Query 031378
Match_columns 160
No_of_seqs 142 out of 695
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 13:15:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2761 FrnE Predicted dithiol 99.4 7.3E-12 1.6E-16 101.1 13.3 117 30-155 103-223 (225)
2 cd03024 DsbA_FrnE DsbA family, 99.4 4.4E-12 9.6E-17 98.7 9.9 104 30-142 95-201 (201)
3 cd03022 DsbA_HCCA_Iso DsbA fam 99.3 3.7E-11 8E-16 92.6 11.4 103 29-141 85-191 (192)
4 COG3531 Predicted protein-disu 99.3 2.3E-11 5.1E-16 96.1 9.8 119 22-146 79-210 (212)
5 cd03023 DsbA_Com1_like DsbA fa 99.3 2.8E-11 6.1E-16 89.3 9.6 96 30-142 52-154 (154)
6 PF01323 DSBA: DSBA-like thior 99.3 5.9E-11 1.3E-15 91.4 10.8 104 30-142 87-193 (193)
7 PRK10954 periplasmic protein d 99.2 1.5E-10 3.2E-15 92.0 11.4 76 71-148 126-207 (207)
8 cd03019 DsbA_DsbA DsbA family, 99.2 3.8E-10 8.2E-15 85.9 11.2 109 29-147 62-175 (178)
9 PF13743 Thioredoxin_5: Thiore 99.2 1.2E-10 2.5E-15 90.8 8.2 95 30-130 65-170 (176)
10 PF13462 Thioredoxin_4: Thiore 99.1 3.8E-10 8.3E-15 84.5 8.6 60 80-143 103-162 (162)
11 cd03025 DsbA_FrnE_like DsbA fa 99.1 9.8E-10 2.1E-14 84.9 8.7 87 29-121 86-176 (193)
12 COG1651 DsbG Protein-disulfide 98.8 1.3E-08 2.7E-13 82.0 7.7 58 85-145 186-243 (244)
13 COG3917 NahD 2-hydroxychromene 98.3 9.2E-06 2E-10 63.8 10.4 103 30-145 95-201 (203)
14 cd03021 DsbA_GSTK DsbA family, 98.2 8.6E-06 1.9E-10 64.5 9.1 88 30-121 90-186 (209)
15 PRK10877 protein disulfide iso 98.0 1.1E-05 2.4E-10 65.5 5.1 45 97-144 185-230 (232)
16 PRK11657 dsbG disulfide isomer 97.6 8.4E-05 1.8E-09 61.0 5.1 48 93-143 198-250 (251)
17 cd03020 DsbA_DsbC_DsbG DsbA fa 97.3 0.00022 4.8E-09 55.8 3.8 41 98-141 156-197 (197)
18 TIGR00411 redox_disulf_1 small 97.2 0.0007 1.5E-08 44.8 4.4 37 106-145 45-82 (82)
19 PF13098 Thioredoxin_2: Thiore 96.9 0.0017 3.6E-08 45.6 4.4 34 105-141 73-112 (112)
20 cd02972 DsbA_family DsbA famil 96.6 0.0024 5.2E-08 42.6 3.2 26 102-127 71-96 (98)
21 PF13192 Thioredoxin_3: Thiore 96.4 0.0042 9E-08 41.5 3.3 38 103-142 38-76 (76)
22 PRK11509 hydrogenase-1 operon 96.3 0.007 1.5E-07 45.4 4.5 47 103-149 80-128 (132)
23 cd03065 PDI_b_Calsequestrin_N 96.3 0.0078 1.7E-07 44.3 4.5 41 104-145 77-119 (120)
24 cd02963 TRX_DnaJ TRX domain, D 95.9 0.0096 2.1E-07 42.4 3.6 40 105-144 70-111 (111)
25 cd02951 SoxW SoxW family; SoxW 95.8 0.019 4.1E-07 41.3 4.9 47 104-150 74-124 (125)
26 PRK10996 thioredoxin 2; Provis 95.7 0.016 3.6E-07 43.0 4.2 41 105-145 97-139 (139)
27 PF00085 Thioredoxin: Thioredo 95.6 0.017 3.8E-07 39.2 3.6 40 104-143 61-102 (103)
28 TIGR00412 redox_disulf_2 small 95.5 0.018 3.8E-07 38.5 3.4 33 107-141 42-75 (76)
29 PRK09381 trxA thioredoxin; Pro 95.5 0.026 5.5E-07 39.5 4.2 40 106-145 67-108 (109)
30 cd02956 ybbN ybbN protein fami 95.4 0.024 5.1E-07 38.6 3.8 38 105-142 57-96 (96)
31 TIGR02196 GlrX_YruB Glutaredox 95.3 0.019 4.2E-07 36.4 2.9 31 107-141 43-73 (74)
32 cd02950 TxlA TRX-like protein 95.2 0.03 6.4E-07 41.9 4.0 44 105-148 67-113 (142)
33 cd02948 TRX_NDPK TRX domain, T 95.1 0.023 5E-07 39.7 3.0 38 106-144 63-102 (102)
34 PRK15412 thiol:disulfide inter 94.8 0.044 9.5E-07 42.5 4.2 43 106-148 134-179 (185)
35 PRK11200 grxA glutaredoxin 1; 94.8 0.084 1.8E-06 35.6 5.1 32 108-145 52-83 (85)
36 cd02947 TRX_family TRX family; 94.5 0.045 9.7E-07 35.6 3.2 37 105-141 54-92 (93)
37 TIGR01068 thioredoxin thioredo 94.5 0.071 1.5E-06 35.9 4.2 39 106-144 60-100 (101)
38 cd02949 TRX_NTR TRX domain, no 94.3 0.05 1.1E-06 37.4 3.1 37 105-141 58-96 (97)
39 TIGR00385 dsbE periplasmic pro 94.2 0.055 1.2E-06 41.4 3.5 42 105-146 128-172 (173)
40 cd03026 AhpF_NTD_C TRX-GRX-lik 94.0 0.047 1E-06 37.8 2.5 22 105-126 56-77 (89)
41 COG2143 Thioredoxin-related pr 94.0 0.079 1.7E-06 41.2 3.9 43 103-145 104-149 (182)
42 cd02973 TRX_GRX_like Thioredox 94.0 0.048 1E-06 34.8 2.4 20 106-125 44-63 (67)
43 KOG0910 Thioredoxin-like prote 93.9 0.088 1.9E-06 40.3 4.1 44 103-146 104-149 (150)
44 PTZ00443 Thioredoxin domain-co 93.8 0.15 3.2E-06 41.4 5.5 42 105-146 97-140 (224)
45 TIGR01126 pdi_dom protein disu 93.8 0.08 1.7E-06 35.8 3.3 41 104-144 59-101 (102)
46 TIGR01295 PedC_BrcD bacterioci 93.7 0.074 1.6E-06 38.9 3.2 37 106-142 82-121 (122)
47 cd02997 PDI_a_PDIR PDIa family 93.5 0.08 1.7E-06 36.1 3.0 35 106-140 67-103 (104)
48 PHA02278 thioredoxin-like prot 93.3 0.1 2.2E-06 37.1 3.3 34 106-139 64-99 (103)
49 cd02994 PDI_a_TMX PDIa family, 93.2 0.098 2.1E-06 35.9 3.0 36 106-142 63-100 (101)
50 cd02984 TRX_PICOT TRX domain, 93.2 0.089 1.9E-06 35.6 2.7 36 105-141 59-96 (97)
51 cd02975 PfPDO_like_N Pyrococcu 92.9 0.2 4.2E-06 35.9 4.3 39 105-146 66-111 (113)
52 cd02961 PDI_a_family Protein D 92.6 0.15 3.3E-06 33.8 3.2 37 104-140 61-100 (101)
53 cd03003 PDI_a_ERdj5_N PDIa fam 92.6 0.16 3.4E-06 35.0 3.4 35 105-139 63-99 (101)
54 cd02985 TRX_CDSP32 TRX family, 92.6 0.16 3.5E-06 35.5 3.4 36 105-141 62-99 (103)
55 cd03005 PDI_a_ERp46 PDIa famil 92.3 0.13 2.8E-06 35.0 2.6 36 105-140 64-101 (102)
56 cd03002 PDI_a_MPD1_like PDI fa 92.2 0.16 3.6E-06 35.0 3.2 37 105-141 65-108 (109)
57 cd02996 PDI_a_ERp44 PDIa famil 92.2 0.17 3.7E-06 35.3 3.2 36 105-140 69-107 (108)
58 cd02965 HyaE HyaE family; HyaE 92.1 0.17 3.8E-06 36.8 3.2 33 105-137 74-108 (111)
59 TIGR02187 GlrX_arch Glutaredox 91.8 0.32 6.9E-06 38.6 4.7 41 103-146 66-112 (215)
60 cd03000 PDI_a_TMX3 PDIa family 91.7 0.24 5.3E-06 34.3 3.5 39 105-144 63-103 (104)
61 cd02953 DsbDgamma DsbD gamma f 91.6 0.19 4.2E-06 34.7 2.9 37 105-141 63-103 (104)
62 cd02958 UAS UAS family; UAS is 91.4 0.36 7.7E-06 34.2 4.2 43 104-146 66-112 (114)
63 cd02998 PDI_a_ERp38 PDIa famil 91.2 0.22 4.7E-06 33.8 2.8 36 105-140 66-104 (105)
64 cd03004 PDI_a_ERdj5_C PDIa fam 91.1 0.19 4.1E-06 34.6 2.5 36 105-140 64-103 (104)
65 cd03001 PDI_a_P5 PDIa family, 90.9 0.37 7.9E-06 32.7 3.7 35 106-140 64-101 (103)
66 TIGR02180 GRX_euk Glutaredoxin 90.5 0.43 9.3E-06 31.3 3.7 30 107-142 47-76 (84)
67 cd03029 GRX_hybridPRX5 Glutare 90.5 0.34 7.3E-06 31.4 3.1 27 109-141 45-71 (72)
68 cd02999 PDI_a_ERp44_like PDIa 90.3 0.27 5.9E-06 34.3 2.7 35 105-140 63-99 (100)
69 PHA02125 thioredoxin-like prot 90.2 0.38 8.3E-06 31.7 3.2 20 105-125 37-56 (75)
70 TIGR02187 GlrX_arch Glutaredox 89.9 0.32 6.9E-06 38.5 3.1 36 105-143 177-214 (215)
71 TIGR02183 GRXA Glutaredoxin, G 89.7 0.95 2.1E-05 30.7 5.0 27 111-143 54-80 (86)
72 cd03007 PDI_a_ERp29_N PDIa fam 89.0 0.73 1.6E-05 33.7 4.2 40 104-143 68-114 (116)
73 KOG0908 Thioredoxin-like prote 88.9 0.69 1.5E-05 38.6 4.3 42 103-145 63-106 (288)
74 PF06764 DUF1223: Protein of u 88.5 0.87 1.9E-05 36.4 4.6 53 89-147 46-100 (202)
75 TIGR02181 GRX_bact Glutaredoxi 88.5 0.69 1.5E-05 30.4 3.5 29 108-142 43-71 (79)
76 COG3118 Thioredoxin domain-con 88.4 0.53 1.1E-05 39.9 3.4 41 107-147 90-132 (304)
77 cd02982 PDI_b'_family Protein 88.3 0.96 2.1E-05 30.7 4.3 40 105-144 57-102 (103)
78 PTZ00051 thioredoxin; Provisio 87.8 0.35 7.6E-06 32.7 1.8 23 104-126 61-85 (98)
79 PF00462 Glutaredoxin: Glutare 87.8 1.1 2.4E-05 27.9 3.9 15 111-125 46-60 (60)
80 KOG0907 Thioredoxin [Posttrans 87.4 0.61 1.3E-05 33.4 2.9 39 104-143 64-104 (106)
81 TIGR03143 AhpF_homolog putativ 87.2 0.76 1.6E-05 41.6 4.0 34 105-141 520-554 (555)
82 TIGR02190 GlrX-dom Glutaredoxi 87.0 0.89 1.9E-05 30.2 3.3 28 108-141 51-78 (79)
83 PRK03147 thiol-disulfide oxido 86.7 0.96 2.1E-05 33.8 3.7 40 105-144 129-171 (173)
84 TIGR01130 ER_PDI_fam protein d 86.3 0.9 2E-05 39.1 3.8 43 105-147 66-111 (462)
85 PTZ00102 disulphide isomerase; 86.1 1 2.3E-05 39.2 4.2 43 104-147 96-140 (477)
86 cd02976 NrdH NrdH-redoxin (Nrd 84.6 1.2 2.6E-05 27.8 3.0 27 110-140 46-72 (73)
87 cd03419 GRX_GRXh_1_2_like Glut 84.5 1.7 3.6E-05 28.3 3.7 29 108-142 47-75 (82)
88 cd02957 Phd_like Phosducin (Ph 84.5 0.87 1.9E-05 32.2 2.4 22 105-126 67-90 (113)
89 cd02989 Phd_like_TxnDC9 Phosdu 83.2 2.7 5.8E-05 30.0 4.5 21 105-125 66-88 (113)
90 cd03027 GRX_DEP Glutaredoxin ( 83.1 1.5 3.2E-05 28.4 2.9 26 110-141 47-72 (73)
91 COG0695 GrxC Glutaredoxin and 82.3 3 6.4E-05 28.1 4.3 26 111-139 50-75 (80)
92 cd02955 SSP411 TRX domain, SSP 82.3 3.2 6.9E-05 30.5 4.7 38 108-145 74-119 (124)
93 TIGR02740 TraF-like TraF-like 82.0 2.2 4.8E-05 35.4 4.2 42 105-146 220-265 (271)
94 TIGR02738 TrbB type-F conjugat 82.0 1.9 4.2E-05 32.8 3.6 35 111-145 115-153 (153)
95 cd03011 TlpA_like_ScsD_MtbDsbE 82.0 1.7 3.6E-05 30.5 3.1 33 106-139 85-120 (123)
96 cd02954 DIM1 Dim1 family; Dim1 81.7 0.91 2E-05 33.1 1.6 22 105-126 59-82 (114)
97 cd02995 PDI_a_PDI_a'_C PDIa fa 81.6 1.2 2.7E-05 30.0 2.2 34 107-140 66-103 (104)
98 PRK14018 trifunctional thiored 81.5 1.9 4.1E-05 39.2 3.9 40 105-144 130-172 (521)
99 PLN00410 U5 snRNP protein, DIM 81.2 3.2 6.9E-05 31.4 4.5 45 105-149 68-124 (142)
100 cd02066 GRX_family Glutaredoxi 81.1 2.3 5E-05 26.2 3.3 28 107-140 43-70 (72)
101 TIGR02189 GlrX-like_plant Glut 81.0 2.7 5.8E-05 29.4 3.8 29 107-141 54-82 (99)
102 PTZ00056 glutathione peroxidas 80.8 1.9 4.1E-05 34.0 3.3 41 117-157 148-194 (199)
103 cd03418 GRX_GRXb_1_3_like Glut 80.0 2.3 4.9E-05 27.3 3.0 25 110-140 46-71 (75)
104 cd03010 TlpA_like_DsbE TlpA-li 79.5 1.7 3.6E-05 30.9 2.4 21 106-126 92-115 (127)
105 PRK10329 glutaredoxin-like pro 79.1 6 0.00013 26.6 4.9 32 110-145 46-77 (81)
106 cd03028 GRX_PICOT_like Glutare 78.6 3 6.5E-05 28.4 3.4 27 109-141 58-84 (90)
107 cd02962 TMX2 TMX2 family; comp 78.5 2.1 4.6E-05 32.6 2.8 33 110-142 104-149 (152)
108 PRK00293 dipZ thiol:disulfide 78.2 3.3 7.1E-05 38.0 4.4 42 104-145 524-570 (571)
109 PF06953 ArsD: Arsenical resis 78.2 3.1 6.6E-05 30.8 3.5 42 106-148 64-105 (123)
110 TIGR02194 GlrX_NrdH Glutaredox 77.7 3.4 7.4E-05 26.7 3.3 28 109-140 43-71 (72)
111 cd02969 PRX_like1 Peroxiredoxi 77.6 5.7 0.00012 29.8 5.0 45 105-149 100-156 (171)
112 PHA03050 glutaredoxin; Provisi 77.4 3.7 8.1E-05 29.3 3.7 25 110-140 65-89 (108)
113 cd02983 P5_C P5 family, C-term 77.2 5.6 0.00012 29.3 4.7 49 106-157 71-125 (130)
114 TIGR00365 monothiol glutaredox 76.2 3.6 7.8E-05 28.6 3.3 27 110-142 63-89 (97)
115 PLN02919 haloacid dehalogenase 76.2 4.5 9.8E-05 39.8 5.0 42 105-146 493-537 (1057)
116 PRK10638 glutaredoxin 3; Provi 76.1 4.4 9.5E-05 26.9 3.6 28 107-140 45-72 (83)
117 cd02959 ERp19 Endoplasmic reti 75.7 1.4 3E-05 31.7 1.0 37 109-145 69-113 (117)
118 smart00594 UAS UAS domain. 73.1 7 0.00015 28.0 4.2 38 104-141 76-121 (122)
119 TIGR02661 MauD methylamine deh 71.8 8.4 0.00018 29.8 4.7 40 106-146 138-180 (189)
120 PLN02412 probable glutathione 70.9 6.5 0.00014 29.8 3.8 37 111-147 127-166 (167)
121 PF13905 Thioredoxin_8: Thiore 70.5 3.5 7.5E-05 27.6 2.0 19 105-123 73-94 (95)
122 cd02987 Phd_like_Phd Phosducin 70.4 9.1 0.0002 29.6 4.6 38 105-142 126-172 (175)
123 COG5494 Predicted thioredoxin/ 70.3 5.6 0.00012 32.5 3.4 35 107-143 52-86 (265)
124 cd03009 TryX_like_TryX_NRX Try 70.2 4.6 9.9E-05 28.8 2.7 21 105-125 90-113 (131)
125 PTZ00102 disulphide isomerase; 69.4 5.8 0.00013 34.5 3.7 41 107-147 424-467 (477)
126 cd02988 Phd_like_VIAF Phosduci 69.4 6.5 0.00014 30.9 3.6 36 107-142 145-189 (192)
127 TIGR01626 ytfJ_HI0045 conserve 69.1 7.1 0.00015 30.7 3.7 33 107-139 138-174 (184)
128 PF07449 HyaE: Hydrogenase-1 e 68.5 3.5 7.5E-05 29.8 1.7 34 103-139 71-106 (107)
129 cd02991 UAS_ETEA UAS family, E 67.8 13 0.00029 26.8 4.7 41 103-146 65-114 (116)
130 cd02992 PDI_a_QSOX PDIa family 67.8 3.6 7.9E-05 29.2 1.7 38 105-144 69-108 (114)
131 PTZ00256 glutathione peroxidas 67.1 8.1 0.00017 29.7 3.7 38 109-146 139-182 (183)
132 PRK13728 conjugal transfer pro 66.5 9.8 0.00021 29.9 4.0 42 107-148 127-174 (181)
133 PTZ00062 glutaredoxin; Provisi 65.7 9.6 0.00021 30.5 3.9 34 110-144 58-93 (204)
134 cd02964 TryX_like_family Trypa 65.0 5.3 0.00012 28.7 2.2 22 105-126 90-114 (132)
135 PRK13669 hypothetical protein; 64.7 11 0.00023 25.8 3.4 31 114-148 45-75 (78)
136 PF07293 DUF1450: Protein of u 64.5 11 0.00024 25.7 3.4 31 114-148 45-75 (78)
137 cd03006 PDI_a_EFP1_N PDIa fami 64.4 6.5 0.00014 28.2 2.5 34 106-139 75-111 (113)
138 KOG1752 Glutaredoxin and relat 64.4 16 0.00035 26.1 4.5 19 108-126 61-79 (104)
139 TIGR02200 GlrX_actino Glutared 62.9 9.3 0.0002 24.1 2.8 30 108-141 45-75 (77)
140 cd02966 TlpA_like_family TlpA- 61.6 7.1 0.00015 25.8 2.2 22 105-126 88-112 (116)
141 TIGR03140 AhpF alkyl hydropero 60.1 12 0.00026 33.5 3.9 38 105-144 161-198 (515)
142 PRK15317 alkyl hydroperoxide r 60.1 12 0.00026 33.5 3.9 38 104-143 159-196 (517)
143 KOG0190 Protein disulfide isom 59.0 10 0.00022 34.4 3.3 45 104-148 89-135 (493)
144 cd02967 mauD Methylamine utili 56.7 11 0.00023 25.9 2.4 20 106-125 87-109 (114)
145 cd03012 TlpA_like_DipZ_like Tl 56.2 9.1 0.0002 27.2 2.1 20 107-126 98-120 (126)
146 TIGR02739 TraF type-F conjugat 55.4 25 0.00053 29.2 4.7 46 103-148 202-251 (256)
147 PF13728 TraF: F plasmid trans 54.5 15 0.00032 29.4 3.2 37 103-139 172-212 (215)
148 TIGR02540 gpx7 putative glutat 53.9 18 0.00039 26.6 3.4 33 113-145 114-153 (153)
149 PLN02399 phospholipid hydroper 53.8 17 0.00037 29.6 3.5 35 112-146 198-235 (236)
150 PRK13703 conjugal pilus assemb 53.3 19 0.00042 29.7 3.8 46 103-148 195-244 (248)
151 PF08534 Redoxin: Redoxin; In 52.5 13 0.00028 26.8 2.4 22 105-126 96-129 (146)
152 cd02993 PDI_a_APS_reductase PD 51.3 14 0.00031 25.6 2.4 12 109-120 73-84 (109)
153 PF01119 DNA_mis_repair: DNA m 50.3 29 0.00063 24.7 3.9 35 115-156 41-75 (119)
154 PRK10824 glutaredoxin-4; Provi 49.5 22 0.00048 25.8 3.2 18 110-127 66-83 (115)
155 PRK15320 transcriptional activ 48.9 22 0.00047 29.0 3.3 70 50-126 154-223 (251)
156 cd03008 TryX_like_RdCVF Trypar 48.8 18 0.00039 27.3 2.7 22 105-126 103-127 (146)
157 TIGR00683 nanA N-acetylneurami 48.7 55 0.0012 27.1 5.9 52 98-156 21-73 (290)
158 cd03081 TRX_Fd_NuoE_FDH_gamma 48.0 22 0.00047 23.7 2.8 25 115-143 55-79 (80)
159 PRK12759 bifunctional gluaredo 47.5 14 0.00031 32.4 2.2 20 108-127 54-73 (410)
