BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031379
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 119/154 (77%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 3 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 62
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 63 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 122
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN DPAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 123 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 156
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 119/154 (77%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 4 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 63
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 64 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 123
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN DPAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 124 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 157
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 119/154 (77%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN DPAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 119/154 (77%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 4 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 63
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 64 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 123
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN DPAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 124 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 157
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 220 bits (560), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 119/154 (77%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN DPAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 220 bits (560), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 119/154 (77%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 7 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 66
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 67 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 126
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN DPAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 127 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 160
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 218 bits (555), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 118/154 (76%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN PAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 125 EPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 218 bits (554), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 118/154 (76%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHP VYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN DPAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 118/154 (76%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN PAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 125 EPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 118/154 (76%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNV PSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN DPAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 217 bits (552), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 118/154 (76%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTV LSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN DPAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 216 bits (551), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 118/154 (76%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
GIA RLA+ERK+WRK+HP GFVA P PDG++NLM W C IPGK GT WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTV LSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+PN DPAQ E Y ++ Q+ EY++RVR QAK++
Sbjct: 122 EPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKF 155
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 207 bits (526), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 115/153 (75%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
+ + RL EERK WR++HP GF AKP DG ++LM W IPGK T WEGG + LT
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F E+YP++PPKC+F FHPNVYPSGTVCLSILNE+ GW+PAIT+KQIL+GIQDLLD
Sbjct: 68 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 127
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
PN A PAQTE Y +F +D EY++RVR QA++
Sbjct: 128 DPNIASPAQTEAYTMFKKDKVEYEKRVRAQARE 160
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 112/148 (75%)
Query: 9 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSED 68
RL EERK WRK+HP GF AKP DGS++L W IPGK GT+W GG +P+T+ + +
Sbjct: 10 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 69
Query: 69 YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
YPSKPPK KFP GF+HPNVYPSGT+CLSILNED WRPAIT+KQI++G+QDLLD PNP
Sbjct: 70 YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNS 129
Query: 129 PAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PAQ + F ++ AEY ++V QAKQY
Sbjct: 130 PAQEPAWRSFSRNKAEYDKKVLLQAKQY 157
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 112/148 (75%)
Query: 9 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSED 68
RL EERK WRK+HP GF AKP DGS++L W IPGK GT+W GG +P+T+ + +
Sbjct: 8 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67
Query: 69 YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
YPSKPPK KFP GF+HPNVYPSGT+CLSILNED WRPAIT+KQI++G+QDLLD PNP
Sbjct: 68 YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNS 127
Query: 129 PAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PAQ + F ++ AEY ++V QAKQY
Sbjct: 128 PAQEPAWRSFSRNKAEYDKKVLLQAKQY 155
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 125 bits (314), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 83/150 (55%), Gaps = 7/150 (4%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHF 65
AR RL + K +++ P G P+ N+M+W+ I G T W+GG F L+L F
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQ-----DNNIMLWNAVIFGPDDTPWDGGTFKLSLQF 59
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
SEDYP+KPP +F FHPN+Y G++CL IL N W P V IL IQ LL PN
Sbjct: 60 SEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPN 117
Query: 126 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
P PA +E ++ + EY RRVR +Q
Sbjct: 118 PNSPANSEAARMYSESKREYNRRVRDVVEQ 147
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHF 65
AR RL + K +++ P G A P LPD N+MVW+ I G A T +E G F L L F
Sbjct: 5 ARRRLMRDFKRMKEDAPPGVSASP--LPD---NVMVWNAMIIGPADTPYEDGTFRLLLEF 59
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
E+YP+KPP KF FHPNVY +G +CL IL N W P V IL IQ L + PN
Sbjct: 60 DEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ--NRWTPTYDVASILTSIQSLFNDPN 117
