Query 031381
Match_columns 160
No_of_seqs 171 out of 1350
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0907 Thioredoxin [Posttrans 99.8 1.3E-19 2.8E-24 130.3 0.4 77 83-159 3-81 (106)
2 KOG0910 Thioredoxin-like prote 99.7 5.1E-19 1.1E-23 133.5 1.3 78 79-159 42-122 (150)
3 cd02954 DIM1 Dim1 family; Dim1 99.7 6.5E-19 1.4E-23 128.2 -0.6 71 87-159 2-75 (114)
4 PLN00410 U5 snRNP protein, DIM 99.7 7.3E-19 1.6E-23 132.4 -1.6 77 82-160 6-85 (142)
5 cd02986 DLP Dim1 family, Dim1- 99.7 9.1E-19 2E-23 127.2 -1.1 72 87-160 2-76 (114)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.7 7E-18 1.5E-22 122.5 0.9 80 78-159 8-91 (113)
7 KOG0908 Thioredoxin-like prote 99.7 9.7E-18 2.1E-22 135.6 1.2 78 80-159 2-81 (288)
8 cd02985 TRX_CDSP32 TRX family, 99.7 7.1E-18 1.5E-22 119.6 -1.2 72 86-159 2-78 (103)
9 PHA02278 thioredoxin-like prot 99.6 1.7E-17 3.7E-22 118.6 -0.3 71 85-159 2-79 (103)
10 cd02989 Phd_like_TxnDC9 Phosdu 99.6 3.5E-17 7.6E-22 118.4 0.8 79 77-159 2-82 (113)
11 cd03003 PDI_a_ERdj5_N PDIa fam 99.6 7.1E-17 1.5E-21 113.2 0.5 74 81-159 3-79 (101)
12 cd02948 TRX_NDPK TRX domain, T 99.6 7.4E-17 1.6E-21 114.1 -0.2 72 83-159 3-78 (102)
13 cd02999 PDI_a_ERp44_like PDIa 99.6 5.7E-17 1.2E-21 114.7 -1.2 70 88-159 7-79 (100)
14 cd03004 PDI_a_ERdj5_C PDIa fam 99.6 7.5E-17 1.6E-21 113.4 -0.6 75 81-159 3-80 (104)
15 cd02957 Phd_like Phosducin (Ph 99.6 1.2E-16 2.7E-21 114.9 -0.1 79 78-159 3-83 (113)
16 cd02956 ybbN ybbN protein fami 99.6 3.2E-16 7E-21 108.5 -0.9 70 88-159 1-73 (96)
17 cd03065 PDI_b_Calsequestrin_N 99.5 1.4E-15 3E-20 111.6 0.9 80 76-159 6-94 (120)
18 PTZ00051 thioredoxin; Provisio 99.5 1.1E-15 2.3E-20 106.1 0.1 75 81-159 2-78 (98)
19 cd02996 PDI_a_ERp44 PDIa famil 99.5 1E-15 2.2E-20 108.7 -0.5 75 80-159 2-85 (108)
20 PF00085 Thioredoxin: Thioredo 99.5 6.6E-16 1.4E-20 107.0 -1.5 74 83-159 2-78 (103)
21 cd03002 PDI_a_MPD1_like PDI fa 99.5 1.5E-15 3.2E-20 107.2 0.2 71 86-159 6-81 (109)
22 cd02987 Phd_like_Phd Phosducin 99.5 1.4E-15 3E-20 118.1 -0.1 81 77-159 60-142 (175)
23 cd02962 TMX2 TMX2 family; comp 99.5 1.6E-15 3.5E-20 115.4 0.2 78 79-159 28-115 (152)
24 COG3118 Thioredoxin domain-con 99.5 9.2E-16 2E-20 126.9 -1.3 77 81-159 25-104 (304)
25 cd02994 PDI_a_TMX PDIa family, 99.5 2E-15 4.3E-20 105.6 0.6 73 80-159 2-78 (101)
26 cd02963 TRX_DnaJ TRX domain, D 99.5 1.2E-15 2.7E-20 109.5 -1.1 73 86-159 10-86 (111)
27 KOG0190 Protein disulfide isom 99.5 4.9E-15 1.1E-19 130.2 0.8 91 65-159 348-445 (493)
28 cd02995 PDI_a_PDI_a'_C PDIa fa 99.5 5.9E-15 1.3E-19 102.7 0.5 72 85-159 5-80 (104)
29 cd02965 HyaE HyaE family; HyaE 99.5 7.1E-15 1.5E-19 106.5 0.4 70 86-159 16-90 (111)
30 cd02993 PDI_a_APS_reductase PD 99.5 4.8E-15 1E-19 105.8 -0.6 73 86-159 7-85 (109)
31 PRK10996 thioredoxin 2; Provis 99.5 7.8E-15 1.7E-19 109.6 0.1 80 75-159 31-113 (139)
32 cd02984 TRX_PICOT TRX domain, 99.5 5.7E-15 1.2E-19 102.1 -0.7 72 86-159 1-75 (97)
33 PRK09381 trxA thioredoxin; Pro 99.5 8.3E-15 1.8E-19 103.9 -0.0 77 79-159 3-82 (109)
34 cd03001 PDI_a_P5 PDIa family, 99.4 9.1E-15 2E-19 101.8 -0.3 71 86-159 6-79 (103)
35 cd02950 TxlA TRX-like protein 99.4 1.1E-14 2.5E-19 109.2 -1.3 70 86-159 9-83 (142)
36 PTZ00443 Thioredoxin domain-co 99.4 1.6E-14 3.4E-19 116.3 -0.6 80 79-159 30-113 (224)
37 cd03005 PDI_a_ERp46 PDIa famil 99.4 3E-14 6.5E-19 99.0 0.1 72 82-159 3-80 (102)
38 cd02952 TRP14_like Human TRX-r 99.4 2.6E-14 5.7E-19 104.8 -0.5 74 84-159 6-97 (119)
39 cd02997 PDI_a_PDIR PDIa family 99.4 5.8E-14 1.3E-18 97.8 -0.1 73 82-159 3-82 (104)
40 cd02992 PDI_a_QSOX PDIa family 99.4 4.1E-14 8.9E-19 102.3 -0.9 75 81-159 3-85 (114)
41 cd03000 PDI_a_TMX3 PDIa family 99.4 5.8E-14 1.3E-18 99.1 -0.5 68 87-159 6-79 (104)
42 cd02953 DsbDgamma DsbD gamma f 99.4 4E-14 8.6E-19 99.7 -1.6 68 88-159 2-79 (104)
43 TIGR01126 pdi_dom protein disu 99.4 9E-14 2E-18 96.2 -0.3 70 86-159 2-76 (102)
44 TIGR00424 APS_reduc 5'-adenyly 99.3 1.1E-13 2.4E-18 121.6 -0.2 78 80-159 352-435 (463)
45 PLN02309 5'-adenylylsulfate re 99.3 1.3E-13 2.8E-18 120.9 -0.6 78 80-159 346-429 (457)
46 cd02975 PfPDO_like_N Pyrococcu 99.3 1.5E-13 3.2E-18 99.3 -0.3 61 99-159 20-82 (113)
47 cd02998 PDI_a_ERp38 PDIa famil 99.3 2.8E-13 6E-18 94.1 1.1 71 86-159 6-82 (105)
48 TIGR01068 thioredoxin thioredo 99.3 1.7E-13 3.7E-18 94.3 -0.1 71 86-159 2-75 (101)
49 KOG0190 Protein disulfide isom 99.3 2.8E-13 6.2E-18 119.1 1.0 77 79-159 24-106 (493)
50 cd02959 ERp19 Endoplasmic reti 99.3 7E-14 1.5E-18 101.8 -2.4 71 89-159 7-83 (117)
51 cd02988 Phd_like_VIAF Phosduci 99.3 1.7E-13 3.6E-18 108.0 -0.5 80 76-159 79-159 (192)
52 cd02961 PDI_a_family Protein D 99.3 3.8E-13 8.2E-18 91.7 -0.8 70 86-159 4-78 (101)
53 cd02951 SoxW SoxW family; SoxW 99.3 2.9E-13 6.4E-18 98.3 -2.4 63 97-159 9-91 (125)
54 cd02949 TRX_NTR TRX domain, no 99.3 7.1E-13 1.5E-17 92.5 -0.4 61 99-159 11-74 (97)
55 TIGR01295 PedC_BrcD bacterioci 99.2 1.7E-12 3.7E-17 95.2 0.9 55 85-144 11-65 (122)
56 PRK00293 dipZ thiol:disulfide 99.2 1.2E-12 2.6E-17 117.8 -1.0 82 78-159 451-541 (571)
57 PTZ00102 disulphide isomerase; 99.2 2.3E-12 4.9E-17 112.0 0.8 77 79-159 357-438 (477)
58 cd02947 TRX_family TRX family; 99.2 3E-12 6.5E-17 85.4 -0.0 68 88-159 1-70 (93)
59 PTZ00062 glutaredoxin; Provisi 99.2 3.3E-12 7.2E-17 101.5 -0.8 65 85-159 4-69 (204)
60 TIGR01130 ER_PDI_fam protein d 99.1 6.9E-12 1.5E-16 107.8 0.4 76 79-159 346-426 (462)
61 KOG4277 Uncharacterized conser 99.1 8.3E-12 1.8E-16 104.1 0.3 61 99-159 41-107 (468)
62 TIGR01130 ER_PDI_fam protein d 99.1 8.2E-12 1.8E-16 107.3 -0.4 71 85-159 6-82 (462)
63 cd02955 SSP411 TRX domain, SSP 99.1 7.8E-12 1.7E-16 92.2 -0.5 65 95-159 9-87 (124)
64 cd03007 PDI_a_ERp29_N PDIa fam 99.1 1.3E-11 2.7E-16 90.2 0.5 71 81-159 3-87 (116)
65 PTZ00102 disulphide isomerase; 99.1 9.4E-12 2E-16 108.2 -0.5 75 80-159 33-113 (477)
66 PF13899 Thioredoxin_7: Thiore 99.1 1.2E-12 2.7E-17 89.0 -5.0 72 88-159 4-80 (82)
67 cd02973 TRX_GRX_like Thioredox 99.1 2.4E-11 5.2E-16 79.0 -0.1 55 104-158 2-58 (67)
68 cd02982 PDI_b'_family Protein 99.0 3.7E-11 8E-16 83.7 -0.5 58 101-158 12-74 (103)
69 TIGR00411 redox_disulf_1 small 99.0 4.5E-11 9.7E-16 80.0 -0.3 54 104-157 2-58 (82)
70 cd03008 TryX_like_RdCVF Trypar 99.0 1.4E-10 3.1E-15 87.7 1.1 46 100-145 24-78 (146)
71 PHA02125 thioredoxin-like prot 99.0 7.1E-11 1.5E-15 79.2 -1.1 48 105-157 2-51 (75)
72 PF13905 Thioredoxin_8: Thiore 98.9 1.5E-10 3.2E-15 79.8 0.4 48 101-148 1-51 (95)
73 cd02960 AGR Anterior Gradient 98.9 6E-11 1.3E-15 88.2 -2.9 72 88-159 10-86 (130)
74 TIGR02738 TrbB type-F conjugat 98.9 3.2E-10 6.9E-15 86.4 0.8 42 101-143 50-91 (153)
75 TIGR00412 redox_disulf_2 small 98.9 1.5E-10 3.2E-15 78.0 -1.2 51 105-157 2-54 (76)
76 cd02967 mauD Methylamine utili 98.9 9.2E-10 2E-14 78.0 1.7 39 100-138 20-59 (114)
77 TIGR02187 GlrX_arch Glutaredox 98.8 6.4E-10 1.4E-14 88.4 0.6 57 103-159 135-193 (215)
78 PRK15412 thiol:disulfide inter 98.8 1.1E-09 2.4E-14 85.1 1.5 44 100-145 67-110 (185)
79 KOG0191 Thioredoxin/protein di 98.8 5.9E-10 1.3E-14 95.6 -0.1 61 99-159 45-108 (383)
80 cd02964 TryX_like_family Trypa 98.8 1.1E-09 2.5E-14 80.2 1.2 45 100-144 16-64 (132)
81 TIGR02187 GlrX_arch Glutaredox 98.8 7E-10 1.5E-14 88.1 -0.3 57 103-159 21-84 (215)
82 TIGR02740 TraF-like TraF-like 98.8 8.9E-10 1.9E-14 91.0 -0.2 59 100-159 165-236 (271)
83 cd03010 TlpA_like_DsbE TlpA-li 98.8 2.6E-09 5.7E-14 77.3 1.5 44 100-144 24-67 (127)
84 cd03009 TryX_like_TryX_NRX Try 98.8 2.3E-09 4.9E-14 78.2 1.2 45 100-144 17-65 (131)
85 KOG0912 Thiol-disulfide isomer 98.7 1.2E-09 2.7E-14 91.1 -0.9 69 87-159 3-79 (375)
86 PTZ00056 glutathione peroxidas 98.7 1.6E-09 3.5E-14 85.5 -0.5 42 100-141 38-81 (199)
87 PRK14018 trifunctional thiored 98.7 2.6E-09 5.7E-14 95.2 0.2 42 99-140 54-97 (521)
88 cd03012 TlpA_like_DipZ_like Tl 98.7 2.6E-09 5.7E-14 77.6 -0.0 41 100-140 22-64 (126)
89 KOG1731 FAD-dependent sulfhydr 98.7 1.5E-09 3.2E-14 96.6 -2.4 77 79-159 39-123 (606)
90 TIGR00385 dsbE periplasmic pro 98.6 1.1E-08 2.3E-13 78.7 1.7 42 100-143 62-103 (173)
91 PF13098 Thioredoxin_2: Thiore 98.6 2.2E-09 4.8E-14 75.9 -2.0 47 98-144 2-52 (112)
92 PRK13728 conjugal transfer pro 98.6 4.5E-09 9.8E-14 82.2 -0.7 38 105-143 73-110 (181)
93 PLN02399 phospholipid hydroper 98.6 5.7E-09 1.2E-13 84.8 -0.1 42 100-141 98-141 (236)
94 TIGR02540 gpx7 putative glutat 98.6 6.3E-09 1.4E-13 78.2 -0.1 41 100-140 21-63 (153)
95 KOG0191 Thioredoxin/protein di 98.6 1E-08 2.2E-13 88.0 0.9 75 81-159 146-225 (383)
96 cd02966 TlpA_like_family TlpA- 98.6 1.8E-08 3.8E-13 69.4 2.0 44 100-143 18-63 (116)
97 PF08534 Redoxin: Redoxin; In 98.6 3.6E-09 7.8E-14 78.2 -2.0 50 100-149 27-79 (146)
98 COG4232 Thiol:disulfide interc 98.6 1.3E-08 2.8E-13 91.0 0.0 76 82-159 457-541 (569)
99 PLN02412 probable glutathione 98.6 1.2E-08 2.6E-13 78.3 -0.2 42 100-141 28-71 (167)
100 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 1.6E-08 3.4E-13 70.3 0.3 57 101-157 12-70 (89)
101 cd00340 GSH_Peroxidase Glutath 98.5 2.5E-08 5.3E-13 75.0 1.2 41 100-141 21-63 (152)
102 PLN02919 haloacid dehalogenase 98.5 2.1E-08 4.5E-13 96.1 0.3 40 100-139 419-460 (1057)
103 COG0526 TrxA Thiol-disulfide i 98.5 5.2E-08 1.1E-12 66.0 1.7 57 101-157 32-94 (127)
104 TIGR01626 ytfJ_HI0045 conserve 98.5 1.2E-07 2.5E-12 74.5 3.4 66 77-145 36-107 (184)
105 PRK03147 thiol-disulfide oxido 98.5 4.9E-08 1.1E-12 73.8 1.2 46 100-145 60-107 (173)
106 TIGR02661 MauD methylamine deh 98.4 5.3E-08 1.1E-12 76.1 1.1 42 100-142 73-114 (189)
107 cd03014 PRX_Atyp2cys Peroxired 98.4 1.4E-07 3.1E-12 69.5 1.4 47 100-146 25-72 (143)
108 PTZ00256 glutathione peroxidas 98.3 8.2E-08 1.8E-12 74.5 -0.6 42 100-141 39-83 (183)
109 cd02958 UAS UAS family; UAS is 98.3 7.9E-08 1.7E-12 68.9 -0.9 72 88-159 4-83 (114)
110 KOG0914 Thioredoxin-like prote 98.3 2.6E-07 5.7E-12 74.1 2.0 71 77-149 122-194 (265)
111 cd03011 TlpA_like_ScsD_MtbDsbE 98.3 3.7E-07 7.9E-12 65.3 2.1 31 100-130 19-49 (123)
112 PRK10606 btuE putative glutath 98.3 1.8E-07 3.8E-12 73.3 0.0 41 100-141 24-66 (183)
113 smart00594 UAS UAS domain. 98.3 6.3E-08 1.4E-12 70.6 -2.5 73 87-159 13-93 (122)
114 cd01659 TRX_superfamily Thiore 98.3 1.8E-07 4E-12 56.6 -0.0 54 105-158 1-59 (69)
115 PRK00522 tpx lipid hydroperoxi 98.2 5.3E-07 1.1E-11 69.0 1.4 48 100-147 43-91 (167)
116 cd02970 PRX_like2 Peroxiredoxi 98.2 2.6E-07 5.6E-12 67.8 -1.0 47 101-147 24-72 (149)
117 cd02969 PRX_like1 Peroxiredoxi 98.1 1.2E-06 2.7E-11 66.7 1.6 43 100-142 24-68 (171)
118 TIGR02200 GlrX_actino Glutared 98.1 6.7E-07 1.5E-11 58.7 0.1 48 105-157 2-56 (77)
119 PF00578 AhpC-TSA: AhpC/TSA fa 98.1 6.1E-07 1.3E-11 64.0 -0.2 50 100-149 24-76 (124)
120 cd03018 PRX_AhpE_like Peroxire 98.1 4.3E-07 9.4E-12 67.0 -1.3 48 102-149 29-79 (149)
121 cd03017 PRX_BCP Peroxiredoxin 98.0 5.4E-07 1.2E-11 65.7 -1.2 49 101-149 23-74 (140)
122 PF03190 Thioredox_DsbH: Prote 98.0 2.3E-07 5E-12 71.5 -3.3 60 92-151 28-91 (163)
123 cd02968 SCO SCO (an acronym fo 98.0 2.1E-06 4.6E-11 62.7 1.8 44 100-143 21-70 (142)
124 KOG2501 Thioredoxin, nucleored 98.0 3.7E-06 8.1E-11 64.3 2.6 50 100-149 32-86 (157)
125 TIGR02180 GRX_euk Glutaredoxin 98.0 1.8E-06 3.9E-11 57.7 0.7 39 105-144 1-39 (84)
126 TIGR02196 GlrX_YruB Glutaredox 98.0 1.4E-06 3.1E-11 56.1 0.0 49 105-158 2-56 (74)
127 PRK09437 bcp thioredoxin-depen 97.9 1.5E-06 3.2E-11 64.9 -1.3 50 100-149 29-81 (154)
128 TIGR03137 AhpC peroxiredoxin. 97.9 2.7E-06 5.9E-11 66.3 0.0 46 100-145 30-78 (187)
129 PRK11200 grxA glutaredoxin 1; 97.9 3.1E-06 6.7E-11 57.6 0.3 40 104-143 2-41 (85)
130 cd03015 PRX_Typ2cys Peroxiredo 97.9 3.4E-06 7.3E-11 64.6 0.1 46 100-145 28-76 (173)
131 cd02971 PRX_family Peroxiredox 97.8 4.2E-06 9E-11 60.9 0.2 50 100-149 21-73 (140)
132 KOG3425 Uncharacterized conser 97.7 8.3E-06 1.8E-10 59.7 0.7 59 85-144 10-77 (128)
133 KOG0913 Thiol-disulfide isomer 97.7 8.4E-06 1.8E-10 65.9 0.7 65 81-151 25-92 (248)
134 PF06110 DUF953: Eukaryotic pr 97.7 8.6E-06 1.9E-10 59.7 -0.3 59 84-142 2-68 (119)
135 PF02114 Phosducin: Phosducin; 97.6 1E-05 2.2E-10 66.8 -0.2 81 77-158 123-204 (265)
136 TIGR02183 GRXA Glutaredoxin, G 97.6 2.3E-05 4.9E-10 53.7 0.6 39 105-143 2-40 (86)
137 PF14595 Thioredoxin_9: Thiore 97.5 6.3E-06 1.4E-10 61.1 -2.8 60 100-159 40-104 (129)
138 cd02976 NrdH NrdH-redoxin (Nrd 97.5 2.4E-05 5.2E-10 50.2 0.2 49 105-158 2-56 (73)
139 KOG0911 Glutaredoxin-related p 97.5 9.6E-06 2.1E-10 65.1 -2.1 63 81-149 3-65 (227)
140 KOG3414 Component of the U4/U6 97.5 1.4E-05 3.1E-10 59.1 -1.3 75 84-160 8-85 (142)
141 PRK10382 alkyl hydroperoxide r 97.5 3.2E-05 7E-10 60.6 0.6 47 100-146 30-79 (187)
142 KOG1672 ATP binding protein [P 97.4 4.4E-05 9.6E-10 60.3 0.4 80 75-158 62-143 (211)
143 cd03419 GRX_GRXh_1_2_like Glut 97.4 6E-05 1.3E-09 50.1 0.8 36 105-143 2-37 (82)
144 PF13728 TraF: F plasmid trans 97.3 4.5E-05 9.8E-10 61.1 -0.6 58 101-159 120-190 (215)
145 cd02066 GRX_family Glutaredoxi 97.3 6.9E-05 1.5E-09 47.6 0.4 37 105-146 2-38 (72)
146 PRK13599 putative peroxiredoxi 97.3 3.9E-05 8.5E-10 61.4 -1.3 45 101-145 28-75 (215)
147 cd03016 PRX_1cys Peroxiredoxin 97.2 3.5E-05 7.7E-10 60.8 -1.6 42 103-144 28-71 (203)
148 PRK15000 peroxidase; Provision 97.2 8.3E-05 1.8E-09 58.8 0.2 45 100-144 33-80 (200)
149 cd03023 DsbA_Com1_like DsbA fa 97.2 0.00013 2.8E-09 53.3 1.2 42 99-140 3-44 (154)
150 PRK13190 putative peroxiredoxi 97.1 0.0001 2.2E-09 58.2 -0.0 44 101-144 27-73 (202)
151 PTZ00137 2-Cys peroxiredoxin; 97.0 0.00021 4.6E-09 58.9 0.3 44 100-143 97-143 (261)
152 PRK13191 putative peroxiredoxi 96.9 0.0002 4.3E-09 57.3 -0.1 45 101-145 33-80 (215)
153 PRK11509 hydrogenase-1 operon 96.9 0.00024 5.1E-09 53.0 0.3 68 88-159 25-98 (132)
154 TIGR02190 GlrX-dom Glutaredoxi 96.9 0.00024 5.3E-09 47.6 -0.0 51 102-157 7-62 (79)
155 PF02966 DIM1: Mitosis protein 96.7 0.00011 2.4E-09 54.7 -3.0 75 83-159 4-81 (133)
156 PRK13189 peroxiredoxin; Provis 96.7 0.00038 8.2E-09 55.9 -0.1 44 101-144 35-81 (222)
157 PF05768 DUF836: Glutaredoxin- 96.7 0.00028 6E-09 47.8 -0.8 53 105-158 2-55 (81)
158 PRK10329 glutaredoxin-like pro 96.6 0.0006 1.3E-08 46.4 0.4 39 105-148 3-41 (81)
159 PTZ00253 tryparedoxin peroxida 96.6 0.0006 1.3E-08 53.5 0.3 46 100-145 35-83 (199)
160 cd03418 GRX_GRXb_1_3_like Glut 96.5 0.00071 1.5E-08 44.2 0.4 37 105-146 2-38 (75)
161 TIGR02194 GlrX_NrdH Glutaredox 96.5 0.00059 1.3E-08 44.8 -0.1 48 105-157 1-53 (72)
162 cd03027 GRX_DEP Glutaredoxin ( 96.5 0.00053 1.1E-08 45.1 -0.3 49 105-158 3-57 (73)
163 PHA03050 glutaredoxin; Provisi 96.5 0.0011 2.3E-08 47.7 1.2 35 105-139 15-49 (108)
164 TIGR02181 GRX_bact Glutaredoxi 96.3 0.001 2.2E-08 44.2 -0.1 37 105-146 1-37 (79)
165 TIGR00365 monothiol glutaredox 96.2 0.0021 4.5E-08 45.1 1.2 42 103-149 13-58 (97)
166 COG1331 Highly conserved prote 96.2 0.0011 2.3E-08 60.9 -0.4 63 87-153 33-99 (667)
167 PF00462 Glutaredoxin: Glutare 96.1 0.0029 6.3E-08 39.9 1.5 38 105-147 1-38 (60)
168 cd03028 GRX_PICOT_like Glutare 96.0 0.0027 6E-08 43.7 1.1 43 102-149 8-54 (90)
169 TIGR02189 GlrX-like_plant Glut 96.0 0.0023 5E-08 45.0 0.5 36 105-145 10-45 (99)
170 TIGR02739 TraF type-F conjugat 95.9 0.0023 5E-08 52.7 0.2 42 101-143 150-191 (256)
171 PF13192 Thioredoxin_3: Thiore 95.8 0.0013 2.9E-08 43.8 -1.2 50 107-157 4-54 (76)
172 cd03019 DsbA_DsbA DsbA family, 95.8 0.004 8.7E-08 46.8 1.2 41 100-140 14-55 (178)
173 cd03029 GRX_hybridPRX5 Glutare 95.7 0.002 4.3E-08 42.1 -0.6 36 105-145 3-38 (72)
174 PRK13703 conjugal pilus assemb 95.6 0.0031 6.8E-08 51.7 0.1 41 101-142 143-183 (248)
175 cd02991 UAS_ETEA UAS family, E 95.6 0.0017 3.8E-08 47.1 -1.4 69 89-158 5-82 (116)
176 PRK10638 glutaredoxin 3; Provi 95.4 0.0054 1.2E-07 41.3 0.6 37 105-146 4-40 (83)
177 PF11009 DUF2847: Protein of u 95.1 0.003 6.5E-08 45.4 -1.6 65 82-148 2-67 (105)
178 PTZ00062 glutaredoxin; Provisi 94.7 0.007 1.5E-07 48.2 -0.4 35 110-149 125-159 (204)
179 TIGR03143 AhpF_homolog putativ 94.7 0.0051 1.1E-07 55.4 -1.3 57 101-157 475-534 (555)
180 PRK15317 alkyl hydroperoxide r 94.7 0.0093 2E-07 53.1 0.1 55 103-157 118-174 (517)
181 PRK10954 periplasmic protein d 94.6 0.021 4.6E-07 45.0 1.9 41 101-141 37-81 (207)
182 cd02972 DsbA_family DsbA famil 94.5 0.015 3.1E-07 38.6 0.7 36 105-140 1-37 (98)
183 PRK10824 glutaredoxin-4; Provi 94.5 0.019 4.2E-07 41.8 1.4 43 102-149 15-61 (115)
184 PF13462 Thioredoxin_4: Thiore 94.2 0.011 2.3E-07 43.7 -0.5 42 99-140 10-54 (162)
185 cd03020 DsbA_DsbC_DsbG DsbA fa 93.9 0.039 8.4E-07 42.9 2.1 27 99-125 75-101 (197)
186 KOG3170 Conserved phosducin-li 93.9 0.02 4.4E-07 45.8 0.5 62 77-140 89-150 (240)
187 KOG1752 Glutaredoxin and relat 93.8 0.025 5.3E-07 40.5 0.8 42 105-149 16-58 (104)
188 COG0695 GrxC Glutaredoxin and 93.3 0.012 2.7E-07 39.7 -1.4 35 105-144 3-37 (80)
189 PF00837 T4_deiodinase: Iodoth 92.7 0.026 5.7E-07 46.0 -0.6 66 75-142 78-144 (237)
190 PRK10877 protein disulfide iso 92.6 0.057 1.2E-06 43.6 1.3 38 99-138 105-142 (232)
191 TIGR03140 AhpF alkyl hydropero 91.7 0.052 1.1E-06 48.4 0.1 56 102-157 118-175 (515)
192 PRK12759 bifunctional gluaredo 91.4 0.074 1.6E-06 46.5 0.7 37 105-146 4-40 (410)
193 PHA03075 glutaredoxin-like pro 90.9 0.08 1.7E-06 38.7 0.4 30 102-131 2-31 (123)
194 cd03013 PRX5_like Peroxiredoxi 90.7 0.091 2E-06 39.6 0.6 48 101-148 30-81 (155)
195 KOG3171 Conserved phosducin-li 90.6 0.16 3.4E-06 41.2 1.8 81 77-158 136-217 (273)
196 PRK11657 dsbG disulfide isomer 90.6 0.16 3.4E-06 41.5 1.9 40 99-139 115-154 (251)
197 cd02977 ArsC_family Arsenate R 89.6 0.15 3.2E-06 35.7 0.8 35 105-144 1-35 (105)
198 PF07449 HyaE: Hydrogenase-1 e 88.7 0.15 3.2E-06 36.8 0.3 73 81-159 11-89 (107)
199 cd02981 PDI_b_family Protein D 87.4 0.26 5.7E-06 33.3 0.9 51 82-139 2-53 (97)
200 PF13848 Thioredoxin_6: Thiore 86.6 0.26 5.5E-06 36.9 0.5 73 82-158 79-157 (184)
201 KOG2603 Oligosaccharyltransfer 85.9 0.82 1.8E-05 38.8 3.2 79 76-156 37-130 (331)
202 KOG2244 Highly conserved prote 85.5 0.23 4.9E-06 45.3 -0.2 65 87-155 102-170 (786)
203 TIGR01617 arsC_related transcr 85.1 0.43 9.3E-06 34.2 1.1 36 106-146 2-37 (117)
204 cd03031 GRX_GRX_like Glutaredo 85.1 0.52 1.1E-05 35.7 1.5 37 105-146 2-44 (147)
205 PRK01655 spxA transcriptional 84.8 0.45 9.8E-06 35.0 1.1 36 105-145 2-37 (131)
206 cd03036 ArsC_like Arsenate Red 83.4 0.5 1.1E-05 33.6 0.8 34 106-144 2-35 (111)
207 cd03035 ArsC_Yffb Arsenate Red 82.9 0.56 1.2E-05 33.2 0.9 35 105-144 1-35 (105)
