.06 E-value=11 Score=28.09 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=22.0
Q ss_pred eeeEEEEEecCCCcEEEEEEcCCcEEEeCCC
Q 031374 101 EGSGYFDVRDESDQWIRIWIKAGDLIVLPAG 131 (160)
Q Consensus 101 ~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g 131 (160)
.|+|...+++.. .-.+++||.++|-+-
T Consensus 63 rGSg~I~lNGAA----Arl~~~GD~VII~sy 89 (126)
T COG0853 63 RGSGVICLNGAA----ARLVQVGDLVIIMSY 89 (126)
T ss_pred CCCcEEEechHH----HhhCCCCCEEEEEEc
Confidence 368999999875 688999999988654
No 143
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.80 E-value=51 Score=25.67 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=31.1
Q ss_pred eeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC-CcEEEEEEecCCcccC
Q 031374 100 LEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS-NYVKVMQILSYGVQRQ 157 (160)
Q Consensus 100 l~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~-~~~~~ir~f~~~p~w~ 157 (160)
++|++++.=.-. .-.++.||++++|=.+-=..+++.+ .|++ |+.+|.|.
T Consensus 109 v~GsAYlvgG~G-----~~~l~~~~ivl~PIR~GvG~RLG~nvGYl~----fT~~~twn 158 (160)
T PF06577_consen 109 VEGSAYLVGGVG-----MTYLRNGDIVLAPIRTGVGARLGANVGYLK----FTRKPTWN 158 (160)
T ss_pred ccceEEEEccce-----EEEEEeCCEEEEEeecCcceeeeeeeeeEe----ecCCCCcC
Confidence 677776644322 5677889999999766444444432 2222 77888885
No 144
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=39.53 E-value=1.4e+02 Score=24.25 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=40.0
Q ss_pred cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374 91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY 143 (160)
Q Consensus 91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~ 143 (160)
|-.+--..||+|+..-...+.-+ ....+|||....|.|....+...++..
T Consensus 117 h~ad~y~tIL~G~~~~~~~g~~~---~evy~pGd~~~l~rg~a~~y~m~~~tw 166 (216)
T PF04622_consen 117 HWADDYFTILSGEQWAWSPGSLE---PEVYKPGDSHHLPRGEAKQYQMPPGTW 166 (216)
T ss_pred eEeeeEEEEEEEEEEEEcCCCCC---ceEeccCCEEEecCceEEEEEeCCCeE
Confidence 45677888999998877665433 677889999999999999999886543
No 145
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=38.61 E-value=30 Score=24.74 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeee
Q 031374 102 GSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136 (160)
Q Consensus 102 G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f 136 (160)
|.+.|.|++. .+ .|++++.|.++..|-
T Consensus 6 ~~g~~~i~g~-----~y---~~~viv~p~~~~~w~ 32 (109)
T cd00248 6 GPGGFRIAGQ-----VY---RGPLLVLPDGVVPWD 32 (109)
T ss_pred cCCEEEECCE-----EE---eeCEEEeCCceeecC
Confidence 6778888866 55 499999999988873
No 146
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=38.19 E-value=40 Score=26.44 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=30.8
Q ss_pred EEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeee
Q 031374 97 RYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137 (160)
Q Consensus 97 ~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~ 137 (160)
..-++|+|.+.+.. .+..+++.|.+|+-++|.++-.=.++
T Consensus 133 ~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~ 172 (215)
T PF01987_consen 133 MLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWS 172 (215)
T ss_dssp EEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEE
T ss_pred EEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEEC
Confidence 34578999999985 57889999999999999888544443
No 147
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=36.02 E-value=25 Score=26.75 Aligned_cols=16 Identities=25% Similarity=0.696 Sum_probs=14.0
Q ss_pred EEEEcCCcEEEeCCCC
Q 031374 117 RIWIKAGDLIVLPAGI 132 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~ 132 (160)
.+.+++||.|+||..+
T Consensus 149 n~~L~~gD~I~Vp~~~ 164 (165)
T TIGR03027 149 NVELKPGDVLIIPESW 164 (165)
T ss_pred CceeCCCCEEEEeccc
Confidence 5889999999999864
No 148
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=34.23 E-value=1.3e+02 Score=23.23 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=30.2
Q ss_pred cceEEEEeeeeEEEEEecCCC--------------------cEEEEEEcCCcEEEeCCCCeeeee
Q 031374 93 DEEIRYCLEGSGYFDVRDESD--------------------QWIRIWIKAGDLIVLPAGIYHRFT 137 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~--------------------~~~~~~v~~GDli~iP~g~~H~f~ 137 (160)
.-.|-++++|+-.+.+..... .--.+.+.+|++++.=||-+|+..