Query: 126 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
PA PA E LF ++Y +RV++ ++
Sbjct: 118 PASPANVEAATLFKDHKSQYVKRVKETVEK 147
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 83/150 (55%), Gaps = 7/150 (4%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHF 65
AR RL + K +++ P G P N+M W+ I G GT +E G F L + F
Sbjct: 5 ARRRLMRDFKRLQEDPPVGVSGAP-----SENNIMQWNAVIFGPEGTPFEDGTFKLVIEF 59
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
SE+YP+KPP +F FHPNVY G++CL IL N W P V IL IQ LLD+PN
Sbjct: 60 SEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ--NRWSPTYDVSSILTSIQSLLDEPN 117
Query: 126 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
P PA ++ L+ ++ EY++RV +Q
Sbjct: 118 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 147
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 83/150 (55%), Gaps = 7/150 (4%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHF 65
+R RL + K +++ P G P N++ W I G T +E G F L+L F
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAP-----TEDNILTWEAIIFGPQETPFEDGTFKLSLEF 59
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
+E+YP+KPP KF FHPNVY G++CL IL N W P V IL IQ LLD+PN
Sbjct: 60 TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDVAAILTSIQSLLDEPN 117
Query: 126 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
P PA + L+ ++ EY++RV+Q +Q
Sbjct: 118 PNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 83/150 (55%), Gaps = 7/150 (4%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHF 65
+R RL + K +++ P G P N++ W I G T +E G F L+L F
Sbjct: 8 SRRRLMRDFKKLQEDPPAGVSGAP-----TEDNILTWEAIIFGPQETPFEDGTFKLSLEF 62
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
+E+YP+KPP KF FHPNVY G++CL IL N W P V IL IQ LLD+PN
Sbjct: 63 TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDVAAILTSIQSLLDEPN 120
Query: 126 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
P PA + L+ ++ EY++RV+Q +Q
Sbjct: 121 PNSPANSLAAQLYQENRREYEKRVQQIVEQ 150
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 7/154 (4%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G +A R+ +E + +++ P A P +L W TI G + + ++GG F LT
Sbjct: 4 GSMALKRIQKELQDLQRDPPAQCSAGPV-----GDDLFHWQATIMGPSDSPYQGGVFFLT 58
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+HF DYP KPPK F +HPN+ +G++CL IL + W PA+TV ++L+ I LL
Sbjct: 59 IHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLC 116
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP + H++ D +Y R R+ ++Y
Sbjct: 117 DPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQKY 150
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 7/152 (4%)
Query: 5 IARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLH 64
+A R+ E K+ P A P +L W TI G A + + GG F L++H
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPV-----GDDLFHWQATIMGPADSPYAGGVFFLSIH 55
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
F DYP KPPK F +HPN+ +G++CL IL + W PA+T+ ++L+ I LL P
Sbjct: 56 FPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSISSLLTDP 113
Query: 125 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
NP DP E H++ D + Y+ R+ ++Y
Sbjct: 114 NPDDPLVPEIAHVYKTDRSRYELSAREWTRKY 145
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 1 MSGGIARG-----RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWE 55
MSG + RG R+ +E +++ P A P +L W TI G + ++
Sbjct: 10 MSGLVPRGSMALKRIQKELSDLQRDPPAHCSAGPV-----GDDLFHWQATIMGPPDSAYQ 64
Query: 56 GGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILV 115
GG F LT+HF DYP KPPK F +HPN+ +G++CL IL W PA+TV ++L+
Sbjct: 65 GGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLL 122
Query: 116 GIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
I LL PNP DP + ++ D +Y R R+ ++Y
Sbjct: 123 SICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 163
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G +A R+ +E +++ P A P +L W TI G + ++GG F LT
Sbjct: 1 GAMALKRIQKELSDLQRDPPAHCSAGPV-----GDDLFHWQATIMGPPDSAYQGGVFFLT 55
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+HF DYP KPPK F +HPN+ +G++CL IL + W PA+TV ++L+ I LL
Sbjct: 56 VHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLC 113
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP + ++ D +Y R R+ ++Y
Sbjct: 114 DPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 147
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHF 65
A R+ +E K+ P A P ++ W TI G + + GG F L +HF
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPV-----GDDMFHWQATIMGPEDSPYSGGVFFLNIHF 76
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
DYP KPPK F +HPN+ G +CL IL + W PA+T+ ++L+ I LL PN
Sbjct: 77 PSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQ--WSPALTISKVLLSISSLLTDPN 134
Query: 126 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
P DP E HL+ D Y + R+ +++Y
Sbjct: 135 PDDPLVPEIAHLYKSDRMRYDQTAREWSQKY 165
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 10/160 (6%)
Query: 1 MSGGIARGRLAEERKSWRKNHPHGFVAK--PETLPDGSV--NLMVWHCTIPGKAGTDWEG 56
MSG + RG +A +R N +A+ P G V ++ W TI G + ++G
Sbjct: 10 MSGLVPRGSMALKRIHKELND----LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQG 65
Query: 57 GFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
G F LT+HF DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+
Sbjct: 66 GVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLS 123
Query: 117 IQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
I LL PNP DP E ++ D +Y R R+ ++Y
Sbjct: 124 ICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 163
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G +A R+ +E ++ P A P ++ W TI G + ++GG F LT
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPV-----GDDMFHWQATIMGPNDSPYQGGVFFLT 55
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+HF DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLC 113
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP E ++ D +Y R R+ ++Y
Sbjct: 114 DPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G +A R+ +E ++ P A P ++ W TI G + ++GG F LT
Sbjct: 4 GSMALKRIHKELNDLARDPPAQCSAGPV-----GDDMFHWQATIMGPNDSPYQGGVFFLT 58
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+HF DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 59 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLC 116
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP E ++ D +Y R R+ ++Y
Sbjct: 117 DPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 150
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G +A R+ +E ++ P A P ++ W TI G + ++GG F LT
Sbjct: 1 GSMALKRIHKELNDLARDPPAQCSAGPV-----GDDMFHWQATIMGPNDSPYQGGVFFLT 55
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+HF DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLC 113
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP E ++ D +Y R R+ ++Y