208 COG1225 Bcp Peroxiredoxin [Pos 82.3 0.43 9.4E-06 36.6 0.1 51 99-149 28-81 (157)
209 COG2143 Thioredoxin-related pr 78.1 0.74 1.6E-05 35.6 0.2 45 97-141 38-86 (182)
210 TIGR03143 AhpF_homolog putativ 77.2 0.44 9.6E-06 43.0 -1.5 76 79-156 346-423 (555)
211 cd03032 ArsC_Spx Arsenate Redu 77.1 1.4 3E-05 31.4 1.4 35 105-144 2-36 (115)
212 PRK12559 transcriptional regul 76.8 1.3 2.9E-05 32.6 1.3 35 105-144 2-36 (131)
213 PF06053 DUF929: Domain of unk 74.5 2 4.3E-05 35.4 1.8 35 99-133 56-90 (249)
214 COG1651 DsbG Protein-disulfide 70.5 2.4 5.2E-05 33.6 1.4 40 100-139 83-122 (244)
215 cd03072 PDI_b'_ERp44 PDIb' fam 69.3 2.1 4.5E-05 30.5 0.7 58 86-149 5-66 (111)
216 COG1999 Uncharacterized protei 68.2 4.2 9.1E-05 32.2 2.3 51 99-149 65-121 (207)
217 cd03060 GST_N_Omega_like GST_N 68.1 2.3 5.1E-05 27.1 0.7 33 106-141 2-34 (71)
218 cd02983 P5_C P5 family, C-term 68.0 4 8.7E-05 29.9 2.0 74 80-157 3-86 (130)
219 PF13743 Thioredoxin_5: Thiore 63.8 1.4 3.1E-05 33.8 -1.1 32 107-138 2-34 (176)
220 PF04592 SelP_N: Selenoprotein 62.6 2.6 5.7E-05 34.4 0.1 44 99-142 24-72 (238)
221 COG0386 BtuE Glutathione perox 62.2 1.8 4E-05 33.3 -0.8 57 99-156 23-94 (162)
222 PRK13344 spxA transcriptional 62.0 4 8.7E-05 30.1 1.0 35 105-144 2-36 (132)
223 PF02630 SCO1-SenC: SCO1/SenC; 59.8 3.1 6.7E-05 31.8 0.1 42 100-141 51-97 (174)
224 cd03025 DsbA_FrnE_like DsbA fa 58.6 3.3 7.1E-05 31.3 0.1 27 105-131 3-29 (193)
225 PF01323 DSBA: DSBA-like thior 57.6 1.7 3.6E-05 32.8 -1.7 37 104-140 1-39 (193)
226 COG4545 Glutaredoxin-related p 55.9 3.5 7.6E-05 28.1 -0.2 25 106-130 5-29 (85)
227 PF01216 Calsequestrin: Calseq 55.3 3.7 8E-05 35.6 -0.2 70 76-151 31-110 (383)
228 cd03073 PDI_b'_ERp72_ERp57 PDI 53.5 4.3 9.4E-05 28.9 -0.0 37 115-151 32-71 (111)
229 cd00570 GST_N_family Glutathio 53.4 6.2 0.00013 23.6 0.7 32 107-141 3-34 (71)
230 cd03051 GST_N_GTT2_like GST_N 52.8 6.6 0.00014 24.5 0.8 31 107-140 3-33 (74)
231 KOG2640 Thioredoxin [Function 52.1 5 0.00011 34.1 0.1 34 99-132 74-107 (319)
232 cd03040 GST_N_mPGES2 GST_N fam 51.1 3.4 7.3E-05 26.6 -0.9 25 106-130 3-27 (77)
233 cd03067 PDI_b_PDIR_N PDIb fami 47.2 8 0.00017 27.8 0.5 63 82-149 4-69 (112)
234 cd03037 GST_N_GRX2 GST_N famil 46.4 4.6 9.9E-05 25.6 -0.8 24 107-130 3-26 (71)
235 cd03059 GST_N_SspA GST_N famil 45.0 8.4 0.00018 24.1 0.3 33 106-141 2-34 (73)
236 cd03045 GST_N_Delta_Epsilon GS 45.0 13 0.00028 23.4 1.2 32 107-141 3-34 (74)
237 PF00255 GSHPx: Glutathione pe 29.2 22 0.00048 25.4 0.4 43 99-142 19-63 (108)
238 PF04134 DUF393: Protein of un 28.8 16 0.00035 25.4 -0.3 30 108-138 2-31 (114)
239 PF14421 LmjF365940-deam: A di 26.6 20 0.00043 28.3 -0.2 26 113-141 157-182 (193)
240 PF14424 Toxin-deaminase: The 25.6 30 0.00065 25.6 0.6 30 106-138 99-130 (133)
241 cd00862 ProRS_anticodon_zinc P 25.6 41 0.0009 26.3 1.4 29 81-117 128-158 (202)
242 KOG4163 Prolyl-tRNA synthetase 25.3 35 0.00076 30.7 1.1 32 76-115 462-493 (551)
243 cd03041 GST_N_2GST_N GST_N fam 23.9 17 0.00037 23.5 -0.9 25 106-130 3-27 (77)
244 cd00307 RuBisCO_small_like Rib 23.4 22 0.00048 24.4 -0.4 35 107-141 27-71 (84)
245 cd03056 GST_N_4 GST_N family, 22.6 41 0.00088 20.7 0.7 31 107-140 3-33 (73)
246 cd03034 ArsC_ArsC Arsenate Red 22.6 41 0.0009 23.7 0.8 34 106-144 2-35 (112)
247 cd03033 ArsC_15kD Arsenate Red 21.8 23 0.0005 25.3 -0.6 33 105-142 2-34 (113)
248 TIGR00014 arsC arsenate reduct 20.9 48 0.001 23.5 0.9 34 106-144 2-35 (114)
249 cd03055 GST_N_Omega GST_N fami 20.3 47 0.001 22.0 0.7 35 105-142 19-53 (89)
250 COG3019 Predicted metal-bindin 20.3 53 0.0011 24.9 1.0 41 103-148 26-66 (149)
No 1
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.3e-19 Score=130.32 Aligned_cols=77 Identities=27% Similarity=0.540 Sum_probs=63.7
Q ss_pred EeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHH-HHHH-Hhhhhcc
Q 031381 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWR-FWMH-FLIVFFS 159 (160)
Q Consensus 83 ~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~-~~v~-~pv~~f~ 159 (160)
.+.+.++|+..+..+...++++||+|||+||||||.|.|.+++|+++|+++.|++||+|+..++++ +.++ +|++.|+
T Consensus 3 ~v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~ 81 (106)
T KOG0907|consen 3 EVETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFY 81 (106)
T ss_pred eEEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEE
Confidence 344556666666666677899999999999999999999999999999999999999999777754 5665 7887663
No 2
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.1e-19 Score=133.53 Aligned_cols=78 Identities=26% Similarity=0.592 Sum_probs=69.8
Q ss_pred cceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhH-HHHHH-Hhh
Q 031381 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIW-RFWMH-FLI 155 (160)
Q Consensus 79 ~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~-~~~v~-~pv 155 (160)
.....+.+.++|++.+. +.+.||+|+|||+||+|||.|.|.++++.++|.| +.+++||+|++.+++ +|.++ +|+
T Consensus 42 ~~~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPt 118 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPT 118 (150)
T ss_pred cccccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeE
Confidence 46777889999999984 6889999999999999999999999999999988 999999999999995 67887 688
Q ss_pred hhcc
Q 031381 156 VFFS 159 (160)
Q Consensus 156 ~~f~ 159 (160)
++.|
T Consensus 119 vlvf 122 (150)
T KOG0910|consen 119 VLVF 122 (150)
T ss_pred EEEE
Confidence 7764
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.71 E-value=6.5e-19 Score=128.20 Aligned_cols=71 Identities=17% Similarity=0.314 Sum_probs=61.6
Q ss_pred chhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHHH-Hhhhhcc
Q 031381 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWMH-FLIVFFS 159 (160)
Q Consensus 87 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v~-~pv~~f~ 159 (160)
.++|++.+.. +.++++||+|||+||++|+.|.|.+++++++|++ +.|++||+|+++++++ ++++ .|+++||
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~f 75 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFF 75 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 4678888742 4678999999999999999999999999999998 7999999999999964 5765 8998775
No 4
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.70 E-value=7.3e-19 Score=132.39 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=66.4
Q ss_pred EEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHHH-Hhhhhc
Q 031381 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWMH-FLIVFF 158 (160)
Q Consensus 82 ~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v~-~pv~~f 158 (160)
..+.+.++|++.+.. .+++++||+|||+||+||+.|.|.++++++++++ +.|++||+|+++++++ +.++ .|+++|
T Consensus 6 ~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ 83 (142)
T PLN00410 6 PHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMF 83 (142)
T ss_pred hhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEE
Confidence 456789999999853 4678999999999999999999999999999998 8889999999999965 5777 666665
Q ss_pred cC
Q 031381 159 SY 160 (160)
Q Consensus 159 ~~ 160 (160)
||
T Consensus 84 ff 85 (142)
T PLN00410 84 FF 85 (142)
T ss_pred EE
Confidence 54
No 5
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.70 E-value=9.1e-19 Score=127.18 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=63.8
Q ss_pred chhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHHH-HhhhhccC
Q 031381 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWMH-FLIVFFSY 160 (160)
Q Consensus 87 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v~-~pv~~f~~ 160 (160)
.++|++.+.. .++|++||+|||+||++|+.|.|.+++++++|++ +.|++||+|+.+++++ +.++ .|+++|++
T Consensus 2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffk 76 (114)
T cd02986 2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFF 76 (114)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEE
Confidence 4678888754 3689999999999999999999999999999999 9999999999999965 5777 89988764
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.68 E-value=7e-18 Score=122.47 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=66.1
Q ss_pred CcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhH--HHHH-HH
Q 031381 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIW--RFWM-HF 153 (160)
Q Consensus 78 ~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~--~~~v-~~ 153 (160)
.+.++++ +.++|++.+. ..++++++||+|||+||++|+.+.|.|+++++++++ +.|++||+|++.+++ ++.+ .|
T Consensus 8 ~~~v~~l-~~~~f~~~~~-v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDF-YKGQLDYAEE-LRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEe-chhhhHHHHh-cccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCccc
Confidence 4456666 5788888632 136788999999999999999999999999999987 999999999999886 3565 69
Q ss_pred hhhhcc
Q 031381 154 LIVFFS 159 (160)
Q Consensus 154 pv~~f~ 159 (160)
|++++|
T Consensus 86 PTl~lf 91 (113)
T cd03006 86 PVIHLY 91 (113)
T ss_pred CEEEEE
Confidence 998775
No 7
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.7e-18 Score=135.55 Aligned_cols=78 Identities=29% Similarity=0.584 Sum_probs=71.3
Q ss_pred ceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchh-HHHHHH-Hhhhh
Q 031381 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI-WRFWMH-FLIVF 157 (160)
Q Consensus 80 ~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l-~~~~v~-~pv~~ 157 (160)
+|+.|.+..+|+..+.. ..+|.++|+|+|.|||||+.++|.|+.|+.+|++.+|+|||+|+.+.. +.++|. +|+++
T Consensus 2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEE
Confidence 58899999999999975 578899999999999999999999999999999999999999999988 567885 99987
Q ss_pred cc
Q 031381 158 FS 159 (160)
Q Consensus 158 f~ 159 (160)
||
T Consensus 80 ff 81 (288)
T KOG0908|consen 80 FF 81 (288)
T ss_pred EE
Confidence 76
No 8
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.65 E-value=7.1e-18 Score=119.57 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=60.6
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccc---hhH-HHHHH-Hhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG---GIW-RFWMH-FLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~---~l~-~~~v~-~pv~~f~ 159 (160)
+.++|++.+.+ ..++++||+|||+||++|+.+.|.+++++++++++.|++||+|+++ +++ ++.++ +|+++|+
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 57899999853 3588999999999999999999999999999977999999999875 454 45664 8986554
No 9
>PHA02278 thioredoxin-like protein
Probab=99.64 E-value=1.7e-17 Score=118.57 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=58.8
Q ss_pred ecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeeccc----chhH-HHHH-HHhhhh
Q 031381 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQV----GGIW-RFWM-HFLIVF 157 (160)
Q Consensus 85 ~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~----~~l~-~~~v-~~pv~~ 157 (160)
++.++|++.+ ++++++||+|||+|||+|+.|.|.++++++++.+ +.|++||+|.+ ++++ ++.+ ..|+++
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 4678899988 4678999999999999999999999999988544 78999999986 4564 4566 489877
Q ss_pred cc
Q 031381 158 FS 159 (160)
Q Consensus 158 f~ 159 (160)
+|
T Consensus 78 ~f 79 (103)
T PHA02278 78 GY 79 (103)
T ss_pred EE
Confidence 65
No 10
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.64 E-value=3.5e-17 Score=118.36 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=69.6
Q ss_pred CCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHH-HHH-HHh
Q 031381 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWR-FWM-HFL 154 (160)
Q Consensus 77 ~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~-~~v-~~p 154 (160)
..+.+..+.+.++|++.+. +++++||+||++||++|+.+.|.+++++++|+++.|++||+++++++++ +.+ ..|
T Consensus 2 ~~g~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vP 77 (113)
T cd02989 2 GHGKYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLP 77 (113)
T ss_pred CCCCeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCC
Confidence 3567888988899999983 5679999999999999999999999999999999999999999999865 566 489
Q ss_pred hhhcc
Q 031381 155 IVFFS 159 (160)
Q Consensus 155 v~~f~ 159 (160)
+++++
T Consensus 78 t~l~f 82 (113)
T cd02989 78 TVILF 82 (113)
T ss_pred EEEEE
Confidence 88775
No 11
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.62 E-value=7.1e-17 Score=113.22 Aligned_cols=74 Identities=11% Similarity=0.230 Sum_probs=63.2
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHH-HHhhhh
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWM-HFLIVF 157 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v-~~pv~~ 157 (160)
++.+ +.++|++.+ +++++++|+|||+||++|+.+.|.|+++++++++ +.|++||+|+++++++ +.+ .||+++
T Consensus 3 ~~~l-~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 3 IVTL-DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLY 77 (101)
T ss_pred eEEc-CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEE
Confidence 4455 678999987 3558999999999999999999999999999987 8999999999999865 466 589976
Q ss_pred cc
Q 031381 158 FS 159 (160)
Q Consensus 158 f~ 159 (160)
++
T Consensus 78 ~~ 79 (101)
T cd03003 78 VF 79 (101)
T ss_pred EE
Confidence 64
No 12
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.61 E-value=7.4e-17 Score=114.05 Aligned_cols=72 Identities=18% Similarity=0.320 Sum_probs=60.0
Q ss_pred EeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEeeecccchh-HHHHHH-Hhhhhc
Q 031381 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQVGGI-WRFWMH-FLIVFF 158 (160)
Q Consensus 83 ~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDid~~~~l-~~~~v~-~pv~~f 158 (160)
.+.+.++|++++ ++++++||+|||+||++|+.+.|.++++++++++ +.|+++|+| +.++ .++.++ +|++++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLF 77 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEE
Confidence 467899999987 3678999999999999999999999999999864 889999999 4455 566674 788655
Q ss_pred c
Q 031381 159 S 159 (160)
Q Consensus 159 ~ 159 (160)
+
T Consensus 78 ~ 78 (102)
T cd02948 78 Y 78 (102)
T ss_pred E
Confidence 3
No 13
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.60 E-value=5.7e-17 Score=114.72 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=58.9
Q ss_pred hhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeec-ccchhH-HHHH-HHhhhhcc
Q 031381 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID-QVGGIW-RFWM-HFLIVFFS 159 (160)
Q Consensus 88 ~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid-~~~~l~-~~~v-~~pv~~f~ 159 (160)
+++.+++. ..+|+++||+|||+||++|+.+.|.|++++++++++.+++||.+ ++++++ ++.+ +||+++++
T Consensus 7 ~~~~~~~~--~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf 79 (100)
T cd02999 7 NIALDLMA--FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLF 79 (100)
T ss_pred hHHHHHHH--hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEE
Confidence 45555554 36789999999999999999999999999999999999999998 778775 4566 59998775
No 14
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.60 E-value=7.5e-17 Score=113.41 Aligned_cols=75 Identities=17% Similarity=0.412 Sum_probs=63.6
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHH-HHhhhh
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWM-HFLIVF 157 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v-~~pv~~ 157 (160)
++.+ +.++|++.+. +.+++++|+|||+||++|+.+.|.|+++++++.+ +.+++||+++++++++ +++ .+|+++
T Consensus 3 v~~l-~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 3 VITL-TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIR 78 (104)
T ss_pred ceEc-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEE
Confidence 3444 6789999874 4667999999999999999999999999999876 9999999999999865 566 489977
Q ss_pred cc
Q 031381 158 FS 159 (160)
Q Consensus 158 f~ 159 (160)
++
T Consensus 79 ~~ 80 (104)
T cd03004 79 LY 80 (104)
T ss_pred EE
Confidence 65
No 15
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.59 E-value=1.2e-16 Score=114.86 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=66.1
Q ss_pred CcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHH-HHH-HHhh
Q 031381 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWR-FWM-HFLI 155 (160)
Q Consensus 78 ~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~-~~v-~~pv 155 (160)
.+.+..+++ ++|++.+... +.++++||+||++||++|+.+.|.+++++++|+++.|++||++++ ++++ +.+ .+|+
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred CceEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 456777866 8999988431 225899999999999999999999999999999999999999998 7754 577 5899
Q ss_pred hhcc
Q 031381 156 VFFS 159 (160)
Q Consensus 156 ~~f~ 159 (160)
++++
T Consensus 80 ~~~f 83 (113)
T cd02957 80 LLVY 83 (113)
T ss_pred EEEE
Confidence 8765
No 16
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.55 E-value=3.2e-16 Score=108.53 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=58.9
Q ss_pred hhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHH-HHhhhhcc
Q 031381 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWM-HFLIVFFS 159 (160)
Q Consensus 88 ~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v-~~pv~~f~ 159 (160)
++|++.+.+ +.++++||+|||+||++|+.+.|.++++++.+++ +.+++||+|+++++++ +.+ .+|+++++
T Consensus 1 ~~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 73 (96)
T cd02956 1 QNFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLF 73 (96)
T ss_pred CChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEE
Confidence 357777742 4578999999999999999999999999999976 8999999999999865 455 48887764
No 17
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.53 E-value=1.4e-15 Score=111.65 Aligned_cols=80 Identities=11% Similarity=0.161 Sum_probs=67.0
Q ss_pred CCCcceEEeecchhhhcccCCccCCCcceeEeeeeccccc--ce--eeeeeccccccCC--Cc-eeeEEeeecccchhH-
Q 031381 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGP--CK--FIWPVIGELSAKH--PH-VTTYKIDIDQVGGIW- 147 (160)
Q Consensus 76 ~~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~--Ck--~l~p~~~~La~~~--~~-v~~~kVDid~~~~l~- 147 (160)
.+...++.+ +.++|++.+. +.+.++|++|||.||++ || ++.|.++++++++ ++ +.|++||+|++++++
T Consensus 6 ~~~~~v~~l-t~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~ 81 (120)
T cd03065 6 DGKDRVIDL-NEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAK 81 (120)
T ss_pred CCCcceeeC-ChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHH
Confidence 344556656 5799999984 67789999999999988 99 9999999999998 54 999999999999996
Q ss_pred HHHHH-Hhhhhcc
Q 031381 148 RFWMH-FLIVFFS 159 (160)