T Consensus 69 YiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~ 133 (154)
T COG2731 69 YIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPG 133 (154)
T ss_pred eEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccc
Confidence 556777777765554432210 123688899999999999999865
No 149
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=34.10 E-value=53 Score=23.49 Aligned_cols=21 Identities=5% Similarity=0.275 Sum_probs=16.6
Q ss_pred EEEEEecCCCcEEEEEEcCCcEEEeC
Q 031374 104 GYFDVRDESDQWIRIWIKAGDLIVLP 129 (160)
Q Consensus 104 g~f~i~~~~~~~~~~~v~~GDli~iP 129 (160)
+.+.+++. .+.+++||+|.|+
T Consensus 2 AIi~~gGk-----QykV~~Gd~i~Ve 22 (101)
T TIGR00061 2 AIVEIGGK-----QYKVEEGQTVRIE 22 (101)
T ss_pred EEEEECCE-----EEEEeCCCEEEEc
Confidence 34566777 7899999999986
No 150
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=33.99 E-value=34 Score=21.54 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=18.9
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEe
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVL 128 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~i 128 (160)
.--+..|..| +...+-.. ...+++||.|++
T Consensus 27 ~~~i~~i~R~-~~~~~p~~-----~~~l~~gD~l~v 56 (71)
T PF02080_consen 27 GVRIVAIKRG-GEIIIPDG-----DTVLQAGDILIV 56 (71)
T ss_dssp TEEEEEEEET-EEEES--T-----T-BE-TTEEEEE
T ss_pred CEEEEEEEEC-CEEECCCC-----CCEECCCCEEEE
Confidence 5577778888 55444444 588899999876
No 151
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=32.58 E-value=1.1e+02 Score=23.66 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=28.9
Q ss_pred eeeeEEEEEecC--CCcEEEEEEcCCcEEEeCCCCeeee
Q 031374 100 LEGSGYFDVRDE--SDQWIRIWIKAGDLIVLPAGIYHRF 136 (160)
Q Consensus 100 l~G~g~f~i~~~--~~~~~~~~v~~GDli~iP~g~~H~f 136 (160)
|.-++.|.++.. +++...+.+..||+++.-....++|
T Consensus 128 LG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~sR~~~ 166 (169)
T TIGR00568 128 LGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGESRLAF 166 (169)
T ss_pred CCCCEEEEecCCcCCCceEEEEeCCCCEEEECCchhccc
Confidence 335888999864 3457899999999999988877655
No 152
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=32.27 E-value=73 Score=24.48 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=24.2
Q ss_pred EEEEcCCcEEE---------eCCCCeeee---eeCCCCcEEEEEE
Q 031374 117 RIWIKAGDLIV---------LPAGIYHRF---TLDTSNYVKVMQI 149 (160)
Q Consensus 117 ~~~v~~GDli~---------iP~g~~H~f---~~~~~~~~~~ir~ 149 (160)
...+++||+++ +|||.+|-- ....+..++||.+
T Consensus 96 sCPVepG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~~~LTCisf 140 (153)
T KOG4680|consen 96 SCPVEPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKGKELTCISF 140 (153)
T ss_pred cCCcCcCceeeeeeEeccCcCCCceEEEEEEeecCCCCEEEEEEE
Confidence 56788999874 799999953 2345567888876
No 153
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=30.85 E-value=88 Score=21.89 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=26.1
Q ss_pred eeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374 101 EGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 142 (160)
Q Consensus 101 ~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~ 142 (160)
=|.|...- +++.+...+++||.++.+..---.+..++..
