Query 031379
Match_columns 160
No_of_seqs 136 out of 1113
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 13:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 3.2E-56 6.9E-61 308.8 14.9 146 6-158 2-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.1E-55 2.4E-60 312.6 17.7 152 1-158 1-152 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 1.5E-53 3.2E-58 287.8 14.9 148 1-156 1-148 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 1.5E-51 3.2E-56 294.6 18.6 148 1-158 1-148 (152)
5 KOG0424 Ubiquitin-protein liga 100.0 1.7E-51 3.6E-56 281.7 16.8 157 1-158 1-157 (158)
6 PLN00172 ubiquitin conjugating 100.0 1.3E-50 2.9E-55 288.5 18.3 146 6-158 2-147 (147)
7 KOG0425 Ubiquitin-protein liga 100.0 1.6E-48 3.6E-53 270.6 15.8 154 1-158 1-165 (171)
8 KOG0426 Ubiquitin-protein liga 100.0 2.7E-46 5.9E-51 252.7 15.1 152 1-157 1-163 (165)
9 KOG0418 Ubiquitin-protein liga 100.0 3.6E-46 7.9E-51 266.2 13.9 150 1-159 1-154 (200)
10 PF00179 UQ_con: Ubiquitin-con 100.0 9.8E-45 2.1E-49 257.0 15.4 140 9-153 1-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 5.6E-44 1.2E-48 253.4 16.4 140 8-153 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.9E-43 4.1E-48 251.8 17.6 144 8-157 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 3.4E-42 7.5E-47 235.9 12.2 144 4-155 28-171 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 2.3E-41 5E-46 230.7 14.5 148 6-159 3-150 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 5E-38 1.1E-42 221.0 11.4 144 6-159 4-149 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 1.4E-37 3.1E-42 219.1 12.6 148 4-157 27-174 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 2.6E-35 5.7E-40 207.8 8.0 147 6-159 11-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 1.4E-32 3.1E-37 185.8 11.9 120 4-131 14-135 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 5.2E-32 1.1E-36 197.3 14.1 120 1-129 1-125 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 1.7E-25 3.6E-30 163.8 13.2 144 8-159 22-171 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 5.6E-23 1.2E-27 152.8 10.1 112 4-125 10-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 2.5E-18 5.5E-23 149.2 7.0 117 8-129 854-979 (1101)
23 KOG0896 Ubiquitin-conjugating 99.7 3.1E-16 6.7E-21 107.1 7.2 118 5-123 5-123 (138)
24 KOG0895 Ubiquitin-conjugating 99.6 9E-16 1.9E-20 133.5 10.3 115 5-124 282-405 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 98.8 2.1E-08 4.5E-13 70.3 7.8 67 55-123 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.6 8.4E-08 1.8E-12 64.1 5.7 92 60-153 14-110 (122)
27 PF05743 UEV: UEV domain; Int 98.6 3E-07 6.5E-12 63.4 7.5 79 37-122 30-116 (121)
28 KOG2391 Vacuolar sorting prote 98.1 3E-05 6.5E-10 61.3 9.0 83 36-125 49-139 (365)
29 PF08694 UFC1: Ubiquitin-fold 97.8 1.2E-05 2.5E-10 56.1 2.1 97 6-114 25-135 (161)
30 KOG3357 Uncharacterized conser 97.1 0.00073 1.6E-08 46.5 3.8 96 6-113 28-137 (167)
31 PF05773 RWD: RWD domain; Int 96.5 0.022 4.8E-07 37.9 7.4 69 7-81 3-73 (113)
32 smart00591 RWD domain in RING 96.0 0.13 2.8E-06 33.8 9.1 26 56-81 40-65 (107)
33 PF14457 Prok-E2_A: Prokaryoti 95.6 0.023 5E-07 41.1 4.5 63 60-123 56-126 (162)
34 PF14462 Prok-E2_E: Prokaryoti 95.3 0.17 3.7E-06 34.8 7.7 82 40-122 24-120 (122)
35 PF09765 WD-3: WD-repeat regio 92.1 0.36 7.8E-06 38.2 5.2 85 7-121 101-186 (291)
36 KOG4018 Uncharacterized conser 89.5 1.5 3.3E-05 33.0 6.1 62 10-78 7-70 (215)
37 PF14460 Prok-E2_D: Prokaryoti 88.1 0.92 2E-05 33.1 4.2 45 80-129 90-137 (175)
38 KOG0309 Conserved WD40 repeat- 81.7 7.3 0.00016 34.9 7.2 66 8-80 423-490 (1081)
39 PF06113 BRE: Brain and reprod 79.9 6.4 0.00014 31.8 5.9 61 53-121 61-124 (333)
40 TIGR03737 PRTRC_B PRTRC system 76.5 5.4 0.00012 30.5 4.4 44 80-129 131-178 (228)
41 smart00340 HALZ homeobox assoc 59.2 13 0.00027 20.6 2.4 16 6-21 20-35 (44)
42 cd00421 intradiol_dioxygenase 52.6 21 0.00046 25.1 3.4 24 56-79 65-89 (146)
43 cd07981 TAF12 TATA Binding Pro 52.5 36 0.00077 20.9 4.0 44 116-159 6-49 (72)
44 KOG0744 AAA+-type ATPase [Post 52.4 21 0.00046 29.2 3.7 69 37-126 171-250 (423)
45 cd03457 intradiol_dioxygenase_ 47.9 27 0.00058 25.9 3.4 24 56-79 86-109 (188)
46 PF03366 YEATS: YEATS family; 45.6 78 0.0017 20.1 5.1 43 40-84 2-44 (84)
47 KOG0177 20S proteasome, regula 45.1 42 0.00092 24.9 4.0 31 90-122 135-165 (200)
48 PF06113 BRE: Brain and reprod 44.0 29 0.00064 28.1 3.3 23 58-80 307-329 (333)
49 cd03459 3,4-PCD Protocatechuat 41.9 39 0.00084 24.3 3.4 24 56-79 72-100 (158)
50 KOG4445 Uncharacterized conser 41.7 36 0.00077 27.3 3.4 25 57-81 45-69 (368)
51 cd05845 Ig2_L1-CAM_like Second 41.6 66 0.0014 20.9 4.2 26 54-81 16-41 (95)
52 PF13950 Epimerase_Csub: UDP-g 40.0 33 0.00072 20.4 2.4 19 103-121 37-55 (62)
53 KOG0662 Cyclin-dependent kinas 34.3 45 0.00097 25.1 2.7 57 71-127 167-225 (292)
54 PF00845 Gemini_BL1: Geminivir 34.1 1.1E+02 0.0023 23.9 4.8 46 38-83 101-154 (276)
55 KOG3285 Spindle assembly check 33.6 1E+02 0.0022 22.8 4.4 56 5-76 119-174 (203)
56 PF12018 DUF3508: Domain of un 32.5 45 0.00097 26.2 2.7 32 128-159 237-268 (281)
57 smart00803 TAF TATA box bindin 31.1 62 0.0013 19.5 2.6 31 129-159 19-49 (65)
58 PF12652 CotJB: CotJB protein; 30.6 1.4E+02 0.003 18.8 4.2 33 127-159 24-56 (78)
59 PF00779 BTK: BTK motif; Inte 28.8 19 0.00041 18.7 0.0 14 82-95 2-16 (32)
60 TIGR02423 protocat_alph protoc 28.7 78 0.0017 23.5 3.3 24 56-79 96-124 (193)
61 PF03847 TFIID_20kDa: Transcri 28.2 1.1E+02 0.0023 18.7 3.3 43 116-158 4-46 (68)
62 PF06152 Phage_min_cap2: Phage 27.8 2E+02 0.0043 23.5 5.8 59 41-110 226-293 (361)
63 PF03037 KMP11: Kinetoplastid 27.8 1.2E+02 0.0025 18.9 3.4 34 120-157 30-63 (90)
64 cd03463 3,4-PCD_alpha Protocat 27.2 88 0.0019 23.1 3.3 23 57-79 93-120 (185)
65 COG0544 Tig FKBP-type peptidyl 26.0 1.8E+02 0.0038 24.7 5.2 14 59-72 211-224 (441)
66 KOG4064 Cysteine dioxygenase C 24.6 1E+02 0.0022 22.2 3.1 52 103-158 6-62 (196)
67 cd01019 ZnuA Zinc binding prot 24.6 77 0.0017 24.8 2.8 50 103-158 123-172 (286)
68 cd01145 TroA_c Periplasmic bin 24.4 80 0.0017 23.2 2.7 49 103-157 110-158 (203)
69 COG3140 Uncharacterized protei 24.1 1.2E+02 0.0025 17.9 2.7 24 1-24 28-51 (60)
70 COG3866 PelB Pectate lyase [Ca 23.9 1.3E+02 0.0029 24.3 3.9 39 41-79 198-239 (345)
71 PF11333 DUF3135: Protein of u 23.7 1.7E+02 0.0038 18.6 3.8 24 132-155 7-30 (83)
72 KOG1047 Bifunctional leukotrie 23.5 85 0.0018 27.4 2.9 29 52-81 248-279 (613)
73 KOG4274 Positive cofactor 2 (P 22.9 4.7E+02 0.01 23.2 7.1 47 60-128 662-708 (742)
74 KOG0700 Protein phosphatase 2C 22.8 2.2E+02 0.0047 23.8 5.0 72 10-93 250-332 (390)
75 PF12065 DUF3545: Protein of u 21.5 66 0.0014 19.2 1.4 12 7-18 36-47 (59)
76 PF15572 Imm26: Immunity prote 21.3 91 0.002 20.5 2.2 26 49-79 7-32 (96)
77 PRK15486 hpaC 4-hydroxyphenyla 21.3 60 0.0013 23.6 1.4 69 10-100 6-77 (170)
78 cd01020 TroA_b Metal binding p 21.1 1.1E+02 0.0025 23.5 3.1 49 103-157 97-145 (264)
79 TIGR02296 HpaC 4-hydroxyphenyl 20.9 62 0.0013 22.9 1.4 30 71-100 36-68 (154)
80 PF09280 XPC-binding: XPC-bind 20.5 1.7E+02 0.0037 17.3 3.1 22 129-150 33-54 (59)
81 KOG1814 Predicted E3 ubiquitin 20.3 88 0.0019 26.2 2.3 20 61-80 78-98 (445)
82 COG1225 Bcp Peroxiredoxin [Pos 20.0 1.5E+02 0.0033 21.3 3.3 33 84-120 123-155 (157)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-56 Score=308.77 Aligned_cols=146 Identities=40% Similarity=0.792 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccc
Q 031379 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHP 85 (160)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~Hp 85 (160)
+.+||.+|++++.+++++|+++.+.. +|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~-----dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHP 76 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVG-----DNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHP 76 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCC-----CceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccC
Confidence 46799999999999999999998665 4999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCC
Q 031379 86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPA 158 (160)
Q Consensus 86 ni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~ 158 (160)
||++.|+||+++|.. .|+|+.+|.+||.+|+++|.+|++++|++++++.+|+.|+++|++.||+|++|||.