Q Consensus 148 ~~~v~-~pv~~f~ 159 (160)
+++++ +|++++|
T Consensus 82 ~~~I~~iPTl~lf 94 (120)
T cd03065 82 KLGLDEEDSIYVF 94 (120)
T ss_pred HcCCccccEEEEE
Confidence 55664 8998876
No 18
>PTZ00051 thioredoxin; Provisional
Probab=99.53 E-value=1.1e-15 Score=106.13 Aligned_cols=75 Identities=28% Similarity=0.459 Sum_probs=64.8
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHH-HHH-HHhhhhc
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWR-FWM-HFLIVFF 158 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~-~~v-~~pv~~f 158 (160)
+..+.+.++|++++ +.+++++|+||++||++|+.+.+.+++++++++++.++.+|++++.++++ +.+ .+|++++
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 56788889999987 46789999999999999999999999999999999999999999888854 455 4888654
Q ss_pred c
Q 031381 159 S 159 (160)
Q Consensus 159 ~ 159 (160)
+
T Consensus 78 ~ 78 (98)
T PTZ00051 78 F 78 (98)
T ss_pred E
Confidence 3
No 19
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.52 E-value=1e-15 Score=108.68 Aligned_cols=75 Identities=21% Similarity=0.410 Sum_probs=61.2
Q ss_pred ceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCC----C---ceeeEEeeecccchhHH-HHH
Q 031381 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH----P---HVTTYKIDIDQVGGIWR-FWM 151 (160)
Q Consensus 80 ~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~----~---~v~~~kVDid~~~~l~~-~~v 151 (160)
.++.+ +.++|++.+ +.++++||+|||+||++|+.+.|.|+++++++ + .+.+++||+|+++++++ +++
T Consensus 2 ~v~~l-~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v 76 (108)
T cd02996 2 EIVSL-TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI 76 (108)
T ss_pred ceEEc-CHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC
Confidence 34555 678999987 45679999999999999999999999888753 2 38999999999998854 566
Q ss_pred -HHhhhhcc
Q 031381 152 -HFLIVFFS 159 (160)
Q Consensus 152 -~~pv~~f~ 159 (160)
.||+++|+
T Consensus 77 ~~~Ptl~~~ 85 (108)
T cd02996 77 NKYPTLKLF 85 (108)
T ss_pred CcCCEEEEE
Confidence 59998764
No 20
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.52 E-value=6.6e-16 Score=106.98 Aligned_cols=74 Identities=24% Similarity=0.588 Sum_probs=64.2
Q ss_pred EeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC-ceeeEEeeecccchhHH-HHHH-Hhhhhcc
Q 031381 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQVGGIWR-FWMH-FLIVFFS 159 (160)
Q Consensus 83 ~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~-~v~~~kVDid~~~~l~~-~~v~-~pv~~f~ 159 (160)
...+.++|++.+. +.++++||+||++||++|+.+.|.|++++++++ ++.++.||+++++++++ +.++ +|+++++
T Consensus 2 ~~lt~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 2 IVLTDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp EEESTTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred EECCHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 3457899999985 357999999999999999999999999999998 59999999999988864 5664 8987764
No 21
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.52 E-value=1.5e-15 Score=107.18 Aligned_cols=71 Identities=18% Similarity=0.389 Sum_probs=60.6
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecc--cchhH-HHHH-HHhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQ--VGGIW-RFWM-HFLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~--~~~l~-~~~v-~~pv~~f~ 159 (160)
+.++|++.+. +.++++||+|||+||++|+.+.|.|+++++++.+ +.++.+|+++ +.+++ ++++ .+|+++++
T Consensus 6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 5788999884 5678999999999999999999999999999876 8999999998 77775 4566 48987765
No 22
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.52 E-value=1.4e-15 Score=118.10 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=67.6
Q ss_pred CCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchh-HHHHHH-Hh
Q 031381 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI-WRFWMH-FL 154 (160)
Q Consensus 77 ~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l-~~~~v~-~p 154 (160)
..+.++.+.+.++|.+.+.+. .++.++||+|||+||++|+.|.|.|++|+++|+++.|++||+++. ++ .++.++ .|
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vP 137 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALP 137 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCC
Confidence 457788887779999998532 234699999999999999999999999999999999999999987 55 456664 89
Q ss_pred hhhcc
Q 031381 155 IVFFS 159 (160)
Q Consensus 155 v~~f~ 159 (160)
+++++
T Consensus 138 Tllly 142 (175)
T cd02987 138 ALLVY 142 (175)
T ss_pred EEEEE
Confidence 87765
No 23
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.52 E-value=1.6e-15 Score=115.42 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=64.3
Q ss_pred cceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeecccchhHH-HHHH---
Q 031381 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIWR-FWMH--- 152 (160)
Q Consensus 79 ~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~~-~~v~--- 152 (160)
..++.+ +.++|++.+.. +.++++||+|||+||++|+.+.|.+++++++++ ++.|++||+|+++++++ +.+.
T Consensus 28 ~~v~~l-~~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYF-TPKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSP 104 (152)
T ss_pred CccEEc-CHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecC
Confidence 455555 56889998743 456799999999999999999999999999986 39999999999999965 5663
Q ss_pred ----Hhhhhcc
Q 031381 153 ----FLIVFFS 159 (160)
Q Consensus 153 ----~pv~~f~ 159 (160)
+|+++++
T Consensus 105 ~v~~~PT~ilf 115 (152)
T cd02962 105 LSKQLPTIILF 115 (152)
T ss_pred CcCCCCEEEEE
Confidence 7987664
No 24
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=9.2e-16 Score=126.88 Aligned_cols=77 Identities=23% Similarity=0.449 Sum_probs=66.0
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchh-HHHHHH-Hhhhh
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGI-WRFWMH-FLIVF 157 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l-~~~~v~-~pv~~ 157 (160)
++++ |..+|++.+.+ ....+||||+|||+||++|+.+.|.+++++++|.| +.++|||+|+++.+ .+++++ .|+++
T Consensus 25 I~dv-T~anfe~~V~~-~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 25 IKDV-TEANFEQEVIQ-SSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ceec-hHhHHHHHHHH-HccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 5555 68899988754 35667999999999999999999999999999998 99999999999999 467886 78776
Q ss_pred cc
Q 031381 158 FS 159 (160)
Q Consensus 158 f~ 159 (160)
.|
T Consensus 103 af 104 (304)
T COG3118 103 AF 104 (304)
T ss_pred Ee
Confidence 54
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.52 E-value=2e-15 Score=105.57 Aligned_cols=73 Identities=21% Similarity=0.471 Sum_probs=59.7
Q ss_pred ceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeecccchhH-HHHH-HHhh
Q 031381 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIW-RFWM-HFLI 155 (160)
Q Consensus 80 ~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~-~~~v-~~pv 155 (160)
.++.+ +.++|++++. ++ +||+|||+||++|+.+.|.|+++++.+. ++.+++||++++++++ ++.+ .+|+
T Consensus 2 ~v~~l-~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt 74 (101)
T cd02994 2 NVVEL-TDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPT 74 (101)
T ss_pred ceEEc-ChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCE
Confidence 35555 5889998762 22 7899999999999999999999998875 4999999999999886 4566 4899
Q ss_pred hhcc
Q 031381 156 VFFS 159 (160)
Q Consensus 156 ~~f~ 159 (160)
++++
T Consensus 75 ~~~~ 78 (101)
T cd02994 75 IYHA 78 (101)
T ss_pred EEEe
Confidence 7763
No 26
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.51 E-value=1.2e-15 Score=109.51 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=59.8
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeecccchhHH-HHH-HHhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIWR-FWM-HFLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~~-~~v-~~pv~~f~ 159 (160)
+.++|++.+-. ...++++||+|||+||++|+.+.|.+++++++++ ++.+++||+|+++.+++ +++ .+|+++++
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 56778764421 2468999999999999999999999999999996 38999999999888864 566 48987654
No 27
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.9e-15 Score=130.19 Aligned_cols=91 Identities=25% Similarity=0.385 Sum_probs=71.5
Q ss_pred ceeeeccccCC---CCCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc---eeeEEe
Q 031381 65 LQFHRTLFSSP---DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKI 138 (160)
Q Consensus 65 ~~~~~~~~s~~---~~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~---v~~~kV 138 (160)
....+.+.|++ ..+..-+.+...++|++++. +++|-|+|.|||+|||||++++|+|++|++.|.+ |+++|+
T Consensus 348 Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKm 424 (493)
T KOG0190|consen 348 GKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKM 424 (493)
T ss_pred CccccccccCCCCcccccCCeEEEeecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence 34456677765 33323344446899999984 7899999999999999999999999999999964 999999
Q ss_pred eecccchhH-HHHHHHhhhhcc
Q 031381 139 DIDQVGGIW-RFWMHFLIVFFS 159 (160)
Q Consensus 139 Did~~~~l~-~~~v~~pv~~f~ 159 (160)
|.+.|+--. ++.+ ||+++|+
T Consensus 425 DaTaNd~~~~~~~~-fPTI~~~ 445 (493)
T KOG0190|consen 425 DATANDVPSLKVDG-FPTILFF 445 (493)
T ss_pred ccccccCccccccc-cceEEEe
Confidence 999888654 4433 9998775
No 28
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.48 E-value=5.9e-15 Score=102.66 Aligned_cols=72 Identities=28% Similarity=0.462 Sum_probs=59.4
Q ss_pred ecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc---eeeEEeeecccchhHHHHH-HHhhhhcc
Q 031381 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQVGGIWRFWM-HFLIVFFS 159 (160)
Q Consensus 85 ~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~---v~~~kVDid~~~~l~~~~v-~~pv~~f~ 159 (160)
.+.++|++.+. +.+++++|+||++||++|+.+.|.++++++.+.+ +.++++|+++++....+.+ .+|+++++
T Consensus 5 l~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 5 VVGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred EchhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 35789999874 4568999999999999999999999999998765 9999999998854455554 58987654
No 29
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.47 E-value=7.1e-15 Score=106.49 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=61.7
Q ss_pred cchhhhcccCCccCCCcceeEeeeecc--cccceeeeeeccccccCCCc-eeeEEeeecccchhH-HHHHH-Hhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAW--CGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIW-RFWMH-FLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~W--C~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~-~~~v~-~pv~~f~ 159 (160)
+.++|++.+ +.+..+||+|||+| |++|+.+.|.+++++++|++ +.|++||+|++++++ +|.++ .|+++||
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~f 90 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFF 90 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence 678888887 46779999999997 99999999999999999988 889999999999985 56775 8998775
No 30
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.47 E-value=4.8e-15 Score=105.80 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=60.1
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEeeecc-cchhHH--HHH-HHhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQ-VGGIWR--FWM-HFLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDid~-~~~l~~--~~v-~~pv~~f~ 159 (160)
+.++|++++.. .+.+++++|.|||+||++|+.+.|.++++++.+.+ +.+++||+|. +..+++ +++ +||+++|+
T Consensus 7 ~~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f 85 (109)
T cd02993 7 SRAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF 85 (109)
T ss_pred cHHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE
Confidence 57799988742 35678999999999999999999999999998864 9999999997 456653 466 59998765
No 31
>PRK10996 thioredoxin 2; Provisional
Probab=99.46 E-value=7.8e-15 Score=109.56 Aligned_cols=80 Identities=24% Similarity=0.519 Sum_probs=66.2
Q ss_pred CCCCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhH-HHHH-
Q 031381 75 PDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIW-RFWM- 151 (160)
Q Consensus 75 ~~~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~-~~~v- 151 (160)
..-++.++.+ +.++|++++ +++++++|+|||+||++|+.+.|.|+++++++.+ +.++++|++++++++ ++++
T Consensus 31 ~~~~~~~i~~-~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~ 105 (139)
T PRK10996 31 DLFDGEVINA-TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIR 105 (139)
T ss_pred ccCCCCCEEc-CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCC
Confidence 4445566665 688999987 4578999999999999999999999999998865 999999999999986 4566
Q ss_pred HHhhhhcc
Q 031381 152 HFLIVFFS 159 (160)
Q Consensus 152 ~~pv~~f~ 159 (160)
.+|+++|+
T Consensus 106 ~~Ptlii~ 113 (139)
T PRK10996 106 SIPTIMIF 113 (139)
T ss_pred ccCEEEEE
Confidence 48987653
No 32
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.46 E-value=5.7e-15 Score=102.14 Aligned_cols=72 Identities=29% Similarity=0.429 Sum_probs=60.1
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccC-CCceeeEEeeecccchhH-HHHHH-Hhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK-HPHVTTYKIDIDQVGGIW-RFWMH-FLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~-~~~v~~~kVDid~~~~l~-~~~v~-~pv~~f~ 159 (160)
+.++|++++... .+++++|+||++||++|+.+.+.+++++++ ++++.++++|++++.+++ ++.++ +|+++|+
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 75 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFF 75 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEE
Confidence 457888888542 268999999999999999999999999999 556999999999988885 45664 8987664
No 33
>PRK09381 trxA thioredoxin; Provisional
Probab=99.46 E-value=8.3e-15 Score=103.87 Aligned_cols=77 Identities=25% Similarity=0.534 Sum_probs=63.1
Q ss_pred cceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHHH-Hhh
Q 031381 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWMH-FLI 155 (160)
Q Consensus 79 ~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v~-~pv 155 (160)
..++.+ +.++|++.+. +.+++++|+||++||++|+.+.|.++++++++++ +.++++|+++++.+++ +.++ +|+
T Consensus 3 ~~v~~~-~~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 78 (109)
T PRK09381 3 DKIIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 78 (109)
T ss_pred Ccceee-ChhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCE
Confidence 356666 4578887653 4578999999999999999999999999999976 9999999999988864 4664 788
Q ss_pred hhcc
Q 031381 156 VFFS 159 (160)
Q Consensus 156 ~~f~ 159 (160)
++|+
T Consensus 79 ~~~~ 82 (109)
T PRK09381 79 LLLF 82 (109)
T ss_pred EEEE
Confidence 6553
No 34
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.45 E-value=9.1e-15 Score=101.85 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=60.3
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHH-HHhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWM-HFLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v-~~pv~~f~ 159 (160)
+.++|++.+. +.+++++|+||++||++|+.+.|.|+++++++++ +.++++|+++++++++ +++ .+|+++++
T Consensus 6 ~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 6 TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 6788998874 4567899999999999999999999999999866 9999999999998865 466 48987654
No 35
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.42 E-value=1.1e-14 Score=109.18 Aligned_cols=70 Identities=21% Similarity=0.363 Sum_probs=56.3
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccc--hh-HHHHHH-Hhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVG--GI-WRFWMH-FLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~--~l-~~~~v~-~pv~~f~ 159 (160)
+..+|++.+ ..++++||+|||+||++|+.+.|.+++++++|.+ +.|+.||+|... .+ .+++++ +|+++|+
T Consensus 9 ~~~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~ 83 (142)
T cd02950 9 SSTPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFL 83 (142)
T ss_pred ccCCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEE
Confidence 345566655 5788999999999999999999999999999975 889999988653 44 556664 8988775
No 36
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.42 E-value=1.6e-14 Score=116.29 Aligned_cols=80 Identities=15% Similarity=0.336 Sum_probs=65.7
Q ss_pred cceEEeecchhhhcccCCc-cCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHH-HHh
Q 031381 79 SNILVIESGEEFNSSLGKV-KDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWM-HFL 154 (160)
Q Consensus 79 ~~v~~v~s~~~f~~~l~~a-~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v-~~p 154 (160)
+.++.+ +.++|++.+... ...+++++|+|||+||++|+.+.|.|+++++++++ +.++++|+++++++++ +++ .||
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 455656 688999987421 12468999999999999999999999999999987 9999999999999864 566 589
Q ss_pred hhhcc
Q 031381 155 IVFFS 159 (160)
Q Consensus 155 v~~f~ 159 (160)
+++++
T Consensus 109 Tl~~f 113 (224)
T PTZ00443 109 TLLLF 113 (224)
T ss_pred EEEEE
Confidence 97765
No 37
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.41 E-value=3e-14 Score=99.03 Aligned_cols=72 Identities=24% Similarity=0.488 Sum_probs=58.8
Q ss_pred EEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC----ceeeEEeeecccchhHH-HHH-HHhh
Q 031381 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQVGGIWR-FWM-HFLI 155 (160)
Q Consensus 82 ~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~----~v~~~kVDid~~~~l~~-~~v-~~pv 155 (160)
+.+ +.++|++.+. ++ .++|+|||+||++|+.+.|.++++++++. ++.+++||++++..+++ +.+ .+|+
T Consensus 3 ~~l-~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 76 (102)
T cd03005 3 LEL-TEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPT 76 (102)
T ss_pred eEC-CHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCE
Confidence 444 5788999983 23 59999999999999999999999998874 49999999999988864 455 4898
Q ss_pred hhcc
Q 031381 156 VFFS 159 (160)
Q Consensus 156 ~~f~ 159 (160)
++++
T Consensus 77 ~~~~ 80 (102)
T cd03005 77 LLLF 80 (102)
T ss_pred EEEE
Confidence 7654
No 38
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.40 E-value=2.6e-14 Score=104.76 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=59.2
Q ss_pred eecchhhhcccCCccCCCcceeEeeee-------cccccceeeeeeccccccCCC-ceeeEEeeecccc-------hhH-
Q 031381 84 IESGEEFNSSLGKVKDDSLPAIFYFTA-------AWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQVG-------GIW- 147 (160)
Q Consensus 84 v~s~~~f~~~l~~a~~~~k~vvV~F~A-------~WC~~Ck~l~p~~~~La~~~~-~v~~~kVDid~~~-------~l~- 147 (160)
+.+.++|++.+.. .+++++||+||| +||++|+.+.|.+++++++++ ++.|++||+|+.+ ++.