160 COG3634 AhpF Alkyl hydroperoxi 47.2 14 0.00031 32.7 2.1 35 107-143 162-196 (520)
161 cd03017 PRX_BCP Peroxiredoxin 43.4 20 0.00044 25.4 2.2 37 105-141 91-139 (140)
162 TIGR03738 PRTRC_C PRTRC system 42.5 42 0.00091 22.2 3.3 27 117-143 8-34 (66)
163 cd00408 DHDPS-like Dihydrodipi 42.4 72 0.0016 25.9 5.6 45 99-148 19-63 (281)
164 cd03082 TRX_Fd_NuoE_W_FDH_beta 42.3 37 0.00081 22.3 3.2 24 115-142 47-70 (72)
165 cd03072 PDI_b'_ERp44 PDIb' fam 41.5 39 0.00085 23.9 3.4 43 106-148 63-111 (111)
166 cd03031 GRX_GRX_like Glutaredo 41.2 40 0.00087 25.5 3.6 23 112-140 58-80 (147)
167 PTZ00062 glutaredoxin; Provisi 40.3 34 0.00074 27.3 3.2 26 110-141 164-189 (204)
168 KOG0191 Thioredoxin/protein di 39.2 50 0.0011 28.3 4.3 44 104-147 91-136 (383)
169 PF07511 DUF1525: Protein of u 38.9 58 0.0013 23.8 4.0 23 104-126 73-95 (114)
170 TIGR03757 conj_TIGR03757 integ 38.5 1.2E+02 0.0026 22.1 5.6 23 104-126 74-96 (113)
171 COG1905 NuoE NADH:ubiquinone o 38.0 37 0.00081 26.3 3.0 30 114-147 130-159 (160)
172 PF14454 Prok_Ub: Prokaryotic 37.6 59 0.0013 21.4 3.5 27 117-143 9-35 (65)
173 KOG1200 Mitochondrial/plastidi 37.0 53 0.0012 26.9 3.8 57 85-147 65-124 (256)
174 cd01659 TRX_superfamily Thiore 36.6 22 0.00047 20.0 1.2 16 107-122 46-61 (69)
175 COG2323 Predicted membrane pro 35.5 31 0.00066 28.1 2.3 32 112-143 90-124 (224)
176 COG5429 Uncharacterized secret 35.2 42 0.00092 27.8 3.0 50 89-144 89-140 (261)
177 cd00954 NAL N-Acetylneuraminic 34.9 1.2E+02 0.0026 24.9 5.8 45 99-148 22-67 (288)
178 PF11551 Omp28: Outer membrane 34.8 13 0.00028 29.1 0.0 41 104-145 9-51 (184)
179 TIGR00424 APS_reduc 5'-adenyly 34.4 57 0.0012 29.4 4.0 35 108-144 422-462 (463)
180 KOG1731 FAD-dependent sulfhydr 34.3 50 0.0011 30.7 3.6 41 102-145 104-153 (606)
181 cd03482 MutL_Trans_MutL MutL_T 32.1 70 0.0015 23.0 3.5 35 116-157 46-80 (123)
182 cd03015 PRX_Typ2cys Peroxiredo 32.0 1.1E+02 0.0024 22.9 4.8 42 107-148 106-160 (173)
183 cd03483 MutL_Trans_MLH1 MutL_T 32.0 69 0.0015 23.2 3.5 33 117-156 51-83 (127)
184 PLN02309 5'-adenylylsulfate re 31.8 67 0.0015 28.9 4.0 39 106-144 413-456 (457)
185 cd02986 DLP Dim1 family, Dim1- 31.8 42 0.00091 24.5 2.3 40 105-144 59-110 (114)
186 TIGR01130 ER_PDI_fam protein d 31.4 99 0.0022 26.4 4.9 46 105-150 281-332 (462)
187 cd00951 KDGDH 5-dehydro-4-deox 30.9 1.6E+02 0.0034 24.3 5.9 45 99-148 22-66 (289)
188 PRK06246 fumarate hydratase; P 30.7 2.4E+02 0.0052 23.8 6.9 25 96-120 47-76 (280)
189 cd03030 GRX_SH3BGR Glutaredoxi 30.0 1.2E+02 0.0027 20.8 4.4 26 110-141 56-81 (92)
190 TIGR03249 KdgD 5-dehydro-4-deo 30.0 1.7E+02 0.0036 24.2 5.9 51 99-156 27-77 (296)
191 PF01257 2Fe-2S_thioredx: Thio 29.2 66 0.0014 23.9 3.1 26 115-144 119-144 (145)
192 cd03064 TRX_Fd_NuoE TRX-like [ 28.1 71 0.0015 20.9 2.8 26 114-143 54-79 (80)
193 smart00305 HintC Hint (Hedgeho 28.0 50 0.0011 19.5 1.8 19 109-127 22-40 (46)
194 cd02952 TRP14_like Human TRX-r 27.8 52 0.0011 23.9 2.2 23 105-127 80-105 (119)
195 PF04239 DUF421: Protein of un 27.8 40 0.00086 23.6 1.6 32 112-143 4-38 (99)
196 smart00595 MADF subfamily of S 27.4 1.7E+02 0.0037 19.2 4.6 47 46-93 3-50 (89)
197 PRK03620 5-dehydro-4-deoxygluc 26.8 2E+02 0.0043 24.0 5.8 45 99-148 29-73 (303)
198 cd00952 CHBPH_aldolase Trans-o 26.1 2E+02 0.0043 24.0 5.8 51 99-156 30-80 (309)
199 PF14237 DUF4339: Domain of un 25.8 89 0.0019 18.3 2.7 20 121-144 7-26 (45)
200 PF12812 PDZ_1: PDZ-like domai 25.4 60 0.0013 21.8 2.0 24 115-144 49-75 (78)
201 cd00782 MutL_Trans MutL_Trans: 25.3 1.2E+02 0.0026 21.2 3.8 33 117-156 47-79 (122)
202 PF05488 PAAR_motif: PAAR moti 25.3 21 0.00046 23.4 -0.2 14 112-125 47-60 (76)
203 cd00340 GSH_Peroxidase Glutath 25.2 48 0.001 24.3 1.7 24 117-140 126-151 (152)
204 PF05681 Fumerase: Fumarate hy 25.0 2.9E+02 0.0063 23.1 6.4 25 96-120 39-68 (271)
205 PF11521 TFIIE-A_C-term: C-ter 25.0 1.1E+02 0.0024 21.1 3.4 19 113-138 38-56 (86)
206 COG4001 Predicted metal-bindin 24.9 1.3E+02 0.0027 21.3 3.6 36 64-100 57-92 (102)
207 KOG4277 Uncharacterized conser 24.6 91 0.002 27.1 3.4 36 106-142 92-129 (468)
208 PRK03170 dihydrodipicolinate s 24.2 2.4E+02 0.0051 23.1 5.8 45 99-148 23-67 (292)
209 PF14452 Multi_ubiq: Multiubiq 23.9 1.2E+02 0.0026 19.6 3.3 24 117-140 4-27 (72)
210 PRK08508 biotin synthase; Prov 23.6 2.1E+02 0.0046 23.5 5.4 54 95-159 135-188 (279)
211 PF13085 Fer2_3: 2Fe-2S iron-s 23.6 47 0.001 24.0 1.3 23 103-125 47-69 (110)
212 PF07908 D-aminoacyl_C: D-amin 23.5 69 0.0015 19.4 1.9 15 113-127 18-32 (48)
213 PRK09437 bcp thioredoxin-depen 23.4 1.3E+02 0.0029 21.7 3.8 27 117-143 123-151 (154)
214 COG3019 Predicted metal-bindin 22.9 1E+02 0.0022 23.6 3.0 35 106-143 68-102 (149)
215 PRK13190 putative peroxiredoxi 22.7 1.4E+02 0.003 23.3 4.0 33 114-146 116-155 (202)
216 cd00950 DHDPS Dihydrodipicolin 22.7 2.5E+02 0.0054 22.8 5.6 45 99-148 22-66 (284)
217 PF01216 Calsequestrin: Calseq 22.2 97 0.0021 27.2 3.1 43 103-146 101-145 (383)
218 PRK05988 formate dehydrogenase 21.7 1.5E+02 0.0033 22.5 3.9 27 115-145 129-155 (156)
219 cd03083 TRX_Fd_NuoE_hoxF TRX-l 21.7 1.3E+02 0.0029 19.8 3.2 25 115-143 55-79 (80)
220 COG4104 Uncharacterized conser 21.5 68 0.0015 22.9 1.7 14 112-125 61-74 (98)
221 PF10555 MraY_sig1: Phospho-N- 21.5 36 0.00077 15.5 0.2 6 113-118 2-7 (13)
222 PLN02417 dihydrodipicolinate s 21.2 2.8E+02 0.006 22.8 5.6 44 100-148 24-67 (280)
223 COG2521 Predicted archaeal met 20.6 96 0.0021 26.0 2.7 29 113-144 99-127 (287)
224 PRK07571 bidirectional hydroge 20.3 1.6E+02 0.0036 22.7 3.8 26 115-144 142-167 (169)
225 cd03413 CbiK_C Anaerobic cobal 20.2 1.1E+02 0.0024 21.5 2.6 76 65-144 15-91 (103)
No 1
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.40 E-value=7.3e-12 Score=101.13 Aligned_cols=117 Identities=15% Similarity=0.253 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhhhh-HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHH
Q 031378 30 CFFLVVLYIKRRLNC-LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKF 106 (160)
Q Consensus 30 ~~a~ra~~aar~~~~-~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~ 106 (160)
..|||+.+.|+..|+ ...++ -|++|+.. +.|.+..+++-.|+..+ ||| .+.|++.+.+.+....++.+.+.
T Consensus 103 ~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~e-g~nI~D~dVL~diA~~~----GLD-~~~~~~~L~s~~~~~avr~d~~~ 176 (225)
T COG2761 103 LDAHRLIKAAELQGKAQDRFLEALFEAYFEE-GRNIGDEDVLADIAEEV----GLD-REEFKADLASDAAKDAVRQDEAA 176 (225)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHhcc-CCCCCcHHHHHHHHHHh----CCC-HHHHHHHHhChHHHHHHHHHHHH
Confidence 399999999999997 44555 68888776 67888887766666554 999 69999999999999999999999
Q ss_pred hhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCcc
Q 031378 107 SATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVP 155 (160)
Q Consensus 107 a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~ 155 (160)
+++.||+|.|||++ +|..++|+.+ ++.+...|+.+++.+.+.+..|
T Consensus 177 A~e~gI~gVP~fv~d~~~~V~Gaq~---~~v~~~al~~~~~~~~~~~~~~ 223 (225)
T COG2761 177 AQEMGIRGVPTFVFDGKYAVSGAQP---YDVLEDALRQLLAEKAEEHKPP 223 (225)
T ss_pred HHHCCCccCceEEEcCcEeecCCCC---HHHHHHHHHHHHhcccccCCCC
Confidence 99999999999999 7888999888 9999999999998885544443
No 2
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.37 E-value=4.4e-12 Score=98.74 Aligned_cols=104 Identities=12% Similarity=0.159 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHhhhhHHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHh
Q 031378 30 CFFLVVLYIKRRLNCLLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFS 107 (160)
Q Consensus 30 ~~a~ra~~aar~~~~~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a 107 (160)
.+|||++.+++..+...+.. -+..+|.. +.+.+..+.+..++ .+ +|+| .++|.+++++.+....++.+.+.+
T Consensus 95 ~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~-~~~i~~~~~l~~~a---~~-~Gld-~~~~~~~~~~~~~~~~~~~~~~~a 168 (201)
T cd03024 95 FDAHRLIHLAKEQGKQDALVEALFRAYFTE-GKDIGDRDVLVDLA---EE-AGLD-AAEARAVLASDEYADEVRADEARA 168 (201)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcc-CCCCCCHHHHHHHH---HH-cCCC-HHHHHHHhcCcccchHHHHHHHHH
Confidence 48999999998765422222 33444443 44556555554444 44 4999 599999999999999999999999
Q ss_pred hcCCccccceEEECCE-EecCCCCCCCHHHHHHHHH
Q 031378 108 ATRGVYATPTFFVNGF-SLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 108 ~~~GV~GTPTffING~-~~~ga~s~~~~e~~~~~Id 142 (160)
++.||.|||||+|||+ .+.|+.+ ++.|.++|+
T Consensus 169 ~~~gv~G~Pt~vv~g~~~~~G~~~---~~~~~~~i~ 201 (201)
T cd03024 169 RQLGISGVPFFVFNGKYAVSGAQP---PEVFLQALR 201 (201)
T ss_pred HHCCCCcCCEEEECCeEeecCCCC---HHHHHHHhC
Confidence 9999999999999977 5677666 999998874
No 3
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=99.30 E-value=3.7e-11 Score=92.63 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHhhh-h---HHHHhchhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHH
Q 031378 29 VCFFLVVLYIKRRLN-C---LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSF 104 (160)
Q Consensus 29 ~~~a~ra~~aar~~~-~---~l~~~~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~ 104 (160)
..+|+++..+++..+ . +.+.+ ...++.. +.+.+..+++. +.+.+ +|+| .++|++++++.+....++.+.
T Consensus 85 s~~a~~~~~~a~~~~~~~~~~~~~l-f~a~~~~-~~~i~~~~~l~---~~a~~-~Gld-~~~~~~~~~~~~~~~~l~~~~ 157 (192)
T cd03022 85 TLRAMRAALAAQAEGDAAEAFARAV-FRALWGE-GLDIADPAVLA---AVAAA-AGLD-ADELLAAADDPAVKAALRANT 157 (192)
T ss_pred hHHHHHHHHHHHhCchhHHHHHHHH-HHHHhCC-CCCCCCHHHHH---HHHHH-cCCC-HHHHHHHcCCHHHHHHHHHHH
Confidence 358999999998877 4 33332 3334443 34455544444 44444 4999 599999999999999999999
Q ss_pred HHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 105 k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I 141 (160)
+.++++||+|||||+|||+.+.|..+ ++.+.+.|
T Consensus 158 ~~a~~~gi~gvPtfvv~g~~~~G~~~---l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVVDGEMFWGQDR---LDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEECCeeeccccc---HHHHHHHh
Confidence 99999999999999999999988666 88776654
No 4
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.3e-11 Score=96.13 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=94.8
Q ss_pred eeccCchh---hhHHHHHHHHHhhhh-H-HHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccC-C
Q 031378 22 SYFRDKFV---CFFLVVLYIKRRLNC-L-LEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFS-D 93 (160)
Q Consensus 22 ~~~~~~~~---~~a~ra~~aar~~~~-~-l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~-~ 93 (160)
+....+|+ +|+|+|+++|+.+++ - +++| +|.++|.. +++.++.+++..|+.. +||+ .+.|.+.++ +
T Consensus 79 lL~~~~~v~DSepa~~ai~aA~~l~~r~~l~ml~aIQrA~YvE-Grdi~~t~vl~~laa~----~GL~-~~~f~~~f~~s 152 (212)
T COG3531 79 LLRDTGFVYDSEPACRAILAARLLDGRGRLTMLHAIQRAHYVE-GRDITQTEVLAELAAA----IGLA-AEEFDNAFDQS 152 (212)
T ss_pred hhcccCccccccHHHHHHHHHHHhCcccchHHHHHHHHHHHhc-cccchhhHHHHHHHHH----cCCC-HHHHHHhcchh
Confidence 34455666 699999999999998 3 7888 99999998 7888898887776655 4999 599999998 6
Q ss_pred hhHHHHHHHH-HHHhhcCCccccceEEE--CCEEecCCCC--CCCHHHHHHHHHHHhh
Q 031378 94 RSTDLLTRVS-FKFSATRGVYATPTFFV--NGFSLAGAGS--PLDYNGWRKVIDPLLS 146 (160)
Q Consensus 94 ~~~~~~i~~~-~k~a~~~GV~GTPTffI--NG~~~~ga~s--~~~~e~~~~~Id~~l~ 146 (160)
.+..+....+ ++..+++|++|+|||.+ ||++..-..+ --+.++|...+.+.+.
T Consensus 153 ~~~~~~~~a~~r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 153 GAARQAHIADSRRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 6655555555 88999999999999999 9998764333 3346899998887764
No 5
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=99.28 E-value=2.8e-11 Score=89.35 Aligned_cols=96 Identities=14% Similarity=0.245 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhhhh-----HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHH
Q 031378 30 CFFLVVLYIKRRLNC-----LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRV 102 (160)
Q Consensus 30 ~~a~ra~~aar~~~~-----~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~ 102 (160)
.++++++.++.+.++ +.+.+ .|. ..+.. .+.+.+.+ +|++ .++|.+++++......++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~--------~~~~~----~l~~~a~~-~gl~-~~~~~~~~~~~~~~~~~~~ 117 (154)
T cd03023 52 VLAARVALAVWKNGPGKYLEFHNALMATRG--------RLNEE----SLLRIAKK-AGLD-EAKLKKDMDDPEIEATIDK 117 (154)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHhcCC--------CCCHH----HHHHHHHH-cCCC-HHHHHHHhhChHHHHHHHH
Confidence 478888877766444 22222 222 11222 34455555 5999 5999999999999999999
Q ss_pred HHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378 103 SFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id 142 (160)
+.+.++++||+|||||+|||+.+.|..+ +++|.++|+
T Consensus 118 ~~~~~~~~gi~gtPt~~v~g~~~~G~~~---~~~l~~~i~ 154 (154)
T cd03023 118 NRQLARALGITGTPAFIIGDTVIPGAVP---ADTLKEAID 154 (154)
T ss_pred HHHHHHHcCCCcCCeEEECCEEecCCCC---HHHHHHHhC
Confidence 9999999999999999999999998555 999998875
No 6
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=99.26 E-value=5.9e-11 Score=91.44 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhhhhHHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHh
Q 031378 30 CFFLVVLYIKRRLNCLLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFS 107 (160)
Q Consensus 30 ~~a~ra~~aar~~~~~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a 107 (160)
.+|++++.+++..+...... .++.++.. +.+.+..+++..++ .+ +|+| .+++++.+++++....++.+.+.+
T Consensus 87 ~~a~~~~~~a~~~~~~~~~~~al~~a~~~~-~~~i~~~~vl~~~~---~~-~Gld-~~~~~~~~~~~~~~~~~~~~~~~a 160 (193)
T PF01323_consen 87 RPAHRAAYAAQEQGKADAFADALFRAYFVE-GRDISDPDVLAEIA---EE-AGLD-PDEFDAALDSPEVKAALEEDTAEA 160 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-ST-TSSHHHHHHHH---HH-TT---HHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhc-ccCCCCHHHHHHHH---HH-cCCc-HHHHHHHhcchHHHHHHHHHHHHH
Confidence 58999999999998411222 45666665 56667666554444 44 4999 599999999999999999999999
Q ss_pred hcCCccccceEEECCE-EecCCCCCCCHHHHHHHHH
Q 031378 108 ATRGVYATPTFFVNGF-SLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 108 ~~~GV~GTPTffING~-~~~ga~s~~~~e~~~~~Id 142 (160)
.++||.|+|||+|||+ .+.|..+ ++.+.+.|.