T Consensus 43 VG~G~~~~---~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~~ 81 (95)
T PRK00364 43 VGPGRRLD---NGERVPLDVKVGDKVLFGKYAGTEVKIDGEE 81 (95)
T ss_pred ECCCeECC---CCCEeecccCCCCEEEEcCCCCeEEEECCEE
Confidence 46665532 3455678899999999987655566665543
No 154
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=30.75 E-value=77 Score=25.38 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=30.2
Q ss_pred eeeeEEEEEecCC--CcEEEEEEcCCcEEEeCCCCeeeee
Q 031374 100 LEGSGYFDVRDES--DQWIRIWIKAGDLIVLPAGIYHRFT 137 (160)
Q Consensus 100 l~G~g~f~i~~~~--~~~~~~~v~~GDli~iP~g~~H~f~ 137 (160)
+-..+.|.+++.. +.+.++.++.||+++.-....+.+.
T Consensus 139 Lg~~~~F~~~~~~r~~~~~~~~L~~Gdvvvm~G~~r~~~~ 178 (194)
T COG3145 139 LGAPCIFRLRGRRRRGPGLRLRLEHGDVVVMGGPSRLAWH 178 (194)
T ss_pred cCCCeEEEeccccCCCCceeEEecCCCEEEecCCcccccc
Confidence 3468899998876 7799999999999988777665544
No 155
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=30.47 E-value=1.2e+02 Score=21.97 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=36.6
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKV 146 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ 146 (160)
-.+..++-=|.|... ..++-+.+.+++||-+++|.----.+..+.+....+
T Consensus 43 ~~~g~VvavGpG~~~---~~G~~v~~~Vk~Gd~VLlpeygGt~V~l~~~~~~~~ 93 (104)
T KOG1641|consen 43 LLQGTVVAVGPGSRD---KGGEIVPVSVKVGDRVLLPEYGGTKVKLGDEDEYHL 93 (104)
T ss_pred cceEEEEEEcCcccc---CCCCCcCccccCCCEEEeeccCCcEEeccCCceeEE
Confidence 346677777777755 456667889999999999987777777765444433
No 156
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=30.45 E-value=1.8e+02 Score=24.95 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=42.5
Q ss_pred ceEEEEeeeeEEEEEecCCCcE-EEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374 94 EEIRYCLEGSGYFDVRDESDQW-IRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV 154 (160)
Q Consensus 94 ~Ei~yvl~G~g~f~i~~~~~~~-~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p 154 (160)
.++..-..|.|+..|.+.+|+. +.-..++|+.+-+....+-++..+....+.+- |.++|
T Consensus 252 ~~L~i~f~~d~Wv~V~da~Gk~l~~g~~~~G~~~~~~g~~p~~v~iG~~~~v~i~--~nG~~ 311 (331)
T PRK10856 252 NALVMNFTADCWLEVTDATGKKLFSGMQRKGGNLNLTGQAPYKLKIGAPAAVQIQ--YQGKP 311 (331)
T ss_pred ceEEEEEcCCeEEEEEeCCCcChhhhccCCCceEEecCCceEEEEEcCCCceEEE--ECCEE
Confidence 3677777999999999877764 44457999999988777777777766554432 55554
No 157
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=30.41 E-value=1.9e+02 Score=20.70 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=37.9
Q ss_pred ecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374 90 IHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 90 ~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~ 149 (160)
.+.+.-...+.+|...|.++...+ ...+..++. |..|..|...+........+++
T Consensus 17 ~~~dfial~L~~G~l~~~~~~G~~---~~~~~~~~~--i~dg~wh~v~~~r~~~~~~L~V 71 (131)
T PF00054_consen 17 DGKDFIALELRDGRLEFRYNLGSG---PASLRSPQK--INDGKWHTVSVSRNGRNGSLSV 71 (131)
T ss_dssp TTSSEEEEEEETTEEEEEEESSSE---EEEEEESSE--TTSSSEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEEECCEEEEEEeCCCc---cceecCCCc--cCCCcceEEEEEEcCcEEEEEE
Confidence 334667788889999999875433 566667775 8888999887755544444443
No 158
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=30.30 E-value=1.7e+02 Score=25.03 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=39.8
Q ss_pred cceecCcceEEEEe--eeeEEEEEecCCCcEEEEEEcCCcEEEeCCC------------CeeeeeeCC-CCcEEEEEEec
Q 031374 87 TEHIHADEEIRYCL--EGSGYFDVRDESDQWIRIWIKAGDLIVLPAG------------IYHRFTLDT-SNYVKVMQILS 151 (160)
Q Consensus 87 ~~H~H~~~Ei~yvl--~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g------------~~H~f~~~~-~~~~~~ir~f~ 151 (160)
..-.|++.-++-+| ++.+=..|...+|+|+.+...+|-+|+-=.. +.||..... ..++.+.-|+.