T Consensus 6 ~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~ 83 (119)
T cd02952 6 VRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRT 83 (119)
T ss_pred ccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHh
Confidence 4577888888853 357899999999 999999999999999999998 5999999998743 443
Q ss_pred HHHHH--Hhhhhcc
Q 031381 148 RFWMH--FLIVFFS 159 (160)
Q Consensus 148 ~~~v~--~pv~~f~ 159 (160)
++.+. +|+++++
T Consensus 84 ~~~I~~~iPT~~~~ 97 (119)
T cd02952 84 DPKLTTGVPTLLRW 97 (119)
T ss_pred ccCcccCCCEEEEE
Confidence 34544 7876653
No 39
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.38 E-value=5.8e-14 Score=97.77 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=58.8
Q ss_pred EEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC--c-eeeEEeeecc--cchhH-HHHH-HHh
Q 031381 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--H-VTTYKIDIDQ--VGGIW-RFWM-HFL 154 (160)
Q Consensus 82 ~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~-v~~~kVDid~--~~~l~-~~~v-~~p 154 (160)
+.+ +.++|++.+ +++++++|+|||+||++|+.+.|.++++++.++ + +.++++|+++ +..++ ++++ .+|
T Consensus 3 ~~l-~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 77 (104)
T cd02997 3 VHL-TDEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFP 77 (104)
T ss_pred EEe-chHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcccc
Confidence 344 567888887 356699999999999999999999999998875 3 8999999988 77774 4577 589
Q ss_pred hhhcc
Q 031381 155 IVFFS 159 (160)
Q Consensus 155 v~~f~ 159 (160)
+++++
T Consensus 78 t~~~~ 82 (104)
T cd02997 78 TFKYF 82 (104)
T ss_pred EEEEE
Confidence 86553
No 40
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.38 E-value=4.1e-14 Score=102.27 Aligned_cols=75 Identities=21% Similarity=0.408 Sum_probs=59.6
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC---c-eeeEEeeec--ccchhH-HHHHH-
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---H-VTTYKIDID--QVGGIW-RFWMH- 152 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~---~-v~~~kVDid--~~~~l~-~~~v~- 152 (160)
++.+ +.++|++.+. +.++++||+|||+||++|+.+.|.|++++++++ + +.++++|++ ++.+++ +++++
T Consensus 3 v~~l-~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 78 (114)
T cd02992 3 VIVL-DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG 78 (114)
T ss_pred eEEC-CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC
Confidence 3444 6789999984 456899999999999999999999999998764 3 899999975 355665 45665
Q ss_pred Hhhhhcc
Q 031381 153 FLIVFFS 159 (160)
Q Consensus 153 ~pv~~f~ 159 (160)
||+++|+
T Consensus 79 ~Pt~~lf 85 (114)
T cd02992 79 YPTLRYF 85 (114)
T ss_pred CCEEEEE
Confidence 8997765
No 41
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.37 E-value=5.8e-14 Score=99.09 Aligned_cols=68 Identities=25% Similarity=0.378 Sum_probs=55.8
Q ss_pred chhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC----ceeeEEeeecccchhHH-HHH-HHhhhhcc
Q 031381 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQVGGIWR-FWM-HFLIVFFS 159 (160)
Q Consensus 87 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~----~v~~~kVDid~~~~l~~-~~v-~~pv~~f~ 159 (160)
.++|+++. ++++++|+|||+||++|+.+.|.++++++++. ++.++++|+++.+++++ +.+ ++|+++++
T Consensus 6 ~~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~ 79 (104)
T cd03000 6 DDSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL 79 (104)
T ss_pred hhhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEE
Confidence 46777742 45699999999999999999999999999873 28999999999888864 566 48997764
No 42
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.36 E-value=4e-14 Score=99.69 Aligned_cols=68 Identities=25% Similarity=0.386 Sum_probs=53.0
Q ss_pred hhhhcccCCccCCCcceeEeeeecccccceeeeeec---cccccCCC-ceeeEEeeeccc----chhH-HHHH-HHhhhh
Q 031381 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQV----GGIW-RFWM-HFLIVF 157 (160)
Q Consensus 88 ~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~---~~La~~~~-~v~~~kVDid~~----~~l~-~~~v-~~pv~~ 157 (160)
++|++.+ ++++++||+|||+||++|+.+.+.+ +++++.+. ++.+++||++++ .+++ ++.+ .+|+++
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4566655 5789999999999999999999987 56777777 599999999873 4443 4455 489877
Q ss_pred cc
Q 031381 158 FS 159 (160)
Q Consensus 158 f~ 159 (160)
|+
T Consensus 78 ~~ 79 (104)
T cd02953 78 FY 79 (104)
T ss_pred EE
Confidence 65
No 43
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.35 E-value=9e-14 Score=96.15 Aligned_cols=70 Identities=23% Similarity=0.413 Sum_probs=59.5
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc---eeeEEeeecccchhH-HHHH-HHhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQVGGIW-RFWM-HFLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~---v~~~kVDid~~~~l~-~~~v-~~pv~~f~ 159 (160)
+.++|++.+. ++++++|+||++||++|+.+.+.++++++.+.+ +.++.+|++++..++ ++++ .+|+++++
T Consensus 2 ~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~ 76 (102)
T TIGR01126 2 TASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFF 76 (102)
T ss_pred chhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEe
Confidence 4578888873 688999999999999999999999999988864 999999999999885 4566 48887665
No 44
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.35 E-value=1.1e-13 Score=121.56 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=63.1
Q ss_pred ceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEeeecccc-hhH--HHHH-HH
Q 031381 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQVG-GIW--RFWM-HF 153 (160)
Q Consensus 80 ~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDid~~~-~l~--~~~v-~~ 153 (160)
.++.+ +.++|++.+.. ++.++++||+|||+||++|+.|.|.|++++++|.+ +.|++||+|.++ .+. ++.+ .|
T Consensus 352 ~Vv~L-~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 352 NVVSL-SRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CeEEC-CHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 44444 67789998841 36788999999999999999999999999999864 899999999764 343 4666 49
Q ss_pred hhhhcc
Q 031381 154 LIVFFS 159 (160)
Q Consensus 154 pv~~f~ 159 (160)
|+++||
T Consensus 430 PTii~F 435 (463)
T TIGR00424 430 PTILFF 435 (463)
T ss_pred ceEEEE
Confidence 998876
No 45
>PLN02309 5'-adenylylsulfate reductase
Probab=99.33 E-value=1.3e-13 Score=120.94 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=64.2
Q ss_pred ceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEeeec-ccchhHH--HHH-HH
Q 031381 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDID-QVGGIWR--FWM-HF 153 (160)
Q Consensus 80 ~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDid-~~~~l~~--~~v-~~ 153 (160)
.++.+ +.++|++++.. .+.++++||+|||+||++|+.|.|.|++++++|.+ +.|++||+| ++.++++ +.+ .|
T Consensus 346 ~Vv~L-t~~nfe~ll~~-~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 346 NVVAL-SRAGIENLLKL-ENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CcEEC-CHHHHHHHHHh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 44444 67899998742 36789999999999999999999999999999864 999999999 7677763 566 59
Q ss_pred hhhhcc
Q 031381 154 LIVFFS 159 (160)
Q Consensus 154 pv~~f~ 159 (160)
|+++||
T Consensus 424 PTil~f 429 (457)
T PLN02309 424 PTILLF 429 (457)
T ss_pred eEEEEE
Confidence 998775
No 46
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.33 E-value=1.5e-13 Score=99.27 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=52.7
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhH-HHHH-HHhhhhcc
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIW-RFWM-HFLIVFFS 159 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~-~~~v-~~pv~~f~ 159 (160)
++++.++|+|||+||++|+.+.|.+++++++++.+.++++|+|++++++ ++++ +.|+++++
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~ 82 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFL 82 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEE
Confidence 4566799999999999999999999999998877999999999999885 4566 47887764
No 47
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.33 E-value=2.8e-13 Score=94.15 Aligned_cols=71 Identities=28% Similarity=0.527 Sum_probs=59.6
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC---ceeeEEeeecc-cchhHH-HHH-HHhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQ-VGGIWR-FWM-HFLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~---~v~~~kVDid~-~~~l~~-~~v-~~pv~~f~ 159 (160)
+.++|++.+. +.+++++|+||++||++|+.+.|.+++++++++ ++.++++|+++ ++++++ +.+ .+|+++|+
T Consensus 6 ~~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 6 TDSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82 (105)
T ss_pred chhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence 5678888763 466799999999999999999999999999875 39999999999 888865 455 48887664
No 48
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.33 E-value=1.7e-13 Score=94.30 Aligned_cols=71 Identities=25% Similarity=0.579 Sum_probs=59.2
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHH-HHhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWM-HFLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v-~~pv~~f~ 159 (160)
+.++|++.+. +.+++++|+||++||++|+.+.+.++++++++++ +.++++|+++++.+++ +++ .+|+++|+
T Consensus 2 ~~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~ 75 (101)
T TIGR01068 2 TDANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLF 75 (101)
T ss_pred CHHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence 3567888773 4567999999999999999999999999988875 9999999999988754 555 48886653
No 49
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.8e-13 Score=119.13 Aligned_cols=77 Identities=16% Similarity=0.346 Sum_probs=64.8
Q ss_pred cceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC----ceeeEEeeecccchhH-HHHH-H
Q 031381 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQVGGIW-RFWM-H 152 (160)
Q Consensus 79 ~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~----~v~~~kVDid~~~~l~-~~~v-~ 152 (160)
...+.+.+.++|++.+ ..+..++|.|||||||||+.++|.|++.++.+. .+.+++||++++.+++ +|.+ .