Sbjct: 114 DPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 5 IARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLH 64
+A R+ +E +++ P A P +L W TI G + ++GG F LT+H
Sbjct: 7 MALKRIQKELSDLQRDPPAHCSAGPV-----GDDLFHWQATIMGPPDSAYQGGVFFLTVH 61
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
F DYP KPPK F +HPN+ +G++CL IL + W PA+TV ++L+ I LL P
Sbjct: 62 FPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLCDP 119
Query: 125 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
NP DP + ++ D +Y R R+ ++Y
Sbjct: 120 NPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 151
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G +A R+ +E ++ P A P ++ W TI G + ++GG F LT
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPV-----GDDMFHWQATIMGPNDSPYQGGVFFLT 55
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+HF DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WGPALTISKVLLSICSLLC 113
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP E ++ D +Y R R+ ++Y
Sbjct: 114 DPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 99.0 bits (245), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHF 65
+ R+A+E ++ P A P +L W +I G A + + GG F L++HF
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPV-----GDDLYHWQASIMGPADSPYAGGVFFLSIHF 57
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
DYP KPPK F +HPN+ +G +CL IL + W PA+T+ ++L+ I LL N
Sbjct: 58 PTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ--WSPALTLSKVLLSICSLLTDAN 115
Query: 126 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
P DP E H++ D +Y+ R+ K+Y
Sbjct: 116 PDDPLVPEIAHIYKTDRPKYEATAREWTKKY 146
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Query: 2 SGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPL 61
SG +A R+ +E +++ P A P +L W TI G + ++GG F L
Sbjct: 4 SGSMALKRIQKELSDLQRDPPAHCRAGPV-----GDDLFHWQATIMGPPDSAYQGGVFFL 58
Query: 62 TLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
T+HF DYP KPPK F +HPN+ +G++ L IL W PA+TV ++L+ I LL
Sbjct: 59 TVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQ--WSPALTVSKVLLSICSLL 116
Query: 122 DQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP + ++ D +Y R R+ ++Y
Sbjct: 117 CDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 151
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
++ W TI G + ++GG F LT+HF DYP KPPK F +HPN+ +G++CL I
Sbjct: 29 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 88
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L W PA+T+ ++L+ I LL PNP DP E ++ D +Y R R+ ++Y
Sbjct: 89 LRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
++ W TI G + ++GG F LT+HF DYP KPPK F +HPN+ +G++CL I
Sbjct: 39 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 98
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L W PA+T+ ++L+ I LL PNP DP E ++ D +Y R R+ ++Y
Sbjct: 99 LRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQKY 155
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G +A R+ +E ++ P A P ++ W TI G + ++GG F LT
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPV-----GDDMFHWQATIMGPNDSPYQGGVFFLT 55
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+HF DYP KPPK F +HPN+ +G++CL L W PA+T+ ++L+ I LL
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQ--WSPALTISKVLLSICSLLC 113
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP E ++ D +Y R R+ ++Y
Sbjct: 114 DPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G +A R+ +E ++ P A P ++ W T G + ++GG F LT
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPV-----GDDMFHWQATAMGPNDSPYQGGVFFLT 55
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+HF DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLC 113
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP E ++ D +Y R R+ ++Y
Sbjct: 114 DPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 4 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTL 63
G A R+ +E ++ P A P ++ W TI G + ++GG F LT+
Sbjct: 2 GSALKRINKELSDLARDPPAQCSAGPV-----GDDMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
HF DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP E ++ D +Y R R+ ++Y
Sbjct: 115 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 147
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
+A R+ +E ++ P A P ++ W TI G + ++GG F LT
Sbjct: 9 NSMALKRINKELSDLARDPPAQCSAGPV-----GDDMFHWQATIMGPNDSPYQGGVFFLT 63
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+HF DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 64 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLC 121
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP E ++ D +Y R R+ ++Y
Sbjct: 122 DPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 155
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 1 MSGGIARGRLAEERKSWRKNHPHGFVAK--PETLPDGSV--NLMVWHCTIPGKAGTDWEG 56
MSG + RG +A +R N +A+ P G V ++ W TI G + ++G
Sbjct: 10 MSGLVPRGSMALKRIHKELND----LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQG 65
Query: 57 GFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
G F LT+HF DYP KPPK F +HPN+ +G++ L IL W PA+T+ ++L+
Sbjct: 66 GVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQ--WSPALTISKVLLS 123
Query: 117 IQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
I LL PNP DP E ++ D +Y R R+ ++Y
Sbjct: 124 ICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 163
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
++ W TI G + ++GG F LT+HF DYP KPPK F +HPN+ +G++CL I
Sbjct: 37 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 96
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L W PA+T+ ++L+ I LL PNP DP E ++ D +Y R R+ ++Y
Sbjct: 97 LRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 153
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
++ W TI G + ++GG F LT+HF DYP KPPK F +HPN+ +G++CL I
Sbjct: 28 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 87
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L + W PA+T+ ++L+ I LL PNP DP E ++ D +Y R R+ ++Y
Sbjct: 88 LR--SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 144
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 2 SGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPL 61
+G +A R+ +E ++ P A P ++ W TI G + ++GG F L
Sbjct: 1 AGSMALKRIHKELNDLARDPPAQCSAGPV-----GDDMFHWQATIMGPNDSPYQGGVFFL 55
Query: 62 TLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
T+HF DYP KPPK F +HPN+ +G++ L IL W PA+T+ ++L+ I LL
Sbjct: 56 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPALTISKVLLSICSLL 113
Query: 122 DQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP E ++ D +Y R R+ ++Y
Sbjct: 114 CDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 148
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 15/156 (9%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHF 65
A+ RL +E + K+ P G VA P++ N+ +W C I G T + G F L F