T Consensus 77 NI~~~G~IclDILk~--~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 77 NIDSNGRICLDILKD--QWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred CcCccccchHHhhhc--cCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999 79999999999999999999999999999999999999999999999999999996
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-55 Score=312.62 Aligned_cols=152 Identities=47% Similarity=0.812 Sum_probs=146.1
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecc
Q 031379 1 MSGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 Ms~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t 80 (160)
|++..+.+||++|+++++++++.++++.+... +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d----~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t 76 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDD----DNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTT 76 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCC----CcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecc
Confidence 45345999999999999999999999999874 49999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCC
Q 031379 81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPA 158 (160)
Q Consensus 81 ~i~Hpni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~ 158 (160)
+|||||||.+|+||+++|.+ .|+|+++|.+||.+|+++|.+|+.++|+|.+||.+|++|+++|.++||+++++|+.
T Consensus 77 ~i~HPNV~~~G~vCLdIL~~--~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 77 KIFHPNVDPSGNVCLDILKD--RWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcCCCcCCCCCChhHHHhC--CCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998 99999999999999999999999999999999999999999999999999999985
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-53 Score=287.77 Aligned_cols=148 Identities=45% Similarity=0.831 Sum_probs=144.5
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecc
Q 031379 1 MSGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 Ms~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t 80 (160)
|| +.|.|||.+|+++++++++.|++..|+.+ |+++|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|++
T Consensus 1 Ms-tpArrrLmrDfkrlqedpp~gisa~P~~~-----niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs 74 (152)
T KOG0419|consen 1 MS-TPARRRLMRDFKRLQEDPPAGISAAPVEN-----NIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS 74 (152)
T ss_pred CC-chHHHHHHHHHHHhhcCCCCCccCCCCcc-----ceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee
Confidence 88 88999999999999999999999999884 9999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHc
Q 031379 81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156 (160)
Q Consensus 81 ~i~Hpni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~ 156 (160)
++||||||.+|.+|+++|.. .|+|.|++..||.+||+||.+|++++|+|.+||.+|.+|+++|.+.+++.+.+.
T Consensus 75 ~mFHPNvya~G~iClDiLqN--rWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 75 KMFHPNVYADGSICLDILQN--RWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred eccCCCcCCCCcchHHHHhc--CCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 99999999999999999998 899999999999999999999999999999999999999999999999998765
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.5e-51 Score=294.61 Aligned_cols=148 Identities=33% Similarity=0.696 Sum_probs=143.1
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecc
Q 031379 1 MSGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 Ms~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t 80 (160)
|| +.|||++|+++++++++.|+.+.+.. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 1 ~~---~~kRl~~E~~~l~~~~~~~i~~~~~~-----~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t 72 (152)
T PTZ00390 1 MS---ISKRIEKETQNLANDPPPGIKAEPDP-----GNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLT 72 (152)
T ss_pred Cc---HHHHHHHHHHHHHhCCCCCeEEEECC-----CCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEec
Confidence 66 78999999999999999999998765 49999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCC
Q 031379 81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPA 158 (160)
Q Consensus 81 ~i~Hpni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~ 158 (160)
++|||||+.+|.||+++|.. .|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|++.|+++||+|+++||.
T Consensus 73 ~i~HPNV~~~G~iCl~iL~~--~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 73 KIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CCeeceECCCCeEECccCcc--cCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987 89999999999999999999999999999999999999999999999999999986
No 5
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-51 Score=281.69 Aligned_cols=157 Identities=68% Similarity=1.227 Sum_probs=154.0
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecc
Q 031379 1 MSGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 Ms~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t 80 (160)
|| ++++.||++|-+.+.++.+.|+++.|..+.||..|++.|+|.|.|++||+||||.|.+++.||++||.+||+++|.+
T Consensus 1 ~s-~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~ 79 (158)
T KOG0424|consen 1 MS-GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKP 79 (158)
T ss_pred Cc-chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCC
Confidence 78 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCC
Q 031379 81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPA 158 (160)
Q Consensus 81 ~i~Hpni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~ 158 (160)
++||||||.+|.||+++|.+..+|+|++||.+||..|++||.+||..+|+|.+|...|.+|+.+|+++||.++++||+
T Consensus 80 pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 80 PLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999996679999999999999999999999999999999999999999999999999999986
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-50 Score=288.52 Aligned_cols=146 Identities=36% Similarity=0.748 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccc
Q 031379 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHP 85 (160)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~Hp 85 (160)
|.+||++|+++++++++.|+.+.+.. +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~-----~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 76 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSD-----ENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHP 76 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECC-----CChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccc
Confidence 37999999999999999999998765 4999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCC
Q 031379 86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPA 158 (160)
Q Consensus 86 ni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~ 158 (160)
||+.+|.||+++|.+ .|+|++|+.+||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|+++||.
T Consensus 77 Nv~~~G~iCl~il~~--~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 77 NINSNGSICLDILRD--QWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred eECCCCEEEcccCcC--CCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999987 89999999999999999999999999999999999999999999999999999983
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-48 Score=270.61 Aligned_cols=154 Identities=32% Similarity=0.638 Sum_probs=144.3
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecc
Q 031379 1 MSGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 Ms~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t 80 (160)
|++..+..-|+++|++|++++..|+.+..+++ .|+++|.|.|+||++|.|+||.|+..+.||.+||.+||+++|.|
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~----~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s 76 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDD----SDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS 76 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccC----CceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh
Confidence 44445778899999999999999999887765 79999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCcEeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHH
Q 031379 81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRV 149 (160)
Q Consensus 81 ~i~Hpni~~~G~ic~~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~ 149 (160)
+|||||||++|++|++||.+ .+.|.|.+|+++||++|.+||.+||.++|+|-|||..|++|+++|.++|
T Consensus 77 ~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV 156 (171)
T KOG0425|consen 77 KMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKV 156 (171)
T ss_pred hhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHH
Confidence 99999999999999999976 2689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 031379 150 RQQAKQYPA 158 (160)
Q Consensus 150 r~~~~k~a~ 158 (160)
+++|++..+
T Consensus 157 ~r~vr~s~e 165 (171)
T KOG0425|consen 157 RRCVRRSQE 165 (171)
T ss_pred HHHHHHHHH
Confidence 999998654
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-46 Score=252.72 Aligned_cols=152 Identities=37% Similarity=0.732 Sum_probs=145.7
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecc
Q 031379 1 MSGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 Ms~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t 80 (160)
|+ +.|+|||.+||+++..+++.|+.+.|... +|+++|.+.|.||++|+|+||.|..++.||.+||.+||+.+|..
T Consensus 1 m~-~~AlkRLm~EykqLt~~~P~GIvAgP~~E----dnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc 75 (165)
T KOG0426|consen 1 MA-GTALKRLMAEYKQLTLNPPEGIVAGPINE----DNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC 75 (165)
T ss_pred Cc-hhHHHHHHHHHHHHccCCCCcceeCCCCc----cceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec
Confidence 78 89999999999999999999999998776 79999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCcEeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHH
Q 031379 81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRV 149 (160)
Q Consensus 81 ~i~Hpni~~~G~ic~~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~ 149 (160)
.+||||||.+|++|+++|.. .+.|+|.++++.||.++.++|.+|+-++.+|.+|+.++++|+++|++.|
T Consensus 76 ~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~ 155 (165)
T KOG0426|consen 76 EMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIA 155 (165)
T ss_pred ccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHH
Confidence 99999999999999999964 2689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcC
Q 031379 150 RQQAKQYP 157 (160)
Q Consensus 150 r~~~~k~a 157 (160)
|..++|.-
T Consensus 156 ~~lvrKtL 163 (165)
T KOG0426|consen 156 KRLVRKTL 163 (165)
T ss_pred HHHHHHhh
Confidence 99998853
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-46 Score=266.17 Aligned_cols=150 Identities=31% Similarity=0.586 Sum_probs=143.9
Q ss_pred CChHHHHHHHHHHHHHHHhcC---CCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeE
Q 031379 1 MSGGIARGRLAEERKSWRKNH---PHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCK 77 (160)
Q Consensus 1 Ms~~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~ 77 (160)
|| + +.+||++|++++.+++ ..|+.+....+ |+.+..+.|.||+|||||||+|.+.|++|++|||+||+|+
T Consensus 1 m~-~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~-----~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~ 73 (200)
T KOG0418|consen 1 MS-N-AFKRINREQKEVLDDPEISQAGIIVEMVNE-----NLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK 73 (200)
T ss_pred Cc-c-HHHHHHHHHHHhccChhhhhcceEEEEccC-----ChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence 77 6 8999999999999987 78999988773 9999999999999999999999999999999999999999
Q ss_pred eccCcccccccC-CCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHc
Q 031379 78 FPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 156 (160)
Q Consensus 78 f~t~i~Hpni~~-~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~ 156 (160)
|.|+||||||++ +|.||+++|.+ .|.+++|+.++|.+||++|..|++.+|.+...|++|.+|++.|.+.||.|+..|
T Consensus 74 F~TkIwHPnVSs~tGaICLDilkd--~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~f 151 (200)
T KOG0418|consen 74 FITKIWHPNVSSQTGAICLDILKD--QWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEF 151 (200)
T ss_pred eeeeeecCCCCcccccchhhhhhc--ccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999995 89999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 031379 157 PAL 159 (160)
Q Consensus 157 a~~ 159 (160)
|+-
T Consensus 152 A~~ 154 (200)
T KOG0418|consen 152 AGG 154 (200)
T ss_pred hCC
Confidence 863
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=9.8e-45 Score=256.95 Aligned_cols=140 Identities=43% Similarity=0.838 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 031379 9 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVY 88 (160)
Q Consensus 9 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~Hpni~ 88 (160)
||++|+++++++++.|+.+.+..+ +|+.+|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~ 76 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSED----DNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID 76 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEEST----TETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-
T ss_pred CHHHHHHHHhhCCCCCEEEEECCC----CChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc
Confidence 899999999999999999998873 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q 031379 89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQA 153 (160)
Q Consensus 89 ~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~ 153 (160)
.+|.||+++|..+ .|+|++++.+||.+|+++|.+|+.++++|.+|+.+|++|+++|.++||+|.