T Consensus 24 ~~~Vl~Lt~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~g 99 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRG 99 (493)
T ss_pred ccceEEEecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCC
Confidence 4445555789999998 577899999999999999999999998887763 4999999999998885 5677 4
Q ss_pred Hhhhhcc
Q 031381 153 FLIVFFS 159 (160)
Q Consensus 153 ~pv~~f~ 159 (160)
||++.+|
T Consensus 100 yPTlkiF 106 (493)
T KOG0190|consen 100 YPTLKIF 106 (493)
T ss_pred CCeEEEE
Confidence 9998876
No 50
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.32 E-value=7e-14 Score=101.76 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=53.4
Q ss_pred hhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC-ceeeEEeeecccch-h-HHHHH---HHhhhhcc
Q 031381 89 EFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQVGG-I-WRFWM---HFLIVFFS 159 (160)
Q Consensus 89 ~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~-~v~~~kVDid~~~~-l-~~~~v---~~pv~~f~ 159 (160)
+|++.+..+++++|++||+|||+||++|+.|.|.+.+..+.+. +..|+.||+|.+++ . .++.+ .+|+++|+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEE
Confidence 5777777778899999999999999999999999988766542 25566677765542 2 44444 27887765
No 51
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.32 E-value=1.7e-13 Score=107.95 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=63.6
Q ss_pred CCCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHHHHH-Hh
Q 031381 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRFWMH-FL 154 (160)
Q Consensus 76 ~~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~~v~-~p 154 (160)
...+.+..+ +.++|.+.+.++ .++++|||+||++||++|+.|.|.|++|+++|+++.|++||+++. +.++.++ .|
T Consensus 79 ~~~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~--~~~~~i~~lP 154 (192)
T cd02988 79 SKFGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC--IPNYPDKNLP 154 (192)
T ss_pred CCCCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh--HhhCCCCCCC
Confidence 345677777 567888766431 235699999999999999999999999999999999999999864 4566664 78
Q ss_pred hhhcc
Q 031381 155 IVFFS 159 (160)
Q Consensus 155 v~~f~ 159 (160)
+++++
T Consensus 155 Tlliy 159 (192)
T cd02988 155 TILVY 159 (192)
T ss_pred EEEEE
Confidence 87665
No 52
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.27 E-value=3.8e-13 Score=91.70 Aligned_cols=70 Identities=21% Similarity=0.429 Sum_probs=58.5
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCC---CceeeEEeeecccchhHH-HHH-HHhhhhcc
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH---PHVTTYKIDIDQVGGIWR-FWM-HFLIVFFS 159 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~---~~v~~~kVDid~~~~l~~-~~v-~~pv~~f~ 159 (160)
+.++|++.+. ++++++|+||++||++|+.+.+.++++++.+ .++.++.+|++++..+++ +++ .+|+++++
T Consensus 4 ~~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 4 TDDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLF 78 (101)
T ss_pred cHHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEE
Confidence 4678888873 4559999999999999999999999999988 349999999999888855 466 47987664
No 53
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.25 E-value=2.9e-13 Score=98.31 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=48.3
Q ss_pred ccCCC-cceeEeeeecccccceeeeeecc---ccccCCC-ceeeEEeeeccc-------------chhH-HHHHH-Hhhh
Q 031381 97 VKDDS-LPAIFYFTAAWCGPCKFIWPVIG---ELSAKHP-HVTTYKIDIDQV-------------GGIW-RFWMH-FLIV 156 (160)
Q Consensus 97 a~~~~-k~vvV~F~A~WC~~Ck~l~p~~~---~La~~~~-~v~~~kVDid~~-------------~~l~-~~~v~-~pv~ 156 (160)
+++++ |+++|+|||+||++|+.+.+.+. ++.+.+. ++.+++||+|++ .+++ ++.++ +|++
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 34678 99999999999999999999885 4555554 488999999865 3454 45554 7887
Q ss_pred hcc
Q 031381 157 FFS 159 (160)
Q Consensus 157 ~f~ 159 (160)
+|+
T Consensus 89 ~~~ 91 (125)
T cd02951 89 IFL 91 (125)
T ss_pred EEE
Confidence 765
No 54
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.25 E-value=7.1e-13 Score=92.47 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=53.0
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHH-HHhhhhcc
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWM-HFLIVFFS 159 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v-~~pv~~f~ 159 (160)
+.+++++++||++||+.|+.+.|.++++++++++ +.++++|+|+++++++ +++ ++|+++++
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFF 74 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEE
Confidence 5788999999999999999999999999999875 9999999999988854 455 58887654
No 55
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.24 E-value=1.7e-12 Score=95.17 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=47.3
Q ss_pred ecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 85 ~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
.+.++|.+.+ ++++.++|+||++|||+|+.+.|.+++++++ .++.+++||+|.++
T Consensus 11 it~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~ 65 (122)
T TIGR01295 11 TTVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNG 65 (122)
T ss_pred cCHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCcc
Confidence 3677888887 4678899999999999999999999999998 45889999998654
No 56
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.22 E-value=1.2e-12 Score=117.78 Aligned_cols=82 Identities=16% Similarity=0.302 Sum_probs=65.3
Q ss_pred CcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeec---cccccCCCceeeEEeeecccc----hh-HHH
Q 031381 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPHVTTYKIDIDQVG----GI-WRF 149 (160)
Q Consensus 78 ~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~---~~La~~~~~v~~~kVDid~~~----~l-~~~ 149 (160)
......+.+.+++++.++++++++|+++|+|||+||++||.+++.+ +++.++++++.++++|+|+++ ++ .++
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence 3456778889999999987778899999999999999999998864 667788888999999998653 33 344
Q ss_pred HH-HHhhhhcc
Q 031381 150 WM-HFLIVFFS 159 (160)
Q Consensus 150 ~v-~~pv~~f~ 159 (160)
.+ .+|+++|+
T Consensus 531 ~v~g~Pt~~~~ 541 (571)
T PRK00293 531 NVLGLPTILFF 541 (571)
T ss_pred CCCCCCEEEEE
Confidence 55 37876653
No 57
>PTZ00102 disulphide isomerase; Provisional
Probab=99.22 E-value=2.3e-12 Score=112.02 Aligned_cols=77 Identities=23% Similarity=0.405 Sum_probs=63.1
Q ss_pred cceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc---eeeEEeeecccchhHH-HHH-HH
Q 031381 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQVGGIWR-FWM-HF 153 (160)
Q Consensus 79 ~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~---v~~~kVDid~~~~l~~-~~v-~~ 153 (160)
+.+..+ +.++|++.+. +.+++++|+|||+||++|+.+.|.|+++++.+.+ +.++++|++.++..++ +.+ .+
T Consensus 357 ~~v~~l-~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~ 432 (477)
T PTZ00102 357 GPVKVV-VGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAF 432 (477)
T ss_pred CCeEEe-cccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCccc
Confidence 344444 6899999863 6789999999999999999999999999988753 8999999999887754 555 58
Q ss_pred hhhhcc
Q 031381 154 LIVFFS 159 (160)
Q Consensus 154 pv~~f~ 159 (160)
|+++|+
T Consensus 433 Pt~~~~ 438 (477)
T PTZ00102 433 PTILFV 438 (477)
T ss_pred CeEEEE
Confidence 987664
No 58
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.18 E-value=3e-12 Score=85.43 Aligned_cols=68 Identities=34% Similarity=0.660 Sum_probs=56.1
Q ss_pred hhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhH-HHHH-HHhhhhcc
Q 031381 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIW-RFWM-HFLIVFFS 159 (160)
Q Consensus 88 ~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~-~~~v-~~pv~~f~ 159 (160)
++|++.+ +++++++|+||++||++|+.+.+.+++++++.+++.++.+|++++.++. ++.+ ++|+++++
T Consensus 1 ~~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~ 70 (93)
T cd02947 1 EEFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFF 70 (93)
T ss_pred CchHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEE
Confidence 3566666 3448999999999999999999999999998777999999999988774 4566 58887654
No 59
>PTZ00062 glutaredoxin; Provisional
Probab=99.16 E-value=3.3e-12 Score=101.55 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=54.1
Q ss_pred ecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHHHH-HHhhhhcc
Q 031381 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRFWM-HFLIVFFS 159 (160)
Q Consensus 85 ~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~~v-~~pv~~f~ 159 (160)
.+.++|++.+. .+.+.+|++|||+||++|+.|.|++++|+++|+++.|++||.| +.+ .+|+++|+
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------~~V~~vPtfv~~ 69 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------DANNEYGVFEFY 69 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------cCcccceEEEEE
Confidence 46788888874 2336799999999999999999999999999999999999988 555 36776553
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.15 E-value=6.9e-12 Score=107.80 Aligned_cols=76 Identities=28% Similarity=0.433 Sum_probs=61.9
Q ss_pred cceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc----eeeEEeeecccchhHHHHH-HH
Q 031381 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH----VTTYKIDIDQVGGIWRFWM-HF 153 (160)
Q Consensus 79 ~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~----v~~~kVDid~~~~l~~~~v-~~ 153 (160)
+.+.. .+.++|++.+. +.++.+||+|||+||++|+.+.|.++++++.+.+ +.++++|++.++... +.+ .+
T Consensus 346 ~~v~~-l~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~-~~i~~~ 420 (462)
T TIGR01130 346 GPVKV-LVGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP-FEVEGF 420 (462)
T ss_pred CccEE-eeCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC-CCcccc
Confidence 34444 46899999874 5789999999999999999999999999998864 899999999876445 655 48
Q ss_pred hhhhcc
Q 031381 154 LIVFFS 159 (160)
Q Consensus 154 pv~~f~ 159 (160)
|+++|+
T Consensus 421 Pt~~~~ 426 (462)
T TIGR01130 421 PTIKFV 426 (462)
T ss_pred CEEEEE
Confidence 887664
No 61
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.13 E-value=8.3e-12 Score=104.11 Aligned_cols=61 Identities=23% Similarity=0.400 Sum_probs=54.0
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCCc----eeeEEeeecccchhH-HHHHH-Hhhhhcc
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH----VTTYKIDIDQVGGIW-RFWMH-FLIVFFS 159 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~----v~~~kVDid~~~~l~-~~~v~-~pv~~f~ 159 (160)
+++..++|+||||||++||++.|+|+++.-++++ +.+.|+|++..+.++ +++++ ||++.||
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~ 107 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFF 107 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEe
Confidence 4667999999999999999999999999888764 899999999999996 56775 9998876
No 62
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.12 E-value=8.2e-12 Score=107.33 Aligned_cols=71 Identities=15% Similarity=0.319 Sum_probs=59.6
Q ss_pred ecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC----ceeeEEeeecccchhHH-HHH-HHhhhhc
Q 031381 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQVGGIWR-FWM-HFLIVFF 158 (160)
Q Consensus 85 ~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~----~v~~~kVDid~~~~l~~-~~v-~~pv~~f 158 (160)
.+.++|++++ +++++++|+|||+||++|+.+.|.++++++.+. ++.+++||++++.++++ +++ .||++++
T Consensus 6 l~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 6 LTKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CCHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 3678999988 457799999999999999999999998887653 39999999999999865 556 5998776
Q ss_pred c
Q 031381 159 S 159 (160)
Q Consensus 159 ~ 159 (160)
+
T Consensus 82 ~ 82 (462)
T TIGR01130 82 F 82 (462)
T ss_pred E
Confidence 5
No 63
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.12 E-value=7.8e-12 Score=92.18 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=49.8
Q ss_pred CCccCCCcceeEeeeecccccceeeee-ec--cccccCC-CceeeEEeeecccchhHHHHH----------HHhhhhcc
Q 031381 95 GKVKDDSLPAIFYFTAAWCGPCKFIWP-VI--GELSAKH-PHVTTYKIDIDQVGGIWRFWM----------HFLIVFFS 159 (160)
Q Consensus 95 ~~a~~~~k~vvV~F~A~WC~~Ck~l~p-~~--~~La~~~-~~v~~~kVDid~~~~l~~~~v----------~~pv~~f~ 159 (160)
..+++++|+++|+|||+||++|+.|.+ +| .++.+.. .+++++++|+++.+++++... .+|+++|+
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl 87 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFL 87 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 345688999999999999999999987 34 2466553 568999999999888865322 37777664
No 64
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.11 E-value=1.3e-11 Score=90.19 Aligned_cols=71 Identities=6% Similarity=0.105 Sum_probs=56.8
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeee--cccc---cceeeeeeccccccCCCceeeEEeeec-----ccchhH-HH
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTA--AWCG---PCKFIWPVIGELSAKHPHVTTYKIDID-----QVGGIW-RF 149 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A--~WC~---~Ck~l~p~~~~La~~~~~v~~~kVDid-----~~~~l~-~~ 149 (160)
++.+ +.++|++.+ ++++.+||.||| +||+ +|+.++|.+.+-+.. |.+++||++ ++.+++ +|
T Consensus 3 ~v~L-~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 3 CVDL-DTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred eeEC-ChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHh
Confidence 3444 688999998 467899999999 9999 888888887766654 899999994 466774 56
Q ss_pred HH---HHhhhhcc
Q 031381 150 WM---HFLIVFFS 159 (160)
Q Consensus 150 ~v---~~pv~~f~ 159 (160)
+| .||+++||
T Consensus 75 ~I~~~gyPTl~lF 87 (116)
T cd03007 75 KLDKESYPVIYLF 87 (116)
T ss_pred CCCcCCCCEEEEE
Confidence 88 49998876
No 65
>PTZ00102 disulphide isomerase; Provisional
Probab=99.11 E-value=9.4e-12 Score=108.18 Aligned_cols=75 Identities=17% Similarity=0.367 Sum_probs=61.3
Q ss_pred ceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCC----CceeeEEeeecccchhH-HHHH-HH
Q 031381 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH----PHVTTYKIDIDQVGGIW-RFWM-HF 153 (160)
Q Consensus 80 ~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~----~~v~~~kVDid~~~~l~-~~~v-~~ 153 (160)
.++.+ +.++|++.+ ++++.++|+|||+||++|+.+.|.++++++.+ +++.+++||++++.+++ ++++ .|
T Consensus 33 ~v~~l-~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~ 107 (477)
T PTZ00102 33 HVTVL-TDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGY 107 (477)
T ss_pred CcEEc-chhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcc
Confidence 34444 678999987 45679999999999999999999999987654 34999999999999996 4566 59
Q ss_pred hhhhcc
Q 031381 154 LIVFFS 159 (160)
Q Consensus 154 pv~~f~ 159 (160)
|+++++
T Consensus 108 Pt~~~~ 113 (477)
T PTZ00102 108 PTIKFF 113 (477)
T ss_pred cEEEEE
Confidence 987664
No 66
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.10 E-value=1.2e-12 Score=88.97 Aligned_cols=72 Identities=24% Similarity=0.476 Sum_probs=54.7
Q ss_pred hhhhcccCCccCCCcceeEeeeecccccceeeeeec---cccccCC-CceeeEEeeecccchhHHHHH-HHhhhhcc
Q 031381 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKH-PHVTTYKIDIDQVGGIWRFWM-HFLIVFFS 159 (160)
Q Consensus 88 ~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~---~~La~~~-~~v~~~kVDid~~~~l~~~~v-~~pv~~f~ 159 (160)
.+|++.+.++++++|+++|+|+|+||+.|+.|...+ +++.+.+ .++++++||+++.....+... .+|+++|+
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~~P~~~~l 80 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQGYPTFFFL 80 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCSSSEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCccCCEEEEe
Confidence 467888888889999999999999999999999877 3444422 458999999987665444322 36777664
No 67
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.06 E-value=2.4e-11 Score=79.01 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=47.3
Q ss_pred eeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhH-HHHH-HHhhhhc
Q 031381 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIW-RFWM-HFLIVFF 158 (160)
Q Consensus 104 vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~-~~~v-~~pv~~f 158 (160)
-|+.||++||++|+.+.+.++++++.++++.+.++|++++++++ ++++ ..|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 36789999999999999999999998888999999999998875 4566 5788754
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.02 E-value=3.7e-11 Score=83.74 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=51.3
Q ss_pred CcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHHH-HH---HHhhhhc
Q 031381 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWRF-WM---HFLIVFF 158 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~~-~v---~~pv~~f 158 (160)
++++++.|+++||++|+.+.|.+++++++|.+ +.|+.||+|++++++++ ++ .+|++++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEE
Confidence 67999999999999999999999999999977 99999999998888654 55 4787654
No 69
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.01 E-value=4.5e-11 Score=80.01 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=45.9
Q ss_pred eeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHHH-Hhhhh
Q 031381 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWMH-FLIVF 157 (160)
Q Consensus 104 vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v~-~pv~~ 157 (160)
.|..||++||++|+.+.|.++++++++++ +.+++||+++++++++ +++. +|+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~ 58 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIV 58 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEE
Confidence 36689999999999999999999999865 9999999999888854 5554 78865
No 70
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.97 E-value=1.4e-10 Score=87.72 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=38.9
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCC---------CceeeEEeeecccch
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKH---------PHVTTYKIDIDQVGG 145 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~---------~~v~~~kVDid~~~~ 145 (160)
++|+++|+|||+||++|+.+.|.+.++.+++ .++.++.|+.|++.+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~ 78 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ 78 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH
Confidence 5789999999999999999999998876533 248999999987654
No 71
>PHA02125 thioredoxin-like protein
Probab=98.95 E-value=7.1e-11 Score=79.18 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=39.4
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHH-HHH-HHhhhh
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWR-FWM-HFLIVF 157 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~-~~v-~~pv~~ 157 (160)
+++|||+||++|+.+.|.++++. +.+++||.|++.++++ +.+ .+|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 78999999999999999998663 4688999999888854 565 478865
No 72
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.95 E-value=1.5e-10 Score=79.76 Aligned_cols=48 Identities=33% Similarity=0.682 Sum_probs=40.5
Q ss_pred CcceeEeeeecccccceeeeeeccccccCCC---ceeeEEeeecccchhHH
Q 031381 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQVGGIWR 148 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~---~v~~~kVDid~~~~l~~ 148 (160)
||+++|+|||+||++|+...|.+.++.++|+ ++.++.|.+|+..+-.+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~ 51 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWK 51 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHH
Confidence 6899999999999999999999999999998 49999999987654433
No 73
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.91 E-value=6e-11 Score=88.22 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=51.8
Q ss_pred hhhhcccCCccCCCcceeEeeeecccccceeeeeec---cccccCC-CceeeEEeeecccc-hhHHHHHHHhhhhcc
Q 031381 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKH-PHVTTYKIDIDQVG-GIWRFWMHFLIVFFS 159 (160)
Q Consensus 88 ~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~---~~La~~~-~~v~~~kVDid~~~-~l~~~~v~~pv~~f~ 159 (160)
.+|++.+..+++++|+++|+||++||++|+.|...+ .++++.. .++..+++|.|..+ .....+..+|+++|+
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g~~vPtivFl 86 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDGQYVPRIMFV 86 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccCcccCeEEEE
Confidence 478888888899999999999999999999999865 3344433 24666677776322 222344557887774
No 74
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.90 E-value=3.2e-10 Score=86.41 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=35.9
Q ss_pred CcceeEeeeecccccceeeeeeccccccCCCceeeEEeeeccc
Q 031381 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQV 143 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~ 143 (160)
++..||+|||+||++|+.+.|.+++++++| ++.++.|++|+.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCC
Confidence 446699999999999999999999999998 567777777753
No 75
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.89 E-value=1.5e-10 Score=77.98 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=40.1
Q ss_pred eEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHHHHH-HHhhhh
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWRFWM-HFLIVF 157 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~~~v-~~pv~~ 157 (160)
.|+|||+||++|+.+.|.+++++++++. +.+++|| +.+++.++++ ..|+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~~a~~~~v~~vPti~ 54 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--DMNEILEAGVTATPGVA 54 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHcCCCcCCEEE
Confidence 4789999999999999999999999976 8887777 3334555655 467654
No 76
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.85 E-value=9.2e-10 Score=77.96 Aligned_cols=39 Identities=21% Similarity=0.486 Sum_probs=33.7
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEe
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKI 138 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kV 138 (160)
+++++||+||++||++|+.+.|.++++.+++.+ +.++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence 378999999999999999999999999888754 666655
No 77
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.84 E-value=6.4e-10 Score=88.38 Aligned_cols=57 Identities=9% Similarity=0.173 Sum_probs=48.5
Q ss_pred ceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhH-HHHH-HHhhhhcc
Q 031381 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIW-RFWM-HFLIVFFS 159 (160)
Q Consensus 103 ~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~-~~~v-~~pv~~f~ 159 (160)
..|+.||++||++|+.+.+.+++++.+++++.+.++|++++++++ ++++ .+|+++++
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEe
Confidence 345559999999999999999999999888999999999999885 5566 58987764
No 78
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.83 E-value=1.1e-09 Score=85.10 Aligned_cols=44 Identities=18% Similarity=0.425 Sum_probs=38.3
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccch
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGG 145 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~ 145 (160)
++|++||+|||+||++|+.+.|.++++.++ ++.++.|+.+++++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~ 110 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQ 110 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHH
Confidence 578999999999999999999999999764 68899999876544
No 79
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=5.9e-10 Score=95.59 Aligned_cols=61 Identities=25% Similarity=0.440 Sum_probs=54.8
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH-HHHH-Hhhhhcc
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR-FWMH-FLIVFFS 159 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~-~~v~-~pv~~f~ 159 (160)
..++.++|+|||+||++|+.+.|.|+++++.+.+ +.+..||++.+.++++ +++. ||++.+|
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f 108 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVF 108 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEE
Confidence 5778999999999999999999999999999988 9999999999999964 5774 8998765
No 80
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.82 E-value=1.1e-09 Score=80.22 Aligned_cols=45 Identities=24% Similarity=0.528 Sum_probs=38.0
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCC----ceeeEEeeecccc
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQVG 144 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~----~v~~~kVDid~~~ 144 (160)
+||++||+|||+||++|+.+.|.++++.+++. ++.++.|++|..+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~ 64 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSE 64 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCH
Confidence 57899999999999999999999988877653 4788888887654
No 81
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.81 E-value=7e-10 Score=88.13 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=45.6
Q ss_pred ceeEeeee---cccccceeeeeeccccccCCCc--eeeEEeeecccchhH-HHHH-HHhhhhcc
Q 031381 103 PAIFYFTA---AWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQVGGIW-RFWM-HFLIVFFS 159 (160)
Q Consensus 103 ~vvV~F~A---~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDid~~~~l~-~~~v-~~pv~~f~ 159 (160)
..++.|++ +||++|+.+.|.+++++++|++ +.++++|.|++++++ ++++ .+|++++|
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f 84 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIIL 84 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEE
Confidence 44555777 9999999999999999999976 457777777888885 4566 48988764
No 82
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.79 E-value=8.9e-10 Score=90.97 Aligned_cols=59 Identities=15% Similarity=0.360 Sum_probs=46.0
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeeccc-----------chh-HHHHHH-Hhhhhcc
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQV-----------GGI-WRFWMH-FLIVFFS 159 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~-----------~~l-~~~~v~-~pv~~f~ 159 (160)
.++++||+|||+||++|+.+.|.+++++++|+ +.++.|++|.. ..+ .+++++ +|+++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv 236 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLA 236 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEE
Confidence 46799999999999999999999999999995 66777777653 234 344664 7887664
No 83
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.76 E-value=2.6e-09 Score=77.31 Aligned_cols=44 Identities=27% Similarity=0.580 Sum_probs=38.1
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
+++++||+||++||++|+.+.|.++++.+++ ++.++.|+.++..
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~ 67 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNP 67 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCH
Confidence 4789999999999999999999999999887 4888888875443
No 84
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.76 E-value=2.3e-09 Score=78.15 Aligned_cols=45 Identities=27% Similarity=0.525 Sum_probs=37.0
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCC----ceeeEEeeecccc
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQVG 144 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~----~v~~~kVDid~~~ 144 (160)
++|++||+||++||++|+.+.|.+.++.+++. ++.++.|++|...
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~ 65 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE 65 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH
Confidence 46799999999999999999999988876652 5777877777554
No 85
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.74 E-value=1.2e-09 Score=91.06 Aligned_cols=69 Identities=26% Similarity=0.439 Sum_probs=57.0
Q ss_pred chhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccC----CCc--eeeEEeeecccchhH-HHHH-HHhhhhc
Q 031381 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK----HPH--VTTYKIDIDQVGGIW-RFWM-HFLIVFF 158 (160)
Q Consensus 87 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~----~~~--v~~~kVDid~~~~l~-~~~v-~~pv~~f 158 (160)
.++++.++ +...+++|.|||+||+..+.+.|+|++.++. ||+ +++.+||+|++.+++ +|.+ +||++-.