T Consensus 161 ~~~gv~GvP~~vv~g~~~~~G~~~---~~~l~~~l~ 193 (193)
T PF01323_consen 161 RQLGVFGVPTFVVNGKYRFFGADR---LDELEDALQ 193 (193)
T ss_dssp HHTTCSSSSEEEETTTEEEESCSS---HHHHHHHH-
T ss_pred HHcCCcccCEEEECCEEEEECCCC---HHHHHHHhC
Confidence 9999999999999999 8889777 998888763
No 7
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=99.22 E-value=1.5e-10 Score=91.95 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=62.6
Q ss_pred HHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCC------CCCHHHHHHHHHHH
Q 031378 71 IVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGS------PLDYNGWRKVIDPL 144 (160)
Q Consensus 71 la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s------~~~~e~~~~~Id~~ 144 (160)
+.+.+.+ .|+| .++|++++++......++.+.+.++++||+|||||+|||+.+.+..+ .-+.+++.+.|+-+
T Consensus 126 L~~~a~~-~Gld-~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~~L 203 (207)
T PRK10954 126 IRDVFIK-AGVK-GEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVKFL 203 (207)
T ss_pred HHHHHHH-cCCC-HHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEccccccccchhhhHHHHHHHHHHH
Confidence 4455555 5999 59999999999999999999999999999999999999998765443 22578888988877
Q ss_pred hhhc
Q 031378 145 LSEK 148 (160)
Q Consensus 145 l~~~ 148 (160)
+.++
T Consensus 204 ~~k~ 207 (207)
T PRK10954 204 LEKK 207 (207)
T ss_pred HcCC
Confidence 7654
No 8
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=99.17 E-value=3.8e-10 Score=85.85 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHhhhh---HHH-Hh-chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHH
Q 031378 29 VCFFLVVLYIKRRLNC---LLE-IV-QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVS 103 (160)
Q Consensus 29 ~~~a~ra~~aar~~~~---~l~-~~-~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~ 103 (160)
..+++++..++...+. +.+ +| .+.. . ..+.+.. +.+.+.+.+ +|++ .++|.+++++.++...++.+
T Consensus 62 ~~~aa~a~~aa~~~~~~~~~~~~lf~~~~~--~--~~~~~~~---~~l~~~a~~-~Gl~-~~~~~~~~~s~~~~~~i~~~ 132 (178)
T cd03019 62 GEPLARAFYAAEALGLEDKLHAALFEAIHE--K--RKRLLDP---DDIRKIFLS-QGVD-KKKFDAAYNSFSVKALVAKA 132 (178)
T ss_pred chHHHHHHHHHHHcCcHhhhhHHHHHHHHH--h--CCCCCCH---HHHHHHHHH-hCCC-HHHHHHHHhCHHHHHHHHHH
Confidence 3588888888877655 333 34 3222 1 1122222 234555555 4999 59999999999999999999
Q ss_pred HHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378 104 FKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE 147 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~ 147 (160)
.+.+.++||+|||||+|||+.+.+..+.-+.+ +-+.|+.++.+
T Consensus 133 ~~~~~~~gi~gTPt~iInG~~~~~~~~~~~~~-~~~~~~~~~~~ 175 (178)
T cd03019 133 EKLAKKYKITGVPAFVVNGKYVVNPSAIGGDD-TLQVLDELIEK 175 (178)
T ss_pred HHHHHHcCCCCCCeEEECCEEEEChhhccchh-HHHHHHHHHHH
Confidence 99999999999999999999987765433333 66666666554
No 9
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=99.17 E-value=1.2e-10 Score=90.81 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHhhhh--HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHH
Q 031378 30 CFFLVVLYIKRRLNC--LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFK 105 (160)
Q Consensus 30 ~~a~ra~~aar~~~~--~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k 105 (160)
++||+|..||+..++ -...+ -|++++.. ..+.+..+++..++ .+ +||| .++|.+++++..+...+..|.+
T Consensus 65 y~a~la~kAA~~qg~k~~~~fL~~lQ~a~~~~-~~~~s~~~~l~~iA---~~-~gLD-~~~F~~d~~S~~~~~~~~~D~~ 138 (176)
T PF13743_consen 65 YPACLAYKAAQLQGKKKARRFLRALQEALFLE-GKNYSDEELLLEIA---EE-LGLD-VEMFKEDLHSDEAKQAFQEDQQ 138 (176)
T ss_dssp HHHHHHHHHHHTTT-H--HHHHHHHHHHHHTS----TTSHHHHHHHH---HH-TT---HHHHHHHHTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhChhhHHHHHHHHHHHHHhc-CCCCCHHHHHHHHH---HH-hCCC-HHHHHHHHhChHHHHHHHHHHH
Confidence 699999999999988 23444 68887766 45666655544444 44 5999 7999999999999999999999
Q ss_pred HhhcCCccccceEEE-C------CEEecCCCC
Q 031378 106 FSATRGVYATPTFFV-N------GFSLAGAGS 130 (160)
Q Consensus 106 ~a~~~GV~GTPTffI-N------G~~~~ga~s 130 (160)
.|+++||+++||++| | |.+++|..+
T Consensus 139 la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~ 170 (176)
T PF13743_consen 139 LAREMGITGFPTLVIFNENNEEYGILIEGYYS 170 (176)
T ss_dssp HHHHTT-SSSSEEEEE----------------
T ss_pred HHHHcCCCCCCEEEEEeccccccccccccccc
Confidence 999999999999999 4 777777544
No 10
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=99.11 E-value=3.8e-10 Score=84.46 Aligned_cols=60 Identities=23% Similarity=0.457 Sum_probs=53.6
Q ss_pred CCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 80 GNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 80 Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
|.+ .++|.+++++..+...+..+.+.+++.||+|||||+|||+.+.+ .+++++|.++||+
T Consensus 103 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~inG~~~~~---~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 103 GGS-NEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFINGKYVVG---PYTIEELKELIDK 162 (162)
T ss_dssp TSH-HHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEETTCEEET---TTSHHHHHHHHHH
T ss_pred CCC-HHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEECCEEeCC---CCCHHHHHHHHcC
Confidence 555 48899999999999999999999999999999999999999987 6669999999985
No 11
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.05 E-value=9.8e-10 Score=84.86 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHhhhh--HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHH
Q 031378 29 VCFFLVVLYIKRRLNC--LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSF 104 (160)
Q Consensus 29 ~~~a~ra~~aar~~~~--~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~ 104 (160)
+.+|++++.+++..++ ..+++ .|.++|.. +.+.+..+++..++ .+ +|+| .++|.++++++++...++.+.
T Consensus 86 s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~-~~~i~~~~~l~~ia---~~-~Gld-~~~~~~~~~s~~~~~~l~~~~ 159 (193)
T cd03025 86 SAPASRAIKAARLQGPERLLEMLKAIQRAHYVE-GRDLADTEVLRELA---IE-LGLD-VEEFLEDFQSDEAKQAIQEDQ 159 (193)
T ss_pred chHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc-CCCCCCHHHHHHHH---HH-cCCC-HHHHHHHHcChHHHHHHHHHH
Confidence 3589999999998886 33444 67777765 55666655554444 33 4999 599999999999999999999
Q ss_pred HHhhcCCccccceEEEC
Q 031378 105 KFSATRGVYATPTFFVN 121 (160)
Q Consensus 105 k~a~~~GV~GTPTffIN 121 (160)
+.+.++||.|||||+|+
T Consensus 160 ~~a~~~gv~g~Ptfvv~ 176 (193)
T cd03025 160 KLARELGINGFPTLVLE 176 (193)
T ss_pred HHHHHcCCCccCEEEEE
Confidence 99999999999999994
No 12
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.3e-08 Score=82.03 Aligned_cols=58 Identities=28% Similarity=0.478 Sum_probs=49.3
Q ss_pred HHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 85 SALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 85 ~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
+.+..+++....+..+..+.+.|++.||+|||||+|||..+.|..+ .+++.++|+..+
T Consensus 186 ~~~~~~~~~~~~~~~i~~~~~~a~~~gv~gTPt~~v~~~~~~g~~~---~~~l~~~i~~~~ 243 (244)
T COG1651 186 EGKKAKLNQKACDALIAKNYKLAQQLGVNGTPTFIVNGKLVPGLPD---LDELKAIIDEAL 243 (244)
T ss_pred hhhhhccChHHHHHHHHHHHHHHHhcCCCcCCeEEECCeeecCCCC---HHHHHHHHHHhh
Confidence 4555677655678889999999999999999999999998888655 999999999875
No 13
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.31 E-value=9.2e-06 Score=63.84 Aligned_cols=103 Identities=19% Similarity=0.161 Sum_probs=73.7
Q ss_pred hhHHHHHHHH-Hhhhh---HHHHhchhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHH
Q 031378 30 CFFLVVLYIK-RRLNC---LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFK 105 (160)
Q Consensus 30 ~~a~ra~~aa-r~~~~---~l~~~~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k 105 (160)
..+.|+..++ +..++ +.+..-..-|.+ +.+.+..++.-++++.+ |+|. .++.+...++++.+.+..+..
T Consensus 95 ~~~~R~~~~~~~~g~~a~~~~~a~lrAlw~d--~~~l~epev~~~vA~~a----GlDg-~al~A~~gd~eik~~l~a~~~ 167 (203)
T COG3917 95 LGAARAMIALAMGGGLAEQFAEAVLRALWAD--GQNLGEPEVVYAVANAA----GLDG-AALLALLGDDEIKARLKANTA 167 (203)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhc--ccccCChHHHHHHHHHc----CCCH-HHHHhhcCCHHHHHHHHhhHH
Confidence 4788888885 33333 333223444544 33556666665555554 9995 999999999999999999999
Q ss_pred HhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 106 FSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 106 ~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
.+.+.||-|+||||++++.+=| .+.+..+-++++
T Consensus 168 ~a~srGvfGaPtfivg~q~fwG------qDRL~~lea~L~ 201 (203)
T COG3917 168 EAVSRGVFGAPTFIVGDQLFWG------QDRLYQLEAELR 201 (203)
T ss_pred HHHhcCccCCCeEEECCeeeec------hhHHHHHHHHHh
Confidence 9999999999999999998654 566555444443
No 14
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=98.23 E-value=8.6e-06 Score=64.49 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHhhhh-----HHHHhchhhhhcCCCCCCChHHHHH-HHHHHHHhhcCCChhHHHHccc---CChhHHHHH
Q 031378 30 CFFLVVLYIKRRLNC-----LLEIVQQEKFYNAPTQNMTRTAVVK-EIVKFAAEGIGNSYSSALESGF---SDRSTDLLT 100 (160)
Q Consensus 30 ~~a~ra~~aar~~~~-----~l~~~~Q~~f~~~~~~~~t~~~i~~-~la~~A~~~~Gld~~~~f~~~l---~~~~~~~~i 100 (160)
..|||.+.+++..+. +++.+ ...|+.. ..+.+....+. .|.+.|.+ +|+| .+..+..+ .+++..+.+
T Consensus 90 ~~a~rl~~~a~~~~~~~~~~~~~~l-~~a~f~~-g~~i~~~~~l~~vL~~~a~~-~Gld-~~~~~~~l~~~~~~~~~~~l 165 (209)
T cd03021 90 LTAQRFLTAISEQHPESTLTALEAL-FREFWVR-PWSLTEPITESQSISVAADK-LGGS-AEQAEKLLKAASTPEVKNRL 165 (209)
T ss_pred HHHHHHHHHHHhhCcchHHHHHHHH-HHHHHHH-hccCCCchhhHHHHHHHHHH-cCCC-cccHHHHHHHccCHHHHHHH
Confidence 389999999987643 22222 2333322 22233223332 34444444 5998 34444444 688889999
Q ss_pred HHHHHHhhcCCccccceEEEC
Q 031378 101 RVSFKFSATRGVYATPTFFVN 121 (160)
Q Consensus 101 ~~~~k~a~~~GV~GTPTffIN 121 (160)
+.+.+.|.+.||.|.|||+||
T Consensus 166 ~~~~~~A~~~Gv~GVP~fvv~ 186 (209)
T cd03021 166 KENTDEALKYGAFGLPWIVVT 186 (209)
T ss_pred HHHHHHHHHcCCCCCCEEEEE
Confidence 999999999999999999996
No 15
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.98 E-value=1.1e-05 Score=65.54 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 97 DLLTRVSFKFSATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 97 ~~~i~~~~k~a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
+..++.+.++++++||+||||+++ ||+.++|+.+ .++|.++|++.
T Consensus 185 ~~~v~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~---~~~L~~~l~~~ 230 (232)
T PRK10877 185 DVDIADHYALGVQFGVQGTPAIVLSNGTLVPGYQG---PKEMKAFLDEH 230 (232)
T ss_pred cchHHHhHHHHHHcCCccccEEEEcCCeEeeCCCC---HHHHHHHHHHc
Confidence 345777899999999999999999 9999998766 99999988853
No 16
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.63 E-value=8.4e-05 Score=61.01 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHHhhcCCccccceEEE-C--CE--EecCCCCCCCHHHHHHHHHH
Q 031378 93 DRSTDLLTRVSFKFSATRGVYATPTFFV-N--GF--SLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 93 ~~~~~~~i~~~~k~a~~~GV~GTPTffI-N--G~--~~~ga~s~~~~e~~~~~Id~ 143 (160)
+++....+..+.++++++||+||||+++ | |. .++|+.+ .+++.+++++
T Consensus 198 ~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~---~~~L~~~l~~ 250 (251)
T PRK11657 198 PAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPD---PAQLAEIMGP 250 (251)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCC---HHHHHHHhCC
Confidence 4456778999999999999999999999 5 65 6788766 8998888754
No 17
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.33 E-value=0.00022 Score=55.83 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHH
Q 031378 98 LLTRVSFKFSATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 98 ~~i~~~~k~a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~I 141 (160)
..+..+.+.++++||+||||+++ ||..+.|..+ .+++.++|
T Consensus 156 ~~i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~---~~~l~~~L 197 (197)
T cd03020 156 NPVAANLALGRQLGVNGTPTIVLADGRVVPGAPP---AAQLEALL 197 (197)
T ss_pred chHHHHHHHHHHcCCCcccEEEECCCeEecCCCC---HHHHHhhC
Confidence 34567788999999999999999 6999988665 77777653
No 18
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.18 E-value=0.0007 Score=44.83 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=29.2
Q ss_pred HhhcCCccccceEEECCE-EecCCCCCCCHHHHHHHHHHHh
Q 031378 106 FSATRGVYATPTFFVNGF-SLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 106 ~a~~~GV~GTPTffING~-~~~ga~s~~~~e~~~~~Id~~l 145 (160)
.+++.||.|+||+++||+ .+.|.. +.+++.+.|++++
T Consensus 45 ~~~~~~v~~vPt~~~~g~~~~~G~~---~~~~l~~~l~~~~ 82 (82)
T TIGR00411 45 KAMEYGIMAVPAIVINGDVEFIGAP---TKEELVEAIKKRL 82 (82)
T ss_pred HHHHcCCccCCEEEECCEEEEecCC---CHHHHHHHHHhhC
Confidence 456799999999999998 444543 4899999988764
No 19
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=96.89 E-value=0.0017 Score=45.64 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=24.0
Q ss_pred HHhhcCCccccceEEE---CCE---EecCCCCCCCHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV---NGF---SLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG~---~~~ga~s~~~~e~~~~~I 141 (160)
+.++++||+||||+++ ||+ .+.|.. +.+++.+++
T Consensus 73 ~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~---~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVNGTPTIVFLDKDGKIVYRIPGYL---SPEELLKML 112 (112)
T ss_dssp HHHHHTT--SSSEEEECTTTSCEEEEEESS-----HHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEcCCCCEEEEecCCC---CHHHHHhhC
Confidence 5789999999999999 477 445644 488888764
No 20
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.58 E-value=0.0024 Score=42.56 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=22.3
Q ss_pred HHHHHhhcCCccccceEEECCEEecC
Q 031378 102 VSFKFSATRGVYATPTFFVNGFSLAG 127 (160)
Q Consensus 102 ~~~k~a~~~GV~GTPTffING~~~~g 127 (160)
.+.+.+++.||.||||+++||....+
T Consensus 71 ~~~~~~~~~g~~g~Pt~v~~~~~~~~ 96 (98)
T cd02972 71 ADTALARALGVTGTPTFVVNGEKYSG 96 (98)
T ss_pred HHHHHHHHcCCCCCCEEEECCEEcCC
Confidence 67888999999999999999965543
No 21
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.37 E-value=0.0042 Score=41.55 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=26.1
Q ss_pred HHHHhhcCCccccceEEECCEEe-cCCCCCCCHHHHHHHHH
Q 031378 103 SFKFSATRGVYATPTFFVNGFSL-AGAGSPLDYNGWRKVID 142 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffING~~~-~ga~s~~~~e~~~~~Id 142 (160)
++....+.||.++||++|||+.. .|. -.+.++++++|+
T Consensus 38 ~~~~~~~ygv~~vPalvIng~~~~~G~--~p~~~el~~~l~ 76 (76)
T PF13192_consen 38 DFEEIEKYGVMSVPALVINGKVVFVGR--VPSKEELKELLE 76 (76)
T ss_dssp THHHHHHTT-SSSSEEEETTEEEEESS----HHHHHHHHHH
T ss_pred CHHHHHHcCCCCCCEEEECCEEEEEec--CCCHHHHHHHhC
Confidence 44445889999999999999974 451 334777777763
No 22
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.29 E-value=0.007 Score=45.42 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=37.8
Q ss_pred HHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378 103 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKG 149 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~ 149 (160)
+-..+.+.||.|.||+++ ||+.+....+..+.+++.+.|++.+.+..
T Consensus 80 ~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 80 SEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred CHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 355689999999999999 99998544445568999999999987653
No 23
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.26 E-value=0.0078 Score=44.25 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=34.4
Q ss_pred HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
.+.|.+.||.|.||+++ ||+.+. ..+..+.+++.++|+.++
T Consensus 77 ~~La~~~~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 77 AKVAKKLGLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHHHHcCCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 45689999999999988 999875 666677999999998764
No 24
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.92 E-value=0.0096 Score=42.42 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=31.4
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
..+.++||.++||+++ ||+.+.-..+..+.+++.++|+++
T Consensus 70 ~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 70 RLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred HHHHHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhcC
Confidence 4578899999999997 898875444566789999988753
No 25
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.85 E-value=0.019 Score=41.31 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=35.0
Q ss_pred HHHhhcCCccccceEEE---C-CEEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378 104 FKFSATRGVYATPTFFV---N-GFSLAGAGSPLDYNGWRKVIDPLLSEKGK 150 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI---N-G~~~~ga~s~~~~e~~~~~Id~~l~~~~~ 150 (160)
...+.+.||.|+||+++ | |+.+.-..+.++.+++.++|+.++.+..|
T Consensus 74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 124 (125)
T cd02951 74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKAYK 124 (125)
T ss_pred HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhhhc
Confidence 35578899999999877 4 56553333456689999999999877654
No 26
>PRK10996 thioredoxin 2; Provisional
Probab=95.71 E-value=0.016 Score=43.04 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=32.2
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
..++++||.|+||+++ ||+.+.-..+..+.+++.++|++++
T Consensus 97 ~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 97 ELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred HHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 3578899999999999 9998754344566899999988753
No 27
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.55 E-value=0.017 Score=39.16 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=32.0
Q ss_pred HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378 104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~ 143 (160)
..+++++||.++||+++ ||+......+..+.+++.++|++
T Consensus 61 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 61 KELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp HHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred chhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 44688999999999999 88887544446679999998875
No 28
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.51 E-value=0.018 Score=38.52 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=23.5
Q ss_pred hhcCCccccceEEECCEEec-CCCCCCCHHHHHHHH
Q 031378 107 SATRGVYATPTFFVNGFSLA-GAGSPLDYNGWRKVI 141 (160)
Q Consensus 107 a~~~GV~GTPTffING~~~~-ga~s~~~~e~~~~~I 141 (160)
+.+.||.|+||+++||+.+- |. ..+.+++.+++
T Consensus 42 a~~~~v~~vPti~i~G~~~~~G~--~~~~~~l~~~l 75 (76)
T TIGR00412 42 ILEAGVTATPGVAVDGELVIMGK--IPSKEEIKEIL 75 (76)
T ss_pred HHHcCCCcCCEEEECCEEEEEec--cCCHHHHHHHh
Confidence 56689999999999997763 21 12346666654
No 29
>PRK09381 trxA thioredoxin; Provisional
Probab=95.45 E-value=0.026 Score=39.49 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=31.6
Q ss_pred HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
.++++||.++||+++ ||+.+....+..+.+++.+.|++.+
T Consensus 67 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 67 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred HHHhCCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 357789999999988 8988754444566899999998765
No 30
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.40 E-value=0.024 Score=38.62 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=28.9
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id 142 (160)
..++++||.|+||+++ ||+.+....+..+.+++.++|+
T Consensus 57 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 57 QIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred HHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHHHHHhC
Confidence 4578899999999998 8887654444556888887764
No 31
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.27 E-value=0.019 Score=36.43 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=24.7
Q ss_pred hhcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378 107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I 141 (160)
.+..|+.++|++++||+.+.|. +.+++.++|
T Consensus 43 ~~~~~~~~vP~~~~~~~~~~g~----~~~~i~~~i 73 (74)
T TIGR02196 43 LKVLGQRGVPVIVIGHKIIVGF----DPEKLDQLL 73 (74)
T ss_pred HHHhCCCcccEEEECCEEEeeC----CHHHHHHHh
Confidence 5567999999999999987653 368887776
No 32
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=95.17 E-value=0.03 Score=41.89 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=33.9
Q ss_pred HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
..++++||.|+||+++ ||+.+....+..+.+++.+.|+.++.+.
T Consensus 67 ~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 67 PEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 3467899999999988 6887643344556899999999998543
No 33
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.05 E-value=0.023 Score=39.69 Aligned_cols=38 Identities=24% Similarity=0.116 Sum_probs=28.4
Q ss_pred HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
.+++++|.++|||++ ||+.+.-. .+.+.+.+.+.|+++
T Consensus 63 ~~~~~~v~~~Pt~~~~~~g~~~~~~-~G~~~~~~~~~i~~~ 102 (102)
T cd02948 63 TLKRYRGKCEPTFLFYKNGELVAVI-RGANAPLLNKTITEL 102 (102)
T ss_pred HHHHcCCCcCcEEEEEECCEEEEEE-ecCChHHHHHHHhhC
Confidence 468999999999999 89876322 233578888888753
No 34
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=94.80 E-value=0.044 Score=42.52 Aligned_cols=43 Identities=30% Similarity=0.553 Sum_probs=32.9
Q ss_pred HhhcCCccccc-eEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 106 FSATRGVYATP-TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 106 ~a~~~GV~GTP-TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
.++.+||.|+| ||+| ||++..-..+..+.++|++.|++++.+.
T Consensus 134 ~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 134 LGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred HHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 45688999999 5666 6887654445667899999999998654
No 35
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.77 E-value=0.084 Score=35.62 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=25.1
Q ss_pred hcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
...|++++|++||||+.+-| ++++.++...-+
T Consensus 52 ~~~~~~~vP~ifi~g~~igg------~~~~~~~~~~~~ 83 (85)
T PRK11200 52 VGKPVETVPQIFVDQKHIGG------CTDFEAYVKENL 83 (85)
T ss_pred HCCCCCcCCEEEECCEEEcC------HHHHHHHHHHhc
Confidence 34588999999999999843 888888776543
No 36
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=94.52 E-value=0.045 Score=35.58 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=26.3
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~I 141 (160)
....++||+++||+++ +|+.+....+..+.+++.++|
T Consensus 54 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 54 ELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred hHHHhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHh
Confidence 3467889999999988 887554333455567777665
No 37
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=94.48 E-value=0.071 Score=35.85 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=29.3
Q ss_pred HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
..+++||.++||+++ ||+......+..+.+++.+.|++.
T Consensus 60 ~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 60 IAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred HHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence 467899999999999 887654333455678888888764
No 38
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=94.28 E-value=0.05 Score=37.41 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=28.2
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~I 141 (160)
..+.++||.++||+++ ||+.+....+..+.+++.+++
T Consensus 58 ~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 58 EIAEAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred HHHHHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhh
Confidence 3467889999999999 888875444556688877765
No 39
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=94.23 E-value=0.055 Score=41.41 Aligned_cols=42 Identities=36% Similarity=0.647 Sum_probs=31.4
Q ss_pred HHhhcCCccccc-eEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378 105 KFSATRGVYATP-TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 105 k~a~~~GV~GTP-TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
+.++.+||.|+| +|+| ||+...-..+..+.++|.+.|++.+.