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKS----ENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQIL 114
+DYP PPK F HPN+YP+G VC+SIL+ + W P +V++IL
Sbjct: 61 PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 120
Query: 115 VGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 150
+ + +L +PN A + L+ + E++R+V+
Sbjct: 121 LSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
+L W TI G + ++GG F LT+HF DYP KPPK F +HPN+ +G++CL I
Sbjct: 32 DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 91
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L W PA+T+ ++L+ I LL PNP DP E ++ D Y + R+ ++Y
Sbjct: 92 LRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKY 148
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
N+ W TI G G+ +EGG F L + FS DYP KPPK F +H N+ G +CL I
Sbjct: 31 NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDI 90
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L ++ W PA+T+ ++L+ I LL NPADP ++ + AE+ R RQ K+Y
Sbjct: 91 LKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 147
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G +A R+ +E ++ P A+ P G ++ W TI G + ++GG F LT
Sbjct: 1 GAMALKRIHKELNDLARDPP----AQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLT 55
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+HF DYP KPPK F +HPN+ +G++ L IL + W PA+T+ ++L+ I LL
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR--SQWSPALTISKVLLSICSLLC 113
Query: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP E ++ D +Y R R+ ++Y
Sbjct: 114 DPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
N+ W TI G G+ +EGG F L + F+ +YP KPPK F +H N+ G +CL I
Sbjct: 76 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 135
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L ++ W PA+T+ ++L+ I LL NPADP ++ + AE+ R RQ K+Y
Sbjct: 136 LKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 192
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 93.2 bits (230), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
++ W TI G + ++GG F LT+HF DYP KPPK F +HPN+ +G++ L I
Sbjct: 29 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDI 88
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L + W PA+T+ ++L+ I LL PNP DP E ++ D +Y R R+ ++Y
Sbjct: 89 LR--SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 2 SGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPL 61
S +A R+ +E + +++ P A P ++ W TI G + ++GG F L
Sbjct: 1 SAAMAMRRIQKELREIQQDPPCNCSAGPV-----GDDIFHWTATITGPDDSPYQGGLFFL 55
Query: 62 TLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
+HF DYP K P+ F +HPN+ +G +CL IL + W PA+T+ ++L+ I LL
Sbjct: 56 DVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQ--WSPALTLSRVLLSISSLL 113
Query: 122 DQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP+DP E ++ + +++ R+ + Y
Sbjct: 114 TDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMY 148
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
++ W TI G + ++GG F LT+HF DYP KPPK F +HPN+ +G++ L I
Sbjct: 28 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDI 87
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L + W PA+ + ++L+ I LL PNP DP E ++ D +Y R R+ ++Y
Sbjct: 88 LR--SQWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 144
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G A RL E K N P G VA P N W I G T +E G FP
Sbjct: 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMN----EENFFEWEALIMGPEDTCFEFGVFPAI 56
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVK 111
L F DYP PPK +F FHPN+YP G VC+SIL + W P +V+
Sbjct: 57 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE 116
Query: 112 QILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
+IL+ + +L +PN A + ++ D ++ + +Q ++
Sbjct: 117 KILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G A RL E K N P G VA P N W I G T +E G FP
Sbjct: 7 AGTALKRLMAEYKQLTLNPPEGIVAGPMN----EENFFEWEALIMGPEDTCFEFGVFPAI 62
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVK 111
L F DYP PPK +F FHPN+YP G VC+SIL + W P +V+
Sbjct: 63 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE 122
Query: 112 QILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
+IL+ + +L +PN A + ++ D ++ + +Q ++
Sbjct: 123 KILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 166
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G A RL E K N P G VA P N W I G T +E G FP
Sbjct: 4 AGTALKRLMAEYKQLTLNPPEGIVAGPMN----EENFFEWEALIMGPEDTCFEFGVFPAI 59
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVK 111
L F DYP PPK +F FHPN+YP G VC+SIL + W P +V+
Sbjct: 60 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE 119
Query: 112 QILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
+IL+ + +L +PN A + ++ D ++ + +Q ++
Sbjct: 120 KILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 163
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 3 GGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLT 62
G A RL E K N P G VA P N W I G T +E G FP
Sbjct: 5 AGTALKRLMAEYKQLTLNPPEGIVAGPMN----EENFFEWEALIMGPEDTCFEFGVFPAI 60
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVK 111
L F DYP PPK +F FHPN+YP G VC+SIL + W P +V+
Sbjct: 61 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE 120
Query: 112 QILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
+IL+ + +L +PN A + ++ D ++ + +Q ++
Sbjct: 121 KILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 164
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
++ W TI G + ++GG F LT+HF DYP KPPK F +HP + +G++ L I
Sbjct: 29 DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDI 88
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L + W PA+T+ ++L+ I LL PNP DP E ++ D +Y R R+ ++Y
Sbjct: 89 LR--SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 4 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTL 63
GI R R+ +E ++ P G +A P +P+ N ++ I G GT +EGG + L L
Sbjct: 1 GIPR-RITKETQNLANEPPPGIMAVP--VPE---NYRHFNILINGPDGTPYEGGTYKLEL 54
Query: 64 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
E YP +PPK +F +HPN+ G +CL IL + W PA+ ++ +L+ IQ LL
Sbjct: 55 FLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSS 112
Query: 124 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
P P DP ++ F QD + + RQ K Y
Sbjct: 113 PEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIY 145
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 4 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTL 63
GI R R+ +E ++ P G +A P +P+ N ++ I G GT +EGG + L L
Sbjct: 1 GIPR-RITKETQNLANEPPPGIMAVP--VPE---NYRHFNILINGPDGTPYEGGTYKLEL 54
Query: 64 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
E YP +PPK +F +HPN+ G +CL IL + W PA+ ++ +L+ IQ LL
Sbjct: 55 FLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSS 112
Query: 124 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
P P DP ++ F QD + + RQ K Y