T Consensus 3 ~~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKv 78 (375)
T KOG0912|consen 3 SENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKV 78 (375)
T ss_pred cccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeee
Confidence 46677777 4577999999999999999999999887654 563 999999999999996 5555 6999765
Q ss_pred c
Q 031381 159 S 159 (160)
Q Consensus 159 ~ 159 (160)
|
T Consensus 79 f 79 (375)
T KOG0912|consen 79 F 79 (375)
T ss_pred e
Confidence 4
No 86
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.73 E-value=1.6e-09 Score=85.53 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=37.8
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeec
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDID 141 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid 141 (160)
+||++||+|||+||++|+...|.+.++.++|. |+.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 46899999999999999999999999999986 4899999864
No 87
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.71 E-value=2.6e-09 Score=95.21 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeee
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDI 140 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDi 140 (160)
+++|++||+|||+||++|+.+.|.++++.++++ ++.++.|.+
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~ 97 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVAS 97 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEec
Confidence 368899999999999999999999999999886 577777654
No 88
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.70 E-value=2.6e-09 Score=77.60 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=36.9
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEeee
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDI 140 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDi 140 (160)
++|++||+||+.||++|+...|.++++.++|++ +.++.|+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 468999999999999999999999999999974 88888865
No 89
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.5e-09 Score=96.55 Aligned_cols=77 Identities=17% Similarity=0.379 Sum_probs=61.7
Q ss_pred cceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc----eeeEEeeec--ccchhHH-HHH
Q 031381 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH----VTTYKIDID--QVGGIWR-FWM 151 (160)
Q Consensus 79 ~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~----v~~~kVDid--~~~~l~~-~~v 151 (160)
.+++.+ +.+.|+..+. ...+-.+|+||++|||+|+..+|.|+++++...+ +.++.||+- +|..+++ +.|
T Consensus 39 D~ii~L-d~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V 114 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV 114 (606)
T ss_pred CCeEEe-ehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC
Confidence 555555 6899999985 4456899999999999999999999999998643 889999984 5556665 566
Q ss_pred -HHhhhhcc
Q 031381 152 -HFLIVFFS 159 (160)
Q Consensus 152 -~~pv~~f~ 159 (160)
.||++.||
T Consensus 115 ~~~Ptlryf 123 (606)
T KOG1731|consen 115 SGYPTLRYF 123 (606)
T ss_pred CCCceeeec
Confidence 58998765
No 90
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.64 E-value=1.1e-08 Score=78.67 Aligned_cols=42 Identities=24% Similarity=0.586 Sum_probs=36.6
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeeccc
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQV 143 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~ 143 (160)
++|+++|+||++||++|+.+.|.++++.++ ++.++.|+.++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~ 103 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQ 103 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCC
Confidence 578999999999999999999999998765 588888887643
No 91
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.64 E-value=2.2e-09 Score=75.87 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=36.7
Q ss_pred cCCCcceeEeeeecccccceeeeeeccc---cccCCC-ceeeEEeeecccc
Q 031381 98 KDDSLPAIFYFTAAWCGPCKFIWPVIGE---LSAKHP-HVTTYKIDIDQVG 144 (160)
Q Consensus 98 ~~~~k~vvV~F~A~WC~~Ck~l~p~~~~---La~~~~-~v~~~kVDid~~~ 144 (160)
+.+++++|++||++||++|+.+.+.+.+ +.+.+. ++.++.+|+++..
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSR 52 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHH
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcc
Confidence 5688999999999999999999998874 555554 4889999987654
No 92
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.63 E-value=4.5e-09 Score=82.19 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=33.5
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeeccc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQV 143 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~ 143 (160)
||+||++||++|++..|.+.+++++| ++.++.|++|+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~ 110 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQ 110 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCC
Confidence 77899999999999999999999999 577777877744
No 93
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.63 E-value=5.7e-09 Score=84.76 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=38.1
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEeeec
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDID 141 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDid 141 (160)
+||++||+|||+||++|+...|.+.+|.++|.+ +.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 578999999999999999999999999999864 899999874
No 94
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.62 E-value=6.3e-09 Score=78.17 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=37.0
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeee
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDI 140 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDi 140 (160)
+||++||+|||+||++|+...|.+.++.++|+ |+.++.|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 46789999999999999999999999999986 489999885
No 95
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1e-08 Score=88.00 Aligned_cols=75 Identities=20% Similarity=0.361 Sum_probs=60.3
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC---ceeeEEeeecccchhHH-HHHH-Hhh
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQVGGIWR-FWMH-FLI 155 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~---~v~~~kVDid~~~~l~~-~~v~-~pv 155 (160)
+..+ +.++|+..+. +.+..++|.||||||++|+.++|.|+++++.+. ++.+.++|++.+..+++ +.++ ||+
T Consensus 146 v~~l-~~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred eEEc-cccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 4444 5677777663 567789999999999999999999999998773 39999999998888765 4664 899
Q ss_pred hhcc
Q 031381 156 VFFS 159 (160)
Q Consensus 156 ~~f~ 159 (160)
+.||
T Consensus 222 ~~~f 225 (383)
T KOG0191|consen 222 LKLF 225 (383)
T ss_pred EEEe
Confidence 8765
No 96
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.61 E-value=1.8e-08 Score=69.43 Aligned_cols=44 Identities=23% Similarity=0.508 Sum_probs=40.3
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCC--CceeeEEeeeccc
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKH--PHVTTYKIDIDQV 143 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~--~~v~~~kVDid~~ 143 (160)
.+++++|+||++||++|+...+.+.++.+++ +++.++.|++|.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 3689999999999999999999999999998 5699999999885
No 97
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.59 E-value=3.6e-09 Score=78.23 Aligned_cols=50 Identities=28% Similarity=0.550 Sum_probs=42.8
Q ss_pred CCcceeEeeeec-ccccceeeeeeccccccCCC--ceeeEEeeecccchhHHH
Q 031381 100 DSLPAIFYFTAA-WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 100 ~~k~vvV~F~A~-WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~~~ 149 (160)
++|++||+||+. ||++|+...|.+.++.++|. ++.++.|..+.++.+.++
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~ 79 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREF 79 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHH
Confidence 678999999999 99999999999999988864 489999988877765444
No 98
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.55 E-value=1.3e-08 Score=91.05 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=55.7
Q ss_pred EEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeecc---ccccCCCceeeEEeeecccch-hHH----H-HHH
Q 031381 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIG---ELSAKHPHVTTYKIDIDQVGG-IWR----F-WMH 152 (160)
Q Consensus 82 ~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~---~La~~~~~v~~~kVDid~~~~-l~~----~-~v~ 152 (160)
..+.+.+++++.+++ .++|+|++||||+||--||++++..- +.+.+.+|++..++|++++.. +.+ + .+.
T Consensus 457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 566667799999865 34479999999999999999999663 345566889999999986543 332 2 224
Q ss_pred Hhhhhcc
Q 031381 153 FLIVFFS 159 (160)
Q Consensus 153 ~pv~~f~ 159 (160)
.|+++|+
T Consensus 535 ~P~~~ff 541 (569)
T COG4232 535 VPTYLFF 541 (569)
T ss_pred CCEEEEE
Confidence 5665553
No 99
>PLN02412 probable glutathione peroxidase
Probab=98.55 E-value=1.2e-08 Score=78.27 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=37.7
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEeeec
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDID 141 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDid 141 (160)
.+|++||+|||+||++|+...|.+.++.++|.+ +.++.|+.+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 357999999999999999999999999999974 899999874
No 100
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.55 E-value=1.6e-08 Score=70.30 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=49.1
Q ss_pred CcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchh-HHHHH-HHhhhh
Q 031381 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI-WRFWM-HFLIVF 157 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l-~~~~v-~~pv~~ 157 (160)
+..-+..|+++||++|+.+.+.++++++.++++.+..+|+++.+++ .++++ ..|+++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~v 70 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIF 70 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEE
Confidence 3457888999999999999999999999999999999999999877 45666 478764
No 101
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.54 E-value=2.5e-08 Score=74.96 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=36.6
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeec
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDID 141 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid 141 (160)
.+|++||+|||+||+ |+...|.+.++.++|. ++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 478999999999999 9999999999999985 4889998764
No 102
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.51 E-value=2.1e-08 Score=96.07 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEee
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKID 139 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVD 139 (160)
++|++||+|||+||++|+.+.|.++++.++|++ +.++.|.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~ 460 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVH 460 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEe
Confidence 578999999999999999999999999999975 7777774
No 103
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.49 E-value=5.2e-08 Score=65.99 Aligned_cols=57 Identities=23% Similarity=0.476 Sum_probs=46.1
Q ss_pred CcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeec-ccchhH-HHH---HHHhhhh
Q 031381 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDID-QVGGIW-RFW---MHFLIVF 157 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid-~~~~l~-~~~---v~~pv~~ 157 (160)
+++++++||++||++|+.+.|.+.++++++.+ +.++.+|+. .+++.. .+. ..+|.+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~ 94 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLL 94 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEE
Confidence 77999999999999999999999999999985 999999996 566653 343 2455543
No 104
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.47 E-value=1.2e-07 Score=74.45 Aligned_cols=66 Identities=9% Similarity=-0.009 Sum_probs=46.4
Q ss_pred CCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceee------EEeeecccch
Q 031381 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTT------YKIDIDQVGG 145 (160)
Q Consensus 77 ~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~------~kVDid~~~~ 145 (160)
..++++.-.+.=+++.+- ...-.||+.||+|||.||++|+...|.+++|+++ ++.+ +-||.|+...
T Consensus 36 ~~ge~~~~~~~~~y~~~~-~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~ 107 (184)
T TIGR01626 36 EYGEIVLSGKDTVYQPWG-SAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIV 107 (184)
T ss_pred CCceEEEcCCcccceecc-HHHcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchh
Confidence 344444443333444442 2344699999999999999999999999999654 3555 8888886543
No 105
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.46 E-value=4.9e-08 Score=73.84 Aligned_cols=46 Identities=24% Similarity=0.499 Sum_probs=40.1
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEeeecccch
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQVGG 145 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDid~~~~ 145 (160)
++++++|+||++||++|+...+.+.++.+++++ +.++.|++|+.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~ 107 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETEL 107 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHH
Confidence 467899999999999999999999999999864 8899999876543
No 106
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.45 E-value=5.3e-08 Score=76.05 Aligned_cols=42 Identities=21% Similarity=0.463 Sum_probs=33.6
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecc
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~ 142 (160)
++|++||+|||+||++|+.+.|.+.++.+++ ++.++.|..|+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~ 114 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGT 114 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCC
Confidence 5789999999999999999999999988775 44445555343
No 107
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.36 E-value=1.4e-07 Score=69.46 Aligned_cols=47 Identities=11% Similarity=-0.025 Sum_probs=41.1
Q ss_pred CCcceeEeeeecc-cccceeeeeeccccccCCCceeeEEeeecccchh
Q 031381 100 DSLPAIFYFTAAW-CGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI 146 (160)
Q Consensus 100 ~~k~vvV~F~A~W-C~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l 146 (160)
.+|++||+||+.| |++|+...|.+.++.++++++.++.|++|.....
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~ 72 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQ 72 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHH
Confidence 4679999999999 6999999999999999998899999998865433
No 108
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.32 E-value=8.2e-08 Score=74.53 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=34.8
Q ss_pred CCcce-eEeeeecccccceeeeeeccccccCCC--ceeeEEeeec
Q 031381 100 DSLPA-IFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDID 141 (160)
Q Consensus 100 ~~k~v-vV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid 141 (160)
.||++ |+.+||+||++|+...|.+.++.++|. |+.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 35654 456699999999999999999999986 4899999864
No 109
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.31 E-value=7.9e-08 Score=68.86 Aligned_cols=72 Identities=8% Similarity=0.094 Sum_probs=51.7
Q ss_pred hhhhcccCCccCCCcceeEeeeecccccceeeee-ec--cccccCCC-ceeeEEeeecccc--hhHH-HHH-HHhhhhcc
Q 031381 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWP-VI--GELSAKHP-HVTTYKIDIDQVG--GIWR-FWM-HFLIVFFS 159 (160)
Q Consensus 88 ~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p-~~--~~La~~~~-~v~~~kVDid~~~--~l~~-~~v-~~pv~~f~ 159 (160)
.+|++.+..+++++|+++|+|+++||++|+.+.. +| +++.+... ++.++++|+++.+ .+++ +.+ .+|+++|+
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 4677888888899999999999999999999976 34 44555543 4889999997532 2222 233 36776653
No 110
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.6e-07 Score=74.10 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=60.7
Q ss_pred CCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeecccchhHHH
Q 031381 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 77 ~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~~~ 149 (160)
+...+....+.+.+++.+. .++.+.++|.|+|.|.+.|+...|.|.||+.+|. +..|.|||+...++.+++
T Consensus 122 gpe~ikyf~~~q~~deel~--rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~k 194 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELD--RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAK 194 (265)
T ss_pred CchheeeecchhhHHHHhc--cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHh
Confidence 4456667767788888775 4788899999999999999999999999999995 499999999999998543
No 111
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.28 E-value=3.7e-07 Score=65.34 Aligned_cols=31 Identities=35% Similarity=0.880 Sum_probs=28.6
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCC
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKH 130 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~ 130 (160)
+++++||+||++||++|+.+.|.+.++++++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~ 49 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY 49 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhC
Confidence 4589999999999999999999999998885
No 112
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.26 E-value=1.8e-07 Score=73.27 Aligned_cols=41 Identities=7% Similarity=0.096 Sum_probs=35.8
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeec
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDID 141 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid 141 (160)
.||++||.|||+||+.|+. .+.+++|.++|. |+.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4689999999999999975 889999999986 4899999774
No 113
>smart00594 UAS UAS domain.
Probab=98.26 E-value=6.3e-08 Score=70.60 Aligned_cols=73 Identities=8% Similarity=0.119 Sum_probs=53.3
Q ss_pred chhhhcccCCccCCCcceeEeeeecccccceeeeeec---cccccCCC-ceeeEEeeecccch--hH-HHHH-HHhhhhc
Q 031381 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQVGG--IW-RFWM-HFLIVFF 158 (160)
Q Consensus 87 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~---~~La~~~~-~v~~~kVDid~~~~--l~-~~~v-~~pv~~f 158 (160)
...|++.+..+++++|+++|+|+++||+.|+.+...+ +++.+... ++.++++|++..+. ++ ++.+ .||.+.+
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 4567888888889999999999999999999988743 33444443 48898999876554 33 3344 4887765
Q ss_pred c
Q 031381 159 S 159 (160)
Q Consensus 159 ~ 159 (160)
+
T Consensus 93 l 93 (122)
T smart00594 93 V 93 (122)
T ss_pred E
Confidence 3
No 114
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.25 E-value=1.8e-07 Score=56.64 Aligned_cols=54 Identities=22% Similarity=0.441 Sum_probs=41.9
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHH----H-HHHHhhhhc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWR----F-WMHFLIVFF 158 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~----~-~v~~pv~~f 158 (160)
++.||+.||++|+.+.+.++++....+++.+..+|+++..+..+ + ...+|++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 57899999999999999999984444569999999998876643 2 234676554
No 115
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.20 E-value=5.3e-07 Score=69.02 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=41.5
Q ss_pred CCcceeEeeeecc-cccceeeeeeccccccCCCceeeEEeeecccchhH
Q 031381 100 DSLPAIFYFTAAW-CGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIW 147 (160)
Q Consensus 100 ~~k~vvV~F~A~W-C~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~ 147 (160)
.||++||+||+.| |++|+...|.|.++.+++.++.++.|..|......
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~ 91 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQK 91 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHH
Confidence 4679999999999 99999999999999999878999999888654443
No 116
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.16 E-value=2.6e-07 Score=67.83 Aligned_cols=47 Identities=9% Similarity=0.148 Sum_probs=37.7
Q ss_pred CcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeecccchhH
Q 031381 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIW 147 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~ 147 (160)
++.+|++|++.||++|+...|.+.++.+++. ++.++.|..|..+...
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~ 72 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE 72 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH
Confidence 3455555679999999999999999999884 5999999988766554
No 117
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.09 E-value=1.2e-06 Score=66.67 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=38.7
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeecc
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~ 142 (160)
+++++||+||++||+.|....+.+.++.++|+ ++.++.|..|.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 46799999999999999999999999999987 48999998865
No 118
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.09 E-value=6.7e-07 Score=58.71 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=34.8
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHH------H-HHHhhhh
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRF------W-MHFLIVF 157 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~------~-v~~pv~~ 157 (160)
|+.||++||++|+.+.+.++++...| -.+|+++++...++ + ..+|+++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~-----~~idi~~~~~~~~~~~~~~~~~~~vP~i~ 56 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAY-----EWVDIEEDEGAADRVVSVNNGNMTVPTVK 56 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCce-----EEEeCcCCHhHHHHHHHHhCCCceeCEEE
Confidence 56899999999999999998875544 45788776665433 2 2467764
No 119
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.09 E-value=6.1e-07 Score=63.96 Aligned_cols=50 Identities=28% Similarity=0.525 Sum_probs=43.4
Q ss_pred CCcceeEeeeec-ccccceeeeeeccccccCCC--ceeeEEeeecccchhHHH
Q 031381 100 DSLPAIFYFTAA-WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 100 ~~k~vvV~F~A~-WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~~~ 149 (160)
.++++||.||+. ||++|+...+.+.++.++|+ ++.++.|..|..+++.++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 76 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQF 76 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhh
Confidence 458999999999 99999999999999998876 699999999877766544
No 120
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.07 E-value=4.3e-07 Score=67.03 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=39.2
Q ss_pred cceeEeee-ecccccceeeeeeccccccCCC--ceeeEEeeecccchhHHH
Q 031381 102 LPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 102 k~vvV~F~-A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~~~ 149 (160)
+++||.|| ++||+.|....|.+.++.++++ ++.++.|..|..+.+.++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 79 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAW 79 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHH
Confidence 67888787 9999999999999999988885 488999988765555443
No 121
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.05 E-value=5.4e-07 Score=65.75 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=41.0
Q ss_pred CcceeEeee-ecccccceeeeeeccccccCCC--ceeeEEeeecccchhHHH
Q 031381 101 SLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 101 ~k~vvV~F~-A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~~~ 149 (160)
+|++||+|| +.||+.|....+.+.++.+++. ++.++.|..|..+.+.++
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~ 74 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKF 74 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 679999999 5899999999999999888774 488999988876666554
No 122
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.04 E-value=2.3e-07 Score=71.46 Aligned_cols=60 Identities=20% Similarity=0.382 Sum_probs=41.7
Q ss_pred cccCCccCCCcceeEeeeecccccceeeee-ec--cccccCCC-ceeeEEeeecccchhHHHHH
Q 031381 92 SSLGKVKDDSLPAIFYFTAAWCGPCKFIWP-VI--GELSAKHP-HVTTYKIDIDQVGGIWRFWM 151 (160)
Q Consensus 92 ~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p-~~--~~La~~~~-~v~~~kVDid~~~~l~~~~v 151 (160)
+.+.++++++|+++|+++++||..|+.|.. .| .++++.+. +++-++||.|+.+++.+.++
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~ 91 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYM 91 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHH
Confidence 445556789999999999999999999986 44 34555553 48899999999999977653
No 123
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.04 E-value=2.1e-06 Score=62.71 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=37.8
Q ss_pred CCcceeEeeeeccccc-ceeeeeeccccccCCC-----ceeeEEeeeccc
Q 031381 100 DSLPAIFYFTAAWCGP-CKFIWPVIGELSAKHP-----HVTTYKIDIDQV 143 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~-Ck~l~p~~~~La~~~~-----~v~~~kVDid~~ 143 (160)
+++++||.||++||++ |....+.+.++.+++. ++.++.|.+|..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~ 70 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE 70 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC
Confidence 4679999999999997 9999999999988874 388989988653
No 124
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.00 E-value=3.7e-06 Score=64.28 Aligned_cols=50 Identities=18% Similarity=0.457 Sum_probs=37.6
Q ss_pred CCcceeEeeeecccccceeeeeecccccc----CCCceeeEEeeecccch-hHHH
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSA----KHPHVTTYKIDIDQVGG-IWRF 149 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~----~~~~v~~~kVDid~~~~-l~~~ 149 (160)
.||.+.++|.|.||++||.+.|.+.++.+ ....+.++.|+-|.+.+ ...|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y 86 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEY 86 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHH
Confidence 56899999999999999999998766544 43447777787775543 3444
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.00 E-value=1.8e-06 Score=57.69 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=31.2
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
|+.|+++||++|+.+.+.++++.-. +.+.++.||.+++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~ 39 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNG 39 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCCh
Confidence 5789999999999999999998833 23678888876544
No 126
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.98 E-value=1.4e-06 Score=56.09 Aligned_cols=49 Identities=16% Similarity=0.379 Sum_probs=36.0
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHH-----HHH-HHhhhhc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWR-----FWM-HFLIVFF 158 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~-----~~v-~~pv~~f 158 (160)
+..|+++||++|+.+.+.+++. ++.+..+|+++++...+ +++ .+|++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-----GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 5679999999999999888762 57888999987765432 232 3677654
No 127
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.89 E-value=1.5e-06 Score=64.94 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=40.9
Q ss_pred CCcceeEeeeec-ccccceeeeeeccccccCCC--ceeeEEeeecccchhHHH
Q 031381 100 DSLPAIFYFTAA-WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 100 ~~k~vvV~F~A~-WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~~~ 149 (160)
++|++||+||+. ||+.|+...+.+.++.+++. ++.++.|+.|..+.+.++
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~ 81 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRF 81 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 467999999986 68889999999988888874 489999999877666554
No 128
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.88 E-value=2.7e-06 Score=66.27 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=39.0
Q ss_pred CCcceeEeee-ecccccceeeeeeccccccCCC--ceeeEEeeecccch
Q 031381 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGG 145 (160)
Q Consensus 100 ~~k~vvV~F~-A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~ 145 (160)
.||++||+|| +.||++|....+.|.++.+++. ++.++.|.+|....