T Consensus 128 ~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 128 KLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred chHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 346678999999 6777 68876533345668999999998874
No 40
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.01 E-value=0.047 Score=37.79 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.4
Q ss_pred HHhhcCCccccceEEECCEEec
Q 031378 105 KFSATRGVYATPTFFVNGFSLA 126 (160)
Q Consensus 105 k~a~~~GV~GTPTffING~~~~ 126 (160)
..+.++||.++|||++||+.+.
T Consensus 56 e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 56 DEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred HHHHHcCCccCCEEEECCEEEE
Confidence 4578999999999999999874
No 41
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.079 Score=41.19 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=30.2
Q ss_pred HHHHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 103 SFKFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
...+|+..+|+|||||+. +|..+-...++.+-+++..++.=.-
T Consensus 104 ~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 104 TEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred HHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 356799999999999999 6665432233445888887776443
No 42
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=94.00 E-value=0.048 Score=34.77 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.4
Q ss_pred HhhcCCccccceEEECCEEe
Q 031378 106 FSATRGVYATPTFFVNGFSL 125 (160)
Q Consensus 106 ~a~~~GV~GTPTffING~~~ 125 (160)
.+++.||.++||++|||+..
T Consensus 44 l~~~~~i~~vPti~i~~~~~ 63 (67)
T cd02973 44 LADEYGVMSVPAIVINGKVE 63 (67)
T ss_pred HHHHcCCcccCEEEECCEEE
Confidence 46789999999999999865
No 43
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.088 Score=40.35 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=37.2
Q ss_pred HHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378 103 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
.-..+.+.+|+..||+++ ||...+...+..+.+.+.+.|++.+.
T Consensus 104 ~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 104 HPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ccchHhhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 345688999999999999 99998766667779999999998764
No 44
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=93.81 E-value=0.15 Score=41.36 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=34.6
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
..+.+.||.|+||+++ ||+.+.-..+..+.+++.+++.+.+.
T Consensus 97 ~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 97 NLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred HHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 4578899999999998 99987644456789999999998874
No 45
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=93.79 E-value=0.08 Score=35.81 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
...+.++||.++|++++ +|.......+.++.+++.+.|++.
T Consensus 59 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 59 KDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred HHHHHhCCCCcCCEEEEecCCCcceeecCCCCHHHHHHHHHhc
Confidence 34578899999999977 444211223366799999988764
No 46
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.68 E-value=0.074 Score=38.86 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=27.6
Q ss_pred HhhcCCccccceEEE--CCEEecCCCC-CCCHHHHHHHHH
Q 031378 106 FSATRGVYATPTFFV--NGFSLAGAGS-PLDYNGWRKVID 142 (160)
Q Consensus 106 ~a~~~GV~GTPTffI--NG~~~~ga~s-~~~~e~~~~~Id 142 (160)
+....+|.|||||++ ||+.+....+ ..+.+++.++++
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 344578999999999 9988764433 566888888764
No 47
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=93.50 E-value=0.08 Score=36.09 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=24.7
Q ss_pred HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHH
Q 031378 106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~ 140 (160)
..++.||+++||+++ ||+......+..+.+++.++
T Consensus 67 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 67 LKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred HHHhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence 467889999999988 77765444445556666554
No 48
>PHA02278 thioredoxin-like protein
Probab=93.29 E-value=0.1 Score=37.12 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=24.6
Q ss_pred HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHH
Q 031378 106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRK 139 (160)
Q Consensus 106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~ 139 (160)
.+++++|.|+|||++ ||+.+.-..+..+.+++.+
T Consensus 64 l~~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 64 AVKLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred HHHHCCCccccEEEEEECCEEEEEEeCCCCHHHHHh
Confidence 578999999999999 9998742223344666554
No 49
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.19 E-value=0.098 Score=35.89 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=27.2
Q ss_pred HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHH
Q 031378 106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id 142 (160)
.+.+++|.++||+++ ||... ...+..+.+++.++|+
T Consensus 63 ~~~~~~i~~~Pt~~~~~~g~~~-~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 63 LSGRFFVTALPTIYHAKDGVFR-RYQGPRDKEDLISFIE 100 (101)
T ss_pred HHHHcCCcccCEEEEeCCCCEE-EecCCCCHHHHHHHHh
Confidence 467889999999998 78752 2334666888888775
No 50
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=93.17 E-value=0.089 Score=35.62 Aligned_cols=36 Identities=28% Similarity=0.273 Sum_probs=24.9
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~I 141 (160)
..++++||+++||+++ ||+.+.- ..+...+++.+.|
T Consensus 59 ~~~~~~~i~~~Pt~~~~~~g~~~~~-~~g~~~~~l~~~~ 96 (97)
T cd02984 59 EISEKFEITAVPTFVFFRNGTIVDR-VSGADPKELAKKV 96 (97)
T ss_pred HHHHhcCCccccEEEEEECCEEEEE-EeCCCHHHHHHhh
Confidence 4578899999999988 8887632 2234456666554
No 51
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.90 E-value=0.2 Score=35.88 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=29.4
Q ss_pred HHhhcCCccccceEEE--C----C-EEecCCCCCCCHHHHHHHHHHHhh
Q 031378 105 KFSATRGVYATPTFFV--N----G-FSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--N----G-~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
..+.+.||.++||+++ | | ..+.|..+ -+++.++|+..+.
T Consensus 66 ~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~---~~el~~~i~~i~~ 111 (113)
T cd02975 66 EKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA---GYEFASLIEDIVR 111 (113)
T ss_pred HHHHHcCCCcCCEEEEEeCCeecceEEEEecCc---hHHHHHHHHHHHh
Confidence 4678899999999999 2 2 23556555 7889999988763
No 52
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=92.60 E-value=0.15 Score=33.79 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=25.2
Q ss_pred HHHhhcCCccccceEEE--CC-EEecCCCCCCCHHHHHHH
Q 031378 104 FKFSATRGVYATPTFFV--NG-FSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI--NG-~~~~ga~s~~~~e~~~~~ 140 (160)
-..+++.||.++||+++ +| .......+..+.+++.+.
T Consensus 61 ~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 61 NDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 45678899999999988 44 444444445567766553
No 53
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=92.59 E-value=0.16 Score=34.99 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=25.9
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRK 139 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~ 139 (160)
..+++.+|.++||+++ ||+......+..+.+++.+
T Consensus 63 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 63 MLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred HHHHHcCCCccCEEEEEcCCCCcccCCCCCCHHHHHh
Confidence 3477899999999988 8876655555666776654
No 54
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=92.55 E-value=0.16 Score=35.48 Aligned_cols=36 Identities=8% Similarity=0.211 Sum_probs=24.2
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~I 141 (160)
..+++.||.|+|||++ ||+.+... .+...++++..+
T Consensus 62 ~l~~~~~V~~~Pt~~~~~~G~~v~~~-~G~~~~~l~~~~ 99 (103)
T cd02985 62 ELCRREKIIEVPHFLFYKDGEKIHEE-EGIGPDELIGDV 99 (103)
T ss_pred HHHHHcCCCcCCEEEEEeCCeEEEEE-eCCCHHHHHHHH
Confidence 4578899999999988 89876322 223345555544
No 55
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=92.30 E-value=0.13 Score=34.99 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=24.9
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~ 140 (160)
..+.+.+|.++||+++ ||+......+..+.+++.++
T Consensus 64 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 64 ELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred hhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhh
Confidence 4467889999999888 77754333345557776654
No 56
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=92.25 E-value=0.16 Score=35.03 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=26.0
Q ss_pred HHhhcCCccccceEEE--CCE-----EecCCCCCCCHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGF-----SLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~-----~~~ga~s~~~~e~~~~~I 141 (160)
..+.++||.|+||+++ +|. ......+..+.+++.++|
T Consensus 65 ~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 65 PLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred HHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 4567899999999998 553 222334566688887766
No 57
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=92.22 E-value=0.17 Score=35.26 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=24.7
Q ss_pred HHhhcCCccccceEEE--CCEEe-cCCCCCCCHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSL-AGAGSPLDYNGWRKV 140 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~-~ga~s~~~~e~~~~~ 140 (160)
..+++.||.++||+++ ||+.. ....+..+.+++.++
T Consensus 69 ~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 69 DIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred HHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhh
Confidence 3578899999999988 88732 222345557776654
No 58
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=92.14 E-value=0.17 Score=36.76 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=23.9
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGW 137 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~ 137 (160)
..+.+.||.|.|||++ ||+.+....+..+.+++
T Consensus 74 ~la~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~ 108 (111)
T cd02965 74 ALAARFGVLRTPALLFFRDGRYVGVLAGIRDWDEY 108 (111)
T ss_pred HHHHHcCCCcCCEEEEEECCEEEEEEeCccCHHHH
Confidence 5588899999999999 99998644443334443
No 59
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=91.84 E-value=0.32 Score=38.58 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=31.5
Q ss_pred HHHHhhcCCccccceEEE--CCEEe----cCCCCCCCHHHHHHHHHHHhh
Q 031378 103 SFKFSATRGVYATPTFFV--NGFSL----AGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI--NG~~~----~ga~s~~~~e~~~~~Id~~l~ 146 (160)
+.+.+++.||.++|||++ ||... .|..+ .+++.++|+..+.
T Consensus 66 ~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~---~~~l~~~i~~~~~ 112 (215)
T TIGR02187 66 DKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA---GYEFAALIEDIVR 112 (215)
T ss_pred cHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC---HHHHHHHHHHHHH
Confidence 456789999999999999 66543 35444 7889999988864
No 60
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=91.67 E-value=0.24 Score=34.31 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
..++++||.++||+++ ||.... ..+..+.+++.++++..
T Consensus 63 ~~~~~~~I~~~Pt~~l~~~~~~~~-~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 63 SIASEFGVRGYPTIKLLKGDLAYN-YRGPRTKDDIVEFANRV 103 (104)
T ss_pred hHHhhcCCccccEEEEEcCCCcee-ecCCCCHHHHHHHHHhh
Confidence 3477899999999988 664432 34466789888888753
No 61
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=91.59 E-value=0.19 Score=34.69 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=26.0
Q ss_pred HHhhcCCccccceEEE-C---CEEecCCCCCCCHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV-N---GFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 105 k~a~~~GV~GTPTffI-N---G~~~~ga~s~~~~e~~~~~I 141 (160)
..++++||.++||+++ + |+...-..+..+.+++.++|
T Consensus 63 ~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 63 ALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 4567889999999988 3 66543333456688877765
No 62
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=91.38 E-value=0.36 Score=34.20 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=33.9
Q ss_pred HHHhhcCCccccceEEE----CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378 104 FKFSATRGVYATPTFFV----NGFSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI----NG~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
.+++...+|.|+|++++ ||..+.-..+.++.++|...++....
T Consensus 66 ~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 66 QRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred HHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 45688899999999988 57776544457779999999988764
No 63
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=91.21 E-value=0.22 Score=33.80 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=23.7
Q ss_pred HHhhcCCccccceEEE--CC-EEecCCCCCCCHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NG-FSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG-~~~~ga~s~~~~e~~~~~ 140 (160)
..++++||+++||+++ +| +......+..+.+++.+.
T Consensus 66 ~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 66 DLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred hhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 4578899999999988 34 333333345567766654
No 64
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=91.14 E-value=0.19 Score=34.61 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=23.9
Q ss_pred HHhhcCCccccceEEE--CC-EEecCCCCCCC-HHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NG-FSLAGAGSPLD-YNGWRKV 140 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG-~~~~ga~s~~~-~e~~~~~ 140 (160)
..+++.||.++||+++ +| +......+..+ .+++.+.
T Consensus 64 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 64 SLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred HHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 3467889999999998 55 54433334444 6666654
No 65
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=90.89 E-value=0.37 Score=32.75 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=23.2
Q ss_pred HhhcCCccccceEEE--CC-EEecCCCCCCCHHHHHHH
Q 031378 106 FSATRGVYATPTFFV--NG-FSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 106 ~a~~~GV~GTPTffI--NG-~~~~ga~s~~~~e~~~~~ 140 (160)
.++++||.|+||+++ +| .......+..+.+++.+.
T Consensus 64 ~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 101 (103)
T cd03001 64 LAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSA 101 (103)
T ss_pred HHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHH
Confidence 467889999999987 66 222233345667776654
No 66
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=90.54 E-value=0.43 Score=31.26 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=22.6
Q ss_pred hhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378 107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id 142 (160)
.+..|+.++|++|+||+.+-| .+++.++..
T Consensus 47 ~~~~g~~~vP~v~i~g~~igg------~~~~~~~~~ 76 (84)
T TIGR02180 47 EEITGQRTVPNIFINGKFIGG------CSDLLALYK 76 (84)
T ss_pred HHHhCCCCCCeEEECCEEEcC------HHHHHHHHH
Confidence 455689999999999998854 566665543
No 67
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=90.48 E-value=0.34 Score=31.42 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=21.7
Q ss_pred cCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378 109 TRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 109 ~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I 141 (160)
..|...+|.+||||+.+-| .+++.+++
T Consensus 45 ~~g~~~vP~ifi~g~~igg------~~~l~~~l 71 (72)
T cd03029 45 VTGAMTVPQVFIDGELIGG------SDDLEKYF 71 (72)
T ss_pred HhCCCCcCeEEECCEEEeC------HHHHHHHh
Confidence 3588999999999998843 78877765
No 68
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=90.29 E-value=0.27 Score=34.30 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=24.0
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~ 140 (160)
..+++.||.|+||+++ +|.. ....+..+.+++.++
T Consensus 63 ~l~~~~~V~~~PT~~lf~~g~~-~~~~G~~~~~~l~~f 99 (100)
T cd02999 63 SLLSRYGVVGFPTILLFNSTPR-VRYNGTRTLDSLAAF 99 (100)
T ss_pred HHHHhcCCeecCEEEEEcCCce-eEecCCCCHHHHHhh
Confidence 4578999999999998 6733 223344557776654
No 69
>PHA02125 thioredoxin-like protein
Probab=90.18 E-value=0.38 Score=31.67 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.5
Q ss_pred HHhhcCCccccceEEECCEEe
Q 031378 105 KFSATRGVYATPTFFVNGFSL 125 (160)
Q Consensus 105 k~a~~~GV~GTPTffING~~~ 125 (160)
..+++.||.++|||+ +|+.+
T Consensus 37 ~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 37 ELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred HHHHHcCCceeCeEE-CCEEE
Confidence 458889999999987 88754
No 70
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=89.93 E-value=0.32 Score=38.54 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=27.4
Q ss_pred HHhhcCCccccceEEEC--CEEecCCCCCCCHHHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFVN--GFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 105 k~a~~~GV~GTPTffIN--G~~~~ga~s~~~~e~~~~~Id~ 143 (160)
..++++||.++||++++ |+.+.|..+ .+++.+.|..
T Consensus 177 ~~~~~~~V~~vPtl~i~~~~~~~~G~~~---~~~l~~~l~~ 214 (215)
T TIGR02187 177 DLAEKYGVMSVPKIVINKGVEEFVGAYP---EEQFLEYILS 214 (215)
T ss_pred HHHHHhCCccCCEEEEecCCEEEECCCC---HHHHHHHHHh
Confidence 45788999999999996 443667555 8888887764
No 71
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=89.73 E-value=0.95 Score=30.70 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=21.7
Q ss_pred CccccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 111 GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
++.+.|++||||+.+-| .+++.+++.+
T Consensus 54 ~~~tVP~ifi~g~~igG------~~dl~~~~~~ 80 (86)
T TIGR02183 54 PVETVPQIFVDEKHVGG------CTDFEQLVKE 80 (86)
T ss_pred CCCCcCeEEECCEEecC------HHHHHHHHHh
Confidence 67899999999998843 6887777654
No 72
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=89.01 E-value=0.73 Score=33.70 Aligned_cols=40 Identities=5% Similarity=0.194 Sum_probs=28.4
Q ss_pred HHHhhcCCcc--ccceEEE--CCE--EecCCCCC-CCHHHHHHHHHH
Q 031378 104 FKFSATRGVY--ATPTFFV--NGF--SLAGAGSP-LDYNGWRKVIDP 143 (160)
Q Consensus 104 ~k~a~~~GV~--GTPTffI--NG~--~~~ga~s~-~~~e~~~~~Id~ 143 (160)
..++.+.||+ |.||+.+ ||. ......+. .+.+++.+.|.+
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 68 MELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 5679999999 9999877 774 11123334 779998887764
No 73
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.85 E-value=0.69 Score=38.58 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=31.8
Q ss_pred HHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 103 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
-...|..+||+.+|||+. ||+.++-.+ +.+...|++++.+..
T Consensus 63 c~~taa~~gV~amPTFiff~ng~kid~~q-GAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 63 CRGTAATNGVNAMPTFIFFRNGVKIDQIQ-GADASGLEEKVAKYA 106 (288)
T ss_pred hhchhhhcCcccCceEEEEecCeEeeeec-CCCHHHHHHHHHHHh
Confidence 345689999999999987 999986332 344577888887766
No 74
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=88.52 E-value=0.87 Score=36.44 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=35.2
Q ss_pred cccCChhHHHHHHHHHHHhhcCCccc--cceEEECCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378 89 SGFSDRSTDLLTRVSFKFSATRGVYA--TPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE 147 (160)
Q Consensus 89 ~~l~~~~~~~~i~~~~k~a~~~GV~G--TPTffING~~~~ga~s~~~~e~~~~~Id~~l~~ 147 (160)
.-|.+++..++ ...|++.+|.++ ||.++|||..... ..+.+.+...|+.....
T Consensus 46 D~fa~~~~t~R---Qr~Y~~~~~~~~vYTPQ~vVnG~~~~~---g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 46 DPFASPEFTQR---QRAYARRFGLRSVYTPQVVVNGREHRV---GSDRAAVEAAIQAARAR 100 (202)
T ss_dssp -TT--HHHHHH---HHHHHHHTT-S---SSEEEETTTEEEE---TT-HHHHHHHHHHHHHT
T ss_pred CccCChhHHHH---HHHHHHHhCCCCCcCCeEEECCeeeee---ccCHHHHHHHHHHhhcc
Confidence 44555555444 456777776665 9999999998875 44588899999988765
No 75
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=88.52 E-value=0.69 Score=30.37 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=21.9
Q ss_pred hcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378 108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id 142 (160)
+..|..++|++||||+.+-| ++++.++.+
T Consensus 43 ~~~g~~~vP~i~i~g~~igg------~~~~~~~~~ 71 (79)
T TIGR02181 43 QRSGRRTVPQIFIGDVHVGG------CDDLYALDR 71 (79)
T ss_pred HHhCCCCcCEEEECCEEEcC------hHHHHHHHH
Confidence 34578999999999998854 666666544
No 76
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=0.53 Score=39.93 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=36.4
Q ss_pred hhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378 107 SATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE 147 (160)
Q Consensus 107 a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~ 147 (160)
+.++||.+-||++. +|+++.|-.|....++++++|+..+.+
T Consensus 90 AaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 90 AAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred HHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 78899999999877 999998877777799999999998865
No 77
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=88.35 E-value=0.96 Score=30.74 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=29.2
Q ss_pred HHhhcCCcc--ccceEEE--C--CEEecCCCCCCCHHHHHHHHHHH
Q 031378 105 KFSATRGVY--ATPTFFV--N--GFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 105 k~a~~~GV~--GTPTffI--N--G~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
..+..+||. ++|++++ + |.++.-..+..+.+++.++|+..
T Consensus 57 ~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 57 RHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred HHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 357889999 9999999 5 66664322334789999888764
No 78
>PTZ00051 thioredoxin; Provisional
Probab=87.83 E-value=0.35 Score=32.72 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.9
Q ss_pred HHHhhcCCccccceEEE--CCEEec
Q 031378 104 FKFSATRGVYATPTFFV--NGFSLA 126 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI--NG~~~~ 126 (160)
...++++||.++||+++ ||+.+.
T Consensus 61 ~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 61 SEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred HHHHHHCCCceeeEEEEEeCCeEEE
Confidence 34678999999999988 887763
No 79
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=87.83 E-value=1.1 Score=27.90 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=13.8
Q ss_pred CccccceEEECCEEe
Q 031378 111 GVYATPTFFVNGFSL 125 (160)
Q Consensus 111 GV~GTPTffING~~~ 125 (160)
|..++|++||||+.+
T Consensus 46 g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 46 GVRTVPQVFIDGKFI 60 (60)
T ss_dssp SSSSSSEEEETTEEE
T ss_pred CCCccCEEEECCEEC
Confidence 999999999999864
No 80
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.45 E-value=0.61 Score=33.42 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=28.5
Q ss_pred HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378 104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~ 143 (160)
...+.+++|.++|||++ ||+.+.- .-+-+.+++++.|+.
T Consensus 64 ~~~~~~~~V~~~PTf~f~k~g~~~~~-~vGa~~~~l~~~i~~ 104 (106)
T KOG0907|consen 64 EEVAKEFNVKAMPTFVFYKGGEEVDE-VVGANKAELEKKIAK 104 (106)
T ss_pred HhHHHhcCceEeeEEEEEECCEEEEE-EecCCHHHHHHHHHh
Confidence 44589999999999999 8888642 223445677777764
No 81
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=87.23 E-value=0.76 Score=41.62 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=25.9
Q ss_pred HHhhcCCccccceEEECCEEe-cCCCCCCCHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFVNGFSL-AGAGSPLDYNGWRKVI 141 (160)
Q Consensus 105 k~a~~~GV~GTPTffING~~~-~ga~s~~~~e~~~~~I 141 (160)
..+.++||.+||+++|||+++ .|.. +.+++.++|
T Consensus 520 ~~~~~~~v~~vP~~~i~~~~~~~G~~---~~~~~~~~~ 554 (555)
T TIGR03143 520 DLKDEYGIMSVPAIVVDDQQVYFGKK---TIEEMLELI 554 (555)
T ss_pred HHHHhCCceecCEEEECCEEEEeeCC---CHHHHHHhh
Confidence 356789999999999999654 4533 488877665
No 82
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=87.01 E-value=0.89 Score=30.19 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=22.5
Q ss_pred hcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378 108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I 141 (160)
...|...+|.+||||+.+-| ++++.++|
T Consensus 51 ~~~g~~~vP~i~i~g~~igG------~~~l~~~l 78 (79)
T TIGR02190 51 AVTGATTVPQVFIGGKLIGG------SDELEAYL 78 (79)
T ss_pred HHHCCCCcCeEEECCEEEcC------HHHHHHHh
Confidence 34688999999999998854 68877765
No 83
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=86.66 E-value=0.96 Score=33.77 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
..++..||.++|++++ ||+.+.-..+..+.+++.++++++
T Consensus 129 ~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 129 QVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred hHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 3457789999997665 698774333455588888888754
No 84
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=86.26 E-value=0.9 Score=39.06 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=32.7
Q ss_pred HHhhcCCccccceEEE--CCEE-ecCCCCCCCHHHHHHHHHHHhhh
Q 031378 105 KFSATRGVYATPTFFV--NGFS-LAGAGSPLDYNGWRKVIDPLLSE 147 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~-~~ga~s~~~~e~~~~~Id~~l~~ 147 (160)
+.++++||.|+||+++ ||.. .....+..+.+++.+.+...+..