T Consensus 77 ~~G~icl~~l~~~-~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 77 ENGRICLDILNPE-SWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp TTSBBGHGGGTTT-TC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred ccccchhhhhhcc-cCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 9999999999862 599999999999999999999999999999999999999999999999984
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.6e-44 Score=253.39 Aligned_cols=140 Identities=44% Similarity=0.872 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccc
Q 031379 8 GRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV 87 (160)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~Hpni 87 (160)
|||++|+++++++++.|+++.+.. +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~-----~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV 76 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVE-----ENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNV 76 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECC-----CChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCC
Confidence 799999999999999999998876 399999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q 031379 88 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQA 153 (160)
Q Consensus 88 ~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~ 153 (160)
+.+|.||++++... .|+|++++.+||.+|+++|.+|+.++++|.+|+.+|++|+++|.++|+.|+
T Consensus 77 ~~~G~icl~~l~~~-~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 77 DENGKICLSILKTH-GWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCCCCCchhhcCCC-CcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 99999999999872 499999999999999999999999999999999999999999999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.9e-43 Score=251.77 Aligned_cols=144 Identities=44% Similarity=0.807 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccc
Q 031379 8 GRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNV 87 (160)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~Hpni 87 (160)
+||++|+++++++++.|+++.+..+ +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.++++||||
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~----~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i 76 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDE----DNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNV 76 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCC----CChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeE
Confidence 5999999999999999999887753 489999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCCC-CCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcC
Q 031379 88 YPSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYP 157 (160)
Q Consensus 88 ~~~G~ic~~~l~-~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a 157 (160)
+++|.||++++. + +|+|++++.+||.+|+++|.+|+.++++|.+|+.+|.+|++.|+++||++++||+
T Consensus 77 ~~~G~icl~~l~~~--~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 77 DSSGEICLDILKQE--KWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCCCCEehhhcCCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999998 5 8999999999999999999999999999999999999999999999999999985
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-42 Score=235.86 Aligned_cols=144 Identities=38% Similarity=0.633 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCcc
Q 031379 4 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~ 83 (160)
....+||++|+..|.-...+||++.|.. +|++.|.++|.||++|+|+|-.|++.+.||.+||+.||+|+|+|++|
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~-----dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~ 102 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPES-----DNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCF 102 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcCc-----CceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecccc
Confidence 4568999999999999999999998877 49999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHH
Q 031379 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 155 (160)
Q Consensus 84 Hpni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k 155 (160)
|||||..|.||++||.+ .|+..+.+.+||.+||++|-+|+.++|+|..||++.. |.++|.+.+.+..++
T Consensus 103 HPNVD~~GnIcLDILkd--KWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 103 HPNVDLSGNICLDILKD--KWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred CCCccccccchHHHHHH--HHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 99999999999999998 8999999999999999999999999999999999997 999999998876654
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-41 Score=230.70 Aligned_cols=148 Identities=30% Similarity=0.582 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccc
Q 031379 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHP 85 (160)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~Hp 85 (160)
+.+||++|+..+++++...+.-... ++.|++.|.+.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~----~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHp 77 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEV----DEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHP 77 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhc----ccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccC
Confidence 8999999999999998775442222 2269999999999 8999999999999999999999999999999999999
Q ss_pred cccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCCC
Q 031379 86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPAL 159 (160)
Q Consensus 86 ni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~~ 159 (160)
|||+.|.+|+.++.. ++|.|++..++||.+|..++.+|+++.|++.|+|..|.+|+..|.++|.++++||+..
T Consensus 78 NVDe~gqvClPiis~-EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 78 NVDEKGQVCLPIISA-ENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred CCCCCCceeeeeeec-ccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 999999999999987 4999999999999999999999999999999999999999999999999999999864
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-38 Score=221.00 Aligned_cols=144 Identities=26% Similarity=0.583 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccc
Q 031379 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHP 85 (160)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~Hp 85 (160)
..||+..|...|.... ..+.... +++.+++|.+.||.+|||+||++++++.+|++||++.|.|.|+++||||
T Consensus 4 ~~rRid~Dv~KL~~s~---yeV~~in-----d~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHP 75 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMSD---YEVTIIN-----DGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHP 75 (189)
T ss_pred cccchhhHHHHHHhcC---CeEEEec-----CcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCC
Confidence 5789999988776542 2333333 3699999999999999999999999999999999999999999999999
Q ss_pred cccC-CCcEeecCCCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCCC
Q 031379 86 NVYP-SGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPAL 159 (160)
Q Consensus 86 ni~~-~G~ic~~~l~~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~~ 159 (160)
||+. +|.||++.++. .|+|.+.+..|+.. |-.||..||+.+|+|.+||.+|..++++|++++|++++|||..
T Consensus 76 NIDe~SGsVCLDViNQ--tWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 76 NIDEASGSVCLDVINQ--TWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred CchhccCccHHHHHhh--hhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 9996 89999999998 89999999999985 7788899999999999999999999999999999999999963
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=219.13 Aligned_cols=148 Identities=30% Similarity=0.526 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCcc
Q 031379 4 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~ 83 (160)
+.++-||++|+.++ +.+++++.......++ -+..+.+++|. |+++.|.||.|.|.+.+|+.||++||+|.++|++|
T Consensus 27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d-~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDD-LNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred cHHHHHHHhhhhhc--cCCCccccccccCCcc-cccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 56778888888866 5666666443332222 22336999999 99999999999999999999999999999999999
Q ss_pred cccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcC
Q 031379 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYP 157 (160)
Q Consensus 84 Hpni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a 157 (160)
|||||.+|.||++||++ +|+|+.++.+|+.+|+.+|.+|+++||+|.+||..+.+|++.|+..||+....++
T Consensus 103 HPNId~~GnVCLnILRe--dW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 103 HPNIDLDGNVCLNILRE--DWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred cCCcCCcchHHHHHHHh--cCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 99999999999999999 8999999999999999999999999999999999999999999999999887664
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-35 Score=207.79 Aligned_cols=147 Identities=30% Similarity=0.584 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccc
Q 031379 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHP 85 (160)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~Hp 85 (160)
-+|.|.+|++.+...++.||.+.+.+ .|+....+.|.||.||||++|.|++.+.+..+||.+||+-.|+|+||||
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~Ne-----eD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHP 85 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNE-----EDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHP 85 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecCh-----HHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccC
Confidence 57889999999999999999988765 4899999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCCC
Q 031379 86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPAL 159 (160)
Q Consensus 86 ni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~~ 159 (160)
||-.+|.||...|.. .|+|..+|..||..|+++|..|++++.+|++|..+..++.++|.+.||-++.-+|+.
T Consensus 86 NVaaNGEICVNtLKk--DW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 86 NVAANGEICVNTLKK--DWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred CcccCceehhhhhhc--ccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 999999999999998 899999999999999999999999999999999999999999999999999888753
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-32 Score=185.82 Aligned_cols=120 Identities=32% Similarity=0.696 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCc-
Q 031379 4 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGF- 82 (160)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i- 82 (160)
.++.+||++|+.+++.+++.|+..... +|+..|.+.+.|.+||.|+|.+|++.++||+.||++.|.|.|+.++
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~v~------dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P 87 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHRVT------DNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP 87 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeecc------cchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence 789999999999999999999987732 4999999999999999999999999999999999999999999875
Q ss_pred ccccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcC-CCCCCCCC
Q 031379 83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ-PNPADPAQ 131 (160)
Q Consensus 83 ~Hpni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~-p~~~~~~n 131 (160)
.|||||++|.||+++|.+ .|+|++++.+|.++|.++|.+ ..-..|.+
T Consensus 88 ~HPHiYSNGHICL~iL~d--~WsPAmsv~SvClSIlSMLSSs~eKqrP~D 135 (161)
T KOG0427|consen 88 LHPHIYSNGHICLDILYD--SWSPAMSVQSVCLSILSMLSSSKEKQRPTD 135 (161)
T ss_pred CCCceecCCeEEEEeecc--cCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence 899999999999999999 899999999999999999965 33334443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-32 Score=197.28 Aligned_cols=120 Identities=30% Similarity=0.575 Sum_probs=108.7
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecc
Q 031379 1 MSGGIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 Ms~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t 80 (160)
|++..+.+||++||+.|++++.+++.+.|..+ |+++||.+|.||+||||+||.|+.+|.||++||++||.|++.|
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~-----nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT 75 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPN-----NILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT 75 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCcc-----ceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC
Confidence 77788999999999999999999999999884 9999999999999999999999999999999999999999998
Q ss_pred C--cccccccCCCcEeecCCCC-CCCCCCcCCHHHHHHHHHHhhcC--CCCCCC
Q 031379 81 G--FFHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQ--PNPADP 129 (160)
Q Consensus 81 ~--i~Hpni~~~G~ic~~~l~~-~~~W~p~~~i~~vl~~i~~ll~~--p~~~~~ 129 (160)
+ +|-+| -++|+++... .+.|+|+++|.+||.+|.++|.+ |...+.