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~ 78 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFV 78 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHH
Confidence 4679999999 9999999999999998888874 58888888886543
No 129
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.88 E-value=3.1e-06 Score=57.60 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=36.0
Q ss_pred eeEeeeecccccceeeeeeccccccCCCceeeEEeeeccc
Q 031381 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQV 143 (160)
Q Consensus 104 vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~ 143 (160)
-|+.|+.+||+.|+.....++++.+++.++.+..+|++++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~ 41 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAE 41 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCC
Confidence 3678999999999999999999999887899999999865
No 130
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.85 E-value=3.4e-06 Score=64.58 Aligned_cols=46 Identities=7% Similarity=0.054 Sum_probs=39.0
Q ss_pred CCcceeEeee-ecccccceeeeeeccccccCCC--ceeeEEeeecccch
Q 031381 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGG 145 (160)
Q Consensus 100 ~~k~vvV~F~-A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~ 145 (160)
.+|.+||+|| +.||++|....+.+.++.++|. ++.++.|.+|....
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~ 76 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFS 76 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHH
Confidence 3579999999 8999999999999999998885 48888888876543
No 131
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.83 E-value=4.2e-06 Score=60.91 Aligned_cols=50 Identities=8% Similarity=0.124 Sum_probs=40.5
Q ss_pred CCcceeEeee-ecccccceeeeeeccccccCC--CceeeEEeeecccchhHHH
Q 031381 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKH--PHVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 100 ~~k~vvV~F~-A~WC~~Ck~l~p~~~~La~~~--~~v~~~kVDid~~~~l~~~ 149 (160)
.++++||+|| +.||+.|+...+.+.++.+++ +++.++.|..|....+.++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~ 73 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAW 73 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 4679999999 789999999999999998886 3588999988765544433
No 132
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=8.3e-06 Score=59.74 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=47.0
Q ss_pred ecchhhhcccCCccCCCcceeEeeee--------cccccceeeeeeccccccCCCc-eeeEEeeecccc
Q 031381 85 ESGEEFNSSLGKVKDDSLPAIFYFTA--------AWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVG 144 (160)
Q Consensus 85 ~s~~~f~~~l~~a~~~~k~vvV~F~A--------~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~ 144 (160)
...++|++.++... +++.++|+|++ +||+.|.+..|.+.+.-+..+. +.|+.|++.+-+
T Consensus 10 ~g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 10 PGYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRP 77 (128)
T ss_pred chHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCC
Confidence 34678888887653 44559999998 7999999999999888777665 999999987543
No 133
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.74 E-value=8.4e-06 Score=65.94 Aligned_cols=65 Identities=23% Similarity=0.404 Sum_probs=53.6
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEeeecccchhH-HHHH
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQVGGIW-RFWM 151 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDid~~~~l~-~~~v 151 (160)
-+...++++|.+++. .-+++.|+|+||+.|+.+.|.++..+.--.| |.+.+||+..++.+. +|.+
T Consensus 25 ~~~~~~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~v 92 (248)
T KOG0913|consen 25 KLTRIDEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLV 92 (248)
T ss_pred eeEEecccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEE
Confidence 344457999999983 2589999999999999999999998876555 999999999999985 4433
No 134
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.66 E-value=8.6e-06 Score=59.74 Aligned_cols=59 Identities=20% Similarity=0.500 Sum_probs=43.8
Q ss_pred eecchhhhcccCCccCCCcceeEeeee-------cccccceeeeeeccccccCCC-ceeeEEeeecc
Q 031381 84 IESGEEFNSSLGKVKDDSLPAIFYFTA-------AWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142 (160)
Q Consensus 84 v~s~~~f~~~l~~a~~~~k~vvV~F~A-------~WC~~Ck~l~p~~~~La~~~~-~v~~~kVDid~ 142 (160)
+.+-++|.+.+....+++++++|.|++ +||+.|+...|.+++.-+..+ +..++.|.+.+
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~ 68 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGD 68 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCC
Confidence 456788888887766788999999987 599999999999988776665 48888888753
No 135
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.64 E-value=1e-05 Score=66.81 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=58.8
Q ss_pred CCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHHHHH-Hhh
Q 031381 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRFWMH-FLI 155 (160)
Q Consensus 77 ~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~~v~-~pv 155 (160)
.-+.+..+.+.++|-+.+.+. .++..|||+||-+.++.|+.|...|..||++|+.+.|++|..+..+.+.++... .|+
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPt 201 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPT 201 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SE
T ss_pred cCceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCE
Confidence 356788888888898888653 345689999999999999999999999999999999999999876644555443 676
Q ss_pred hhc
Q 031381 156 VFF 158 (160)
Q Consensus 156 ~~f 158 (160)
++.
T Consensus 202 llv 204 (265)
T PF02114_consen 202 LLV 204 (265)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 136
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.56 E-value=2.3e-05 Score=53.74 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=34.3
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeeccc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQV 143 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~ 143 (160)
|+.|+.+||++|++....++++..+++++.+..+|++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~ 40 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE 40 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC
Confidence 577999999999999999999998887888888888753
No 137
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.51 E-value=6.3e-06 Score=61.07 Aligned_cols=60 Identities=20% Similarity=0.383 Sum_probs=41.4
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchh-HHH----HHHHhhhhcc
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI-WRF----WMHFLIVFFS 159 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l-~~~----~v~~pv~~f~ 159 (160)
.++.-++.|..+|||.|+...|.+.++++..|++.+--+..|+++++ .++ ..+.|+++|+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~ 104 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFL 104 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEE
Confidence 34567888999999999999999999999998887777788888776 344 3346877653
No 138
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.51 E-value=2.4e-05 Score=50.19 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=34.4
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHHH------HHHhhhhc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRFW------MHFLIVFF 158 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~~------v~~pv~~f 158 (160)
++.|+++||++|+.+...+++. ++.+..+|++.++...+.. ..+|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5679999999999988887763 4667777887665543321 35777653
No 139
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=9.6e-06 Score=65.14 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=54.9
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHH
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~ 149 (160)
+..+...++| .. ..++..|++|||.||.+|+.|..+++.+++..+++.+++++.++.+++...
T Consensus 3 v~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~ 65 (227)
T KOG0911|consen 3 VQFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNL 65 (227)
T ss_pred ceeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHH
Confidence 5566777888 32 378899999999999999999999999999998899999999999998654
No 140
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=1.4e-05 Score=59.06 Aligned_cols=75 Identities=17% Similarity=0.328 Sum_probs=61.6
Q ss_pred eecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHHH-HHH-HhhhhccC
Q 031381 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWRF-WMH-FLIVFFSY 160 (160)
Q Consensus 84 v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~~-~v~-~pv~~f~~ 160 (160)
+.+..+.+..+.. ...+.+||-|+-.|-+.|..|...+.++++...+ +.++-||+|+.++..++ .+. .|++.|||
T Consensus 8 L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 8 LHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 4566777777754 6788999999999999999999999999999988 89999999999888765 554 45566654
No 141
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.48 E-value=3.2e-05 Score=60.65 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=40.4
Q ss_pred CCcceeEeee-ecccccceeeeeeccccccCCC--ceeeEEeeecccchh
Q 031381 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGI 146 (160)
Q Consensus 100 ~~k~vvV~F~-A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l 146 (160)
.+|++|++|| +.||+.|....+.|.++.+++. |+.++.|..|.....
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~ 79 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTH 79 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence 4678999999 9999999999999999999984 488999998876543
No 142
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.39 E-value=4.4e-05 Score=60.29 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCCCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHH-HHH-
Q 031381 75 PDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRF-WMH- 152 (160)
Q Consensus 75 ~~~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~-~v~- 152 (160)
..+.+....|.++.+|-+.+ .+...||++||-+--..||.|...++.|++.+.+..|++||++..+-++.+ .++
T Consensus 62 ~~GhG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 62 SKGHGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV 137 (211)
T ss_pred HcCCceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE
Confidence 35778899999999999987 356689999999999999999999999999999999999999999977554 554
Q ss_pred Hhhhhc
Q 031381 153 FLIVFF 158 (160)
Q Consensus 153 ~pv~~f 158 (160)
.|++.+
T Consensus 138 LP~v~l 143 (211)
T KOG1672|consen 138 LPTVAL 143 (211)
T ss_pred eeeEEE
Confidence 465543
No 143
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.37 E-value=6e-05 Score=50.10 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=30.1
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeeccc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQV 143 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~ 143 (160)
|+.|+++||+.|+.+...++++...| .++.+|.+++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~---~~~~v~~~~~ 37 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP---AVVELDQHED 37 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc---EEEEEeCCCC
Confidence 57799999999999999999998855 6777777655
No 144
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.29 E-value=4.5e-05 Score=61.08 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=46.1
Q ss_pred CcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecc-----------cchhH-HHHHH-Hhhhhcc
Q 031381 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ-----------VGGIW-RFWMH-FLIVFFS 159 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~-----------~~~l~-~~~v~-~pv~~f~ 159 (160)
++.-+++||.+.|+.|+.+.|++..++++| |+.++.|++|. +.+++ ++++. +|++|+.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv 190 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLV 190 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEE
Confidence 568899999999999999999999999999 78888888873 24443 34554 6777653
No 145
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.29 E-value=6.9e-05 Score=47.65 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=30.1
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchh
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI 146 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l 146 (160)
|+.|+++||+.|+.+...+++.. +.+..+|++++++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~ 38 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGEL 38 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHH
Confidence 56799999999999999988775 56678888877654
No 146
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.26 E-value=3.9e-05 Score=61.38 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=38.2
Q ss_pred Ccc-eeEeeeecccccceeeeeeccccccCCC--ceeeEEeeecccch
Q 031381 101 SLP-AIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGG 145 (160)
Q Consensus 101 ~k~-vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~ 145 (160)
++. +|+.|+++||++|....+.|.++.++|. |+.++.|.+|....
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~ 75 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFS 75 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 445 5789999999999999999999999984 59999999987543
No 147
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.25 E-value=3.5e-05 Score=60.77 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=36.0
Q ss_pred ceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeecccc
Q 031381 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVG 144 (160)
Q Consensus 103 ~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~ 144 (160)
.+|+.||++||+.|....+.|.++.+++. |+.++.|.+|...
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~ 71 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVE 71 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 46679999999999999999999988885 4889999888654
No 148
>PRK15000 peroxidase; Provisional
Probab=97.22 E-value=8.3e-05 Score=58.76 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=39.0
Q ss_pred CCcceeEeeee-cccccceeeeeeccccccCCC--ceeeEEeeecccc
Q 031381 100 DSLPAIFYFTA-AWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVG 144 (160)
Q Consensus 100 ~~k~vvV~F~A-~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~ 144 (160)
++|.+||+||+ .||+.|....+.|.++.+++. |+.++.|.+|...
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~ 80 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEF 80 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 46899999999 599999999999999998885 4889999988654
No 149
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.21 E-value=0.00013 Score=53.30 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=35.4
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeee
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDi 140 (160)
.+.+.+|++|+..+|++|+.+.+.++++.++++++.++..++
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 456789999999999999999999999888887766666554
No 150
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.14 E-value=0.0001 Score=58.19 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=35.7
Q ss_pred Cccee-EeeeecccccceeeeeeccccccCCC--ceeeEEeeecccc
Q 031381 101 SLPAI-FYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVG 144 (160)
Q Consensus 101 ~k~vv-V~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~ 144 (160)
+|.+| +.||++||+.|....+.|.++.+++. |+.++.|.+|...
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~ 73 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIY 73 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 45555 47999999999999999999888875 4888899888543
No 151
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.96 E-value=0.00021 Score=58.93 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=36.7
Q ss_pred CCcceeEeee-ecccccceeeeeeccccccCCC--ceeeEEeeeccc
Q 031381 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQV 143 (160)
Q Consensus 100 ~~k~vvV~F~-A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~ 143 (160)
+++.+|++|| +.||++|....+.|.++.+++. |+.++.|.+|..
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~ 143 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSP 143 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 3557777777 9999999999999999988884 588889988874
No 152
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.94 E-value=0.0002 Score=57.27 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=37.5
Q ss_pred Cccee-EeeeecccccceeeeeeccccccCCC--ceeeEEeeecccch
Q 031381 101 SLPAI-FYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGG 145 (160)
Q Consensus 101 ~k~vv-V~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~ 145 (160)
+|.+| +.|+++||+.|....+.|.++.+++. |+.++.|.+|....
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~ 80 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNIS 80 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 45544 58999999999999999999999884 58999999886654
No 153
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.94 E-value=0.00024 Score=53.04 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=49.8
Q ss_pred hhhhcccCCccCCCcceeEeeeec--ccccceeeeeeccccccCCC-c-eeeEEeeecccchhH-HHHH-HHhhhhcc
Q 031381 88 EEFNSSLGKVKDDSLPAIFYFTAA--WCGPCKFIWPVIGELSAKHP-H-VTTYKIDIDQVGGIW-RFWM-HFLIVFFS 159 (160)
Q Consensus 88 ~~f~~~l~~a~~~~k~vvV~F~A~--WC~~Ck~l~p~~~~La~~~~-~-v~~~kVDid~~~~l~-~~~v-~~pv~~f~ 159 (160)
+++++++. .+...|+.|-.+ -++.+--+.-++++|+++|+ + +.+++||+|++++++ +|++ .+|+++||
T Consensus 25 ~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 25 SRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred ccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 44555542 233455555443 46778888889999999998 4 999999999999995 5677 48998876
No 154
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.87 E-value=0.00024 Score=47.64 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=34.1
Q ss_pred cceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHH----H-HHHhhhh
Q 031381 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRF----W-MHFLIVF 157 (160)
Q Consensus 102 k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~----~-v~~pv~~ 157 (160)
+.-|+.|+.+||+.|+.....|++. |+.+-.+|++++++.... + ..+|+++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~ 62 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF 62 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence 3457789999999999999888754 455566777655333221 2 2467664
No 155
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.71 E-value=0.00011 Score=54.69 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=57.1
Q ss_pred EeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHHH-HHHHhh-hhcc
Q 031381 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWRF-WMHFLI-VFFS 159 (160)
Q Consensus 83 ~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~~-~v~~pv-~~f~ 159 (160)
.+.+..+.++.+. .+++|.+||-|+-+|-+.|..|...+.+++++.++ +.++-||+++.++..++ .+.-|. ++||
T Consensus 4 ~L~s~~~VDqAI~--~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF 81 (133)
T PF02966_consen 4 HLHSGWHVDQAIL--SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMFF 81 (133)
T ss_dssp EE-SHHHHHHHHH--H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEEE
T ss_pred ccCccchHHHHHh--ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCCCeEEEEE
Confidence 3455667777764 36789999999999999999999999999999888 89999999999988654 344444 3444
No 156
>PRK13189 peroxiredoxin; Provisional
Probab=96.71 E-value=0.00038 Score=55.89 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=36.4
Q ss_pred Cc-ceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeecccc
Q 031381 101 SL-PAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVG 144 (160)
Q Consensus 101 ~k-~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~ 144 (160)
+| .+|+.||++||+.|....+.|.++.+++. |+.++.|.+|...
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~ 81 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVF 81 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 45 45568899999999999999999988884 5888899888654
No 157
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.69 E-value=0.00028 Score=47.80 Aligned_cols=53 Identities=17% Similarity=0.348 Sum_probs=44.5
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchh-HHHHHHHhhhhc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI-WRFWMHFLIVFF 158 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l-~~~~v~~pv~~f 158 (160)
|+.|+.+.|.-|......++++....+ +.+-.|||++++.+ .+|+.+.|++.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGYRIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCTSTSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcCCCCEEEE
Confidence 678999999999999999999887764 89999999988887 667878888653
No 158
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.62 E-value=0.0006 Score=46.36 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=31.1
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHH
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWR 148 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~ 148 (160)
|..|+.+||++|+.....|++ .|+.|-.+|++++++..+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~ 41 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAE 41 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHH
Confidence 567899999999998888855 368888889988776543
No 159
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.60 E-value=0.0006 Score=53.51 Aligned_cols=46 Identities=7% Similarity=0.073 Sum_probs=38.2
Q ss_pred CCcceeEeeee-cccccceeeeeeccccccCCC--ceeeEEeeecccch
Q 031381 100 DSLPAIFYFTA-AWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGG 145 (160)
Q Consensus 100 ~~k~vvV~F~A-~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~ 145 (160)
.||.+||+||+ .||+.|....+.+.++.+++. |+.++.|++|....
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~ 83 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYA 83 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 35789999995 889999999899999988886 58999998886543
No 160
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.55 E-value=0.00071 Score=44.21 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=28.4
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchh
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI 146 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l 146 (160)
|+.|+.+||+.|+.....+++. ++.+-.+|++++++.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~ 38 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPAL 38 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHH
Confidence 4678999999999998888764 456667777766554
No 161
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.54 E-value=0.00059 Score=44.83 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=34.8
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHHH-----HHHhhhh
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRFW-----MHFLIVF 157 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~~-----v~~pv~~ 157 (160)
|..|+.+||+.|+.....|++. ++.+-.+|++++++..+.. ..+|+++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~ 53 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIV 53 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEE
Confidence 3568899999999999888753 5677778888777664432 2467754
No 162
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.54 E-value=0.00053 Score=45.05 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=33.9
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHH------HHHHhhhhc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRF------WMHFLIVFF 158 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~------~v~~pv~~f 158 (160)
|+.|+.+||+.|+.....+++. ++.+-.+|++++++..+. ...+|++|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 4568999999999998888863 456667788776654332 124576653
No 163
>PHA03050 glutaredoxin; Provisional
Probab=96.53 E-value=0.0011 Score=47.69 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=27.9
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEee
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID 139 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVD 139 (160)
|+.|..+|||+|+.....|+++.-+++.+..+.||
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~ 49 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIK 49 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECC
Confidence 66799999999999999999887766555555555
No 164
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.28 E-value=0.001 Score=44.16 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=27.8
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchh
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI 146 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l 146 (160)
|+.|+.+||+.|+.....+++. ++.+-.+|++.++..
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~ 37 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPAL 37 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHH
Confidence 4568999999999999988865 355566677766544
No 165
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.22 E-value=0.0021 Score=45.11 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=29.3
Q ss_pred ceeEeee----ecccccceeeeeeccccccCCCceeeEEeeecccchhHHH
Q 031381 103 PAIFYFT----AAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 103 ~vvV~F~----A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~ 149 (160)
.+||+-. ++||++|+.....|+++. +.+..+|++++++..+.
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~-----i~~~~~di~~~~~~~~~ 58 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACG-----VPFAYVNVLEDPEIRQG 58 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcC-----CCEEEEECCCCHHHHHH
Confidence 5555443 389999999988887753 45667788776655443
No 166
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0011 Score=60.91 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=49.3
Q ss_pred chhhhcccCCccCCCcceeEeeeecccccceeeeee-c--cccccCCC-ceeeEEeeecccchhHHHHHHH
Q 031381 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPV-I--GELSAKHP-HVTTYKIDIDQVGGIWRFWMHF 153 (160)
Q Consensus 87 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~-~--~~La~~~~-~v~~~kVDid~~~~l~~~~v~~ 153 (160)
.+.|++ ++.++||+++-.+.+||--|+.|... | +++++-.. +++-+|||.++-+++.+.++..