T Consensus 66 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 66 DLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGP 111 (462)
T ss_pred HHHHhCCCccccEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCC
Confidence 4578899999999988 7775 32334467799999999887743
No 85
>PTZ00102 disulphide isomerase; Provisional
Probab=86.11 E-value=1 Score=39.22 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=33.4
Q ss_pred HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378 104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE 147 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~ 147 (160)
...+++.||.|+||+++ ||..+ ...+.++.+++.+.++..+.+
T Consensus 96 ~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 96 MELAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred HHHHHhcCCCcccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCC
Confidence 34678899999999988 77654 344567799999999988754
No 86
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=84.64 E-value=1.2 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=20.2
Q ss_pred CCccccceEEECCEEecCCCCCCCHHHHHHH
Q 031378 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~ 140 (160)
.++.++|+++++|+.+.|. +.+++++.
T Consensus 46 ~~~~~vP~i~~~~~~i~g~----~~~~l~~~ 72 (73)
T cd02976 46 NGYRSVPVVVIGDEHLSGF----RPDKLRAL 72 (73)
T ss_pred cCCcccCEEEECCEEEecC----CHHHHHhh
Confidence 4899999999999988653 34555543
No 87
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=84.47 E-value=1.7 Score=28.34 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=22.1
Q ss_pred hcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378 108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id 142 (160)
+..|+.++|++|+||..+-| ++++.++.+
T Consensus 47 ~~~g~~~~P~v~~~g~~igg------~~~~~~~~~ 75 (82)
T cd03419 47 ELTGQRTVPNVFIGGKFIGG------CDDLMALHK 75 (82)
T ss_pred HHhCCCCCCeEEECCEEEcC------HHHHHHHHH
Confidence 45689999999999998743 666666544
No 88
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=84.47 E-value=0.87 Score=32.17 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.1
Q ss_pred HHhhcCCccccceEEE--CCEEec
Q 031378 105 KFSATRGVYATPTFFV--NGFSLA 126 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ 126 (160)
..+.++||.++||+++ ||+.+.
T Consensus 67 ~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 67 FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred HHHHhcCCCcCCEEEEEECCEEEE
Confidence 5578999999999998 999875
No 89
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=83.21 E-value=2.7 Score=29.96 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.1
Q ss_pred HHhhcCCccccceEEE--CCEEe
Q 031378 105 KFSATRGVYATPTFFV--NGFSL 125 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~ 125 (160)
..+.+++|.++||+++ ||+.+
T Consensus 66 ~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 66 FLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred HHHHHCCCccCCEEEEEECCEEE
Confidence 3578999999999999 89876
No 90
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=83.15 E-value=1.5 Score=28.44 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=19.9
Q ss_pred CCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~I 141 (160)
.|-.+.|++|+||+.+- + ++++.++.
T Consensus 47 ~g~~~vP~v~i~~~~iG---g---~~~~~~~~ 72 (73)
T cd03027 47 TGSSVVPQIFFNEKLVG---G---LTDLKSLE 72 (73)
T ss_pred hCCCCcCEEEECCEEEe---C---HHHHHhhc
Confidence 45577899999999884 3 78877753
No 91
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=82.31 E-value=3 Score=28.09 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=19.2
Q ss_pred CccccceEEECCEEecCCCCCCCHHHHHH
Q 031378 111 GVYATPTFFVNGFSLAGAGSPLDYNGWRK 139 (160)
Q Consensus 111 GV~GTPTffING~~~~ga~s~~~~e~~~~ 139 (160)
|.+.+|.+||||+.+-| ..+.+++.+
T Consensus 50 g~~tvP~I~i~~~~igg---~~d~~~~~~ 75 (80)
T COG0695 50 GQRTVPQIFIGGKHVGG---CDDLDALEA 75 (80)
T ss_pred CCCCcCEEEECCEEEeC---cccHHHHHh
Confidence 99999999999997743 334555543
No 92
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=82.30 E-value=3.2 Score=30.46 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=24.3
Q ss_pred hcCCccccceEEE---CCEEecCCCCC-----CCHHHHHHHHHHHh
Q 031378 108 ATRGVYATPTFFV---NGFSLAGAGSP-----LDYNGWRKVIDPLL 145 (160)
Q Consensus 108 ~~~GV~GTPTffI---NG~~~~ga~s~-----~~~e~~~~~Id~~l 145 (160)
...|+.|+||+++ +|+++.+.+.- ++-..|.+++++..
T Consensus 74 ~~~~~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 74 AMTGQGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred HhcCCCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 3669999999999 78887543221 33345666555543
No 93
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=82.02 E-value=2.2 Score=35.39 Aligned_cols=42 Identities=7% Similarity=-0.077 Sum_probs=29.5
Q ss_pred HHhhcCCccccceEEE---CC-EEecCCCCCCCHHHHHHHHHHHhh
Q 031378 105 KFSATRGVYATPTFFV---NG-FSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG-~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
..+.++||.++||+++ || +...-..+..+.+++.+.|..+..
T Consensus 220 ~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 220 GQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred HHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 3567899999999998 34 333222235568999988887765
No 94
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=82.00 E-value=1.9 Score=32.77 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=24.6
Q ss_pred CccccceEEE---CCEE-ecCCCCCCCHHHHHHHHHHHh
Q 031378 111 GVYATPTFFV---NGFS-LAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 111 GV~GTPTffI---NG~~-~~ga~s~~~~e~~~~~Id~~l 145 (160)
||.|+||.++ +|.. ..-..+..+.+++.+.|+++|
T Consensus 115 ~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 115 RPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 8999999998 5443 322233556999999988764
No 95
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=82.00 E-value=1.7 Score=30.54 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=21.6
Q ss_pred HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHH
Q 031378 106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRK 139 (160)
Q Consensus 106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~ 139 (160)
.++++||.++|+++| || ......+..+.+++.+
T Consensus 85 ~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 85 ISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 466789999999888 66 3322333445666654
No 96
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=81.65 E-value=0.91 Score=33.11 Aligned_cols=22 Identities=18% Similarity=0.390 Sum_probs=19.2
Q ss_pred HHhhcCCccccceEEE--CCEEec
Q 031378 105 KFSATRGVYATPTFFV--NGFSLA 126 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ 126 (160)
..+.+.||++.|||++ ||+.+.
T Consensus 59 ~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 59 DFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHcCCCCCCEEEEEECCEEEE
Confidence 4578899999999999 998874
No 97
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=81.57 E-value=1.2 Score=29.96 Aligned_cols=34 Identities=15% Similarity=0.014 Sum_probs=21.6
Q ss_pred hhcCCccccceEEE--CCE--EecCCCCCCCHHHHHHH
Q 031378 107 SATRGVYATPTFFV--NGF--SLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 107 a~~~GV~GTPTffI--NG~--~~~ga~s~~~~e~~~~~ 140 (160)
+...+|.++||+++ +|. ......+..+.+++.++
T Consensus 66 ~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~f 103 (104)
T cd02995 66 PSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKF 103 (104)
T ss_pred hhhccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhh
Confidence 55678899999998 665 12122345557766554
No 98
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=81.51 E-value=1.9 Score=39.24 Aligned_cols=40 Identities=8% Similarity=0.064 Sum_probs=31.1
Q ss_pred HHhhcCCccccceEE-E--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 105 KFSATRGVYATPTFF-V--NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 105 k~a~~~GV~GTPTff-I--NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
+.++.+||.|.||++ | ||+++....+..+.+++.++|+..
T Consensus 130 ~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 130 TLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 457889999999995 4 698875444566799999999843
No 99
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=81.16 E-value=3.2 Score=31.41 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=31.6
Q ss_pred HHhhcCCccccceEE-E--CCE-EecCCCC--------CCCHHHHHHHHHHHhhhcC
Q 031378 105 KFSATRGVYATPTFF-V--NGF-SLAGAGS--------PLDYNGWRKVIDPLLSEKG 149 (160)
Q Consensus 105 k~a~~~GV~GTPTff-I--NG~-~~~ga~s--------~~~~e~~~~~Id~~l~~~~ 149 (160)
..+...+|.+.||++ + ||. .+....+ ..+.+++.++++..+.+..
T Consensus 68 dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 68 DFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred HHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 458889999887666 4 888 5543222 3568899999999885443
No 100
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=81.13 E-value=2.3 Score=26.21 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=20.8
Q ss_pred hhcCCccccceEEECCEEecCCCCCCCHHHHHHH
Q 031378 107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~ 140 (160)
.+..|....|++++||..+.| ++++.++
T Consensus 43 ~~~~~~~~~P~~~~~~~~igg------~~~~~~~ 70 (72)
T cd02066 43 KELSGWPTVPQIFINGEFIGG------YDDLKAL 70 (72)
T ss_pred HHHhCCCCcCEEEECCEEEec------HHHHHHh
Confidence 344677999999999999854 5665554
No 101
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=80.97 E-value=2.7 Score=29.43 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=22.1
Q ss_pred hhcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378 107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I 141 (160)
.+..|...+|.+||||+.+-| ++++.++-
T Consensus 54 ~~~tg~~tvP~Vfi~g~~iGG------~ddl~~l~ 82 (99)
T TIGR02189 54 SRLGCSPAVPAVFVGGKLVGG------LENVMALH 82 (99)
T ss_pred HHhcCCCCcCeEEECCEEEcC------HHHHHHHH
Confidence 455689999999999999854 66666553
No 102
>PTZ00056 glutathione peroxidase; Provisional
Probab=80.82 E-value=1.9 Score=33.98 Aligned_cols=41 Identities=29% Similarity=0.226 Sum_probs=29.5
Q ss_pred eEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcCC----CCCcccc
Q 031378 117 TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK----KREVPLH 157 (160)
Q Consensus 117 TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~----~~~~~~~ 157 (160)
||+| ||+++.-..+..+.+++.+.|++++.+++- +|-+.||
T Consensus 148 tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~~~~~~~~~~~~~~ 194 (199)
T PTZ00056 148 KFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVKDYQELFKNYDKLH 194 (199)
T ss_pred EEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 7888 798764334456689999999999977654 4555555
No 103
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=79.97 E-value=2.3 Score=27.29 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=18.2
Q ss_pred CCcc-ccceEEECCEEecCCCCCCCHHHHHHH
Q 031378 110 RGVY-ATPTFFVNGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 110 ~GV~-GTPTffING~~~~ga~s~~~~e~~~~~ 140 (160)
.|.. ++|++||||+.+-| ++++.++
T Consensus 46 ~~~~~~vP~v~i~g~~igg------~~~~~~~ 71 (75)
T cd03418 46 SGGRRTVPQIFIGDVHIGG------CDDLYAL 71 (75)
T ss_pred hCCCCccCEEEECCEEEeC------hHHHHHH
Confidence 3545 89999999999854 5665554
No 104
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=79.52 E-value=1.7 Score=30.92 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=16.3
Q ss_pred HhhcCCccccc-eEEE--CCEEec
Q 031378 106 FSATRGVYATP-TFFV--NGFSLA 126 (160)
Q Consensus 106 ~a~~~GV~GTP-TffI--NG~~~~ 126 (160)
.++..||.++| +++| ||+++.
T Consensus 92 ~~~~~~v~~~P~~~~ld~~G~v~~ 115 (127)
T cd03010 92 VGIDLGVYGVPETFLIDGDGIIRY 115 (127)
T ss_pred HHHhcCCCCCCeEEEECCCceEEE
Confidence 56778999999 6666 688764
No 105
>PRK10329 glutaredoxin-like protein; Provisional
Probab=79.15 E-value=6 Score=26.59 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=26.3
Q ss_pred CCccccceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
.|..+.|++++||..+. +|..+.|.+++..-.
T Consensus 46 ~g~~~vPvv~i~~~~~~----Gf~~~~l~~~~~~~~ 77 (81)
T PRK10329 46 QGFRQLPVVIAGDLSWS----GFRPDMINRLHPAPH 77 (81)
T ss_pred cCCCCcCEEEECCEEEe----cCCHHHHHHHHHhhh
Confidence 48899999999998875 666899999887544
No 106
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=78.59 E-value=3 Score=28.43 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=20.5
Q ss_pred cCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378 109 TRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 109 ~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I 141 (160)
..|-...|++||||+.+-| .+++.++.
T Consensus 58 ~~g~~tvP~vfi~g~~iGG------~~~l~~l~ 84 (90)
T cd03028 58 YSNWPTFPQLYVNGELVGG------CDIVKEMH 84 (90)
T ss_pred HhCCCCCCEEEECCEEEeC------HHHHHHHH
Confidence 3477789999999998844 67766654
No 107
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=78.53 E-value=2.1 Score=32.56 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=21.6
Q ss_pred CCccccceEEE--CCEEecCCC-----------CCCCHHHHHHHHH
Q 031378 110 RGVYATPTFFV--NGFSLAGAG-----------SPLDYNGWRKVID 142 (160)
Q Consensus 110 ~GV~GTPTffI--NG~~~~ga~-----------s~~~~e~~~~~Id 142 (160)
+||.|+||+++ ||+.+.... ..|+.|+..+.++
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~~ 149 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPYYNDSKGRAVPFTFSKENVIRHFD 149 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEeccccCccccccccccHHHHHHhcc
Confidence 44455999988 898874222 3677777666543
No 108
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=78.22 E-value=3.3 Score=37.96 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHHhhcCCccccceEEE---CCEEec--CCCCCCCHHHHHHHHHHHh
Q 031378 104 FKFSATRGVYATPTFFV---NGFSLA--GAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI---NG~~~~--ga~s~~~~e~~~~~Id~~l 145 (160)
...++++||.|+||+++ ||+.++ -..+..+.+++.+.+++..
T Consensus 524 ~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 524 VALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 45678899999999998 687631 1223566899999888753
No 109
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=78.21 E-value=3.1 Score=30.82 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=27.6
Q ss_pred HhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 106 FSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 106 ~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
.-.+.|..+-|-.+|||+++. ...+.+.++|.+++.--....
T Consensus 64 ~L~~~G~e~LPitlVdGeiv~-~G~YPt~eEl~~~~~i~~~~~ 105 (123)
T PF06953_consen 64 LLQTEGAEALPITLVDGEIVK-TGRYPTNEELAEWLGISFSEL 105 (123)
T ss_dssp HHHHH-GGG-SEEEETTEEEE-ESS---HHHHHHHHT--GGGT
T ss_pred HHHHcCcccCCEEEECCEEEE-ecCCCCHHHHHHHhCCCcccc
Confidence 446789999999999999984 346888999998887665444
No 110
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=77.74 E-value=3.4 Score=26.68 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=20.0
Q ss_pred cCCccccceEEECCE-EecCCCCCCCHHHHHHH
Q 031378 109 TRGVYATPTFFVNGF-SLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 109 ~~GV~GTPTffING~-~~~ga~s~~~~e~~~~~ 140 (160)
..|..+.|++++||. .+. ++.-+.|.++
T Consensus 43 ~~g~~~vP~v~~~g~~~~~----G~~~~~~~~~ 71 (72)
T TIGR02194 43 AQGFRQVPVIVADGDLSWS----GFRPDKLKAL 71 (72)
T ss_pred HcCCcccCEEEECCCcEEe----ccCHHHHHhc
Confidence 358899999999886 443 4556777653
No 111
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=77.63 E-value=5.7 Score=29.85 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=32.4
Q ss_pred HHhhcCCccccceEEE---CCEEec-CC--------CCCCCHHHHHHHHHHHhhhcC
Q 031378 105 KFSATRGVYATPTFFV---NGFSLA-GA--------GSPLDYNGWRKVIDPLLSEKG 149 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG~~~~-ga--------~s~~~~e~~~~~Id~~l~~~~ 149 (160)
..++.+||.++|+.+| ||+.+- +. ....+.+++.+.|++++.++.
T Consensus 100 ~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 100 EVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 4567889999997777 787652 11 123456889999999998773
No 112
>PHA03050 glutaredoxin; Provisional
Probab=77.35 E-value=3.7 Score=29.33 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=19.6
Q ss_pred CCccccceEEECCEEecCCCCCCCHHHHHHH
Q 031378 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~ 140 (160)
.|-+..|++||||+.+-| ++++.++
T Consensus 65 tG~~tVP~IfI~g~~iGG------~ddl~~l 89 (108)
T PHA03050 65 TGGRTVPRIFFGKTSIGG------YSDLLEI 89 (108)
T ss_pred cCCCCcCEEEECCEEEeC------hHHHHHH
Confidence 467899999999999854 6776663
No 113
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=77.23 E-value=5.6 Score=29.27 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=35.4
Q ss_pred HhhcCCcc--ccceEEE----CCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCcccc
Q 031378 106 FSATRGVY--ATPTFFV----NGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPLH 157 (160)
Q Consensus 106 ~a~~~GV~--GTPTffI----NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~~~ 157 (160)
..+.+||. ++|++++ +| ++.-..+.++.+.+.++++..+.++-. ..|+|
T Consensus 71 ~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~--~~~~~ 125 (130)
T cd02983 71 LEEALNIGGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGP--TLPVN 125 (130)
T ss_pred HHHHcCCCccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCcc--cccCC
Confidence 35667885 5999998 23 443134578899999999999999854 55554
No 114
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=76.22 E-value=3.6 Score=28.63 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=20.8
Q ss_pred CCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id 142 (160)
.|....|.+||||+.+-| ++++.++.+
T Consensus 63 tg~~tvP~vfi~g~~iGG------~ddl~~l~~ 89 (97)
T TIGR00365 63 SNWPTIPQLYVKGEFVGG------CDIIMEMYQ 89 (97)
T ss_pred hCCCCCCEEEECCEEEeC------hHHHHHHHH
Confidence 467799999999998844 777776543
No 115
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=76.17 E-value=4.5 Score=39.78 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378 105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
+..+++||.|+||++| ||+++.-..+....+++.++|++++.
T Consensus 493 ~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred HHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 3457899999999998 78886433345568999999999974
No 116
>PRK10638 glutaredoxin 3; Provisional
Probab=76.12 E-value=4.4 Score=26.92 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=21.1
Q ss_pred hhcCCccccceEEECCEEecCCCCCCCHHHHHHH
Q 031378 107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~ 140 (160)
.+..|...+|++++||+.+-| ++++.++
T Consensus 45 ~~~~g~~~vP~i~~~g~~igG------~~~~~~~ 72 (83)
T PRK10638 45 IKRSGRTTVPQIFIDAQHIGG------CDDLYAL 72 (83)
T ss_pred HHHhCCCCcCEEEECCEEEeC------HHHHHHH
Confidence 345688899999999999854 5665554
No 117
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=75.68 E-value=1.4 Score=31.74 Aligned_cols=37 Identities=8% Similarity=0.059 Sum_probs=28.4
Q ss_pred cCCccc--cceEEE---CCEEec---CCCCCCCHHHHHHHHHHHh
Q 031378 109 TRGVYA--TPTFFV---NGFSLA---GAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 109 ~~GV~G--TPTffI---NG~~~~---ga~s~~~~e~~~~~Id~~l 145 (160)
..++.| +||+++ ||+.+. +..+++.++.|.+.|+...
T Consensus 69 ~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 69 EFSPDGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred hcccCCCccceEEEECCCCCCchhhccCCCCccccccCCCHHHHH
Confidence 556765 999999 788865 6677888888888877654
No 118
>smart00594 UAS UAS domain.
Probab=73.11 E-value=7 Score=28.04 Aligned_cols=38 Identities=5% Similarity=-0.050 Sum_probs=24.7
Q ss_pred HHHhhcCCccccceEEE---CC-E----EecCCCCCCCHHHHHHHH
Q 031378 104 FKFSATRGVYATPTFFV---NG-F----SLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI---NG-~----~~~ga~s~~~~e~~~~~I 141 (160)
.+.+.+++++|+|++.+ +| . .+.-..+..+.+++...+
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 56788899999999999 55 1 222222344577766554
No 119
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=71.76 E-value=8.4 Score=29.83 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=26.7
Q ss_pred HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378 106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
.++..||.++|+.|+ +|+.... ...-+.++++++++++..
T Consensus 138 i~~~y~v~~~P~~~lID~~G~I~~~-g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 138 IGMAFQVGKIPYGVLLDQDGKIRAK-GLTNTREHLESLLEADRE 180 (189)
T ss_pred HHHhccCCccceEEEECCCCeEEEc-cCCCCHHHHHHHHHHHHc
Confidence 467789999998766 6887532 122346777777776543
No 120
>PLN02412 probable glutathione peroxidase
Probab=70.87 E-value=6.5 Score=29.83 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=28.3
Q ss_pred CccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378 111 GVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSE 147 (160)
Q Consensus 111 GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~ 147 (160)
+|.++|+-|| +|+++.--.+..+.+++.+.|+++|.+
T Consensus 127 ~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 127 AIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 4788898555 798876445567789999999998864
No 121
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=70.50 E-value=3.5 Score=27.56 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=15.0
Q ss_pred HHhhcCCccccceEEE---CCE
Q 031378 105 KFSATRGVYATPTFFV---NGF 123 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG~ 123 (160)
...+..||.++|+++| ||+
T Consensus 73 ~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 73 ELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp HHHHHTT-TSSSEEEEEETTSB
T ss_pred HHHHHCCCCcCCEEEEECCCCC
Confidence 4578899999999999 665
No 122
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=70.38 E-value=9.1 Score=29.56 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=26.7
Q ss_pred HHhhcCCccccceEEE--CCEEec---CC----CCCCCHHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLA---GA----GSPLDYNGWRKVID 142 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~---ga----~s~~~~e~~~~~Id 142 (160)
..+.+++|.+.|||++ ||+.+. |. ...++.++++.++.