Sbjct: 113 PEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIY 145
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 8/146 (5%)
Query: 9 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSED 68
RL +E ++ + G A PDG NL W T+ G T +E + LTL F D
Sbjct: 13 RLQQELRTLLMSGDPGITA----FPDGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67
Query: 69 YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
YP KPP KF +HPNV SG +CL IL E+ W + V+ IL+ +Q LL +PN A
Sbjct: 68 YPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSLQSLLGEPNNAS 125
Query: 129 PAQTEGYHLFIQDAAEYKRRVRQQAK 154
P + ++ + EYK+ + ++ K
Sbjct: 126 PLNAQAADMW-SNQTEYKKVLHEKYK 150
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
++ W + G T +EGGFF L F DYP KPPK KF +HPN+ G VC+SI
Sbjct: 32 DIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISI 91
Query: 98 LNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYK 146
L++ + W P TV+ IL+ + +L PN PA + + ++ AE+K
Sbjct: 92 LHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFK 151
Query: 147 RRVRQQAKQ 155
++V Q ++
Sbjct: 152 KKVAQCVRR 160
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
NL + TI G + +E G F L L+ +DYP + PK +F +HPN+ G +CL +
Sbjct: 31 NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDV 90
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L W PA+ ++ +L+ IQ LL PNP DP + +I++ K + R+ K Y
Sbjct: 91 LK--TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
NL + TI G + +E G F L L+ +DYP + PK +F +HPN+ G +CL +
Sbjct: 33 NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDV 92
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L W PA+ ++ +L+ IQ LL PNP DP + +I++ K + R+ K Y
Sbjct: 93 LK--TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 149
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 10/128 (7%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLS 96
N W I G GT +EGG F L + DYP PPK KF +HPN+ +G +CL
Sbjct: 51 NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLD 110
Query: 97 ILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQT-------EGYHLFIQDAAEYKRRV 149
+L N W PA+T++ L+ IQ LL P P DP E + LF++ A+ + +
Sbjct: 111 VLK--NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTF 168
Query: 150 RQQAKQYP 157
K+ P
Sbjct: 169 ATGPKEEP 176
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 2 SGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPL 61
S G+ R + E ++ + P G A+P+ N +H I G + +EGG F L
Sbjct: 3 SAGLPRRIIKETQRLLAEPVP-GIKAEPD-----ESNARYFHVVIAGPQDSPFEGGTFKL 56
Query: 62 TLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
L E+YP PK +F +HPNV G +CL IL + W PA+ ++ +L+ IQ LL
Sbjct: 57 ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALL 114
Query: 122 DQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
PNP DP + + + A+ R + Y
Sbjct: 115 SAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 149
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 18 RKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCK 77
++N+ G AKP S ++M W I G + W+G F LT+HF+ +Y PP K
Sbjct: 36 KENNYKGITAKP-----VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVK 90
Query: 78 FPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYH 136
F FHPNV P +G C+ L+ W T+ IL+ +Q +L P +P E
Sbjct: 91 FITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 150
Query: 137 LFIQDAAEYKRRVR 150
+ ++D + Y+ +R
Sbjct: 151 ILVKDESLYRTILR 164
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
NL + TI G + +E G F L L+ +DYP + PK +F +HPN+ G + L +
Sbjct: 31 NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDV 90
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L W PA+ ++ +L+ IQ LL PNP DP + +I++ K + R+ K Y
Sbjct: 91 LK--TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 33 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGT 92
PD S N +H I G + +EGG F L L E+YP PK +F +HPNV G
Sbjct: 27 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 85
Query: 93 VCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQ 152
+CL IL + W PA+ ++ +L+ IQ LL PNP DP + + + A+ R
Sbjct: 86 ICLDILK--DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW 143
Query: 153 AKQY 156
+ Y
Sbjct: 144 TRLY 147
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 33 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGT 92
PD S N +H I G + +EGG F L L E+YP PK +F +HPNV G
Sbjct: 25 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 83
Query: 93 VCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQ 152
+CL IL + W PA+ ++ +L+ IQ LL PNP DP + + + A+ R
Sbjct: 84 ICLDILK--DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW 141
Query: 153 AKQY 156
+ Y
Sbjct: 142 TRLY 145
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 33 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGT 92
PD S N +H I G + +EGG F L L E+YP PK +F +HPNV G
Sbjct: 30 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 88
Query: 93 VCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQ 152
+CL IL + W PA+ ++ +L+ IQ LL PNP DP + + + A+ R
Sbjct: 89 ICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW 146
Query: 153 AKQY 156
+ Y
Sbjct: 147 TRLY 150
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
+L TI G GT + GG F + L +D+P+ PPK F FHPNV +G +C+++
Sbjct: 41 DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNV 100
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 150
L D W + ++ +L+ I+ LL PNP E L +++ EY R R
Sbjct: 101 LKRD--WTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 151
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 33 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGT 92
PD S N +H I G + +EGG F L L E+YP PK +F +HPNV G
Sbjct: 32 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 90
Query: 93 VCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQ 152
+CL IL + W PA+ ++ +L+ IQ LL PNP DP + + + A+ R
Sbjct: 91 ICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW 148
Query: 153 AKQY 156
+ Y
Sbjct: 149 TRLY 152
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 3 GGIARGRLAEERK--SWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFP 60
G + RG L R+ KN GF A L D + +L W I G T +EGG F
Sbjct: 13 GLVPRGSLLLRRQLAELNKNPVEGFSA---GLIDDN-DLYRWEVLIIGPPDTLYEGGVFK 68
Query: 61 LTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAIT 109
L F +DYP +PPK KF +HPNV +G VC+SIL+E + W P T
Sbjct: 69 AHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHT 128
Query: 110 VKQILVGIQDLLDQPNPADPAQTEGYHLFIQDA-AEYKRRV 149
V+ I++ + +L PN PA + + +D E+KR+V
Sbjct: 129 VETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 169
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 71/158 (44%), Gaps = 11/158 (6%)
Query: 2 SGGIARG----RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGG 57
SGG ARG RL +E + + G A PE S NL W TI G AGT +E
Sbjct: 23 SGGAARGPVGKRLQQELMTLMMSGDKGISAFPE-----SDNLFKWVGTIHGAAGTVYEDL 77