T Consensus 198 g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~~wTNg~~kSt~HRVv~~~~~~R~SiafF~~ 277 (335)
T PLN02156 198 GFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAG 277 (335)
T ss_pred CCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccCCCCcEEEEhHHHHHHHhCCeeeccceeeecCCCCCEEEEEEeec
Confidence 44568776555444 4555567765678999998888776654322 678876443 34555554443
No 159
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=30.08 E-value=55 Score=23.42 Aligned_cols=26 Identities=35% Similarity=0.693 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCcEEEEEEcCCcEEEeCCCCee-e
Q 031374 102 GSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH-R 135 (160)
Q Consensus 102 G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H-~ 135 (160)
|.|.|.|++. ++ .|++++.|.++.. |
T Consensus 6 ~~g~~~i~g~-----~y---~~sviv~p~~~~~~w 32 (109)
T cd05560 6 GDGYVEINDQ-----RY---EHSLIVTPDELITDW 32 (109)
T ss_pred cCCEEEECCE-----EE---ecCEEEECCceeecc
Confidence 6788888866 55 4999999998877 6
No 160
>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. This entry represents domain III. It is found in association with PF00648 from PFAM. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. ; PDB: 1QXP_B 2QFE_A 1DF0_A 1U5I_A 3DF0_A 3BOW_A 1KFU_L 1KFX_L.
Probab=29.73 E-value=42 Score=24.31 Aligned_cols=34 Identities=9% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcc
Q 031374 117 RIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQ 155 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~ 155 (160)
.+.+.+|+.++||.-. ..+....| .||+|+..|.
T Consensus 111 ~~~L~~G~YvIVPsT~----~~~~~g~F-~L~v~s~~~~ 144 (147)
T PF01067_consen 111 EFTLPPGTYVIVPSTY----EPGQEGEF-TLRVFSDSPF 144 (147)
T ss_dssp EEEE-SEEEEEEEEES----STT--EEE-EEEEEESSSE
T ss_pred EEEcCCCCEEEEEecC----CCCCeeeE-EEEEEECCCc
Confidence 5778899999998532 22332333 6788888764
No 161
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=27.94 E-value=1.3e+02 Score=24.33 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=29.3
Q ss_pred eeeeEEEEEecC--CCcEEEEEEcCCcEEEeCCCCeeeee
Q 031374 100 LEGSGYFDVRDE--SDQWIRIWIKAGDLIVLPAGIYHRFT 137 (160)
Q Consensus 100 l~G~g~f~i~~~--~~~~~~~~v~~GDli~iP~g~~H~f~ 137 (160)
|..++.|.+++. .++...+.+..||+++.-....+++.
T Consensus 149 LG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~H 188 (213)
T PRK15401 149 LGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYH 188 (213)
T ss_pred CCCCeEEEecccCCCCceEEEEeCCCCEEEECchHhheec
Confidence 446889999753 45688999999999999777666553
No 162
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=27.42 E-value=1.7e+02 Score=24.60 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=40.1
Q ss_pred ceecCcceEEEEe--e-eeEEEEEecCCCcEEEEEEcCCcEEEeCCC-------------CeeeeeeC-CCCcEEEEEEe
Q 031374 88 EHIHADEEIRYCL--E-GSGYFDVRDESDQWIRIWIKAGDLIVLPAG-------------IYHRFTLD-TSNYVKVMQIL 150 (160)
Q Consensus 88 ~H~H~~~Ei~yvl--~-G~g~f~i~~~~~~~~~~~v~~GDli~iP~g-------------~~H~f~~~-~~~~~~~ir~f 150 (160)
...|++.-.+-+| + +.+=..|. .+++|+.+...+|+-|+|.-| +.|+.... ...++.+.-|+
T Consensus 172 ~~~HtD~g~lTlL~q~~~v~GLqV~-~~g~Wi~V~p~p~~~lvVNvGD~L~~~Tng~~~S~~HRVv~~~~~~R~Si~~F~ 250 (303)
T PLN02403 172 LREHTDAGGIILLLQDDQVPGLEFL-KDGKWVPIPPSKNNTIFVNTGDQLEVLSNGRYKSTLHRVMADKNGSRLSIATFY 250 (303)
T ss_pred ccCccCCCeEEEEEecCCCCceEec-cCCeEEECCCCCCCEEEEEehHHHHHHhCCeeecccceeecCCCCCEEEEEEEE
Confidence 4468776544433 2 23445664 568899998888877777765 67887644 44556665555
Q ss_pred cC
Q 031374 151 SY 152 (160)
Q Consensus 151 ~~ 152 (160)
..