T Consensus 126 ~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 126 GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 4578899999999999 998763 22 12566666665553
No 123
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=70.34 E-value=5.6 Score=32.52 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=26.7
Q ss_pred hhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
+-+.||-++|++|++|..+-+ ..-+.++++.++..
T Consensus 52 ~~~~~V~SvP~Vf~DGel~~~--dpVdp~~ies~~~G 86 (265)
T COG5494 52 AFEKGVISVPSVFIDGELVYA--DPVDPEEIESILSG 86 (265)
T ss_pred HhhcceeecceEEEcCeEEEc--CCCCHHHHHHHHcC
Confidence 345799999999999999864 35668887666654
No 124
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=70.18 E-value=4.6 Score=28.79 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=17.6
Q ss_pred HHhhcCCccccceEEE---CCEEe
Q 031378 105 KFSATRGVYATPTFFV---NGFSL 125 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG~~~ 125 (160)
..++.+||.++|+++| ||+++
T Consensus 90 ~~~~~~~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 90 RLNRTFKIEGIPTLIILDADGEVV 113 (131)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEE
Confidence 4467899999999998 78876
No 125
>PTZ00102 disulphide isomerase; Provisional
Probab=69.45 E-value=5.8 Score=34.53 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=29.9
Q ss_pred hhcCCccccceEEE--CCEEec-CCCCCCCHHHHHHHHHHHhhh
Q 031378 107 SATRGVYATPTFFV--NGFSLA-GAGSPLDYNGWRKVIDPLLSE 147 (160)
Q Consensus 107 a~~~GV~GTPTffI--NG~~~~-ga~s~~~~e~~~~~Id~~l~~ 147 (160)
+.+.+|.|+||+++ +|...+ ...+..+.+++.++|++....
T Consensus 424 ~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 424 LEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred hhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 56789999999988 443321 223467799999999988753
No 126
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=69.43 E-value=6.5 Score=30.94 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=25.3
Q ss_pred hhcCCccccceEEE--CCEEec---CC----CCCCCHHHHHHHHH
Q 031378 107 SATRGVYATPTFFV--NGFSLA---GA----GSPLDYNGWRKVID 142 (160)
Q Consensus 107 a~~~GV~GTPTffI--NG~~~~---ga----~s~~~~e~~~~~Id 142 (160)
+..++|.+.|||++ ||+.+. |. ...++.+++..++.
T Consensus 145 ~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 145 IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 46899999999999 998764 22 12566666665553
No 127
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=69.09 E-value=7.1 Score=30.74 Aligned_cols=33 Identities=6% Similarity=-0.031 Sum_probs=21.9
Q ss_pred hhcCCccccceE--EE--CCEEecCCCCCCCHHHHHH
Q 031378 107 SATRGVYATPTF--FV--NGFSLAGAGSPLDYNGWRK 139 (160)
Q Consensus 107 a~~~GV~GTPTf--fI--NG~~~~ga~s~~~~e~~~~ 139 (160)
+..+||.|.|+. +| +|+...-..+..+.++|.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 458899999655 55 6886543333555777776
No 128
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=68.55 E-value=3.5 Score=29.81 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=23.9
Q ss_pred HHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHH
Q 031378 103 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRK 139 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~ 139 (160)
..+.+.+.||..+|++++ +|+.+-...+ +.+|.+
T Consensus 71 e~~L~~r~gv~~~PaLvf~R~g~~lG~i~g---i~dW~d 106 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFFRDGRYLGAIEG---IRDWAD 106 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEEETTEEEEEEES---SSTHHH
T ss_pred HHHHHHHhCCccCCeEEEEECCEEEEEecC---eecccc
Confidence 345578889999999998 9998733233 667765
No 129
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=67.79 E-value=13 Score=26.75 Aligned_cols=41 Identities=10% Similarity=0.149 Sum_probs=31.4
Q ss_pred HHHHhhcCCccccceEEE----CCEE-----ecCCCCCCCHHHHHHHHHHHhh
Q 031378 103 SFKFSATRGVYATPTFFV----NGFS-----LAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI----NG~~-----~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
..+.+..++++++|++.+ ++.. +.| ..+.+++...+.....
T Consensus 65 g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G---~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 65 GYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEG---LIQPEDLINRLTFIMD 114 (116)
T ss_pred HHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeC---CCCHHHHHHHHHHHHh
Confidence 377789999999999988 4442 456 5559999998887664
No 130
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=67.79 E-value=3.6 Score=29.19 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=22.9
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
..++++||.++||+++ +|.+. +. .+..++.....++++
T Consensus 69 ~~~~~~~i~~~Pt~~lf~~~~~~-~~-~~~~~~~~~~~~~~~ 108 (114)
T cd02992 69 ALCRDFGVTGYPTLRYFPPFSKE-AT-DGLKQEGPERDVNEL 108 (114)
T ss_pred HHHHhCCCCCCCEEEEECCCCcc-CC-CCCcccCCccCHHHH
Confidence 4578899999999999 55432 21 123344444444444
No 131
>PTZ00256 glutathione peroxidase; Provisional
Probab=67.13 E-value=8.1 Score=29.72 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=28.5
Q ss_pred cCCccccce----EEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378 109 TRGVYATPT----FFV--NGFSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 109 ~~GV~GTPT----ffI--NG~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
..++.+.|+ |+| +|+++.-..+..+.+++.+.|++++.
T Consensus 139 ~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 139 TNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred cccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 357889994 888 68876544456668889999998874
No 132
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=66.50 E-value=9.8 Score=29.93 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=30.5
Q ss_pred hhcCCc--cccceEEE---CCEEe-cCCCCCCCHHHHHHHHHHHhhhc
Q 031378 107 SATRGV--YATPTFFV---NGFSL-AGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 107 a~~~GV--~GTPTffI---NG~~~-~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
.+..|+ .++||.|+ ||+.. +-..+..+.++|.+.|+.++...
T Consensus 127 ~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~~ 174 (181)
T PRK13728 127 QTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQMY 174 (181)
T ss_pred HHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhhh
Confidence 345674 79999888 88763 33344666999999999998653
No 133
>PTZ00062 glutaredoxin; Provisional
Probab=65.71 E-value=9.6 Score=30.45 Aligned_cols=34 Identities=9% Similarity=-0.084 Sum_probs=24.7
Q ss_pred CCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 110 RGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 110 ~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
++|++.|||++ ||+.+. ...+.+..++...+...
T Consensus 58 ~~V~~vPtfv~~~~g~~i~-r~~G~~~~~~~~~~~~~ 93 (204)
T PTZ00062 58 DANNEYGVFEFYQNSQLIN-SLEGCNTSTLVSFIRGW 93 (204)
T ss_pred cCcccceEEEEEECCEEEe-eeeCCCHHHHHHHHHHH
Confidence 99999999999 999874 33344566666666543
No 134
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=65.04 E-value=5.3 Score=28.70 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=17.5
Q ss_pred HHhhcCCccccceEEE---CCEEec
Q 031378 105 KFSATRGVYATPTFFV---NGFSLA 126 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG~~~~ 126 (160)
..++.+||.|+||.+| ||+++.
T Consensus 90 ~~~~~~~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 90 LLEKQFKVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEc
Confidence 3467889999999997 687763
No 135
>PRK13669 hypothetical protein; Provisional
Probab=64.71 E-value=11 Score=25.83 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=24.9
Q ss_pred ccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 114 ATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 114 GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
-.|.-+|||+++.+. |.|++.+.|.+.+..+
T Consensus 45 ~~~FAlVng~~V~a~----t~eeL~~kI~~~i~e~ 75 (78)
T PRK13669 45 EGLFALVNGEVVEGE----TPEELVENIYAHLEEN 75 (78)
T ss_pred cCceEEECCeEeecC----CHHHHHHHHHHHHhhc
Confidence 469999999999753 3699999998888664
No 136
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=64.46 E-value=11 Score=25.74 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=25.1
Q ss_pred ccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 114 ATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 114 GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
-.|.-+|||+.+.+. |.|++.+.|.+.+..+
T Consensus 45 ~~pFAlVnG~~V~A~----t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 45 KKPFALVNGEIVAAE----TAEELLEKIKEKIEEN 75 (78)
T ss_pred CCccEEECCEEEecC----CHHHHHHHHHHHHhcc
Confidence 468899999999743 3699999999888765
No 137
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=64.41 E-value=6.5 Score=28.24 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=21.7
Q ss_pred Hh-hcCCccccceEEE--CCEEecCCCCCCCHHHHHH
Q 031378 106 FS-ATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRK 139 (160)
Q Consensus 106 ~a-~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~ 139 (160)
.+ ++.+|.|.||+.+ ||.......+..+.+++..
T Consensus 75 l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 75 KCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred HHHHhcCCcccCEEEEEECCccceEEeCCCCHHHHHh
Confidence 35 5789999999988 7763222223444666554
No 138
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=64.36 E-value=16 Score=26.11 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.1
Q ss_pred hcCCccccceEEECCEEec
Q 031378 108 ATRGVYATPTFFVNGFSLA 126 (160)
Q Consensus 108 ~~~GV~GTPTffING~~~~ 126 (160)
+--|-+..|.+||||+.+-
T Consensus 61 ~~tg~~tvP~vFI~Gk~iG 79 (104)
T KOG1752|consen 61 KLTGQRTVPNVFIGGKFIG 79 (104)
T ss_pred HhcCCCCCCEEEECCEEEc
Confidence 4455568999999999993
No 139
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=62.88 E-value=9.3 Score=24.14 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=19.7
Q ss_pred hcCCccccceEEE-CCEEecCCCCCCCHHHHHHHH
Q 031378 108 ATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 108 ~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~I 141 (160)
...|+.+.|++++ ||..+.. .+.+++.+.+
T Consensus 45 ~~~~~~~vP~i~~~~g~~l~~----~~~~~~~~~l 75 (77)
T TIGR02200 45 VNNGNMTVPTVKFADGSFLTN----PSAAQVKAKL 75 (77)
T ss_pred HhCCCceeCEEEECCCeEecC----CCHHHHHHHh
Confidence 3458999999988 6666643 2256665544
No 140
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=61.60 E-value=7.1 Score=25.83 Aligned_cols=22 Identities=32% Similarity=0.467 Sum_probs=17.2
Q ss_pred HHhhcCCccccceEEE---CCEEec
Q 031378 105 KFSATRGVYATPTFFV---NGFSLA 126 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG~~~~ 126 (160)
..++.+|+.++|+++| ||+.+.
T Consensus 88 ~~~~~~~~~~~P~~~l~d~~g~v~~ 112 (116)
T cd02966 88 ELAKAYGVRGLPTTFLIDRDGRIRA 112 (116)
T ss_pred hHHHhcCcCccceEEEECCCCcEEE
Confidence 4578899999999987 676653
No 141
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=60.09 E-value=12 Score=33.51 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=27.9
Q ss_pred HHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 105 k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
..+.+.+|.+.|++||||..+-. +..+.+++.+.+...
T Consensus 161 ~~~~~~~v~~VP~~~i~~~~~~~--g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 161 DEVEALGIQGVPAVFLNGEEFHN--GRMDLAELLEKLEET 198 (515)
T ss_pred HHHHhcCCcccCEEEECCcEEEe--cCCCHHHHHHHHhhc
Confidence 45788999999999999987532 234478776666654
No 142
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=60.08 E-value=12 Score=33.51 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=27.1
Q ss_pred HHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 104 FKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
-..+.+.+|.+.|++||||..+-. +..+.+++.+.+..
T Consensus 159 ~~~~~~~~v~~VP~~~i~~~~~~~--g~~~~~~~~~~~~~ 196 (517)
T PRK15317 159 QDEVEARNIMAVPTVFLNGEEFGQ--GRMTLEEILAKLDT 196 (517)
T ss_pred HhHHHhcCCcccCEEEECCcEEEe--cCCCHHHHHHHHhc
Confidence 345778999999999999987532 23347777666654
No 143
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=58.98 E-value=10 Score=34.38 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=33.2
Q ss_pred HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
..++.+.+|.|.||+-| ||.......+..+.+...+.+.+...+.
T Consensus 89 ~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 89 SDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPA 135 (493)
T ss_pred hhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCC
Confidence 56799999999999988 8986334445666888877777665433
No 144
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=56.68 E-value=11 Score=25.90 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=15.9
Q ss_pred HhhcCCccccceEEE---CCEEe
Q 031378 106 FSATRGVYATPTFFV---NGFSL 125 (160)
Q Consensus 106 ~a~~~GV~GTPTffI---NG~~~ 125 (160)
.++.+||.++|+.+| +|++.
T Consensus 87 ~~~~~~~~~~P~~~vid~~G~v~ 109 (114)
T cd02967 87 LGMAYQVSKLPYAVLLDEAGVIA 109 (114)
T ss_pred HHhhcCCCCcCeEEEECCCCeEE
Confidence 367889999999777 68765
No 145
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=56.21 E-value=9.1 Score=27.16 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=15.9
Q ss_pred hhcCCccccceEEE---CCEEec
Q 031378 107 SATRGVYATPTFFV---NGFSLA 126 (160)
Q Consensus 107 a~~~GV~GTPTffI---NG~~~~ 126 (160)
++..||.++|+.+| ||+.+.
T Consensus 98 ~~~~~v~~~P~~~vid~~G~v~~ 120 (126)
T cd03012 98 WRAYGNQYWPALYLIDPTGNVRH 120 (126)
T ss_pred HHHhCCCcCCeEEEECCCCcEEE
Confidence 56789999999998 677653
No 146
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=55.35 E-value=25 Score=29.19 Aligned_cols=46 Identities=13% Similarity=0.045 Sum_probs=34.3
Q ss_pred HHHHhhcCCccccceEEE---C-CEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 103 SFKFSATRGVYATPTFFV---N-GFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI---N-G~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
+-..+.++||.-||+.|+ | ++..+-+.|-.+.+++.+-|......=
T Consensus 202 d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 202 DSGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred ChHHHHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 444578999999999998 3 666665556666888888887776543
No 147
>PF13728 TraF: F plasmid transfer operon protein
Probab=54.52 E-value=15 Score=29.45 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=25.5
Q ss_pred HHHHhhcCCccccceEEE---CC-EEecCCCCCCCHHHHHH
Q 031378 103 SFKFSATRGVYATPTFFV---NG-FSLAGAGSPLDYNGWRK 139 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI---NG-~~~~ga~s~~~~e~~~~ 139 (160)
+-..++++||.-||++|+ |+ +..+-+.|-.+.+++.+
T Consensus 172 ~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 172 DPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELED 212 (215)
T ss_pred CHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHH
Confidence 344577899999999999 44 66665555444666554
No 148
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=53.86 E-value=18 Score=26.63 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=24.0
Q ss_pred cccc-----eEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 113 YATP-----TFFV--NGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 113 ~GTP-----TffI--NG~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
.+.| ||+| +|++..-..+..+.+++.+.|++++
T Consensus 114 ~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 114 KKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 4689 6888 6887654455666888888887654
No 149
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=53.78 E-value=17 Score=29.65 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=26.5
Q ss_pred ccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378 112 VYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 112 V~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
|.+.|+.|| +|+++.-..+..+.+++++.|+++|+
T Consensus 198 i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 198 IKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 456676666 89887655556678999999999885
No 150
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=53.31 E-value=19 Score=29.68 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=34.2
Q ss_pred HHHHhhcCCccccceEEE----CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 103 SFKFSATRGVYATPTFFV----NGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI----NG~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
+...+.++||.-||+.|+ +++..+-+.|-.+.+++.+-|.....+.
T Consensus 195 d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 195 DQGQAQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred ChhHHHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 344457899999999998 4666665555666999988888876554
No 151
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=52.47 E-value=13 Score=26.77 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=16.6
Q ss_pred HHhhcCCcc---------ccceEEE---CCEEec
Q 031378 105 KFSATRGVY---------ATPTFFV---NGFSLA 126 (160)
Q Consensus 105 k~a~~~GV~---------GTPTffI---NG~~~~ 126 (160)
..++++|+. ++|+++| ||+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~ 129 (146)
T PF08534_consen 96 ALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVY 129 (146)
T ss_dssp HHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEE
T ss_pred HHHHHhCCccccccccCCeecEEEEEECCCEEEE
Confidence 346677877 9999877 888764
No 152
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=51.29 E-value=14 Score=25.58 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=10.6
Q ss_pred cCCccccceEEE
Q 031378 109 TRGVYATPTFFV 120 (160)
Q Consensus 109 ~~GV~GTPTffI 120 (160)
..||.++||+++
T Consensus 73 ~~~v~~~Pti~~ 84 (109)
T cd02993 73 ELQLKSFPTILF 84 (109)
T ss_pred hcCCCcCCEEEE
Confidence 489999999986
No 153
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=50.33 E-value=29 Score=24.72 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=24.0
Q ss_pred cceEEECCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCccc
Q 031378 115 TPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPL 156 (160)
Q Consensus 115 TPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~~ 156 (160)
.=.+||||+++.. ..+.++|.++......++..|.
T Consensus 41 ~q~ifVN~R~V~~-------~~l~~~I~~~y~~~~~~~~~P~ 75 (119)
T PF01119_consen 41 RQFIFVNGRPVEN-------KALSKAINEAYRERLPKGRYPI 75 (119)
T ss_dssp CEEEEETTEEE---------HHHHHHHHHHHHCTTCTTSB-E
T ss_pred cEEEEeCCCeEeC-------hHHHHHHHHHHhhcccCCCCce
Confidence 3468889999973 5889999988875555556664
No 154
>PRK10824 glutaredoxin-4; Provisional
Probab=49.53 E-value=22 Score=25.84 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.5
Q ss_pred CCccccceEEECCEEecC
Q 031378 110 RGVYATPTFFVNGFSLAG 127 (160)
Q Consensus 110 ~GV~GTPTffING~~~~g 127 (160)
.|-.-.|.+||||+.+-|
T Consensus 66 sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 66 ANWPTFPQLWVDGELVGG 83 (115)
T ss_pred hCCCCCCeEEECCEEEcC
Confidence 477899999999999944
No 155
>PRK15320 transcriptional activator SprB; Provisional
Probab=48.94 E-value=22 Score=29.03 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=46.0
Q ss_pred chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEec
Q 031378 50 QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLA 126 (160)
Q Consensus 50 ~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ 126 (160)
+|-+||+.+-. +|.-++ .+....++ |.++ .++.+.|......-.++ -.+.-.++|+..+|--..-|.+++
T Consensus 154 ~~~~~~~~~~~-LSdREI--EVL~LLAk--G~SN-KEIAekL~LS~KTVSTY-KnRLLeKLgAkN~~~~~~~~~~~~ 223 (251)
T PRK15320 154 NQYAWWNLPPG-VTQAKY--ALLILLSS--GHPA-IELAKKFGLGTKTVSIY-RKKVMYRLGMDSSPLSLFRGLKLD 223 (251)
T ss_pred cceeeecCCCC-CCHHHH--HHHHHHHc--CCCH-HHHHHHhccchhhHHHH-HHHHHHHcCCCCCchHHHcccchh
Confidence 89999998643 344332 45666655 9985 78877775433222221 123458999999999888887764
No 156
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=48.79 E-value=18 Score=27.30 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=18.7
Q ss_pred HHhhcCCccccceEEE---CCEEec
Q 031378 105 KFSATRGVYATPTFFV---NGFSLA 126 (160)
Q Consensus 105 k~a~~~GV~GTPTffI---NG~~~~ 126 (160)
..++..||.|.||.++ ||+.+.
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEe
Confidence 4578899999999999 888874
No 157
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=48.66 E-value=55 Score=27.14 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhcCC-ccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCccc
Q 031378 98 LLTRVSFKFSATRG-VYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPL 156 (160)
Q Consensus 98 ~~i~~~~k~a~~~G-V~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~~ 156 (160)
+.++...++....| |+| ++++|.. |.....+.|+..++++...... ..+.|+
T Consensus 21 ~~~~~~i~~~i~~G~v~g---i~~~Gst--GE~~~Lt~eEr~~~~~~~~~~~--~~~~pv 73 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDG---LYVGGST--GENFMLSTEEKKEIFRIAKDEA--KDQIAL 73 (290)
T ss_pred HHHHHHHHHHHhCCCcCE---EEECCcc--cccccCCHHHHHHHHHHHHHHh--CCCCcE
Confidence 34555666667788 887 8899884 5556888999999999888765 335554
No 158
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=48.02 E-value=22 Score=23.72 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=19.6
Q ss_pred cceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 115 TPTFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 115 TPTffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
-|.+.|||+.+.+ .+.+++.+++++
T Consensus 55 gP~~~v~~~~~~~----~~~e~i~~il~~ 79 (80)
T cd03081 55 SPAAMIDGEVHGR----VDPEKFDALLAE 79 (80)
T ss_pred CCEEEECCEEECC----CCHHHHHHHHHc
Confidence 4999999999864 346888888765
No 159
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=47.47 E-value=14 Score=32.40 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=17.0
Q ss_pred hcCCccccceEEECCEEecC
Q 031378 108 ATRGVYATPTFFVNGFSLAG 127 (160)
Q Consensus 108 ~~~GV~GTPTffING~~~~g 127 (160)
+..|.+++|++||||+.+-|
T Consensus 54 ~~~g~~tvP~ifi~~~~igG 73 (410)
T PRK12759 54 VEEHIRTVPQIFVGDVHIGG 73 (410)
T ss_pred ccCCCCccCeEEECCEEEeC
Confidence 44788999999999998855
No 160
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.23 E-value=14 Score=32.72 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=28.9
Q ss_pred hhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
....+|.+.||+|+||..+- ++.-++|++.+.|+.