Query: 58 FFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI 117
+ L+L F YP P KF +HPNV G + L IL E W V+ IL+ I
Sbjct: 78 RYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALYDVRTILLSI 135
Query: 118 QDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155
Q LL +PN P T L+ A K +KQ
Sbjct: 136 QSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQ 173
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 42 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
W I G GT +EGG F L + DYP PPK KF +HPN+ +G +CL IL
Sbjct: 77 WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKH 136
Query: 101 DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQD 141
+ W PA+T++ L+ IQ +L P P DP E + I++
Sbjct: 137 E--WSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIEN 175
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 45 TIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNG 103
T G GT +EGG F + + +YP KPPK +F +HPN+ +G +CL IL N
Sbjct: 38 TFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR--NA 95
Query: 104 WRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKR 147
W P IT+K L+ +Q LL P P DP E +++D + +
Sbjct: 96 WSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 45 TIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNG 103
T G GT +EGG F + + +YP KPPK +F +HPN+ +G +CL IL N
Sbjct: 37 TFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NA 94
Query: 104 WRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKR 147
W P IT+K L+ +Q LL P P DP E +++D + +
Sbjct: 95 WSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
NL + TI G + +E G F L L+ +DYP + PK +F +HP + G + L +
Sbjct: 31 NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDV 90
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
L W PA+ ++ +L+ IQ LL PNP DP + +I++ K + R+ K Y
Sbjct: 91 LK--TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 43 HCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN--E 100
I G A T +E G F L + E YP +PP+ +F +HPN+ +G +CL +L
Sbjct: 37 RAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPP 96
Query: 101 DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
WRP++ + +L IQ L+ +PNP DP + F + + + RQ +++
Sbjct: 97 KGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKH 152
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
+L W I G T +EGG+F L F DYP PP +F +HPN+Y +G VC+SI
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 98 LN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQ------ 140
L+ W P V+ IL+ + LL++PN PA + ++ +
Sbjct: 96 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKG 155
Query: 141 DAAEYKRRVRQQA 153
EY +R+Q
Sbjct: 156 KDREYTDIIRKQV 168
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
+L W I G T +EGG+F L F DYP PP +F +HPN+Y +G VC+SI
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 98 LN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQ------ 140
L+ W P V+ IL+ + LL++PN PA + ++ +
Sbjct: 93 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKG 152
Query: 141 DAAEYKRRVRQQA 153
EY +R+Q
Sbjct: 153 KDREYTDIIRKQV 165
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 33 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGT 92
PD +N + C G ++ G F + + YP PPK K +HPN+ G
Sbjct: 31 PDDLLNFKLVICPDEGF----YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGN 86
Query: 93 VCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQ 152
VCL+IL ED W+P +T+ I+ G+Q L +PNP DP E + + +++ V++
Sbjct: 87 VCLNILRED--WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRS 144
Query: 153 AK 154
+
Sbjct: 145 XR 146
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 54 WEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 113
+ G L F+E YP +PPK + FHPN+ G VCL+IL ED W PA+ ++ I
Sbjct: 77 YNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRED--WSPALDLQSI 134
Query: 114 LVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 150
+ G+ L +PNP DP + L + E+ VR
Sbjct: 135 ITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 48 GKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRP 106
G GT +EGG + + + +DYP P F HPNV SG+VCL ++N+ W P
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ--TWTP 94
Query: 107 AITVKQIL-VGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPA 158
++ + V + LL PNP+DP ++ L ++D Y+ +V++ K Y +
Sbjct: 95 LYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYAS 147
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 33 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGT 92
PD +N + C G ++ G F + + YP PPK K +HPN+ G
Sbjct: 51 PDDLLNFKLVICPDEGF----YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGN 106
Query: 93 VCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQ 152
V L+IL ED W+P +T+ I+ G+Q L +PNP DP E + + +++ V++
Sbjct: 107 VALNILRED--WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRS 164
Query: 153 AK 154
+
Sbjct: 165 MR 166
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWH-CTIPGKAGTDWEGGFFPLTLH 64
A RL +E + RK F + NL+ W +P ++ G F + ++
Sbjct: 5 ASRRLMKELEEIRKCGMKNF----RNIQVDEANLLTWQGLIVPD--NPPYDKGAFRIEIN 58
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
F +YP KPPK F +HPN+ G VCL +++ +N W+PA Q++ + L++ P
Sbjct: 59 FPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQVIQSLIALVNDP 117
Query: 125 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
P P + + + +D ++ + + K+Y
Sbjct: 118 QPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 149
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWH-CTIPGKAGTDWEGGFFPLTLH 64
A RL +E + RK F + NL+ W +P ++ G F + ++
Sbjct: 3 ASRRLMKELEEIRKCGMKNF----RNIQVDEANLLTWQGLIVPD--NPPYDKGAFRIEIN 56
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
F +YP KPPK F +HPN+ G VCL +++ +N W+PA Q++ + L++ P
Sbjct: 57 FPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQVIQSLIALVNDP 115
Query: 125 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
P P + + + +D ++ + + K+Y
Sbjct: 116 QPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
Query: 5 IARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTI-PGKAGTDWEGGFFPLTL 63
+A R+ +E + +K P L N++VWH + P + + F L +
Sbjct: 1 MASMRVVKELEDLQKKPPPYL----RNLSSDDANVLVWHALLLPDQPPYHLKA--FNLRI 54
Query: 64 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
F +YP KPP KF +HPNV +G +CL I++ +N W+P Q+L + L+++
Sbjct: 55 SFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVNR 113
Query: 124 PNPADPAQTEGYHLFIQDAAEYKRRVRQ 151
PN +P + + L Q+ +++ +
Sbjct: 114 PNIREPLRMDLADLLTQNPELFRKNAEE 141
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
Query: 5 IARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTI-PGKAGTDWEGGFFPLTL 63
+A R+ +E + +K P L N++VWH + P + + F L +
Sbjct: 4 MASMRVVKELEDLQKKPPPYL----RNLSSDDANVLVWHALLLPDQPPYHLKA--FNLRI 57
Query: 64 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