T Consensus 251 ~p 252 (303)
T PLN02403 251 NP 252 (303)
T ss_pred cC
Confidence 43
No 163
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=26.68 E-value=1.3e+02 Score=20.43 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.4
Q ss_pred EEEEcCCcEEEeCC
Q 031374 117 RIWIKAGDLIVLPA 130 (160)
Q Consensus 117 ~~~v~~GDli~iP~ 130 (160)
++.+.+||.|+|-+
T Consensus 44 ~i~I~~GD~V~Ve~ 57 (75)
T COG0361 44 RIRILPGDVVLVEL 57 (75)
T ss_pred eEEeCCCCEEEEEe
Confidence 68888999988754
No 164
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=26.57 E-value=1.9e+02 Score=21.85 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=29.4
Q ss_pred cccceecCc----ceEEEEee--eeEEEEEecC--CCcEEEEEEcCCcEEEeCCCC
Q 031374 85 FYTEHIHAD----EEIRYCLE--GSGYFDVRDE--SDQWIRIWIKAGDLIVLPAGI 132 (160)
Q Consensus 85 ~~~~H~H~~----~Ei~yvl~--G~g~f~i~~~--~~~~~~~~v~~GDli~iP~g~ 132 (160)
....|.=.. ...+..++ +++.|.++.. .+..+.+.+..||+++.....
T Consensus 109 ~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~ 164 (194)
T PF13532_consen 109 GIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEA 164 (194)
T ss_dssp -EEEE---TTC-CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE-TTEEEEEETTH
T ss_pred CcCCCCCcccccCCCcEEEEEEccCceEEEeeccCCCccEEEEcCCCCEEEeChHH
Confidence 455666332 23444444 5888888865 367999999999999998774
No 165
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=26.40 E-value=1.5e+02 Score=28.31 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=35.9
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEE---EeCCCCeeeeeeCCCCcEEEEEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLI---VLPAGIYHRFTLDTSNYVKVMQI 149 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli---~iP~g~~H~f~~~~~~~~~~ir~ 149 (160)
.+++++|++|+........+.+.+--.+++||++ .+-.|.+..++.........+++
T Consensus 415 ~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l 474 (823)
T PLN03192 415 PDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRL 474 (823)
T ss_pred CceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEE
Confidence 4579999999998765433333444568999986 23345555566555555555555
No 166
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.40 E-value=1.1e+02 Score=29.47 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=28.6
Q ss_pred cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEE
Q 031374 93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLI 126 (160)
Q Consensus 93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli 126 (160)
-.+++||+.|+....-.+.++.-....+++||++
T Consensus 460 v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 460 VTDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred cceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 5799999999998877765556678999999987
No 167
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=26.36 E-value=1.9e+02 Score=23.58 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=21.7
Q ss_pred EEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374 117 RIWIKAGDLIVLPAGIYHRFTLDTS 141 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~~H~f~~~~~ 141 (160)
++.+-+||+|+-|.-..|..+.-..
