BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031378
         (160 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0C6D1|IRGB_VIBCH Iron-regulated virulence regulatory protein IrgB OS=Vibrio cholerae
           serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
           GN=irgB PE=3 SV=1
          Length = 298

 Score = 33.5 bits (75), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 82  SYS-SALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLD-YNGWR 138
           SYS  ALES      +D L   +   +  RG+   PT+F NGF  A  GS +   NGW+
Sbjct: 208 SYSLPALESRLQ---SDNLAMQADAIAKGRGIGLLPTWFANGFETAHPGSLIPCVNGWQ 263


>sp|A5F9F9|IRGB_VIBC3 Iron-regulated virulence regulatory protein IrgB OS=Vibrio cholerae
           serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
           GN=irgB PE=4 SV=1
          Length = 298

 Score = 33.5 bits (75), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 82  SYS-SALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLD-YNGWR 138
           SYS  ALES      +D L   +   +  RG+   PT+F NGF  A  GS +   NGW+
Sbjct: 208 SYSLPALESRLQ---SDNLAMQADAIAKGRGIGLLPTWFANGFETAHPGSLIPCVNGWQ 263


>sp|O14727|APAF_HUMAN Apoptotic protease-activating factor 1 OS=Homo sapiens GN=APAF1
          PE=1 SV=2
          Length = 1248

 Score = 30.8 bits (68), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 45 LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 93
           L I ++EK  N PTQ      ++K I+K   +   + Y++ L  G+ D
Sbjct: 34 FLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 82


>sp|A4SXF2|SYE_POLSQ Glutamate--tRNA ligase OS=Polynucleobacter necessarius subsp.
           asymbioticus (strain DSM 18221 / CIP 109841 /
           QLW-P1DMWA-1) GN=gltX PE=3 SV=1
          Length = 468

 Score = 30.4 bits (67), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 31  FFLVVLYIKRRLNCLLEIVQQEKFYNAPTQNMTRTAVVKEIVKF-------------AAE 77
           F  VV  +K R N L+EI +  K + A   N+T+  + + I +               A+
Sbjct: 347 FIQVVGLLKDRANTLIEIAEGAKLFYATAPNLTKDQITENISEAIVPALKDLIEALKNAD 406

Query: 78  GIGNSYSSA 86
           G   SYS+A
Sbjct: 407 GTKESYSAA 415


>sp|B9JYP8|ADE_AGRVS Adenine deaminase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846)
           GN=Avi_0230 PE=3 SV=1
          Length = 332

 Score = 30.0 bits (66), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 34  VVLYIKRRLNCLLEIVQQEKFYNAPTQNMT----RTAVVKEIVKFAAEGIGNSYSSALES 89
           VVL +    N  L++   E + + P +++T    R  +  +   F A  + N Y+ A   
Sbjct: 232 VVLEVCPASNIALKVF--EDYASHPMRDLTDAGVRVCINSDDPPFFATSLANDYAIAASM 289

Query: 90  GFSDRSTDLLTRVSFK 105
           GFSD   D +TR + +
Sbjct: 290 GFSDVEIDAMTRTAIE 305


>sp|A5IYF2|LON_MYCAP Lon protease OS=Mycoplasma agalactiae (strain PG2) GN=lon PE=3 SV=1
          Length = 996

 Score = 29.6 bits (65), Expect = 7.5,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 11/106 (10%)

Query: 45  LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSF 104
           L ++   EK Y+  +Q     A +K I K+  + I        E   S  S D+  ++  
Sbjct: 91  LCQVESVEKVYDNGSQKWHYIATLKAIHKYILQDIYGD-----EETISSSSIDI-EKLPL 144

Query: 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK 148
           K+    G+ AT  F    NG  +A A   LD+NG+ +VI+ L+ ++
Sbjct: 145 KY--IEGMVAT-RFGSENNGDEMALADPSLDFNGFEEVINTLIYDR 187


>sp|P52349|VP19_HHV7J Triplex capsid protein VP19C OS=Human herpesvirus 7 (strain JI)
           GN=U29 PE=3 SV=1
          Length = 286

 Score = 29.3 bits (64), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 21  ASYFRDKFVCFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQNMTRTAVVKEIV 72
            SY  +K V  F V  YI +  NCL+  V Q   Y+   +N+    ++K+++
Sbjct: 117 CSYLEEK-VSLFGVTNYISQGTNCLISCVMQGHVYDVRKENIYGLVILKDLL 167


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.139    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,122,135
Number of Sequences: 539616
Number of extensions: 2079913
Number of successful extensions: 6093
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6092
Number of HSP's gapped (non-prelim): 8
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)