F +YP KPP KF +HPNV +G +CL I++ +N W+P Q+L + L+++
Sbjct: 58 SFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVNR 116
Query: 124 PNPADPAQTEGYHLFIQDAAEYKRRVRQ 151
PN +P + + L Q+ +++ +
Sbjct: 117 PNIREPLRMDLADLLTQNPELFRKNAEE 144
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 48 GKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRP 106
G GT +EGG + + + + YP K P F FHPN+ SGTVCL ++N+ W
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT--WTA 116
Query: 107 AITVKQILVG-IQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+ I + LL PNP DP + +++ EYK+++++ ++Y
Sbjct: 117 LYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKY 167
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 48 GKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRP 106
G GT +E G + L + DYP K P F HPNV SG+VCL ++N+ W P
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ--TWTP 103
Query: 107 AITVKQIL-VGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
++ I V + LL PNP+DP + HL D + +R+ +
Sbjct: 104 MYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTH 154
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 9 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSED 68
RL +E + + + P G +++ + ++ W + G GT +EG F L FS
Sbjct: 26 RLQKELLALQNDPPPGMTLNEKSVQN---SITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 82
Query: 69 YPSKPPKCKFPQGFF--HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
YP P+ F HP+VY +G +CLSIL ED W PA++V+ + + I +L
Sbjct: 83 YPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED--WSPALSVQSVCLSIISMLS 136
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 54 WEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 109
++GG F + Y PPK K +HPN+ +G +CLS+L E + GW P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 110 VKQILVGIQDLL-DQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+K ++ G+ L D N DP E ++D +++ +V K+Y
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY 165
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 54 WEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 109
++GG F + Y PPK K +HPN+ +G +CLS+L E + GW P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 110 VKQILVGIQDLL-DQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
+K ++ G+ L D N DP E ++D +++ +V K+Y
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY 165
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 39 LMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTV 93
L + I G A T + G F ++F +DYPS PP F+PN+Y G V
Sbjct: 109 LDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKV 168
Query: 94 CLSILNEDNG-----WRPAI-TVKQILVGIQDLL--DQPNPADPA--QTEGYHLFIQDAA 143
CLSILN +G W P + Q+LV +Q L+ +P +P ++ G Q +
Sbjct: 169 CLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSR 228
Query: 144 EYKRRVRQQAKQYPAL 159
EY +RQ ++ L
Sbjct: 229 EYDGNIRQATVKWAXL 244
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 46 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 117
Query: 105 RPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
A+T++ +L+ +Q LL P DP + + Q+ +K+ R A Y
Sbjct: 118 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 169
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 46 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 45 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 102
Query: 105 RPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
A+T++ +L+ +Q LL P DP + + Q+ +K+ R A Y
Sbjct: 103 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 154
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 46 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 101
Query: 105 RPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
A+T++ +L+ +Q LL P DP + + Q+ +K+ R A Y
Sbjct: 102 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 153
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 46 IPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 47 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 104
Query: 105 RPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
A+T++ +L+ +Q LL P DP + + Q+ +K+ R A Y
Sbjct: 105 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 156
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 38 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLS 96
N I G T +EGG + L + E YP PPK +F +HPN+ +G +CL
Sbjct: 88 NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 147
Query: 97 ILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156
IL + W A+T++ +L+ +Q LL P DP + + Q+ +K+ R A Y
Sbjct: 148 ILKDQ--WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 205
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 10 LAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDY 69
L E + + N G E+ D + L W CTI G+ GT +E + LT+ ++Y
Sbjct: 31 LDELERGQKGNVSEGVSFGLESADD--ITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 88
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPAD 128
P PP KF V G V + L+ W T++ IL+ + Q++L N
Sbjct: 89 PDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRL 148
Query: 129 PAQTEG 134
P EG
Sbjct: 149 PQPNEG 154
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 10 LAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDY 69
L E + + N G E+ D + L W CTI G+ GT +E + LT+ ++Y
Sbjct: 27 LDELERGQKGNVSEGVSFGLESADD--ITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 84
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPAD 128
P PP KF V G V + L+ W T++ IL+ + Q++L N
Sbjct: 85 PDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRL 144
Query: 129 PAQTEG 134
P EG
Sbjct: 145 PQPNEG 150
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 4 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTL 63
G A R+ +E ++ N P TL N+ +W G T + + L +
Sbjct: 5 GNANYRIQKELHNFLNNPPINC-----TLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 64 HFSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
F +DYP KPP F Q H +VY +G +CLS+L +D + P++++ +++ I +L
Sbjct: 60 IFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDD--YNPSLSISGLVLSIISMLS 117
Query: 123 Q 123
Sbjct: 118 S 118
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 4 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTL 63
G A R+ +E ++ KN P T+ N+ +W G T + + + +
Sbjct: 19 GNANYRIQKELNNFLKNPPINC-----TIDVHPSNIRIWIVQYVGLENTIYANEVYKIKI 73
Query: 64 HFSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
F ++YP KPP F Q H +VY +G +CLS+L +D + P++++ +++ I +L
Sbjct: 74 IFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDD--YNPSLSISGLILSIISMLS 131
Query: 123 Q 123
Sbjct: 132 S 132
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHF 65
A RL ++ +K+ A+P LP N++ WH + G T +EGG++ L F
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEP--LPS---NILEWHYVVRGPEMTPYEGGYYHGKLIF 69