T Consensus 145 ~VklPAGdLVlypStSlH~VtPVTR 169 (229)
T COG3128 145 RVKLPAGDLVLYPSTSLHEVTPVTR 169 (229)
T ss_pred EEeccCCCEEEcccccceecccccc
Confidence 7889999999999999999886443
No 168
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=26.34 E-value=66 Score=23.93 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=29.7
Q ss_pred eecC-cceEEEEeeeeEEEEEecC-C--------------------CcEEEEEEcCCcEEEeCCCCeeeee
Q 031374 89 HIHA-DEEIRYCLEGSGYFDVRDE-S--------------------DQWIRIWIKAGDLIVLPAGIYHRFT 137 (160)
Q Consensus 89 H~H~-~~Ei~yvl~G~g~f~i~~~-~--------------------~~~~~~~v~~GDli~iP~g~~H~f~ 137 (160)
-.|. .--|-|+++|+=++.+... . ..-..+.+++|++++.-|+-.|.-.
T Consensus 64 E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~~y~~~~D~~f~~~~~~~~~i~l~~G~faiffP~D~H~P~ 134 (142)
T TIGR00022 64 ELHHRYLDIQLLLRGEENIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHKPG 134 (142)
T ss_pred hhhhheEEEEEeecceEEEEEecCccccccccCCCcCCCEEeccCCCCceEEEeCCCcEEEECCCCccccc
Confidence 3443 5577888888877776311 0 1123466677777777777777653
No 169
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=26.05 E-value=86 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374 113 DQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 142 (160)
Q Consensus 113 ~~~~~~~v~~GDli~iP~g~~H~f~~~~~~ 142 (160)
++.+...++.||.++.|..-.-.+..+...
T Consensus 51 g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T cd00320 51 GERVPLSVKVGDKVLFPKYAGTEVKLDGEE 80 (93)
T ss_pred CCCccccccCCCEEEECCCCceEEEECCEE
Confidence 344577899999999998765556665543
No 170
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.79 E-value=68 Score=27.46 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374 115 WIRIWIKAGDLIVLPAGIYHRFTLD 139 (160)
Q Consensus 115 ~~~~~v~~GDli~iP~g~~H~f~~~ 139 (160)
.+.+.|+|||+|+..+.+.|....+
T Consensus 192 ~~pv~lekGDallF~~~L~HaA~aN 216 (299)
T COG5285 192 AVPVELEKGDALLFNGSLWHAAGAN 216 (299)
T ss_pred ceeeeecCCCEEEEcchhhhhhhcC
Confidence 4579999999999999999986543
No 171
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=25.28 E-value=56 Score=22.62 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=25.1
Q ss_pred EeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374 99 CLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT 140 (160)
Q Consensus 99 vl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~ 140 (160)
|-=|.|... .++.-+...++.||.+++|..--=.+..+.
T Consensus 40 vaVG~G~~~---~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~ 78 (93)
T PF00166_consen 40 VAVGPGRYN---ENGEEVPMDVKVGDKVLFPKYAGTEVKFDG 78 (93)
T ss_dssp EEE-SEEET---TTSSEEETSS-TTSEEEEETTTSEEEEETT
T ss_pred EEcCCcccc---CCCcEeeeeeeeccEEeccccCceEEEECC
Confidence 333777765 344455678899999999988766666643
No 172
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=25.06 E-value=67 Score=23.38 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeee
Q 031374 102 GSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR 135 (160)
Q Consensus 102 G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~ 135 (160)
|.|.+.|++. ++. +|+|+.|.|+.-|
T Consensus 6 ~~G~i~i~g~-----~y~---~~viv~p~~~~~w 31 (117)
T cd05126 6 SFGSITVGGE-----TYE---HDIVVYPDGSRAR 31 (117)
T ss_pred cCCEEEECCE-----EEc---CCEEEeCCccccc
Confidence 6788888876 554 9999999988644
No 173
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=24.55 E-value=27 Score=33.85 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.9
Q ss_pred EEEEcCCcEEEeCCCCeeeeee
Q 031374 117 RIWIKAGDLIVLPAGIYHRFTL 138 (160)
Q Consensus 117 ~~~v~~GDli~iP~g~~H~f~~ 138 (160)
.+.=..||.|+||||.+|...+
T Consensus 800 tfvQ~LGdAVfIPAGaPHQVrN 821 (889)
T KOG1356|consen 800 TFVQFLGDAVFIPAGAPHQVRN 821 (889)
T ss_pred chhhcccceEEecCCCcHHhhh
Confidence 6666789999999999998764
No 174
>COG0756 Dut dUTPase [Nucleotide transport and metabolism]
Probab=24.07 E-value=82 Score=24.24 Aligned_cols=34 Identities=32% Similarity=0.674 Sum_probs=25.3
Q ss_pred EEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCe
Q 031374 97 RYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIY 133 (160)
Q Consensus 97 ~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~ 133 (160)
-|-.+|++-++++...+. +.+.||...+||-|+.