T Consensus 162 vear~IMaVPtvflnGe~fg--~GRmtleeilaki~~ 196 (520)
T COG3634 162 VEARNIMAVPTVFLNGEEFG--QGRMTLEEILAKIDT 196 (520)
T ss_pred HHhccceecceEEEcchhhc--ccceeHHHHHHHhcC
Confidence 46789999999999999873 357778888888876
No 161
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=43.38 E-value=20 Score=25.39 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=21.4
Q ss_pred HHhhcCCcccc---------ceEEE---CCEEecCCCCCCCHHHHHHHH
Q 031378 105 KFSATRGVYAT---------PTFFV---NGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 105 k~a~~~GV~GT---------PTffI---NG~~~~ga~s~~~~e~~~~~I 141 (160)
+.++.+||.++ |+.+| ||+......+...-+.+.+.+
T Consensus 91 ~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 91 KLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 34677888887 76655 687764333333344444443
No 162
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=42.52 E-value=42 Score=22.23 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.6
Q ss_pred eEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 117 TFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 117 TffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
.|..||..+.+..+.|+.++.+++-..
T Consensus 8 vF~~~gi~L~DP~p~~spe~V~dfYs~ 34 (66)
T TIGR03738 8 VFTYNGVRLADPSPAMSPEQVRDFYSA 34 (66)
T ss_pred EEEECCeEcCCCCCCCCHHHHHHHHhc
Confidence 577799999998899999998887653
No 163
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=42.42 E-value=72 Score=25.87 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 99 LTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 99 ~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
.++...++..+.||+| ++++|.. |....++.++..++++...+..
T Consensus 19 ~~~~~i~~l~~~Gv~g---i~~~Gst--GE~~~ls~~Er~~l~~~~~~~~ 63 (281)
T cd00408 19 ALRRLVEFLIEAGVDG---LVVLGTT--GEAPTLTDEERKEVIEAVVEAV 63 (281)
T ss_pred HHHHHHHHHHHcCCCE---EEECCCC--cccccCCHHHHHHHHHHHHHHh
Confidence 4555566666678888 7888874 5556888999999999887665
No 164
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=42.29 E-value=37 Score=22.30 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=18.4
Q ss_pred cceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378 115 TPTFFVNGFSLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 115 TPTffING~~~~ga~s~~~~e~~~~~Id 142 (160)
-|++.|||+.+. ..+.+.+.++++
T Consensus 47 gP~v~V~~~~~~----~~t~~~i~~~~~ 70 (72)
T cd03082 47 APAALVGQRPVD----GATPAAVAAAVE 70 (72)
T ss_pred CCeEEECCEEeC----CcCHHHHHHHHh
Confidence 499999999985 445788777665
No 165
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=41.45 E-value=39 Score=23.91 Aligned_cols=43 Identities=12% Similarity=0.022 Sum_probs=31.2
Q ss_pred HhhcCCccc--cceEEE----CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 106 FSATRGVYA--TPTFFV----NGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 106 ~a~~~GV~G--TPTffI----NG~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
....+|+++ .|.+.| ++.++.-..+.++.+.+.+++...+.++
T Consensus 63 ~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 63 PLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred HHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 356788888 899999 2345541334677899999999888764
No 166
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=41.19 E-value=40 Score=25.49 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.5
Q ss_pred ccccceEEECCEEecCCCCCCCHHHHHHH
Q 031378 112 VYATPTFFVNGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 112 V~GTPTffING~~~~ga~s~~~~e~~~~~ 140 (160)
-...|.+||||+.+-| .+++.++
T Consensus 58 ~~tvPqVFI~G~~IGG------~del~~L 80 (147)
T cd03031 58 AVSLPRVFVDGRYLGG------AEEVLRL 80 (147)
T ss_pred CCCCCEEEECCEEEec------HHHHHHH
Confidence 3689999999999854 5665554
No 167
>PTZ00062 glutaredoxin; Provisional
Probab=40.33 E-value=34 Score=27.29 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=19.4
Q ss_pred CCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~I 141 (160)
.|-..+|.+||||+.+-| .+++.++.
T Consensus 164 sg~~TvPqVfI~G~~IGG------~d~l~~l~ 189 (204)
T PTZ00062 164 SNWPTYPQLYVNGELIGG------HDIIKELY 189 (204)
T ss_pred hCCCCCCeEEECCEEEcC------hHHHHHHH
Confidence 466788999999999844 56666554
No 168
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=39.18 E-value=50 Score=28.32 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=31.8
Q ss_pred HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378 104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE 147 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~ 147 (160)
-..+.+.||.|+||+.+ +|...-+..+..+.+.+.+.....+..
T Consensus 91 ~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 91 KDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred HHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHHHHHHHHhhcc
Confidence 44578999999999999 663233444566688888888877743
No 169
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=38.86 E-value=58 Score=23.78 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=19.6
Q ss_pred HHHhhcCCccccceEEECCEEec
Q 031378 104 FKFSATRGVYATPTFFVNGFSLA 126 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffING~~~~ 126 (160)
...|.++||+-.|.+++|++.+.
T Consensus 73 v~~Aw~lgi~k~PAVVfD~~~VV 95 (114)
T PF07511_consen 73 VVDAWSLGITKYPAVVFDDRYVV 95 (114)
T ss_pred HHHHHHhCccccCEEEEcCCeEE
Confidence 34689999999999999988763
No 170
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=38.48 E-value=1.2e+02 Score=22.13 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=19.5
Q ss_pred HHHhhcCCccccceEEECCEEec
Q 031378 104 FKFSATRGVYATPTFFVNGFSLA 126 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffING~~~~ 126 (160)
...|.++||+-.|.+++|+..+.
T Consensus 74 v~~Aw~lGi~k~PAVV~D~~~VV 96 (113)
T TIGR03757 74 VADAWQLGVTKIPAVVVDRRYVV 96 (113)
T ss_pred HHHHHHcCCccCCEEEEcCCeEE
Confidence 34678999999999999988763
No 171
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=38.04 E-value=37 Score=26.26 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=24.5
Q ss_pred ccceEEECCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378 114 ATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE 147 (160)
Q Consensus 114 GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~ 147 (160)
.-|.+.|||..+. ..|.|.+.++|++..++
T Consensus 130 ~AP~vmind~~~~----~lt~e~l~eil~~~~~~ 159 (160)
T COG1905 130 QAPVVMINDDVYG----RLTPEKLEEILEKLKAK 159 (160)
T ss_pred cCCEEEECCchhc----cCCHHHHHHHHHHHhcC
Confidence 3599999999984 46689999999988654
No 172
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=37.60 E-value=59 Score=21.40 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.8
Q ss_pred eEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 117 TFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 117 TffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
.|..||+.+++..+.++.++.+++-..
T Consensus 9 ~F~~~g~~L~DP~p~~spe~V~~~ya~ 35 (65)
T PF14454_consen 9 VFRYNGITLPDPNPSLSPEEVRDFYAA 35 (65)
T ss_pred EEEECCEECCCCCCCCCHHHHHHHHhh
Confidence 567799999998899999998887654
No 173
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=37.03 E-value=53 Score=26.89 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=32.4
Q ss_pred HHHHcccCChhHHHHHHHHHHHh-hcCCccccceEEEC--CEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378 85 SALESGFSDRSTDLLTRVSFKFS-ATRGVYATPTFFVN--GFSLAGAGSPLDYNGWRKVIDPLLSE 147 (160)
Q Consensus 85 ~~f~~~l~~~~~~~~i~~~~k~a-~~~GV~GTPTffIN--G~~~~ga~s~~~~e~~~~~Id~~l~~ 147 (160)
..|.-+..++. .++..++.. +.+| ||+++|| |+.-++..=....++|.+.|.--|.+
T Consensus 65 ~aF~~DVS~a~---~v~~~l~e~~k~~g---~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~g 124 (256)
T KOG1200|consen 65 SAFSCDVSKAH---DVQNTLEEMEKSLG---TPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTG 124 (256)
T ss_pred ceeeeccCcHH---HHHHHHHHHHHhcC---CCcEEEEcCccccccceeeccHHHHHHHHHhhchh
Confidence 44544444433 233334433 5555 9999997 44332222234489999999866643
No 174
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=36.60 E-value=22 Score=19.95 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=13.7
Q ss_pred hhcCCccccceEEECC
Q 031378 107 SATRGVYATPTFFVNG 122 (160)
Q Consensus 107 a~~~GV~GTPTffING 122 (160)
....++.++|++++.+
T Consensus 46 ~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 46 LKRYGVGGVPTLVVFG 61 (69)
T ss_pred HHhCCCccccEEEEEe
Confidence 5778999999999955
No 175
>COG2323 Predicted membrane protein [Function unknown]
Probab=35.47 E-value=31 Score=28.13 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=22.7
Q ss_pred ccccceEEE-CCEEecCC--CCCCCHHHHHHHHHH
Q 031378 112 VYATPTFFV-NGFSLAGA--GSPLDYNGWRKVIDP 143 (160)
Q Consensus 112 V~GTPTffI-NG~~~~ga--~s~~~~e~~~~~Id~ 143 (160)
++|+|+.+| ||+..... .+..|.+++.-.+++
T Consensus 90 l~G~P~vlI~nGki~e~~Lkk~rlt~ddL~~~LR~ 124 (224)
T COG2323 90 LEGKPTVLIENGKIDEENLKKSRLTIDDLLMKLRQ 124 (224)
T ss_pred hcCCCEEEEeCCeEcHHHHHHhcCCHHHHHHHHHH
Confidence 689999999 89987532 336667776655553
No 176
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=35.21 E-value=42 Score=27.84 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=31.6
Q ss_pred cccCChhHHHHHHHHHHHhhcCCccc--cceEEECCEEecCCCCCCCHHHHHHHHHHH
Q 031378 89 SGFSDRSTDLLTRVSFKFSATRGVYA--TPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 89 ~~l~~~~~~~~i~~~~k~a~~~GV~G--TPTffING~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
.-|.+.+..++ ...|++.+|-+| ||..+|||..... ..+..++...|+..
T Consensus 89 Dtlar~enTeR---Q~aY~~a~g~~~vyTPQavvnGr~~~~---Gad~~~i~~~i~a~ 140 (261)
T COG5429 89 DTLARKENTER---QRAYARAFGARGVYTPQAVVNGRVHAN---GADPGAIEDAIAAM 140 (261)
T ss_pred ccccchhhhHH---HHHHHHhhccCCCCCchheeechhhhc---CCCHHHHHHHHHHh
Confidence 33445444433 355666666665 8999999998754 34467777776654
No 177
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=34.89 E-value=1.2e+02 Score=24.95 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcC-CccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 99 LTRVSFKFSATR-GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 99 ~i~~~~k~a~~~-GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
.++...++..+. ||+| ++++|.. |.....+.++..++++..+...
T Consensus 22 ~~~~~i~~l~~~~Gv~g---i~~~Gst--GE~~~Lt~~Er~~~~~~~~~~~ 67 (288)
T cd00954 22 VLRAIVDYLIEKQGVDG---LYVNGST--GEGFLLSVEERKQIAEIVAEAA 67 (288)
T ss_pred HHHHHHHHHHhcCCCCE---EEECcCC--cCcccCCHHHHHHHHHHHHHHh
Confidence 444455556556 8877 8888874 5557888999999999888665
No 178
>PF11551 Omp28: Outer membrane protein Omp28; InterPro: IPR021615 Omp28 is a 28kDa outer membrane protein from Porphyromonas gingivalis. Omp28 is thought to be a surface adhesion/receptor protein. Omp28 is expressed in a wide distribution of P.gingivalis strains []. ; PDB: 2R2C_A.
Probab=34.83 E-value=13 Score=29.10 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=1.2
Q ss_pred HHHhhcCCccccceEEECCEEecCCC--CCCCHHHHHHHHHHHh
Q 031378 104 FKFSATRGVYATPTFFVNGFSLAGAG--SPLDYNGWRKVIDPLL 145 (160)
Q Consensus 104 ~k~a~~~GV~GTPTffING~~~~ga~--s~~~~e~~~~~Id~~l 145 (160)
-.+.+.+||+|.|+++||-+.. +.. ...+...|...|.+.+
T Consensus 9 ~~~~~~~~v~g~P~~~vNR~~~-~~~~~~~~~~~~~~~~i~~~~ 51 (184)
T PF11551_consen 9 SALMKQWGVSGYPSAMVNRKGG-WLSKNYSATKTAWNKSIAEEL 51 (184)
T ss_dssp -------------------------------EE-B---------
T ss_pred hcccccccCCCCCeEEEECCCc-cccccccccccchhHHHHHHh
Confidence 3467899999999999994422 211 1222345555555433
No 179
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=34.36 E-value=57 Score=29.39 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=26.1
Q ss_pred hcCCccccceEEE--CCE----EecCCCCCCCHHHHHHHHHHH
Q 031378 108 ATRGVYATPTFFV--NGF----SLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 108 ~~~GV~GTPTffI--NG~----~~~ga~s~~~~e~~~~~Id~~ 144 (160)
.+++|.+.||+++ ||. .+++ +..+.+.+.++|+.+
T Consensus 422 ~~~~I~~~PTii~Fk~g~~~~~~Y~~--g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 422 QELQLGSFPTILFFPKHSSRPIKYPS--EKRDVDSLMSFVNLL 462 (463)
T ss_pred HHcCCCccceEEEEECCCCCceeCCC--CCCCHHHHHHHHHhh
Confidence 5789999999998 663 3332 256799999988765
No 180
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=34.27 E-value=50 Score=30.72 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHhhcCCccccceEEE------C---CEEecCCCCCCCHHHHHHHHHHHh
Q 031378 102 VSFKFSATRGVYATPTFFV------N---GFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 102 ~~~k~a~~~GV~GTPTffI------N---G~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
.+.+.+|..+|++|||+.. | |..+.+... -.+..+.+...+
T Consensus 104 ~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~---~~ei~~~l~~~l 153 (606)
T KOG1731|consen 104 ENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVI---PSEIRDQLIRTL 153 (606)
T ss_pred hhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcc---hhhHHHHHHHHH
Confidence 3567799999999999988 3 666655332 444444444443
No 181
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=32.11 E-value=70 Score=23.04 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=23.2
Q ss_pred ceEEECCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCcccc
Q 031378 116 PTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPLH 157 (160)
Q Consensus 116 PTffING~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~~~ 157 (160)
-.+||||+++.. ..+.+.|..+-..-..+...|..
T Consensus 46 q~ifVN~R~V~~-------~~l~~ai~~~y~~~~~~~~~P~~ 80 (123)
T cd03482 46 QYFYVNGRMVRD-------KLISHAVRQAYSDVLHGGRHPAY 80 (123)
T ss_pred EEEEEcCcEECC-------hHHHHHHHHHHHHhccCCCCcEE
Confidence 368999999963 56777777776554334555543
No 182
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=32.05 E-value=1.1e+02 Score=22.88 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=23.3
Q ss_pred hhcCCcc------ccceEEE---CCEEecCC----CCCCCHHHHHHHHHHHhhhc
Q 031378 107 SATRGVY------ATPTFFV---NGFSLAGA----GSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 107 a~~~GV~------GTPTffI---NG~~~~ga----~s~~~~e~~~~~Id~~l~~~ 148 (160)
++++||. +.|+.|| ||+...-. ....+.+++.+.|+.+....
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~~ 160 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVE 160 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhh
Confidence 4556665 3455555 68765322 11335777888887664333
No 183
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=31.96 E-value=69 Score=23.22 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=22.3
Q ss_pred eEEECCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCccc
Q 031378 117 TFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPL 156 (160)
Q Consensus 117 TffING~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~~ 156 (160)
.+||||+++.. ..+.+.|..+-..--.++..|.
T Consensus 51 ~~fVNgR~V~~-------~~l~~aI~~~Y~~~l~~~~~P~ 83 (127)
T cd03483 51 ILFINNRLVEC-------SALRRAIENVYANYLPKGAHPF 83 (127)
T ss_pred EEEEcCCEecC-------HHHHHHHHHHHHHhCcCCCccE
Confidence 58999999963 5677777777655433445554
No 184
>PLN02309 5'-adenylylsulfate reductase
Probab=31.80 E-value=67 Score=28.87 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=26.3
Q ss_pred Hhh-cCCccccceEEE--CCEEe-cCCC-CCCCHHHHHHHHHHH
Q 031378 106 FSA-TRGVYATPTFFV--NGFSL-AGAG-SPLDYNGWRKVIDPL 144 (160)
Q Consensus 106 ~a~-~~GV~GTPTffI--NG~~~-~ga~-s~~~~e~~~~~Id~~ 144 (160)
.+. +++|.++||+++ +|... .... +..+.+.+.++|+++
T Consensus 413 la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 413 FAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred HHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 353 589999999998 44321 1121 246789999998875
No 185
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=31.75 E-value=42 Score=24.46 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=26.6
Q ss_pred HHhhcCCccccceEEE--CCEEecCCCCC----------CCHHHHHHHHHHH
Q 031378 105 KFSATRGVYATPTFFV--NGFSLAGAGSP----------LDYNGWRKVIDPL 144 (160)
Q Consensus 105 k~a~~~GV~GTPTffI--NG~~~~ga~s~----------~~~e~~~~~Id~~ 144 (160)
..++..||++-|||+. ||+.+.-..|+ -+-+++.++|+..
T Consensus 59 dva~~y~I~amPtfvffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 59 VYTQYFDISYIPSTIFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred HHHHhcCceeCcEEEEEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 3588999999999988 88776421111 1246677777654
No 186
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=31.38 E-value=99 Score=26.38 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=32.1
Q ss_pred HHhhcCCcc--ccceEEE---CC-EEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378 105 KFSATRGVY--ATPTFFV---NG-FSLAGAGSPLDYNGWRKVIDPLLSEKGK 150 (160)
Q Consensus 105 k~a~~~GV~--GTPTffI---NG-~~~~ga~s~~~~e~~~~~Id~~l~~~~~ 150 (160)
...+.+|++ ++|+++| +| ..+.-..+..+.+.+.++|+..+.++-+
T Consensus 281 ~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~ 332 (462)
T TIGR01130 281 RELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLK 332 (462)
T ss_pred HHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCC
Confidence 356678888 6999999 34 2232222257789999999999876644
No 187
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=30.93 E-value=1.6e+02 Score=24.33 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 99 LTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 99 ~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
.++...++..+.||+| ++++|.. |....++.++..++++..++..
T Consensus 22 ~l~~l~~~l~~~Gv~g---i~v~Gst--GE~~~Ls~eEr~~l~~~~~~~~ 66 (289)
T cd00951 22 AYRAHVEWLLSYGAAA---LFAAGGT--GEFFSLTPDEYAQVVRAAVEET 66 (289)
T ss_pred HHHHHHHHHHHcCCCE---EEECcCC--cCcccCCHHHHHHHHHHHHHHh
Confidence 3444555555666665 6788873 5556888999999998887665
No 188
>PRK06246 fumarate hydratase; Provisional
Probab=30.75 E-value=2.4e+02 Score=23.76 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhcCCc-----cccceEEE
Q 031378 96 TDLLTRVSFKFSATRGV-----YATPTFFV 120 (160)
Q Consensus 96 ~~~~i~~~~k~a~~~GV-----~GTPTffI 120 (160)
.-..+..+.+.|++.+. +|+|+||+
T Consensus 47 ~l~~ileN~~iA~~~~~P~CQDTG~~~~fv 76 (280)
T PRK06246 47 ILKAILENAEIAKEEQVPLCQDTGMAVVFV 76 (280)
T ss_pred HHHHHHHHHHHHhcCCCccccCCCcEEEEE
Confidence 33456667777877766 79999998
No 189
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=30.02 E-value=1.2e+02 Score=20.84 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=19.5
Q ss_pred CCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 141 (160)
Q Consensus 110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~I 141 (160)
.|-..-|.+||||..+ | + ++++.++-
T Consensus 56 ~g~~tvPQIFi~~~~i-G--g---~ddl~~l~ 81 (92)
T cd03030 56 NGKPLPPQIFNGDEYC-G--D---YEAFFEAK 81 (92)
T ss_pred CCCCCCCEEEECCEEe-e--C---HHHHHHHH
Confidence 4667779999999988 4 3 67776654
No 190
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=29.96 E-value=1.7e+02 Score=24.25 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCccc
Q 031378 99 LTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPL 156 (160)
Q Consensus 99 ~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~~ 156 (160)
.++...++..+.||+| ++++|.. |.....|.++.+++++...+.. +.+.|+
T Consensus 27 ~l~~li~~l~~~Gv~g---i~v~Gst--GE~~~Lt~eEr~~v~~~~~~~~--~g~~pv 77 (296)
T TIGR03249 27 AYRENIEWLLGYGLEA---LFAAGGT--GEFFSLTPAEYEQVVEIAVSTA--KGKVPV 77 (296)
T ss_pred HHHHHHHHHHhcCCCE---EEECCCC--cCcccCCHHHHHHHHHHHHHHh--CCCCcE
Confidence 4455555566677776 6788874 5556888999999999887665 334543
No 191
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=29.16 E-value=66 Score=23.95 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=20.8
Q ss_pred cceEEECCEEecCCCCCCCHHHHHHHHHHH
Q 031378 115 TPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 115 TPTffING~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
-|.+.|||+.+.. .+.+.+.++|+++
T Consensus 119 aP~v~V~~~~y~~----vt~e~v~~il~~l 144 (145)
T PF01257_consen 119 APVVMVDGEWYGN----VTPEKVDEILEEL 144 (145)
T ss_dssp SSEEEECCCEEES----SSCCHHHHHHHHH
T ss_pred CCEEEECCEEECC----CCHHHHHHHHHhc
Confidence 5999999998864 3458888888765
No 192
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=28.12 E-value=71 Score=20.90 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=19.5
Q ss_pred ccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 114 ATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 114 GTPTffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
-=|.+.|||+.+.. .+.++..+++++
T Consensus 54 ~gP~v~v~g~~y~~----vt~~~i~~i~~~ 79 (80)
T cd03064 54 LAPVMMINDDVYGR----LTPEKVDAILEA 79 (80)
T ss_pred CCCEEEECCEEECC----CCHHHHHHHHHh
Confidence 34899999998854 346888888765
No 193
>smart00305 HintC Hint (Hedgehog/Intein) domain C-terminal region. Hedgehog/Intein domain, C-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=28.01 E-value=50 Score=19.50 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.5
Q ss_pred cCCccccceEEECCEEecC
Q 031378 109 TRGVYATPTFFVNGFSLAG 127 (160)
Q Consensus 109 ~~GV~GTPTffING~~~~g 127 (160)
...|.++.+|++||.....
