BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031378
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GN3|A Chain A, Crystal Structure Of A Putative Protein-Disulfide
Isomerase From Pseudomonas Syringae To 2.5a Resolution.
pdb|3GN3|B Chain B, Crystal Structure Of A Putative Protein-Disulfide
Isomerase From Pseudomonas Syringae To 2.5a Resolution
Length = 182
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 52 EKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRG 111
E P + T ++ I +++ G+ AL F++ + + K++ G
Sbjct: 100 EHHAGGPNLDATPNDIIARIERYS--GL------ALAEAFANPELEHAVKWHTKYARQNG 151
Query: 112 VYATPTFFVNGFSLAG--AGSPL 132
++ +PTF +NG G +G P+
Sbjct: 152 IHVSPTFMINGLVQPGMSSGDPV 174
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 30.8 bits (68), Expect = 0.31, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 45 LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 93
L I ++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 34 FLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 82
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 0.31, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 45 LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 93
L I ++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 40 FLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 88
>pdb|2YGS|A Chain A, Card Domain From Apaf-1
Length = 92
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 46 LEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 93
L I ++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 35 LTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 82
>pdb|3YGS|C Chain C, Apaf-1 Card In Complex With Prodomain Of Procaspase-9
Length = 95
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 46 LEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 93
L I ++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 35 LTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 82
>pdb|1CY5|A Chain A, Crystal Structure Of The Apaf-1 Card
pdb|1C15|A Chain A, Solution Structure Of Apaf-1 Card
Length = 97
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 46 LEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 93
L I ++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 35 LTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 82
>pdb|2P1H|A Chain A, Rapid Folding And Unfolding Of Apaf-1 Card
Length = 94
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 46 LEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 93
L I ++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 37 LTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84
>pdb|1CWW|A Chain A, Solution Structure Of The Caspase Recruitment Domain
(Card) From Apaf-1
Length = 102
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 46 LEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 93
L I ++EK N PTQ ++K I+K + + Y++ L G+ D
Sbjct: 40 LTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 87
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 7 VAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEI 48
VAA SIY+ +A YFRD+ L+ R L EI
Sbjct: 296 VAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREI 337
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 7 VAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEI 48
VAA SIY+ +A YFRD+ L+ R L EI
Sbjct: 296 VAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREI 337
>pdb|3G6O|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
pdb|3G6O|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
Length = 505
Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 45 LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSF 104
+L ++++ N P N T + + + IG+SY F R+ D L+ SF
Sbjct: 68 VLRMLEEGLTGNGPWSNSVETRIGEHLFDV----IGHSYKEVFYLEFEIRTADTLSITSF 123
Query: 105 KFSATR 110
+A R
Sbjct: 124 TLNAQR 129
>pdb|3C2W|A Chain A, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|B Chain B, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|C Chain C, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|D Chain D, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|E Chain E, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|F Chain F, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|G Chain G, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|H Chain H, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3NHQ|A Chain A, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|B Chain B, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|C Chain C, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|D Chain D, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|E Chain E, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|F Chain F, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|G Chain G, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|H Chain H, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NOP|C Chain C, Light-Induced Intermediate Structure L1 Of Pseudomonas
Aeruginosa Bacteriophytochrome
pdb|3NOT|C Chain C, Light-Induced Intermediate Structure L2 Of P. Aeruginosa
Bacteriophytochrome
pdb|3NOU|C Chain C, Light-Induced Intermediate Structure L3 Of P. Aeruginosa
Bacteriophytochrome
Length = 505
Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 45 LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSF 104
+L ++++ N P N T + + + IG+SY F R+ D L+ SF
Sbjct: 68 VLRMLEEGLTGNGPWSNSVETRIGEHLFDV----IGHSYKEVFYLEFEIRTADTLSITSF 123
Query: 105 KFSATR 110
+A R
Sbjct: 124 TLNAQR 129
>pdb|2VJI|A Chain A, Tailspike Protein Of E.Coli Bacteriophage Hk620
pdb|2VJJ|A Chain A, Tailspike Protein Of E.Coli Bacteriophage Hk620 In Complex
With Hexasaccharide
pdb|2X85|A Chain A, Tailspike Protein Of E. Coli Bacteriophage Hk620 In
Complex With Hexasaccharide
Length = 600
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 30 CFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQN-MTRTAVVKEIVKFAAEGIG-NSYSSAL 87
C+F + R + C +E+ Q + FY T N R A V V AAE G SY+ +
Sbjct: 246 CYFSMSSSFARNIACSVELHQHDTFYRGSTVNGYCRGAYV---VMHAAEAAGAGSYAYNM 302
Query: 88 E 88
+
Sbjct: 303 Q 303
>pdb|2X6Y|A Chain A, Tailspike Protein Mutant D339a Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
Length = 600
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 30 CFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQN-MTRTAVVKEIVKFAAEGIG-NSYSSAL 87
C+F + R + C +E+ Q + FY T N R A V V AAE G SY+ +
Sbjct: 246 CYFSMSSSFARNIACSVELHQHDTFYRGSTVNGYCRGAYV---VMHAAEAAGAGSYAYNM 302
Query: 88 E 88
+
Sbjct: 303 Q 303
>pdb|2X6X|A Chain A, Tailspike Protein Mutant D339n Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
Length = 600
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 30 CFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQN-MTRTAVVKEIVKFAAEGIG-NSYSSAL 87
C+F + R + C +E+ Q + FY T N R A V V AAE G SY+ +
Sbjct: 246 CYFSMSSSFARNIACSVELHQHDTFYRGSTVNGYCRGAYV---VMHAAEAAGAGSYAYNM 302
Query: 88 E 88
+
Sbjct: 303 Q 303
>pdb|3IBR|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
pdb|3IBR|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
Length = 505
Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 56 NAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATR 110
N P N T + + + IG+SY F R+ D L+ SF +A R
Sbjct: 79 NGPWSNSVETRIGEHLFDV----IGHSYKEVFYLEFEIRTADTLSITSFTLNAQR 129
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 26.2 bits (56), Expect = 8.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 60 QNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 93
Q + A +KE+ FAA+ IG Y A+ + FS+
Sbjct: 71 QKLAAHAAIKEVPAFAADAIG--YLDAIVANFSE 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,353,452
Number of Sequences: 62578
Number of extensions: 162977
Number of successful extensions: 470
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 23
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)