T Consensus 20 ~y~t~gsAG~DLrA~~~~---~~i~pg~~~LVpTGl~ 53 (148)
T COG0756 20 KYATEGSAGYDLRAAEDE---VTIAPGERKLVPTGLA 53 (148)
T ss_pred eeecCCccceeeecccce---eEECCCCeEEecCCEE
Confidence 467889988998865422 7888888887777753
No 175
>CHL00075 rpl21 ribosomal protein L21
Probab=23.96 E-value=92 Score=22.57 Aligned_cols=20 Identities=10% Similarity=0.552 Sum_probs=14.7
Q ss_pred EEEEecCCCcEEEEEEcCCcEEEeC
Q 031374 105 YFDVRDESDQWIRIWIKAGDLIVLP 129 (160)
Q Consensus 105 ~f~i~~~~~~~~~~~v~~GDli~iP 129 (160)
.+.+++. .+.+++||+|.|+
T Consensus 6 Ii~~gGk-----QykV~~Gd~i~ve 25 (108)
T CHL00075 6 IIEAGGK-----QLWVEPGRFYDIN 25 (108)
T ss_pred EEEECCE-----EEEEeCCCEEEEE
Confidence 3556666 7888888888875
No 176
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=23.78 E-value=3.5e+02 Score=20.93 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=40.6
Q ss_pred eecC-cceEEEEeeeeEEEEEecCC-----CcEEEEEEcCCcEEEeCCCCeeee--eeCCCCcE
Q 031374 89 HIHA-DEEIRYCLEGSGYFDVRDES-----DQWIRIWIKAGDLIVLPAGIYHRF--TLDTSNYV 144 (160)
Q Consensus 89 H~H~-~~Ei~yvl~G~g~f~i~~~~-----~~~~~~~v~~GDli~iP~g~~H~f--~~~~~~~~ 144 (160)
-.|. .-|.+.-+.|..++-+-..+ ++.-.+.+.+|+.|.+-+|+.|.. .++....|
T Consensus 74 ERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF 137 (162)
T PRK03606 74 ERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDF 137 (162)
T ss_pred EeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceE
Confidence 3454 46778888888887775432 346679999999999999999974 34444445
No 177
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=23.68 E-value=1.2e+02 Score=26.65 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374 112 SDQWIRIWIKAGDLIVLPAGIYHRFTL 138 (160)
Q Consensus 112 ~~~~~~~~v~~GDli~iP~g~~H~f~~ 138 (160)
+.+-|++.++||..++||.|=.|..-+
T Consensus 259 E~kPIEc~q~pGEt~fVP~GWWHvVlN 285 (407)
T KOG2130|consen 259 EYKPIECLQKPGETMFVPSGWWHVVLN 285 (407)
T ss_pred ccCCceeeecCCceEEecCCeEEEEec
Confidence 456789999999999999999997654
No 178
>CHL00010 infA translation initiation factor 1
Probab=21.48 E-value=1.1e+02 Score=20.55 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=9.5
Q ss_pred EEEEcCCcEEEeC
Q 031374 117 RIWIKAGDLIVLP 129 (160)
Q Consensus 117 ~~~v~~GDli~iP 129 (160)
.+.+..||.+.+-
T Consensus 44 ~i~~~vGD~V~ve 56 (78)
T CHL00010 44 SIRILPGDRVKVE 56 (78)
T ss_pred CcccCCCCEEEEE
Confidence 3556789998775
No 179
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=21.38 E-value=2.6e+02 Score=18.55 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=23.7
Q ss_pred eeEEEEEecCCCcEEEEEEcCCcEEEeCCC------------CeeeeeeCC-CCcEEEEEEe
Q 031374 102 GSGYFDVRDESDQWIRIWIKAGDLIVLPAG------------IYHRFTLDT-SNYVKVMQIL 150 (160)
Q Consensus 102 G~g~f~i~~~~~~~~~~~v~~GDli~iP~g------------~~H~f~~~~-~~~~~~ir~f 150 (160)
+.+-+.+.. .++|+.+...++.+++.... ..|+..... ..++.+..|+
T Consensus 36 ~~~gL~~~~-~~~~~~v~~~~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~ 96 (98)
T PF03171_consen 36 EVGGLQVRD-DGEWVDVPPPPGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFL 96 (98)