T Consensus 76 PNGRFktn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI 125 (244)
T KOG0894|consen 76 PNGRFKTN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSI 125 (244)
T ss_pred CCCceecC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcc
Confidence 6 67777 7999999865 34899999999999999999965 444433
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-25 Score=163.82 Aligned_cols=144 Identities=24% Similarity=0.394 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCC--CCCeeEeccCcccc
Q 031379 8 GRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPS--KPPKCKFPQGFFHP 85 (160)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~--~pP~v~f~t~i~Hp 85 (160)
--|+.|+..+.+.+.+|+++.|... |-+.|.++|++ ..+.|.||+|+|+|.+|++||. +.|+|.|.+.+|||
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSya-----n~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP 95 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYA-----NKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHP 95 (258)
T ss_pred HHHHHHHHHHHhccCCceEEccccc-----ccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeecccccc
Confidence 4578899999999999999999985 88999999996 5667999999999999999995 57999999999999
Q ss_pred cccC-CCcEeecCCCCCCCCCCc-CCHHHHHHHHHHhhcCCCCCCC--CCHHHHHHHHHCHHHHHHHHHHHHHHcCCC
Q 031379 86 NVYP-SGTVCLSILNEDNGWRPA-ITVKQILVGIQDLLDQPNPADP--AQTEGYHLFIQDAAEYKRRVRQQAKQYPAL 159 (160)
Q Consensus 86 ni~~-~G~ic~~~l~~~~~W~p~-~~i~~vl~~i~~ll~~p~~~~~--~n~~aa~~~~~~~~~f~~~~r~~~~k~a~~ 159 (160)
+|.+ ++.+|+.-... .|+.. .+|++||..||..|.+|+.+.+ .|++|+.+|.+++++|.++|+++++.+.++
T Consensus 96 ~icp~skeLdl~raf~--eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~~ 171 (258)
T KOG0429|consen 96 LICPKSKELDLNRAFP--EWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRSM 171 (258)
T ss_pred ccCCCccceeHhhhhh--hhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9995 89999988877 69887 6999999999999999988755 599999999999999999999999876543
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.6e-23 Score=152.85 Aligned_cols=112 Identities=30% Similarity=0.590 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccC--
Q 031379 4 GIARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQG-- 81 (160)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~-- 81 (160)
+.+.|||.+|.++++ ++...+.+.|++ +|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+..+|+
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plE-----dNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG 83 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLE-----DNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG 83 (314)
T ss_pred CHHHHHHHHHHHHhc-Cchhhhhhccch-----hceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC
Confidence 678999999999998 777778888877 499999999999999999999999999999999999999999986
Q ss_pred cccccccCCCcEeecCCCC-CCCCCCcCCHHHHHHHHHHhh-cCCC
Q 031379 82 FFHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLL-DQPN 125 (160)
Q Consensus 82 i~Hpni~~~G~ic~~~l~~-~~~W~p~~~i~~vl~~i~~ll-~~p~ 125 (160)
+|.-| -+||+++..- .+.|.|+++|.+.|.+|..+| ..|+
T Consensus 84 RFE~n----kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 84 RFEVN----KKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred ceeeC----ceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 45444 6899999864 468999999999999999998 3343
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.5e-18 Score=149.15 Aligned_cols=117 Identities=32% Similarity=0.662 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccC--cccc
Q 031379 8 GRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQG--FFHP 85 (160)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~--i~Hp 85 (160)
+..+.|++-+..+.+.|+.+...+. -+....+.|.||.||||.+|.|.|.|.||.+||.+||.|..-+. +++|
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~-----r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np 928 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYED-----RMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP 928 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechH-----HHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence 3456677777788999998876653 55556899999999999999999999999999999999999764 7999
Q ss_pred cccCCCcEeecCCCC-----CCCCCCcCCHHHHHHHHHHhh--cCCCCCCC
Q 031379 86 NVYPSGTVCLSILNE-----DNGWRPAITVKQILVGIQDLL--DQPNPADP 129 (160)
Q Consensus 86 ni~~~G~ic~~~l~~-----~~~W~p~~~i~~vl~~i~~ll--~~p~~~~~ 129 (160)
|.|++|++|+++|.. .+.|+|+-++.+||.+||.|. ..|.++.+
T Consensus 929 nly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 929 NLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred ccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcc
Confidence 999999999999986 367999999999999999999 44655543
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.1e-16 Score=107.07 Aligned_cols=118 Identities=23% Similarity=0.304 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc
Q 031379 5 IARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H 84 (160)
.+..||.+|+.+-++...+|.....+++.| +.-+..|..+|.||+.|+||+.+|.++|.+.++||..||.|+|.+++--
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~-dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm 83 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDD-DMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINM 83 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCC-cceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeee
Confidence 456789999998877777775555444322 2445689999999999999999999999999999999999999999999
Q ss_pred ccccC-CCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcC
Q 031379 85 PNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123 (160)
Q Consensus 85 pni~~-~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~ 123 (160)
..|+. +|.+.-..+.--++|...+++..+|..++.++..
T Consensus 84 ~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 84 NGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cccccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 99985 6777554443234899999999999999977643
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=9e-16 Score=133.54 Aligned_cols=115 Identities=31% Similarity=0.615 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccC---
Q 031379 5 IARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQG--- 81 (160)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~--- 81 (160)
--.+|+++|++.+.++.+.|+.+.+.. ..+....+.|.||.||||++|.|.|.|.||..||..||.+.++|.
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e-----~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~ 356 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDE-----GRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGV 356 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccc-----cccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccce
Confidence 357899999999999999999888777 488999999999999999999999999999999999999999876
Q ss_pred cccccccCCCcEeecCCCCC-----CCCCCc-CCHHHHHHHHHHhhcCC
Q 031379 82 FFHPNVYPSGTVCLSILNED-----NGWRPA-ITVKQILVGIQDLLDQP 124 (160)
Q Consensus 82 i~Hpni~~~G~ic~~~l~~~-----~~W~p~-~~i~~vl~~i~~ll~~p 124 (160)
++.||.|.+|+||+++|... +.|+|. .++.++|.+|+.++.+-
T Consensus 357 R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 357 RLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred eecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 79999999999999999652 479999 79999999999999553
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.83 E-value=2.1e-08 Score=70.34 Aligned_cols=67 Identities=31% Similarity=0.656 Sum_probs=60.0
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeEeccCc---ccccccCCCcEee---cCCCCCCCCCCcCCHHHHHHHHHHhhcC
Q 031379 55 EGGFFPLTLHFSEDYPSKPPKCKFPQGF---FHPNVYPSGTVCL---SILNEDNGWRPAITVKQILVGIQDLLDQ 123 (160)
Q Consensus 55 ~gg~f~~~i~~p~~YP~~pP~v~f~t~i---~Hpni~~~G~ic~---~~l~~~~~W~p~~~i~~vl~~i~~ll~~ 123 (160)
.|+.+.+.|.||+.||..||.|....+. +-|||+.+|.+|+ ...-+ .|.|.-.+.++|..+..+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D--~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLD--PWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccC--ccCHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999998643 7899999999999 66656 899999999999999999974
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=8.4e-08 Score=64.10 Aligned_cols=92 Identities=23% Similarity=0.434 Sum_probs=65.9
Q ss_pred EEEEEeCCCCCCCCCeeEeccCccc-ccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCC--CCCCCCHHHHH
Q 031379 60 PLTLHFSEDYPSKPPKCKFPQGFFH-PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN--PADPAQTEGYH 136 (160)
Q Consensus 60 ~~~i~~p~~YP~~pP~v~f~t~i~H-pni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~--~~~~~n~~aa~ 136 (160)
-+.+.|+++||+.||.+|...++-. --|-.+|.||+.+|..+ +|+.+++|+.++++|-..+..-. ...+++.+..
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~q-gwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQ-GWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccc-cccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 4567899999999999987655322 22335899999999885 89999999999999999997654 3445544433
Q ss_pred HHH--HCHHHHHHHHHHHH
Q 031379 137 LFI--QDAAEYKRRVRQQA 153 (160)
Q Consensus 137 ~~~--~~~~~f~~~~r~~~ 153 (160)
+|. +--+.|+..++...
T Consensus 92 ~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 443 23456666665543
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.58 E-value=3e-07 Score=63.41 Aligned_cols=79 Identities=24% Similarity=0.474 Sum_probs=55.9
Q ss_pred CCcceEEEEeeCCCCCCCCCCEE--EEEEEeCCCCCCCCCeeEeccCc-----ccccccCCCcEeecCCCCCCCCCC-cC
Q 031379 37 VNLMVWHCTIPGKAGTDWEGGFF--PLTLHFSEDYPSKPPKCKFPQGF-----FHPNVYPSGTVCLSILNEDNGWRP-AI 108 (160)
Q Consensus 37 ~~~~~w~~~i~Gp~~tpy~gg~f--~~~i~~p~~YP~~pP~v~f~t~i-----~Hpni~~~G~ic~~~l~~~~~W~p-~~ 108 (160)
..++...++|.- .|.|.+| .+.|.+|.+||.+||.+...... -+.+||.+|+|.+..|.. |++ ..