Query: 66 SEDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLD 122
++P KPP P G F N +CLSI + + W PA +V IL G+ +
Sbjct: 70 PREFPFKPPSIYMITPNGRFKCNT----RLCLSITDFHPDTWNPAWSVSTILTGLLSFMV 125
Query: 123 QPNPA 127
+ P
Sbjct: 126 EKGPT 130
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 33 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQ-GFFHPNV-YPS 90
P +L W I G + T +E F + + YP PPK F Q H NV +
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSAT 100
Query: 91 GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTE-GYHLFIQDAAEYKRRV 149
G +CL+IL + W P + + + LL +P P + G + D + Y+ V
Sbjct: 101 GEICLNILKPEE-WTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQGIV 159
Query: 150 R 150
+
Sbjct: 160 K 160
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 33 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQ-GFFHPNV-YPS 90
P +L W I G + T +E F + + YP PPK F Q H NV +
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 91 GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTE-GYHLFIQDAAEYKRRV 149
G +CL+IL + W P + + + LL +P P + G + D + Y+ V
Sbjct: 101 GEICLNILKPEE-WTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQGIV 159
Query: 150 R 150
+
Sbjct: 160 K 160
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 33 PDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQ-GFFHPNV-YPS 90
P +L W I G + T +E F + + YP PPK F Q H NV +
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 91 GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTE-GYHLFIQDAAEYKRRV 149
G +CL+IL + W P + + + LL +P P + G + D + Y+ V
Sbjct: 101 GEICLNILKPEE-WTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIV 159
Query: 150 R 150
+
Sbjct: 160 K 160
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 56 GGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILV 115
G + L++ FS+DYP +PP +F + P V G +C ++N+ W P ++
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND--FWTPDQHASDVIK 125
Query: 116 GIQDLL------DQPNPADPAQTEGYHLFIQDAAEYKRRVR 150
+ D + + + +P F QD A RR R
Sbjct: 126 LVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRRGR 166
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 37 VNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLS 96
+ + W+ TI G ++ E + L++ +YP PPK F P V P+ +
Sbjct: 37 ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQT 96
Query: 97 ILNEDNGWRPAITVKQILVGIQDLLDQP 124
+ W+ A T++ +L+ ++ + P
Sbjct: 97 DFHTLRDWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 37 VNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLS 96
+ + W+ TI G ++ E + L++ +YP PPK F P V P+ +
Sbjct: 36 ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQT 95
Query: 97 ILNEDNGWRPAITVKQILVGIQDLLDQP 124
+ W+ A T++ +L+ ++ + P
Sbjct: 96 DFHTLRDWKRAYTMETLLLDLRKEMATP 123
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 34 DGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTV 93
D + L W I G T +E + L + YP PP +F V S V
Sbjct: 63 DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV 122
Query: 94 ----CLSILNEDNGWRPAITVKQILVGIQDLL 121
+S+L + W+ + ++K +L ++ L+
Sbjct: 123 VDPRAISVLAK---WQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 9 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSED 68
RL EE + +K G V+ D + L W I G T +E + L +
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLE-DDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 87
Query: 69 YPSKPPKCKFPQGFFHPNVYPSGTVC----LSILNEDNGWRPAITVKQILVGIQDLL 121
YP PP +F V S V +S+L + W+ + ++K +L ++ L+
Sbjct: 88 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK---WQNSYSIKVVLQELRRLM 141
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 34 DGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV-YPSGT 92
D + L W I G T++E + L + YP PP +F + SG
Sbjct: 33 DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM 92
Query: 93 VCLSILNEDNGWRPAITVKQILVGIQDLL 121
V + W+ + ++K +L ++ L+
Sbjct: 93 VDARSIPVLAKWQNSYSIKVVLQELRRLM 121
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 34 DGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV-YPSGT 92
D + L W I G T++E + L + YP PP +F + SG
Sbjct: 32 DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM 91
Query: 93 VCLSILNEDNGWRPAITVKQILVGIQDLL 121
V + W+ + ++K +L ++ L+
Sbjct: 92 VDARSIPVLAKWQNSYSIKVVLQELRRLM 120
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 9 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSED 68
RL EE + +K G V+ D + L W I G T +E + L +
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLE-DDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPK 69
Query: 69 YPSKPPKCKFPQGFFHPNVYPSGTVC----LSILNEDNGWRPAITVKQILVGIQDLL 121
YP PP +F V S V +S+L + W+ + ++K +L ++ L+
Sbjct: 70 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK---WQNSYSIKVVLQELRRLM 123
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 9 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSED 68
RL EE + +K G V+ D + L W I G T++E + L +
Sbjct: 19 RLLEELEEGQKGVGDGTVSW-GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 77
Query: 69 YPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
YP PP +F + SG V + W+ + ++K +L ++ L+
Sbjct: 78 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 131
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 34 DGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV-YPSGT 92
D + L W I G T++E + L + YP PP +F + SG
Sbjct: 38 DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM 97
Query: 93 VCLSILNEDNGWRPAITVKQILVGIQDLL 121
V + W+ + ++K +L ++ L+
Sbjct: 98 VDARSIPVLAKWQNSYSIKVVLQELRRLM 126
>pdb|3TKN|A Chain A, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
pdb|3TKN|D Chain D, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
pdb|3TKN|G Chain G, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
Length = 452
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD--L 120
H+S D PK + FHP Y C+ +L ED+ IT+ IL + +
Sbjct: 112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDS--CIVVLKEDD----TITMFDILNSQEKPIV 165
Query: 121 LDQPNPA 127
L++PN +
Sbjct: 166 LNKPNNS 172
>pdb|3PBP|A Chain A, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|D Chain D, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|G Chain G, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|J Chain J, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
Length = 452
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 63 LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
H+S D PK + FHP Y C+ +L ED+
Sbjct: 112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDS--CIVVLKEDD 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,850,747
Number of Sequences: 62578
Number of extensions: 261514
Number of successful extensions: 673
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 122
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)