T Consensus 22 d~~v~~~~~fv~ngi~~hN 40 (46)
T smart00305 22 DPTVTENHNFIANGILVHN 40 (46)
T ss_pred eeEeCCCCeEEECCEEEEe
Confidence 3468899999999998754
No 194
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=27.80 E-value=52 Score=23.91 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=17.6
Q ss_pred HHhhcCCcc-ccceEEE--CCEEecC
Q 031378 105 KFSATRGVY-ATPTFFV--NGFSLAG 127 (160)
Q Consensus 105 k~a~~~GV~-GTPTffI--NG~~~~g 127 (160)
.++.+.+|. |.|||++ +|.++.+
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred hhHhccCcccCCCEEEEEcCCceecc
Confidence 456788998 9999999 5665544
No 195
>PF04239 DUF421: Protein of unknown function (DUF421); InterPro: IPR007353 This family of uncharacterised proteins is known as YDFR family; PDB: 3C6F_D.
Probab=27.77 E-value=40 Score=23.60 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=15.6
Q ss_pred ccccceEEE-CCEEecCC--CCCCCHHHHHHHHHH
Q 031378 112 VYATPTFFV-NGFSLAGA--GSPLDYNGWRKVIDP 143 (160)
Q Consensus 112 V~GTPTffI-NG~~~~ga--~s~~~~e~~~~~Id~ 143 (160)
+.|.|+.+| ||+....+ ....+.+++...+..
T Consensus 4 ~~g~p~~Li~dG~i~~~~l~~~~it~~dl~~~LR~ 38 (99)
T PF04239_consen 4 LEGKPTVLIRDGKIDEDNLRRARITEEDLLSALRE 38 (99)
T ss_dssp -----EEEEETTEE-HHHHHHTT--HHHHHHHHHH
T ss_pred ccCCcEEEEECCEECHHHHhHcCCCHHHHHHHHHh
Confidence 579999999 99987532 224556666665553
No 196
>smart00595 MADF subfamily of SANT domain.
Probab=27.35 E-value=1.7e+02 Score=19.19 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=24.3
Q ss_pred HHHh-chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCC
Q 031378 46 LEIV-QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSD 93 (160)
Q Consensus 46 l~~~-~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~ 93 (160)
++.+ .++-.|+....+..............+..+|.+ .++.+.-+++
T Consensus 3 I~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~~-~~~~~~kw~~ 50 (89)
T smart00595 3 IELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGLS-VEECKKRWKN 50 (89)
T ss_pred HHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCcC-HHHHHHHHHH
Confidence 3455 566666664444443333333333333446887 5666655554
No 197
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=26.82 E-value=2e+02 Score=23.96 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 99 LTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 99 ~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
.++...++-...||+| ++++|.. |....++.++..++++......
T Consensus 29 ~l~~li~~l~~~Gv~G---i~~~Gst--GE~~~Lt~eEr~~~~~~~~~~~ 73 (303)
T PRK03620 29 AYREHLEWLAPYGAAA---LFAAGGT--GEFFSLTPDEYSQVVRAAVETT 73 (303)
T ss_pred HHHHHHHHHHHcCCCE---EEECcCC--cCcccCCHHHHHHHHHHHHHHh
Confidence 3444455555566665 6888873 5556888999999999887655
No 198
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.10 E-value=2e+02 Score=24.05 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCccc
Q 031378 99 LTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPL 156 (160)
Q Consensus 99 ~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~~ 156 (160)
.++...+.-...||+| +++||.. |.....|.++.+++++...+.. .++.|+
T Consensus 30 ~l~~lv~~li~~Gv~G---i~v~Gst--GE~~~Lt~eEr~~v~~~~~~~~--~grvpv 80 (309)
T cd00952 30 ETARLVERLIAAGVDG---ILTMGTF--GECATLTWEEKQAFVATVVETV--AGRVPV 80 (309)
T ss_pred HHHHHHHHHHHcCCCE---EEECccc--ccchhCCHHHHHHHHHHHHHHh--CCCCCE
Confidence 3444455555677776 7888884 5556888999999999888765 345554
No 199
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=25.76 E-value=89 Score=18.32 Aligned_cols=20 Identities=30% Similarity=0.518 Sum_probs=15.5
Q ss_pred CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 121 NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 121 NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
||+.. | +++.++++++|.+-
T Consensus 7 ~g~~~-G---P~s~~el~~l~~~g 26 (45)
T PF14237_consen 7 NGQQQ-G---PFSLEELRQLISSG 26 (45)
T ss_pred CCeEE-C---CcCHHHHHHHHHcC
Confidence 77775 6 67799999988753
No 200
>PF12812 PDZ_1: PDZ-like domain
Probab=25.37 E-value=60 Score=21.79 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=18.2
Q ss_pred cceEEE---CCEEecCCCCCCCHHHHHHHHHHH
Q 031378 115 TPTFFV---NGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 115 TPTffI---NG~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
.+.++| ||++.++ ++++.+.+.++
T Consensus 49 ~~g~iI~~Vn~kpt~~------Ld~f~~vvk~i 75 (78)
T PF12812_consen 49 SKGFIITSVNGKPTPD------LDDFIKVVKKI 75 (78)
T ss_pred CCCeEEEeECCcCCcC------HHHHHHHHHhC
Confidence 567777 8888764 89988887654
No 201
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=25.29 E-value=1.2e+02 Score=21.22 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=21.8
Q ss_pred eEEECCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCccc
Q 031378 117 TFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPL 156 (160)
Q Consensus 117 TffING~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~~ 156 (160)
.+||||+++.. ..+.+.|.....+-...+..|.
T Consensus 47 ~~fVN~R~v~~-------~~l~~ai~~~y~~~~~~~~~P~ 79 (122)
T cd00782 47 FLFVNGRPVRD-------KLLSKAINEAYRSYLPKGRYPV 79 (122)
T ss_pred EEEECCeEecC-------HHHHHHHHHHHHHhCcCCCCcE
Confidence 48999999962 5677777777655433344553
No 202
>PF05488 PAAR_motif: PAAR motif; InterPro: IPR008727 The PAAR motif is usually found in pairs in a family of bacterial membrane proteins. It is also found as a triplet of tandem repeats comprising the entire length in a another family of hypothetical proteins.
Probab=25.26 E-value=21 Score=23.43 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=11.4
Q ss_pred ccccceEEECCEEe
Q 031378 112 VYATPTFFVNGFSL 125 (160)
Q Consensus 112 V~GTPTffING~~~ 125 (160)
+.|.|++++||+++
T Consensus 47 ~~G~~~v~i~G~p~ 60 (76)
T PF05488_consen 47 VEGSPTVFINGKPA 60 (76)
T ss_pred ccCCCCccCCcchh
Confidence 45789999999876
No 203
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=25.21 E-value=48 Score=24.30 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=15.0
Q ss_pred eEEE--CCEEecCCCCCCCHHHHHHH
Q 031378 117 TFFV--NGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 117 TffI--NG~~~~ga~s~~~~e~~~~~ 140 (160)
||+| ||+++.-..+..+.+++.+.
T Consensus 126 tflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 126 KFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred EEEECCCCcEEEEECCCCCHHHHHhc
Confidence 6777 79987544445556666543
No 204
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=25.03 E-value=2.9e+02 Score=23.10 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhcCCc-----cccceEEE
Q 031378 96 TDLLTRVSFKFSATRGV-----YATPTFFV 120 (160)
Q Consensus 96 ~~~~i~~~~k~a~~~GV-----~GTPTffI 120 (160)
.-..+..+.+.|++..+ +|+|+||+
T Consensus 39 vl~~ileN~~iA~~~~~PlCQDTG~~~~fv 68 (271)
T PF05681_consen 39 VLEQILENAEIAAKEKLPLCQDTGIPVFFV 68 (271)
T ss_pred HHHHHHHHHHHHhhcCcccccCCCeEEEEE
Confidence 34456666777766655 79999999
No 205
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=24.99 E-value=1.1e+02 Score=21.14 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=14.1
Q ss_pred cccceEEECCEEecCCCCCCCHHHHH
Q 031378 113 YATPTFFVNGFSLAGAGSPLDYNGWR 138 (160)
Q Consensus 113 ~GTPTffING~~~~ga~s~~~~e~~~ 138 (160)
.--|++.|+|++++ +.+..
T Consensus 38 ~d~p~V~V~Gr~~~-------~~eVt 56 (86)
T PF11521_consen 38 EDDPTVMVAGRPYP-------YSEVT 56 (86)
T ss_dssp -SS-EEEETTEEEE-------HHHHH
T ss_pred ccCceEEECCEEee-------hhhcC
Confidence 45899999999996 66665
No 206
>COG4001 Predicted metal-binding protein [General function prediction only]
Probab=24.92 E-value=1.3e+02 Score=21.34 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHH
Q 031378 64 RTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLT 100 (160)
Q Consensus 64 ~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i 100 (160)
...+.+++++..+.++|+| .+++++.|.++....-+
T Consensus 57 ~a~ivkkive~garAfgVd-ee~iRE~~~d~ywrrGl 92 (102)
T COG4001 57 LASIVKKIVERGARAFGVD-EEDIREQMHDQYWRRGL 92 (102)
T ss_pred HHHHHHHHHHhcchhcCCC-HHHHHHHHHHHHHHHHH
Confidence 4567788888888889999 59998888877665544
No 207
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=24.59 E-value=91 Score=27.12 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=26.8
Q ss_pred HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHH
Q 031378 106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVID 142 (160)
Q Consensus 106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id 142 (160)
.|.++||.|.||... ||-.+ +..++.+-+++.++-.
T Consensus 92 iAnefgiqGYPTIk~~kgd~a~-dYRG~R~Kd~iieFAh 129 (468)
T KOG4277|consen 92 IANEFGIQGYPTIKFFKGDHAI-DYRGGREKDAIIEFAH 129 (468)
T ss_pred hHhhhccCCCceEEEecCCeee-ecCCCccHHHHHHHHH
Confidence 478899999999766 77766 4556677887776543
No 208
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=24.22 E-value=2.4e+02 Score=23.10 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 99 LTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 99 ~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
.++...++..+.||+| +++||.. |.....+.++..++++......
T Consensus 23 ~l~~~i~~l~~~Gv~g---i~~~Gs~--GE~~~ls~~Er~~~~~~~~~~~ 67 (292)
T PRK03170 23 ALRKLVDYLIANGTDG---LVVVGTT--GESPTLTHEEHEELIRAVVEAV 67 (292)
T ss_pred HHHHHHHHHHHcCCCE---EEECCcC--CccccCCHHHHHHHHHHHHHHh
Confidence 3444455555666665 6777774 4445778888888888777654
No 209
>PF14452 Multi_ubiq: Multiubiquitin
Probab=23.89 E-value=1.2e+02 Score=19.56 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=18.5
Q ss_pred eEEECCEEecCCCCCCCHHHHHHH
Q 031378 117 TFFVNGFSLAGAGSPLDYNGWRKV 140 (160)
Q Consensus 117 TffING~~~~ga~s~~~~e~~~~~ 140 (160)
.|.|||+.+.-..+..|.+++.++
T Consensus 4 ~i~vn~~~~~~~~~~iTg~qi~~l 27 (72)
T PF14452_consen 4 RIIVNGRPYEWPDPTITGRQILAL 27 (72)
T ss_pred EEEECCeEEEECCCCcCHHHHHHH
Confidence 578999998866677778886654
No 210
>PRK08508 biotin synthase; Provisional
Probab=23.57 E-value=2.1e+02 Score=23.46 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCcccccC
Q 031378 95 STDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPLHLF 159 (160)
Q Consensus 95 ~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~~~~~ 159 (160)
..++.+ ...+.+++.|+..|=+++++ + |. +.++..+.+..+..-+ ++..|+|+|
T Consensus 135 ~~~~~l-~~i~~a~~~Gi~v~sg~I~G---l-GE----t~ed~~~~l~~lr~L~--~~svpl~~~ 188 (279)
T PRK08508 135 TWEERF-QTCENAKEAGLGLCSGGIFG---L-GE----SWEDRISFLKSLASLS--PHSTPINFF 188 (279)
T ss_pred CHHHHH-HHHHHHHHcCCeecceeEEe---c-CC----CHHHHHHHHHHHHcCC--CCEEeeCCc
Confidence 344444 34667889998777766665 1 21 2678888887775443 556899876
No 211
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=23.55 E-value=47 Score=23.97 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=18.9
Q ss_pred HHHHhhcCCccccceEEECCEEe
Q 031378 103 SFKFSATRGVYATPTFFVNGFSL 125 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffING~~~ 125 (160)
.|+++++.||=|+=+..|||+..
T Consensus 47 afr~sCr~giCGsCam~ING~~~ 69 (110)
T PF13085_consen 47 AFRYSCRSGICGSCAMRINGRPR 69 (110)
T ss_dssp -B--SSSSSSSSTTEEEETTEEE
T ss_pred EEEecCCCCCCCCCEEEECCcee
Confidence 46789999999999999999985
No 212
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=23.48 E-value=69 Score=19.41 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=12.2
Q ss_pred cccceEEECCEEecC
Q 031378 113 YATPTFFVNGFSLAG 127 (160)
Q Consensus 113 ~GTPTffING~~~~g 127 (160)
.|-+.++|||+.+-.
T Consensus 18 ~GI~~V~VNG~~vv~ 32 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVE 32 (48)
T ss_dssp BSEEEEEETTEEEEC
T ss_pred CCEEEEEECCEEEEE
Confidence 577899999998753
No 213
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=23.43 E-value=1.3e+02 Score=21.72 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=13.6
Q ss_pred eEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378 117 TFFV--NGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 117 TffI--NG~~~~ga~s~~~~e~~~~~Id~ 143 (160)
+|+| ||+...-..+....+...++++.
T Consensus 123 ~~lid~~G~i~~~~~g~~~~~~~~~~~~~ 151 (154)
T PRK09437 123 SFLIDADGKIEHVFDKFKTSNHHDVVLDY 151 (154)
T ss_pred EEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence 4676 78876533332224444444443
No 214
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=22.94 E-value=1e+02 Score=23.56 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=27.2
Q ss_pred HhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 106 FSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 106 ~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
++-...-.|-=|-+|||..++|-.+ .++...++.+
T Consensus 68 ~gIp~e~~SCHT~VI~Gy~vEGHVP---a~aI~~ll~~ 102 (149)
T COG3019 68 LGIPYEMQSCHTAVINGYYVEGHVP---AEAIARLLAE 102 (149)
T ss_pred cCCChhhccccEEEEcCEEEeccCC---HHHHHHHHhC
Confidence 5555556788899999999999888 8886666554
No 215
>PRK13190 putative peroxiredoxin; Provisional
Probab=22.71 E-value=1.4e+02 Score=23.28 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=22.5
Q ss_pred ccceEEE---CCEEec----CCCCCCCHHHHHHHHHHHhh
Q 031378 114 ATPTFFV---NGFSLA----GAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 114 GTPTffI---NG~~~~----ga~s~~~~e~~~~~Id~~l~ 146 (160)
+.|+.|| ||++.. ....+.+.+++...|+++..
T Consensus 116 ~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 116 TVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred EEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 5788777 777642 11224579999999998764
No 216
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=22.67 E-value=2.5e+02 Score=22.79 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 99 LTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 99 ~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
.++...++..+.||+| ++++|.. |.....|.++++++++...+..
T Consensus 22 ~~~~~i~~l~~~Gv~g---l~v~Gst--GE~~~lt~~Er~~l~~~~~~~~ 66 (284)
T cd00950 22 ALERLIEFQIENGTDG---LVVCGTT--GESPTLSDEEHEAVIEAVVEAV 66 (284)
T ss_pred HHHHHHHHHHHcCCCE---EEECCCC--cchhhCCHHHHHHHHHHHHHHh
Confidence 3444445555566655 6777764 3345777888888888777554
No 217
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=22.19 E-value=97 Score=27.22 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=31.1
Q ss_pred HHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378 103 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS 146 (160)
Q Consensus 103 ~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~ 146 (160)
+.+.|+++||..-||..| +|.+++ ..|..+.+.|..+|-.++.
T Consensus 101 d~klAKKLgv~E~~SiyVfkd~~~IE-ydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 101 DAKLAKKLGVEEEGSIYVFKDGEVIE-YDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp THHHHHHHT--STTEEEEEETTEEEE-E-S--SHHHHHHHHHHHHS
T ss_pred HHHHHHhcCccccCcEEEEECCcEEE-ecCccCHHHHHHHHHHhcc
Confidence 456689999999999988 888874 3346679999999988873
No 218
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=21.69 E-value=1.5e+02 Score=22.48 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=21.5
Q ss_pred cceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378 115 TPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL 145 (160)
Q Consensus 115 TPTffING~~~~ga~s~~~~e~~~~~Id~~l 145 (160)
-|...|||+.+. ..+.+...+++++++
T Consensus 129 aP~~~in~~~~~----~lt~~~~~~il~~~~ 155 (156)
T PRK05988 129 SPAAMLDGEVHG----RLDPQRLDALLAEAR 155 (156)
T ss_pred CCeEEECCEEeC----CCCHHHHHHHHHHhh
Confidence 599999999884 455799888887754
No 219
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=21.65 E-value=1.3e+02 Score=19.82 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=19.1
Q ss_pred cceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 115 TPTFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 115 TPTffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
=|.+.|||..+. ..+.++..++++.
T Consensus 55 ~P~v~V~~~~y~----~v~~~~v~~iv~~ 79 (80)
T cd03083 55 GPALLINNRVFT----RLTPGRIDQIAEL 79 (80)
T ss_pred CCeEEECCEEEC----CCCHHHHHHHHhc
Confidence 389999999884 4457888888764
No 220
>COG4104 Uncharacterized conserved protein [Function unknown]
Probab=21.51 E-value=68 Score=22.87 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=11.9
Q ss_pred ccccceEEECCEEe
Q 031378 112 VYATPTFFVNGFSL 125 (160)
Q Consensus 112 V~GTPTffING~~~ 125 (160)
+.|.++|.|||++.
T Consensus 61 ~~Gs~tv~InGkpa 74 (98)
T COG4104 61 AEGSSTVKINGKPA 74 (98)
T ss_pred EeccceEEECCEEe
Confidence 56889999999986
No 221
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=21.46 E-value=36 Score=15.48 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=4.2
Q ss_pred cccceE
Q 031378 113 YATPTF 118 (160)
Q Consensus 113 ~GTPTf 118 (160)
+||||.
T Consensus 2 ~gTPTM 7 (13)
T PF10555_consen 2 SGTPTM 7 (13)
T ss_pred CCCccc
Confidence 578874
No 222
>PLN02417 dihydrodipicolinate synthase
Probab=21.22 E-value=2.8e+02 Score=22.76 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378 100 TRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148 (160)
Q Consensus 100 i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~ 148 (160)
++...++-...||+| ++++|.. |.....+.++..++++..++..
T Consensus 24 ~~~~i~~l~~~Gv~G---i~~~Gst--GE~~~ls~~Er~~~~~~~~~~~ 67 (280)
T PLN02417 24 YDSLVNMQIENGAEG---LIVGGTT--GEGQLMSWDEHIMLIGHTVNCF 67 (280)
T ss_pred HHHHHHHHHHcCCCE---EEECccC--cchhhCCHHHHHHHHHHHHHHh
Confidence 444445445555554 7888884 5556888999999998877654
No 223
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=20.60 E-value=96 Score=26.04 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=20.9
Q ss_pred cccceEEECCEEecCCCCCCCHHHHHHHHHHH
Q 031378 113 YATPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 113 ~GTPTffING~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
.|.||+-|||+..-- +-..+.|.+.+.+.
T Consensus 99 ~G~PTiEIdGIrMhr---t~~tdP~~Dt~~Kv 127 (287)
T COG2521 99 PGAPTIEIDGIRMHR---TKGTDPLEDTLAKV 127 (287)
T ss_pred CCCCeEEEccEEEec---ccCcCcHHHHHhhh
Confidence 358999999998753 33367777777665
No 224
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=20.35 E-value=1.6e+02 Score=22.73 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=21.4
Q ss_pred cceEEECCEEecCCCCCCCHHHHHHHHHHH
Q 031378 115 TPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 144 (160)
Q Consensus 115 TPTffING~~~~ga~s~~~~e~~~~~Id~~ 144 (160)
-|...|||..+. ..+.+.+.++|+..
T Consensus 142 AP~~~Vn~~~~~----~lt~e~v~~il~~~ 167 (169)
T PRK07571 142 APAVVFDGKVAG----KQTPESVLEKVQGW 167 (169)
T ss_pred CCeEEECCEEeC----CCCHHHHHHHHHHH
Confidence 499999999884 55579999988876
No 225
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.24 E-value=1.1e+02 Score=21.45 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhcCCChhH-HHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378 65 TAVVKEIVKFAAEGIGNSYSS-ALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP 143 (160)
Q Consensus 65 ~~i~~~la~~A~~~~Gld~~~-~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~ 143 (160)
++.+..+....++..+ ..+. -|.+ .++..++.++.-.+.+ -..|.-.|-|++.|.-+....++-+.+.|+..+++
T Consensus 15 ~~~~~~l~~~l~~~~~-~~v~~~~lE--~~P~i~~~l~~l~~~G-~~~i~lvPl~L~~G~H~~~Dipge~~~SW~~~l~~ 90 (103)
T cd03413 15 NAVYAALEYVLREEDP-ANVFVGTVE--GYPGLDDVLAKLKKAG-IKKVTLMPLMLVAGDHAHNDMAGDEPDSWKSILEA 90 (103)
T ss_pred hhHHHHHHHHHHhcCC-CcEEEEEEc--CCCCHHHHHHHHHHcC-CCEEEEEehhheecccchhcCCCCCchhHHHHHHH
Confidence 5667777777655322 2111 1112 4566777765544433 33588999999988876544443346789999987
Q ss_pred H
Q 031378 144 L 144 (160)
Q Consensus 144 ~ 144 (160)
.
T Consensus 91 ~ 91 (103)
T cd03413 91 A 91 (103)
T ss_pred C
Confidence 5
Done!