T Consensus 30 ~~LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~---W~~~~s 102 (121)
T PF05743_consen 30 KLLLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQN---WNPPSS 102 (121)
T ss_dssp EEEEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT-----TTTS
T ss_pred heEEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhcc---CCCCCC
Confidence 455566666653 4888888 47778999999999999886331 244999999999999865 988 67
Q ss_pred CHHHHHHHHHHhhc
Q 031379 109 TVKQILVGIQDLLD 122 (160)
Q Consensus 109 ~i~~vl~~i~~ll~ 122 (160)
++.+++..+...|.
T Consensus 103 ~L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 103 NLVDLVQELQAVFS 116 (121)
T ss_dssp -HHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998884
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=3e-05 Score=61.33 Aligned_cols=83 Identities=24% Similarity=0.478 Sum_probs=65.2
Q ss_pred CCCcceEEEEeeCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeEeccC-----cccccccCCCcEeecCCCCCCCCCCc-
Q 031379 36 SVNLMVWHCTIPGKAGTDWEGGFFP--LTLHFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTVCLSILNEDNGWRPA- 107 (160)
Q Consensus 36 ~~~~~~w~~~i~Gp~~tpy~gg~f~--~~i~~p~~YP~~pP~v~f~t~-----i~Hpni~~~G~ic~~~l~~~~~W~p~- 107 (160)
+.+++...++|. .+|.|.+|. +.|.+.+.||+.||.+..... --|-|||.+|.|.+..|.. |.+.
T Consensus 49 s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~---W~~ps 121 (365)
T KOG2391|consen 49 SRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHN---WDPPS 121 (365)
T ss_pred ccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhcc---CCCcc
Confidence 356666666655 468888885 677889999999999977521 1389999999999999975 9766
Q ss_pred CCHHHHHHHHHHhhcCCC
Q 031379 108 ITVKQILVGIQDLLDQPN 125 (160)
Q Consensus 108 ~~i~~vl~~i~~ll~~p~ 125 (160)
.++..++..+.+.|.++.
T Consensus 122 sdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 122 SDLVGLIQELIAAFSEDP 139 (365)
T ss_pred chHHHHHHHHHHHhcCCC
Confidence 789999999999996643
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.80 E-value=1.2e-05 Score=56.07 Aligned_cols=97 Identities=26% Similarity=0.431 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCE----------EEEEEEeCCCCCCCCCe
Q 031379 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGF----------FPLTLHFSEDYPSKPPK 75 (160)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~~p~~YP~~pP~ 75 (160)
=..||.+||..|-+-. ..... +-..|.-.=.-+.||-|.|.+ |.+++.+|..||..||.
T Consensus 25 W~~RLKEEy~aLI~Yv------~~nK~-----~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pE 93 (161)
T PF08694_consen 25 WVQRLKEEYQALIKYV------ENNKE-----NDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPE 93 (161)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHH-----TT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS---
T ss_pred HHHHHHHHHHHHHHHH------Hhccc-----ccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcc
Confidence 4689999999875421 00000 112232222335666666644 55677789999999999
Q ss_pred eEecc-CcccccccCCCcEeecCCCCCCCC---CCcCCHHHHH
Q 031379 76 CKFPQ-GFFHPNVYPSGTVCLSILNEDNGW---RPAITVKQIL 114 (160)
Q Consensus 76 v~f~t-~i~Hpni~~~G~ic~~~l~~~~~W---~p~~~i~~vl 114 (160)
|..-. .---.-.|..|+||++.-... -| .|.++|...|
T Consensus 94 i~lPeLdGKTaKMYRGGkIClt~HFkP-LWakN~PkfGIaHal 135 (161)
T PF08694_consen 94 IALPELDGKTAKMYRGGKICLTDHFKP-LWAKNVPKFGIAHAL 135 (161)
T ss_dssp -B-GGGTTT-SSBCCCCBB---TTHHH-HHHCTTTT--HHHHH
T ss_pred eeccccCCchhhhhcCceEeeecccch-hhhhcCCchhHHHHH
Confidence 98742 112344567899999865431 34 4556766554
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00073 Score=46.49 Aligned_cols=96 Identities=23% Similarity=0.361 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCE----------EEEEEEeCCCCCCCCCe
Q 031379 6 ARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGF----------FPLTLHFSEDYPSKPPK 75 (160)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~~p~~YP~~pP~ 75 (160)
=.+||..||+.+..-... +.+ +-..|.-.=.-+.||-|-|.+ |.+++.+|-.||...|.
T Consensus 28 wvqrlkeey~sli~yvqn--------nk~---~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape 96 (167)
T KOG3357|consen 28 WVQRLKEEYQSLIAYVQN--------NKS---NDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE 96 (167)
T ss_pred HHHHHHHHHHHHHHHHHh--------Ccc---cCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence 468999999988543211 111 222343333558889888865 55666779999999999
Q ss_pred eEeccC-cccccccCCCcEeecCCCCCCCCCCc---CCHHHH
Q 031379 76 CKFPQG-FFHPNVYPSGTVCLSILNEDNGWRPA---ITVKQI 113 (160)
Q Consensus 76 v~f~t~-i~Hpni~~~G~ic~~~l~~~~~W~p~---~~i~~v 113 (160)
|..-.- --.--.|..|+||+.--... -|... .++...
T Consensus 97 ialpeldgktakmyrggkiclt~hfkp-lwarn~pkfgiaha 137 (167)
T KOG3357|consen 97 IALPELDGKTAKMYRGGKICLTDHFKP-LWARNVPKFGIAHA 137 (167)
T ss_pred ccccccCchhhhhhcCceEeeccccch-hhhhcCcchhHHHH
Confidence 875310 11223456899999644332 56443 455443
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.47 E-value=0.022 Score=37.86 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEee--CCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccC
Q 031379 7 RGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIP--GKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~--Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~ 81 (160)
..+.+.|+..|+.--+... ..... .+...+.+.+. ....+.-....+.+.+.||++||..+|.|.+.+.
T Consensus 3 ~e~~~~EieaL~sIy~~~~----~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF----IEIES--KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE----SSSTS--SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCc----ccccc--CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3467788888887655444 11111 24455666662 1233334456889999999999999999987654
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.97 E-value=0.13 Score=33.77 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCEEEEEEEeCCCCCCCCCeeEeccC
Q 031379 56 GGFFPLTLHFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 56 gg~f~~~i~~p~~YP~~pP~v~f~t~ 81 (160)
...+.+.+.||++||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 34588999999999999999987653
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.61 E-value=0.023 Score=41.11 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=49.3
Q ss_pred EEEEEeCCCCCCCCCeeEeccCcc---cccccCC-----CcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcC
Q 031379 60 PLTLHFSEDYPSKPPKCKFPQGFF---HPNVYPS-----GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123 (160)
Q Consensus 60 ~~~i~~p~~YP~~pP~v~f~t~i~---Hpni~~~-----G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~ 123 (160)
.+.|.|+.+||..+|.|.++-+.| +||+... ..+|+---.- ..|.+..++..+|..|...|.+
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~-~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPW-SEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCH-HHhhhccCHHHHHHHHHHHHHH
Confidence 467899999999999887765432 5777754 6799865543 2699999999999999999844
No 34
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.31 E-value=0.17 Score=34.83 Aligned_cols=82 Identities=18% Similarity=0.330 Sum_probs=50.6
Q ss_pred ceEEEEeeC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc-------cccc-----CCCcEeecCCCCCCCCC
Q 031379 40 MVWHCTIPG--KAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFH-------PNVY-----PSGTVCLSILNEDNGWR 105 (160)
Q Consensus 40 ~~w~~~i~G--p~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H-------pni~-----~~G~ic~~~l~~~~~W~ 105 (160)
..|.+ |.| -+.+.|.+..=.+.|.+|..||..+|-.-+..+-.. |+-. -.|+.--....-...|+
T Consensus 24 ~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~ 102 (122)
T PF14462_consen 24 RRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWR 102 (122)
T ss_pred ccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCCCC
Confidence 44544 555 456669999999999999999999876655543221 2110 02221110000013699
Q ss_pred CcC-CHHHHHHHHHHhhc
Q 031379 106 PAI-TVKQILVGIQDLLD 122 (160)
Q Consensus 106 p~~-~i~~vl~~i~~ll~ 122 (160)
|.. +|.+.|..|...|.
T Consensus 103 P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 103 PGVDDLWTHLARVEHALA 120 (122)
T ss_pred CCCCcHHHHHHHHHHHHh
Confidence 985 89999988887763
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=92.11 E-value=0.36 Score=38.23 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccc
Q 031379 7 RGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~Hpn 86 (160)
..+|.+|+.++..+....+... +++....+.+..- .....++|.++.+||.++|.+..--++ ...