T ss_dssp STS-EEEEE-TTEEEE----TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEE
T ss_pred cchheeccc-cccccCccCccceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEE
Confidence 555555553 34888899988866665555 678887654 5666665444
No 180
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=21.35 E-value=5e+02 Score=21.83 Aligned_cols=72 Identities=21% Similarity=0.170 Sum_probs=47.9
Q ss_pred CCceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCC-----CcEEEEEEcCCcEEEeCCCCeee
Q 031374 61 GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDES-----DQWIRIWIKAGDLIVLPAGIYHR 135 (160)
Q Consensus 61 gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~-----~~~~~~~v~~GDli~iP~g~~H~ 135 (160)
+|++-++..+.++. .+.+-+-+.+-++.++.|++.....+.. ++---+.=+|-|.+.||+|..-.
T Consensus 27 ~YVGF~~~~L~~Ge----------s~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~ 96 (270)
T COG3718 27 EYVGFRLLRLAAGE----------SATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFS 96 (270)
T ss_pred eeEEEEEEEccCCC----------cccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEE
Confidence 57777777777653 2333444456677778999998887642 11112334466999999999988
Q ss_pred eeeCCCC
Q 031374 136 FTLDTSN 142 (160)
Q Consensus 136 f~~~~~~ 142 (160)
.++...-
T Consensus 97 vtA~t~~ 103 (270)
T COG3718 97 VTATTDL 103 (270)
T ss_pred EEeecce
Confidence 8876653
No 181
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=20.88 E-value=2e+02 Score=24.16 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=30.1
Q ss_pred eEEEE-eeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCee-eee
Q 031374 95 EIRYC-LEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH-RFT 137 (160)
Q Consensus 95 Ei~yv-l~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H-~f~ 137 (160)
|+-.| +.|.|...++++ .+.+.+.|.+.|-.|-.- .|.
T Consensus 77 ElgiINIG~~G~i~v~g~-----~y~l~~rd~LYvg~G~~dv~F~ 116 (278)
T COG3717 77 ELGIINIGGPGTITVDGQ-----EYELGHRDALYVGMGAKDVTFS 116 (278)
T ss_pred eeeEEeeCCCceEEECCE-----EEEeccccEEEEecCccceEEe
Confidence 44444 678999999998 999999999999999443 344
No 182
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.82 E-value=1e+02 Score=20.20 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.9
Q ss_pred HhHHhhcCcEEEecCCCC
Q 031374 29 LDQLAELGVLYWRLNPKN 46 (160)
Q Consensus 29 ~~~L~~~GV~~w~~~~~~ 46 (160)
+..|++.||+|-.++..+
T Consensus 16 A~~La~~GIRFVpiPv~~ 33 (61)
T PF07131_consen 16 AHSLAHIGIRFVPIPVVT 33 (61)
T ss_pred HHHHHHcCceeecccccc
Confidence 567899999999988654
No 183
>PF13550 Phage-tail_3: Putative phage tail protein
Probab=20.19 E-value=78 Score=23.12 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=17.9
Q ss_pred eEEEEEecCCCcEEEEEEcCCcEEEeCCC
Q 031374 103 SGYFDVRDESDQWIRIWIKAGDLIVLPAG 131 (160)
Q Consensus 103 ~g~f~i~~~~~~~~~~~v~~GDli~iP~g 131 (160)
+..|.+.-. ...+++||+|.|+-.
T Consensus 128 t~~f~~~~~-----~~~l~pGDvi~l~~~ 151 (164)
T PF13550_consen 128 TVSFTLPPD-----GLALEPGDVIALSDD 151 (164)
T ss_pred EEEEEEChh-----hccCCCCCEEEEEeC
Confidence 455666655 688999999998755
Done!