T Consensus 101 ys~ll~EIe~IGW~kl~~i~~d--------~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~-~~~ 165 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKLVQIQFD--------DDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI-PFS 165 (291)
T ss_dssp C-CHHHHHHHHHCGCCEEEEE---------CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS--HH
T ss_pred HHHHHHHHHHhccccceEEecC--------CCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc-chh
Confidence 3578888888876655443222 4888888888831 257889999999999999976432221 111
Q ss_pred ccCCCcEeecCCCCCCCCCC-cCCHHHHHHHHHHhh
Q 031379 87 VYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLL 121 (160)
Q Consensus 87 i~~~G~ic~~~l~~~~~W~p-~~~i~~vl~~i~~ll 121 (160)
. .|.+ ..++.+++...+..+
T Consensus 166 -------------~--~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 166 -------------L--SWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp -------------H--HHHCHT-SHHHHHHHHHHHH
T ss_pred -------------h--hhcccccCHHHHHHHHHHHH
Confidence 1 5888 568888877766665
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.49 E-value=1.5 Score=32.96 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCC--CCCCCCEEEEEEEeCCCCCCCCCeeEe
Q 031379 10 LAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAG--TDWEGGFFPLTLHFSEDYPSKPPKCKF 78 (160)
Q Consensus 10 l~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~--tpy~gg~f~~~i~~p~~YP~~pP~v~f 78 (160)
..+|+..|...-+..+..... .+...+.++|.--.+ .-+.| .+.+.+.++++||.++|.|.+
T Consensus 7 Qe~E~EaLeSIY~de~~~i~~------~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHINS------EDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred HHHHHHHHHHhccchhhhhhc------cCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 455666666544433311111 233335555542111 11223 788999999999999999943
No 37
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=88.09 E-value=0.92 Score=33.14 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=26.9
Q ss_pred cCccc---ccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCC
Q 031379 80 QGFFH---PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129 (160)
Q Consensus 80 t~i~H---pni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~~ 129 (160)
|+.|| +||+.+|+||...... |.......+..+...|.+....++
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~~-----P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNSL-----PKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCcC-----CCccCHHHHHHHHHHHhCCCccCC
Confidence 45677 6999999999987443 333334445555555544333333
No 38
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.70 E-value=7.3 Score=34.93 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEE-EEEEEeCCCCCCC-CCeeEecc
Q 031379 8 GRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFF-PLTLHFSEDYPSK-PPKCKFPQ 80 (160)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f-~~~i~~p~~YP~~-pP~v~f~t 80 (160)
+-|.+|+..+- .+...+.++.... --....+++.||-.-. .|-+| ++.|.||-+||.. +|+++|..
T Consensus 423 QnLgeE~S~Ig-~k~~nV~fEkidv-----a~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 423 QNLGEEFSLIG-VKIRNVNFEKIDV-----ADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hhHHhHHhHhh-ccccccceEeecc-----ccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEec
Confidence 34566666542 2333343332222 2345667777755443 45555 8999999999995 89999964
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=79.88 E-value=6.4 Score=31.77 Aligned_cols=61 Identities=23% Similarity=0.532 Sum_probs=43.3
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCeeEec-cCcccccccCCCcEeecCCCCCCCCCCc--CCHHHHHHHHHHhh
Q 031379 53 DWEGGFFPLTLHFSEDYPSKPPKCKFP-QGFFHPNVYPSGTVCLSILNEDNGWRPA--ITVKQILVGIQDLL 121 (160)
Q Consensus 53 py~gg~f~~~i~~p~~YP~~pP~v~f~-t~i~Hpni~~~G~ic~~~l~~~~~W~p~--~~i~~vl~~i~~ll 121 (160)
||.|...+-.|.|...||..||-+.|- ..-|+|..+ . +..|. +|++. -++..++..|..+-
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L~---~Wd~~dp~~Ll~li~EL~~~Y 124 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSLV---NWDPSDPNCLLNLISELRQLY 124 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchhh---cCCCCCchHHHHHHHHHHHHH
Confidence 588888999999999999999999996 445888432 1 12222 69877 36666666665443
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=76.53 E-value=5.4 Score=30.52 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=30.1
Q ss_pred cCccc---ccccCCCcEeecCCCCCCCCCCc-CCHHHHHHHHHHhhcCCCCCCC
Q 031379 80 QGFFH---PNVYPSGTVCLSILNEDNGWRPA-ITVKQILVGIQDLLDQPNPADP 129 (160)
Q Consensus 80 t~i~H---pni~~~G~ic~~~l~~~~~W~p~-~~i~~vl~~i~~ll~~p~~~~~ 129 (160)
|+.|| +||+.+|+||+.... .|. .++.+ +....+.|.+-.+..+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~-----~P~~~~~~~-i~~we~~FF~S~FTH~ 178 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR-----LPDRPTVAN-ISAWEDAFFSSRFTHP 178 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc-----CCCCcCHHH-HHHHHHHHhCCcccCC
Confidence 34666 599999999998653 343 46777 7777788766544443
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=59.25 E-value=13 Score=20.62 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhcC
Q 031379 6 ARGRLAEERKSWRKNH 21 (160)
Q Consensus 6 ~~~Rl~~E~~~l~~~~ 21 (160)
-.+||++|+.++....
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4689999999998653
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=52.64 E-value=21 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=21.6
Q ss_pred CCEEEEEEEeCCCCC-CCCCeeEec
Q 031379 56 GGFFPLTLHFSEDYP-SKPPKCKFP 79 (160)
Q Consensus 56 gg~f~~~i~~p~~YP-~~pP~v~f~ 79 (160)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 478999999999999 999999885
No 43
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=52.48 E-value=36 Score=20.89 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=33.7
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCCC
Q 031379 116 GIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPAL 159 (160)
Q Consensus 116 ~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~~ 159 (160)
.|+.++..-++...+.++|...+.+--+.|...+-+.+-++|+|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkH 49 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKH 49 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655556677899999999888889998888887777754
No 44
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.39 E-value=21 Score=29.18 Aligned_cols=69 Identities=22% Similarity=0.423 Sum_probs=44.0
Q ss_pred CCcceEE--EEeeCCCCCCCCCCE-------EEEEEEeCCCCCCCCCeeEeccCcccccccCCCcEeecCCCCCCCCCCc
Q 031379 37 VNLMVWH--CTIPGKAGTDWEGGF-------FPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPA 107 (160)
Q Consensus 37 ~~~~~w~--~~i~Gp~~tpy~gg~-------f~~~i~~p~~YP~~pP~v~f~t~i~Hpni~~~G~ic~~~l~~~~~W~p~ 107 (160)
.|+-.|+ +.+.||+|| |.+ -++.|...+.|+..-- |.. -|.++.. .|...
T Consensus 171 tnlIt~NRliLlhGPPGT---GKTSLCKaLaQkLSIR~~~~y~~~~l-iEi--------------nshsLFS---KWFsE 229 (423)
T KOG0744|consen 171 TNLITWNRLILLHGPPGT---GKTSLCKALAQKLSIRTNDRYYKGQL-IEI--------------NSHSLFS---KWFSE 229 (423)
T ss_pred CceeeeeeEEEEeCCCCC---ChhHHHHHHHHhheeeecCccccceE-EEE--------------ehhHHHH---HHHhh
Confidence 4777775 556899998 544 5688887777775421 100 0333332 36443
Q ss_pred --CCHHHHHHHHHHhhcCCCC
Q 031379 108 --ITVKQILVGIQDLLDQPNP 126 (160)
Q Consensus 108 --~~i~~vl~~i~~ll~~p~~ 126 (160)
--+..++..|+.++.+++.
T Consensus 230 SgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 230 SGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred hhhHHHHHHHHHHHHHhCCCc
Confidence 3588899999999988664
No 45
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=47.90 E-value=27 Score=25.88 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.7
Q ss_pred CCEEEEEEEeCCCCCCCCCeeEec
Q 031379 56 GGFFPLTLHFSEDYPSKPPKCKFP 79 (160)
Q Consensus 56 gg~f~~~i~~p~~YP~~pP~v~f~ 79 (160)
.|.|.|+=.+|--||..+|.|+|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 478889999999999999999985
No 46
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=45.60 E-value=78 Score=20.12 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=28.8
Q ss_pred ceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc
Q 031379 40 MVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 40 ~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H 84 (160)
..|.+.+.|+.+..-..-+=++...+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 47999999988765445566788888888876 77666666444
No 47
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.08 E-value=42 Score=24.95 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=25.4
Q ss_pred CCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031379 90 SGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122 (160)
Q Consensus 90 ~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~ 122 (160)
.+..|++++.. .|+|.+|++.-+.-++.++.
T Consensus 135 ~~~f~~sIlDr--~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDR--YYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHh--hhCCCCCHHHHHHHHHHHHH
Confidence 46789999988 89999999988777766653
No 48
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=44.05 E-value=29 Score=28.08 Aligned_cols=23 Identities=13% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEEEeCCCCCCCCCeeEecc
Q 031379 58 FFPLTLHFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 58 ~f~~~i~~p~~YP~~pP~v~f~t 80 (160)
.|-+.|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 57788889999999999999875
No 49
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=41.88 E-value=39 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCEEEEEEEeCCCCC-----CCCCeeEec
Q 031379 56 GGFFPLTLHFSEDYP-----SKPPKCKFP 79 (160)
Q Consensus 56 gg~f~~~i~~p~~YP-----~~pP~v~f~ 79 (160)
.|.|.|.-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 378999999999999 899999885
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=41.72 E-value=36 Score=27.30 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.4
Q ss_pred CEEEEEEEeCCCCCCCCCeeEeccC
Q 031379 57 GFFPLTLHFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 57 g~f~~~i~~p~~YP~~pP~v~f~t~ 81 (160)
-++.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3567888899999999999999764
No 51
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=41.59 E-value=66 Score=20.93 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=20.1
Q ss_pred CCCCEEEEEEEeCCCCCCCCCeeEeccC
Q 031379 54 WEGGFFPLTLHFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 54 y~gg~f~~~i~~p~~YP~~pP~v~f~t~ 81 (160)
-+|..+.|.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45667888777789999 599998854
No 52
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=39.96 E-value=33 Score=20.42 Aligned_cols=19 Identities=16% Similarity=0.618 Sum_probs=12.8
Q ss_pred CCCCcCCHHHHHHHHHHhh
Q 031379 103 GWRPAITVKQILVGIQDLL 121 (160)
Q Consensus 103 ~W~p~~~i~~vl~~i~~ll 121 (160)
+|.|.++|.+++.......
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999999877654
No 53
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=34.32 E-value=45 Score=25.12 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=43.4
Q ss_pred CCCCeeEeccCccccccc--CCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCC
Q 031379 71 SKPPKCKFPQGFFHPNVY--PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPA 127 (160)
Q Consensus 71 ~~pP~v~f~t~i~Hpni~--~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~ 127 (160)
+.||-|.|-.+.|...|| +.|-|--.+.....--.|+-.+.+-|..|..+|..|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 468999999999999998 467665555555212367889999999999999777654
No 54
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=34.11 E-value=1.1e+02 Score=23.90 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=31.8
Q ss_pred CcceEEEEeeCCCCCCCCCC---EEEEEEEeC-----CCCCCCCCeeEeccCcc
Q 031379 38 NLMVWHCTIPGKAGTDWEGG---FFPLTLHFS-----EDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 38 ~~~~w~~~i~Gp~~tpy~gg---~f~~~i~~p-----~~YP~~pP~v~f~t~i~ 83 (160)
|..-|.+.+..-+.....|- .|+.+++++ .+-||+||+|..+++-|
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 66678888885433334442 356666664 67899999999998744
No 55
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.60 E-value=1e+02 Score=22.84 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCee
Q 031379 5 IARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKC 76 (160)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v 76 (160)
-..+|+++|++.+.+.--..+++.|... -...+.+.+.--+++ ..|.++-.+-|++
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~Le-----~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPLLE-----EICTFDVLIYTDKDT-----------EVPEKWDESGPKL 174 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeeccccc-----ceeEEEEEEEeCCCc-----------cCCcchhcCCCeE
Confidence 3689999999999998888888888774 446666666654444 4566666666655
No 56
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=32.48 E-value=45 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHCHHHHHHHHHHHHHHcCCC
Q 031379 128 DPAQTEGYHLFIQDAAEYKRRVRQQAKQYPAL 159 (160)
Q Consensus 128 ~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~~ 159 (160)
.-.+.+|+..|.++++.|...+.+.+++.+.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~peL 268 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNPEL 268 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCHHH
Confidence 34688999999999999999999999987653
No 57
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=31.10 E-value=62 Score=19.49 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHCHHHHHHHHHHHHHHcCCC
Q 031379 129 PAQTEGYHLFIQDAAEYKRRVRQQAKQYPAL 159 (160)
Q Consensus 129 ~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~~ 159 (160)
.++.+++.....+-+.|.+.+-+.+.+|+.|
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~~h 49 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFMRH 49 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998988888888777654
No 58
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=30.55 E-value=1.4e+02 Score=18.79 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCCC
Q 031379 127 ADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPAL 159 (160)
Q Consensus 127 ~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~~ 159 (160)
..|-+.+|-..|.+-.....+..+++.++|-++
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYGPL 56 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 478899999999888888888888888888664
No 59
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=28.76 E-value=19 Score=18.66 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=8.7
Q ss_pred cccccccCCCc-Eee
Q 031379 82 FFHPNVYPSGT-VCL 95 (160)
Q Consensus 82 i~Hpni~~~G~-ic~ 95 (160)
.|||.++.+|+ .|-
T Consensus 2 ~yHPg~~~~g~W~CC 16 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCC 16 (32)
T ss_dssp EE-SS-EETTCESSS
T ss_pred CcCCCcccCCcCcCC
Confidence 48999998887 344
No 60
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=28.70 E-value=78 Score=23.53 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=19.9
Q ss_pred CCEEEEEEEeCCCCCC-----CCCeeEec
Q 031379 56 GGFFPLTLHFSEDYPS-----KPPKCKFP 79 (160)
Q Consensus 56 gg~f~~~i~~p~~YP~-----~pP~v~f~ 79 (160)
.|.|.|+-..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3779999999999998 78888774
No 61
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=28.19 E-value=1.1e+02 Score=18.69 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCC
Q 031379 116 GIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPA 158 (160)
Q Consensus 116 ~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~ 158 (160)
.|+.++..-++...+++++..+..+=-..|...+-..+-+.|+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777767888899999888888778888887766655544
No 62
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=27.83 E-value=2e+02 Score=23.54 Aligned_cols=59 Identities=25% Similarity=0.535 Sum_probs=32.6
Q ss_pred eEEEEeeC---CCCCCCCCCEEEEEEE----eCCCCCCCCCeeEe--ccCcccccccCCCcEeecCCCCCCCCCCcCCH
Q 031379 41 VWHCTIPG---KAGTDWEGGFFPLTLH----FSEDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILNEDNGWRPAITV 110 (160)
Q Consensus 41 ~w~~~i~G---p~~tpy~gg~f~~~i~----~p~~YP~~pP~v~f--~t~i~Hpni~~~G~ic~~~l~~~~~W~p~~~i 110 (160)
.+.++-++ |.-.||.|.+|.+.=. -...||.-.= .-. ...++||| |--.+.+ |-|+.+.
T Consensus 226 lv~vS~H~garp~cap~QGkV~s~~~~~~~~~~~~y~~~~~-~gyg~~~Gl~g~N-------CrH~~~p---~~~Gi~~ 293 (361)
T PF06152_consen 226 LVEVSSHPGARPSCAPWQGKVYSLSGGGRPGKDGKYPSLSD-TGYGTPAGLFGPN-------CRHSLYP---FIPGIST 293 (361)
T ss_pred EEEEcCCCCCCCCCcCcCCEEEEeccCCCCCCCCCCCchhh-ccccccCCCcccC-------CCCcccC---CCCCCCC
Confidence 34445442 7788999999944321 1223332111 111 23478999 7766655 7777664
No 63
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=27.81 E-value=1.2e+02 Score=18.91 Aligned_cols=34 Identities=6% Similarity=0.281 Sum_probs=19.4
Q ss_pred hhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcC
Q 031379 120 LLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYP 157 (160)
Q Consensus 120 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a 157 (160)
+|.+-.-++.+.+++...| +.|++++++.+.|+.
T Consensus 30 ffadkpdestlspemkehy----ekfe~miqehtdkfn 63 (90)
T PF03037_consen 30 FFADKPDESTLSPEMKEHY----EKFERMIQEHTDKFN 63 (90)
T ss_pred hhcCCCcccccCHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444333455777776665 456666666666554
No 64
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.21 E-value=88 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.7
Q ss_pred CEEEEEEEeCCCCCC-----CCCeeEec
Q 031379 57 GFFPLTLHFSEDYPS-----KPPKCKFP 79 (160)
Q Consensus 57 g~f~~~i~~p~~YP~-----~pP~v~f~ 79 (160)
|.|.|.-.+|--||. .||.|+|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 778899999999995 77777663
No 65
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=26.01 E-value=1.8e+02 Score=24.66 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=11.6
Q ss_pred EEEEEEeCCCCCCC
Q 031379 59 FPLTLHFSEDYPSK 72 (160)
Q Consensus 59 f~~~i~~p~~YP~~ 72 (160)
..+.++||.+|+..
T Consensus 211 k~i~vtFP~dy~a~ 224 (441)
T COG0544 211 KDIKVTFPEDYHAE 224 (441)
T ss_pred eEEEEEcccccchh
Confidence 44889999999985
No 66
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=24.62 E-value=1e+02 Score=22.23 Aligned_cols=52 Identities=13% Similarity=0.357 Sum_probs=35.5
Q ss_pred CCCCcC-CHHHHHHHHHHhhcCCCCCCCCCHHH----HHHHHHCHHHHHHHHHHHHHHcCC
Q 031379 103 GWRPAI-TVKQILVGIQDLLDQPNPADPAQTEG----YHLFIQDAAEYKRRVRQQAKQYPA 158 (160)
Q Consensus 103 ~W~p~~-~i~~vl~~i~~ll~~p~~~~~~n~~a----a~~~~~~~~~f~~~~r~~~~k~a~ 158 (160)
...|.+ ++.+++..|..+|..-. +|.+. -..|+.|+.++.+.|+.---+|..
T Consensus 6 ~~~p~~~sl~dLv~~lh~~F~~~~----vnveeV~~lM~sYkSnp~EWr~yAkFD~y~YTR 62 (196)
T KOG4064|consen 6 VLKPRMISLVDLVVQLHEIFQQKL----VNVEEVMKLMASYKSNPNEWRRYAKFDMYKYTR 62 (196)
T ss_pred ccCchhhhHHHHHHHHHHHHHhcc----cCHHHHHHHHHHhhcCHHHHHHHHhhhHHHHhh
Confidence 355654 88999999999885432 44433 336788998888888776666643
No 67
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.59 E-value=77 Score=24.78 Aligned_cols=50 Identities=6% Similarity=0.189 Sum_probs=37.3
Q ss_pred CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcCC
Q 031379 103 GWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPA 158 (160)
Q Consensus 103 ~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a~ 158 (160)
-|-.......++..|..-|..- +++-+..|++|.+.|.++.++.-+++.+
T Consensus 123 iWldp~n~~~~a~~I~~~L~~~------dP~~~~~y~~N~~~~~~~L~~l~~~~~~ 172 (286)
T cd01019 123 LWLSPENAAEVAQAVAEKLSAL------DPDNAATYAANLEAFNARLAELDATIKE 172 (286)
T ss_pred cCCCHHHHHHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777888888888888643 3444678999999999888877666554
No 68
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.45 E-value=80 Score=23.23 Aligned_cols=49 Identities=8% Similarity=0.230 Sum_probs=34.5
Q ss_pred CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcC
Q 031379 103 GWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYP 157 (160)
Q Consensus 103 ~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a 157 (160)
-|.....+..+...|...|..-++ +-+..|++|.+.|.++..+--+++.
T Consensus 110 ~Wldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~l~~l~~~~~ 158 (203)
T cd01145 110 VWLDPNNAPALAKALADALIELDP------SEQEEYKENLRVFLAKLNKLLREWE 158 (203)
T ss_pred eecCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 487777788888888888865443 3356888888888887765554443
No 69
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.13 E-value=1.2e+02 Score=17.89 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCC
Q 031379 1 MSGGIARGRLAEERKSWRKNHPHG 24 (160)
Q Consensus 1 Ms~~~~~~Rl~~E~~~l~~~~~~~ 24 (160)
||++-|+.-+.+|+++.+++...+
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~ 51 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRI 51 (60)
T ss_pred ccchhHHHHHHHHHHHHhcccccc
Confidence 677778889999999888765544
No 70
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=23.93 E-value=1.3e+02 Score=24.29 Aligned_cols=39 Identities=15% Similarity=0.436 Sum_probs=26.8
Q ss_pred eEEEEeeCCCCC-CCCCCEEEEEEEe--CCCCCCCCCeeEec
Q 031379 41 VWHCTIPGKAGT-DWEGGFFPLTLHF--SEDYPSKPPKCKFP 79 (160)
Q Consensus 41 ~w~~~i~Gp~~t-py~gg~f~~~i~~--p~~YP~~pP~v~f~ 79 (160)
+|...+.|-.++ -|++|.+++++.= =++--...|+|||-
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG 239 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG 239 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccccCCceEee
Confidence 588999995555 7889999876651 12223456799984
No 71
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=23.70 E-value=1.7e+02 Score=18.56 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=19.0
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHH
Q 031379 132 TEGYHLFIQDAAEYKRRVRQQAKQ 155 (160)
Q Consensus 132 ~~aa~~~~~~~~~f~~~~r~~~~k 155 (160)
.+...++++||+.|++..++..+.
T Consensus 7 D~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 7 DELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHH
Confidence 456778899999999888877664
No 72
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=23.48 E-value=85 Score=27.44 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=24.2
Q ss_pred CCCCCCEEEEEEEeCCCCCC---CCCeeEeccC
Q 031379 52 TDWEGGFFPLTLHFSEDYPS---KPPKCKFPQG 81 (160)
Q Consensus 52 tpy~gg~f~~~i~~p~~YP~---~pP~v~f~t~ 81 (160)
+||.=|.|.+ +.+|++||+ +-|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 6888899986 457889999 4799999986
No 73
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=22.88 E-value=4.7e+02 Score=23.21 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=27.3
Q ss_pred EEEEEeCCCCCCCCCeeEeccCcccccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCC
Q 031379 60 PLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128 (160)
Q Consensus 60 ~~~i~~p~~YP~~pP~v~f~t~i~Hpni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 128 (160)
-+++..|.+||... +|++-.- .+..+.-+.+|=.++++-|..|...+
T Consensus 662 Pl~lsVP~~YPaq~-------------------~~vdr~~---~y~a~pflq~vq~s~~~RlsrP~~~S 708 (742)
T KOG4274|consen 662 PLRLSVPTTYPAQN-------------------VTVDRAV---IYLAAPFLQDVQNSVYERLSRPGLSS 708 (742)
T ss_pred Ceeeeccccccccc-------------------hhhhhHH---HhhhcHHHHHHHHHHHHHHccCCcch
Confidence 48888899998743 3443211 12334445666667777666665544
No 74
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=22.79 E-value=2.2e+02 Score=23.76 Aligned_cols=72 Identities=18% Similarity=0.348 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEE--EEeeCCCCCCCCCCEEE---------EEEEeCCCCCCCCCeeEe
Q 031379 10 LAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWH--CTIPGKAGTDWEGGFFP---------LTLHFSEDYPSKPPKCKF 78 (160)
Q Consensus 10 l~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~--~~i~Gp~~tpy~gg~f~---------~~i~~p~~YP~~pP~v~f 78 (160)
+..|.++|+...|..-.+... .+|+ +.|. |... +..+.|+ +. .|...|+++||.++.
T Consensus 250 ne~Ev~Rir~eHPdd~~~vv~---------~~~RvkG~L~-vsRA-fGd~~lK~~~~n~e~l~~-~fr~~~~~t~Pylta 317 (390)
T KOG0700|consen 250 NEDEVRRIRSEHPDDPHIVVN---------KHWRVKGILQ-VSRA-FGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTA 317 (390)
T ss_pred cHHHHHHHHHhCCCCcceEee---------ccceeeEEEE-eeee-ccceeecchhhccchhHh-hcCCCCCCCCCceec
Confidence 566777787776655433321 1142 3333 3322 3334333 11 678889999999999
Q ss_pred ccCcccccccCCCcE
Q 031379 79 PQGFFHPNVYPSGTV 93 (160)
Q Consensus 79 ~t~i~Hpni~~~G~i 93 (160)
.+.+.|--+.++-+.
T Consensus 318 eP~i~~HrL~p~DkF 332 (390)
T KOG0700|consen 318 EPSITHHKLTPNDKF 332 (390)
T ss_pred cceEEEEEcCCCCeE
Confidence 999888777665553
No 75
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=21.50 E-value=66 Score=19.18 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q 031379 7 RGRLAEERKSWR 18 (160)
Q Consensus 7 ~~Rl~~E~~~l~ 18 (160)
.+||++|+.++-
T Consensus 36 r~rL~kEL~d~D 47 (59)
T PF12065_consen 36 RQRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHHcc
Confidence 468999998773
No 76
>PF15572 Imm26: Immunity protein 26
Probab=21.32 E-value=91 Score=20.53 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=17.3
Q ss_pred CCCCCCCCCEEEEEEEeCCCCCCCCCeeEec
Q 031379 49 KAGTDWEGGFFPLTLHFSEDYPSKPPKCKFP 79 (160)
Q Consensus 49 p~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~ 79 (160)
+.+..+.|.+|++ |..||++ +.|.|.
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFm 32 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFM 32 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEE
Confidence 3455666776654 5559999 777774
No 77
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=21.27 E-value=60 Score=23.56 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCCCeEEeecCCCCCCCCcceEEEEeeCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEec---cCccccc
Q 031379 10 LAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFP---QGFFHPN 86 (160)
Q Consensus 10 l~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~---t~i~Hpn 86 (160)
+..++++....-..|+++.-... .+.+ .|-+-.--..++ .+||.|-+. +..-|+-
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~-----------------~~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~ 63 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAG-----------------DAGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPV 63 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEec-----------------CCCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHH
Confidence 45567888888888887654321 1111 122222111222 469999884 4578899
Q ss_pred ccCCCcEeecCCCC
Q 031379 87 VYPSGTVCLSILNE 100 (160)
Q Consensus 87 i~~~G~ic~~~l~~ 100 (160)
|-.+|++|+++|..
T Consensus 64 i~~sg~F~VnvL~~ 77 (170)
T PRK15486 64 FQGNGKLCINVLNH 77 (170)
T ss_pred HHhCCeEEEEEChh
Confidence 99999999999976
No 78
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.12 E-value=1.1e+02 Score=23.46 Aligned_cols=49 Identities=14% Similarity=0.320 Sum_probs=35.7
Q ss_pred CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHcC
Q 031379 103 GWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYP 157 (160)
Q Consensus 103 ~W~p~~~i~~vl~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~r~~~~k~a 157 (160)
-|-.......+...|...|..-++.. +..|++|.+.|.+..+.-.+++.
T Consensus 97 ~Wldp~n~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~l~~l~~~~~ 145 (264)
T cd01020 97 LWYDPETMSKVANALADALVKADPDN------KKYYQANAKKFVASLKPLAAKIA 145 (264)
T ss_pred eecCHhHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48777788888899999996544332 46888888888888776655543
No 79
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=20.92 E-value=62 Score=22.90 Aligned_cols=30 Identities=20% Similarity=0.529 Sum_probs=25.5
Q ss_pred CCCCeeEec---cCcccccccCCCcEeecCCCC
Q 031379 71 SKPPKCKFP---QGFFHPNVYPSGTVCLSILNE 100 (160)
Q Consensus 71 ~~pP~v~f~---t~i~Hpni~~~G~ic~~~l~~ 100 (160)
.+||.|.+. ...-|+.|-.+|+.|+++|..
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 579999884 456889999999999999976
No 80
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=20.54 E-value=1.7e+02 Score=17.27 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHCHHHHHHHHH
Q 031379 129 PAQTEGYHLFIQDAAEYKRRVR 150 (160)
Q Consensus 129 ~~n~~aa~~~~~~~~~f~~~~r 150 (160)
.-|++.+.+..+|++.|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 4699999999999999988754
No 81
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.29 E-value=88 Score=26.21 Aligned_cols=20 Identities=45% Similarity=0.969 Sum_probs=14.2
Q ss_pred EEEEeCCCCCC-CCCeeEecc
Q 031379 61 LTLHFSEDYPS-KPPKCKFPQ 80 (160)
Q Consensus 61 ~~i~~p~~YP~-~pP~v~f~t 80 (160)
+...+|++||. +||++...+
T Consensus 78 lkf~LP~~YPs~spP~f~l~s 98 (445)
T KOG1814|consen 78 LKFHLPNDYPSVSPPKFELKS 98 (445)
T ss_pred eeeecCCccccCCCCceeeeh
Confidence 55678999998 577765443
No 82
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=1.5e+02 Score=21.26 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=26.0
Q ss_pred cccccCCCcEeecCCCCCCCCCCcCCHHHHHHHHHHh
Q 031379 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120 (160)
Q Consensus 84 Hpni~~~G~ic~~~l~~~~~W~p~~~i~~vl~~i~~l 120 (160)
+.-|+++|+|..-. . .+++.-+...++..|..+
T Consensus 123 TfvId~dG~I~~~~--~--~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 123 TFVIDPDGKIRYVW--R--KVKVKGHADEVLAALKKL 155 (157)
T ss_pred EEEECCCCeEEEEe--c--CCCCcccHHHHHHHHHHh
Confidence 34578899998876 3 688888999999888765
Done!