T Consensus 33 ~eAf~~----A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~ 99 (667)
T COG1331 33 EEAFAK----AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNA 99 (667)
T ss_pred HHHHHH----HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHH
Confidence 444554 46889999999999999999999873 2 44555543 4899999999999998876643
No 167
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.15 E-value=0.0029 Score=39.86 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=28.6
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhH
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIW 147 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~ 147 (160)
|+.|+.+||++|+.....|++. ++.+-.+|++++++..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~ 38 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAR 38 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHH
Confidence 5679999999999998888543 3667777777765443
No 168
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.04 E-value=0.0027 Score=43.66 Aligned_cols=43 Identities=16% Similarity=0.314 Sum_probs=29.0
Q ss_pred cceeEeeee----cccccceeeeeeccccccCCCceeeEEeeecccchhHHH
Q 031381 102 LPAIFYFTA----AWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 102 k~vvV~F~A----~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~ 149 (160)
.++||+-.. +||+.|+.....|++.. +.+-.+|+++++++.+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~ 54 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQG 54 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHH
Confidence 355554332 79999999988887764 45666677666655443
No 169
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.98 E-value=0.0023 Score=45.05 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=26.4
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccch
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGG 145 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~ 145 (160)
|+.|..+||++|++....++++.-. +-.+|+|++++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~-----~~~vdid~~~~ 45 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVN-----PAVHEIDKEPA 45 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC-----CEEEEcCCCcc
Confidence 5669999999999999888876443 34556665544
No 170
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.89 E-value=0.0023 Score=52.69 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=37.6
Q ss_pred CcceeEeeeecccccceeeeeeccccccCCCceeeEEeeeccc
Q 031381 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQV 143 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~ 143 (160)
++.-+|+||..-|+.|+.+.|++..++++| |+.++.|++|..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~ 191 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGT 191 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCC
Confidence 448899999999999999999999999999 588888888765
No 171
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.82 E-value=0.0013 Score=43.78 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=37.7
Q ss_pred eeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHHHHH-Hhhhh
Q 031381 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRFWMH-FLIVF 157 (160)
Q Consensus 107 ~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~~v~-~pv~~ 157 (160)
.+++++|+.|..+...++++.++++ +.+=-+|+++.+++.+|++. .|+++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalv 54 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALV 54 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEE
Confidence 3468889999999999999999984 66666666777777777664 57654
No 172
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.81 E-value=0.004 Score=46.83 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=34.8
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeee
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDI 140 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDi 140 (160)
++++.|++|+...|++|+.+.+.++++.+++++ +.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 567999999999999999999999999988875 66655554
No 173
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.73 E-value=0.002 Score=42.07 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=27.4
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccch
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGG 145 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~ 145 (160)
|+.|..+||+.|+.....+++. ++.+..+|++++++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~ 38 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDIT 38 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChh
Confidence 5679999999999998888754 45666777776553
No 174
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.63 E-value=0.0031 Score=51.70 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=35.6
Q ss_pred CcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecc
Q 031381 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~ 142 (160)
++.-+++||.+-|+.|+.+.|+++.++++| |+.++.|++|.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG 183 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDG 183 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCC
Confidence 348899999999999999999999999999 57777777664
No 175
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=95.60 E-value=0.0017 Score=47.09 Aligned_cols=69 Identities=9% Similarity=0.126 Sum_probs=46.7
Q ss_pred hhhcccCCccCCCcceeEeeeec----ccccceeeeeeccccccCC-CceeeEEeeecccch--hHHH-HH-HHhhhhc
Q 031381 89 EFNSSLGKVKDDSLPAIFYFTAA----WCGPCKFIWPVIGELSAKH-PHVTTYKIDIDQVGG--IWRF-WM-HFLIVFF 158 (160)
Q Consensus 89 ~f~~~l~~a~~~~k~vvV~F~A~----WC~~Ck~l~p~~~~La~~~-~~v~~~kVDid~~~~--l~~~-~v-~~pv~~f 158 (160)
.|++.+..++++.|.++|++|++ ||..|+..... +++.+.. .++.+.+.|++..+. ++.. .+ .||.+.+
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAM 82 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence 46677777789999999999999 99999765431 2222222 248999999986653 2332 33 4777654
No 176
>PRK10638 glutaredoxin 3; Provisional
Probab=95.39 E-value=0.0054 Score=41.26 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=27.5
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchh
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI 146 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l 146 (160)
|+.|..+||+.|+...-.+++.. +.+-.+|++++++.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g-----i~y~~~dv~~~~~~ 40 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG-----VSFQEIPIDGDAAK 40 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CCcEEEECCCCHHH
Confidence 55688899999999988888653 44556677766544
No 177
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.06 E-value=0.003 Score=45.38 Aligned_cols=65 Identities=11% Similarity=0.258 Sum_probs=47.4
Q ss_pred EEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHH
Q 031381 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWR 148 (160)
Q Consensus 82 ~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~ 148 (160)
..+.+.++|++++.+ ..+++++|+=+.+.|+-.++....|++..+..++ +.++.+|+-+++++..
T Consensus 2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn 67 (105)
T PF11009_consen 2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSN 67 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHH
T ss_pred CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHH
Confidence 467889999999864 5678999999999999999999999998888777 9999999988887743
No 178
>PTZ00062 glutaredoxin; Provisional
Probab=94.74 E-value=0.007 Score=48.23 Aligned_cols=35 Identities=9% Similarity=0.031 Sum_probs=25.8
Q ss_pred ecccccceeeeeeccccccCCCceeeEEeeecccchhHHH
Q 031381 110 AAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 110 A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~ 149 (160)
.+||+.|+.+...|++. ++.+..+|+++++++.+.
T Consensus 125 ~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~ 159 (204)
T PTZ00062 125 FPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREE 159 (204)
T ss_pred CCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHH
Confidence 37999999988888765 455667788877766444
No 179
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.74 E-value=0.0051 Score=55.37 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=47.4
Q ss_pred CcceeE-eeeecccccceeeeeeccccccCCCceeeEEeeecccchhH-HHHH-HHhhhh
Q 031381 101 SLPAIF-YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIW-RFWM-HFLIVF 157 (160)
Q Consensus 101 ~k~vvV-~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~-~~~v-~~pv~~ 157 (160)
++++-| .|.++||+.|......+.+++.+.|+|..-.+|+++.++++ +|.+ ..|.++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~ 534 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIV 534 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEE
Confidence 456544 55899999999999999999999999999999999999997 6755 467654
No 180
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.67 E-value=0.0093 Score=53.13 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=46.9
Q ss_pred ceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHH-HHH-HHhhhh
Q 031381 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWR-FWM-HFLIVF 157 (160)
Q Consensus 103 ~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~-~~v-~~pv~~ 157 (160)
.-+-.|.+++|++|......+++++...|+|.+-.||..+++++++ |.+ .+|.++
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~ 174 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVF 174 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEE
Confidence 4588899999999999999999999999999999999999999854 544 467654
No 181
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.57 E-value=0.021 Score=44.96 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=33.8
Q ss_pred CcceeEeeeecccccceeeeeec---cccccCCCc-eeeEEeeec
Q 031381 101 SLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPH-VTTYKIDID 141 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l~p~~---~~La~~~~~-v~~~kVDid 141 (160)
+++.||+|+.-.|++|+.+.+.+ +.+.+.+++ +.++++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 46789999999999999999976 788888874 777766653
No 182
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.50 E-value=0.015 Score=38.55 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.1
Q ss_pred eEeeeecccccceeeeeeccccccCCCc-eeeEEeee
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDI 140 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDi 140 (160)
|+.|+..+|++|..+.+.++++.+.+++ +.+....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 4689999999999999999998755544 55555554
No 183
>PRK10824 glutaredoxin-4; Provisional
Probab=94.49 E-value=0.019 Score=41.76 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=28.2
Q ss_pred cceeEeeee----cccccceeeeeeccccccCCCceeeEEeeecccchhHHH
Q 031381 102 LPAIFYFTA----AWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 102 k~vvV~F~A----~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~ 149 (160)
.+|||+-.. +||+.|+.....|.++... +..+|+++++++.+.
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~-----~~~idi~~d~~~~~~ 61 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGER-----FAYVDILQNPDIRAE 61 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCC-----ceEEEecCCHHHHHH
Confidence 355554433 6999999999888887544 344577666655443
No 184
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.20 E-value=0.011 Score=43.69 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=34.5
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCC--Cc-eeeEEeee
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH--PH-VTTYKIDI 140 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~--~~-v~~~kVDi 140 (160)
.+.+++|+.|+..-|++|+.+.+.+.++.++| ++ +.++..++
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 45678899999999999999999999988887 55 77777766
No 185
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.88 E-value=0.039 Score=42.93 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=24.5
Q ss_pred CCCcceeEeeeecccccceeeeeeccc
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGE 125 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~ 125 (160)
.+++..|+.|+.++|++|+.+.+.+++
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 457899999999999999999999887
No 186
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.85 E-value=0.02 Score=45.78 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=51.6
Q ss_pred CCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeee
Q 031381 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140 (160)
Q Consensus 77 ~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDi 140 (160)
--+.|..|. ..+|.+.+.+| .++..|||+.|...-+.|+.+...++.|+.+||.++|+++=.
T Consensus 89 kfG~V~~IS-g~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~a 150 (240)
T KOG3170|consen 89 KFGEVFPIS-GPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPA 150 (240)
T ss_pred cccceeecc-chHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccc
Confidence 346677774 66666666554 568899999999999999999999999999999999999854
No 187
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.025 Score=40.53 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=28.7
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccc-hhHHH
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG-GIWRF 149 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~-~l~~~ 149 (160)
||.|.-+||+.|+.+...|.++.- ...++.+|-+.+. ++.++
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~~v---~~~vvELD~~~~g~eiq~~ 58 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDLGV---NPKVVELDEDEDGSEIQKA 58 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhCCC---CCEEEEccCCCCcHHHHHH
Confidence 445899999999998777777222 2577777776444 44444
No 188
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.012 Score=39.74 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=26.4
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
++.|.-+||++|++....+++. |+.+..+|+++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~ 37 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDE 37 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCc
Confidence 5678999999999988877732 4666666776655
No 189
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=92.67 E-value=0.026 Score=45.99 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=50.2
Q ss_pred CCCCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecc
Q 031381 75 PDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQ 142 (160)
Q Consensus 75 ~~~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~ 142 (160)
.+++.+++.+.... ...+++- .+.++|+|++|++-.||+-..-...|++++++|.+ +.|+-|-+++
T Consensus 78 ~APns~vv~l~g~~-~~~ildf-~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~E 144 (237)
T PF00837_consen 78 PAPNSPVVTLDGQR-SCRILDF-AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEE 144 (237)
T ss_pred CCCCCceEeeCCCc-ceeHHHh-ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhh
Confidence 56777888885433 2333322 25789999999999999999999999999999988 5677666543
No 190
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=92.60 E-value=0.057 Score=43.61 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=30.5
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCCceeeEEe
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI 138 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kV 138 (160)
.+++.+|+.|.-+.||+|+++.+.++++.+. +|.+..+
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~ 142 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYL 142 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEE
Confidence 4678899999999999999999999887653 4555444
No 191
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.71 E-value=0.052 Score=48.38 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=47.0
Q ss_pred cceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhH-HHHH-HHhhhh
Q 031381 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIW-RFWM-HFLIVF 157 (160)
Q Consensus 102 k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~-~~~v-~~pv~~ 157 (160)
..-+-.|..+.|++|......+.+++...|+|..-.+|..++++++ +|.+ .+|.++
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~ 175 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVF 175 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEE
Confidence 3458889999999999999999999999999999999999999985 4544 467654
No 192
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=91.41 E-value=0.074 Score=46.46 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=29.0
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccchh
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI 146 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l 146 (160)
|+.|..+||++|+.....+++. |+.+-.+|+|+++..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~ 40 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKR 40 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhH
Confidence 6779999999999988777764 566777888766643
No 193
>PHA03075 glutaredoxin-like protein; Provisional
Probab=90.93 E-value=0.08 Score=38.71 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=27.3
Q ss_pred cceeEeeeecccccceeeeeeccccccCCC
Q 031381 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHP 131 (160)
Q Consensus 102 k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~ 131 (160)
|.++|.|+-|.|+.|+.....+++|..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 468999999999999999999999999883
No 194
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=90.72 E-value=0.091 Score=39.59 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=37.1
Q ss_pred CcceeEeeeecccccceee-eeeccccccCCC--ce-eeEEeeecccchhHH
Q 031381 101 SLPAIFYFTAAWCGPCKFI-WPVIGELSAKHP--HV-TTYKIDIDQVGGIWR 148 (160)
Q Consensus 101 ~k~vvV~F~A~WC~~Ck~l-~p~~~~La~~~~--~v-~~~kVDid~~~~l~~ 148 (160)
+..+|+.|.+.||+.|-.. .+.|.+..+++. |+ .++.|..|......+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~ 81 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKA 81 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHH
Confidence 4567777789999999998 888888887774 46 588888887665443
No 195
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=90.65 E-value=0.16 Score=41.23 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHHHHH-HHhh
Q 031381 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWRFWM-HFLI 155 (160)
Q Consensus 77 ~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~~~v-~~pv 155 (160)
..+.|..+.+.++|-+.+.+- .+.-.++|+.|-+.-..|-.+...+.-|+.+||-+.|++|-...-..-.+|.. ..|+
T Consensus 136 ~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 136 RYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLNVLPT 214 (273)
T ss_pred ccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccchhhhcccCCce
Confidence 456889999999999998642 24567899999999999999999999999999999999998765544455533 3566
Q ss_pred hhc
Q 031381 156 VFF 158 (160)
Q Consensus 156 ~~f 158 (160)
++|
T Consensus 215 Lli 217 (273)
T KOG3171|consen 215 LLI 217 (273)
T ss_pred EEE
Confidence 543
No 196
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=90.60 E-value=0.16 Score=41.53 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=31.1
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCCceeeEEee
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID 139 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVD 139 (160)
.+++.+|+.|.-+.|++|+++.+.+.++.+. ++|.+..+.
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip 154 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHIL 154 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEe
Confidence 4567889999999999999999988877665 345555554
No 197
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.60 E-value=0.15 Score=35.73 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=25.4
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
+..|+.++|+.|++....+++. |+.+-.+|+.+++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEP 35 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCC
Confidence 3568999999999987777664 4556666765544
No 198
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=88.69 E-value=0.15 Score=36.77 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=46.1
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeeecccccc---eeeeeeccccccCCCc-eeeEEeeecccchh-HHHHH-HHh
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPC---KFIWPVIGELSAKHPH-VTTYKIDIDQVGGI-WRFWM-HFL 154 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~C---k~l~p~~~~La~~~~~-v~~~kVDid~~~~l-~~~~v-~~p 154 (160)
...+ +.+++++.+. .+...|+ |.+..|.-| ..+.=++.||.+.+++ +..+-++-+.+..+ .+|++ ++|
T Consensus 11 ~~~v-d~~~ld~~l~----~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 11 WPRV-DADTLDAFLA----APGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWP 84 (107)
T ss_dssp EEEE--CCCHHHHHH----CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred Ceee-chhhHHHHHh----CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCC
Confidence 3344 3677777773 2345555 444444444 4444488999999988 77777776666677 56777 589
Q ss_pred hhhcc
Q 031381 155 IVFFS 159 (160)
Q Consensus 155 v~~f~ 159 (160)
.++|+
T Consensus 85 aLvf~ 89 (107)
T PF07449_consen 85 ALVFF 89 (107)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 98875
No 199
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=87.40 E-value=0.26 Score=33.32 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=39.0
Q ss_pred EEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCC-ceeeEEee
Q 031381 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKID 139 (160)
Q Consensus 82 ~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~-~v~~~kVD 139 (160)
..+.+.+++++++ +.++.+||-|+.++|+ .....|.++++.+. ++.|+.++
T Consensus 2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~ 53 (97)
T cd02981 2 KELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS 53 (97)
T ss_pred eecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC
Confidence 4566788888876 4677899999999998 45667888888885 47776665
No 200
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=86.59 E-value=0.26 Score=36.93 Aligned_cols=73 Identities=10% Similarity=0.175 Sum_probs=53.7
Q ss_pred EEeecchhhhcccCCccCCCcc-eeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecccchhHHH-HH---HHhh
Q 031381 82 LVIESGEEFNSSLGKVKDDSLP-AIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQVGGIWRF-WM---HFLI 155 (160)
Q Consensus 82 ~~v~s~~~f~~~l~~a~~~~k~-vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~~~~l~~~-~v---~~pv 155 (160)
+...+.+++..+. ..+++ +++.|..........+...++++++++.+ +.|+.+|.+..+.+.++ ++ .+|.
T Consensus 79 v~~~t~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~ 154 (184)
T PF13848_consen 79 VPELTPENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPA 154 (184)
T ss_dssp CEEESTTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSE
T ss_pred ccccchhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCE
Confidence 3344677888887 34544 77777766677778888889999999988 99999999977776554 44 3566
Q ss_pred hhc
Q 031381 156 VFF 158 (160)
Q Consensus 156 ~~f 158 (160)
+.+
T Consensus 155 ~vi 157 (184)
T PF13848_consen 155 LVI 157 (184)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 201
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.88 E-value=0.82 Score=38.84 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=59.7
Q ss_pred CCCcceEEeecchhhhcccCCccCCCcceeEeeeec----ccccceeeeeeccccccCC----C-----ceeeEEeeecc
Q 031381 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAA----WCGPCKFIWPVIGELSAKH----P-----HVTTYKIDIDQ 142 (160)
Q Consensus 76 ~~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~----WC~~Ck~l~p~~~~La~~~----~-----~v~~~kVDid~ 142 (160)
..+.+++.. +.+.|.+++. ..-.+--+++.|.|. -|.-|+....+|.-++..+ + .+-|.+||.|+
T Consensus 37 ts~~~VI~~-n~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e 114 (331)
T KOG2603|consen 37 TSESGVIRM-NDDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE 114 (331)
T ss_pred cCCCCeEEe-cCcchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc
Confidence 456678888 5889999986 345566688999984 5999999999888887654 1 27899999999
Q ss_pred cchhHHH-HH-HHhhh
Q 031381 143 VGGIWRF-WM-HFLIV 156 (160)
Q Consensus 143 ~~~l~~~-~v-~~pv~ 156 (160)
.+++.+. .+ ..|.+
T Consensus 115 ~p~~Fq~l~ln~~P~l 130 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHL 130 (331)
T ss_pred cHHHHHHhcccCCCeE
Confidence 9998765 33 34543
No 202
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=85.55 E-value=0.23 Score=45.26 Aligned_cols=65 Identities=17% Similarity=0.330 Sum_probs=48.8
Q ss_pred chhhhcccCCccCCCcceeEeeeecccccceeeeee-c--cccccCCC-ceeeEEeeecccchhHHHHHHHhh
Q 031381 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPV-I--GELSAKHP-HVTTYKIDIDQVGGIWRFWMHFLI 155 (160)
Q Consensus 87 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~-~--~~La~~~~-~v~~~kVDid~~~~l~~~~v~~pv 155 (160)
.+.|++. ++++|++++-..=+.|-.|..|... | ++.++... +++-+|||.++-+++.+.++.|-+
T Consensus 102 qeaf~ka----r~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~ 170 (786)
T KOG2244|consen 102 QEAFNKA----RAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVV 170 (786)
T ss_pred HHHHHHH----HhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHH
Confidence 4555554 5889999999999999999999874 2 33455443 477888899999999887665543
No 203
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=85.12 E-value=0.43 Score=34.19 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=27.0
Q ss_pred EeeeecccccceeeeeeccccccCCCceeeEEeeecccchh
Q 031381 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI 146 (160)
Q Consensus 106 V~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l 146 (160)
..|+.++|+.|++....+++- |+.+-.+|+.+.+..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~ 37 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDGPT 37 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCChhh
Confidence 368999999999988777763 566777787665544
No 204
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=85.06 E-value=0.52 Score=35.67 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=27.1
Q ss_pred eEeeeec------ccccceeeeeeccccccCCCceeeEEeeecccchh
Q 031381 105 IFYFTAA------WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGI 146 (160)
Q Consensus 105 vV~F~A~------WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l 146 (160)
|+.|+++ ||++|+.+...|+++ +|.+-.+|++.+++.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~ 44 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGF 44 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHH
Confidence 3456666 999999998888775 366677788766554
No 205
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=84.80 E-value=0.45 Score=35.03 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=25.9
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccch
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGG 145 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~ 145 (160)
+..|+.+||+.|++....+++. |+.+-.+|+.+++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCChh
Confidence 4578999999999987666554 45666677665543
No 206
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=83.38 E-value=0.5 Score=33.64 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=25.4
Q ss_pred EeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 106 V~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
..|+.++|+.|++....+++. |+.+-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCc
Confidence 468999999999988777663 5666777776554
No 207
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=82.87 E-value=0.56 Score=33.22 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=24.6
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
+..|+.+||+.||+....+++- |+.+-.+|+.+++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCC
Confidence 3568999999999987777654 4555556665443
No 208
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=82.27 E-value=0.43 Score=36.59 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=39.5
Q ss_pred CCCcceeEeee-ecccccceeeeeeccccccCCC--ceeeEEeeecccchhHHH
Q 031381 99 DDSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 99 ~~~k~vvV~F~-A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~~~~l~~~ 149 (160)
-.+++||++|| ..|++.|-..+-.|.++.+++. |+.++.|..|......++
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 35668888888 5789999988888888877765 488999988876665444
No 209
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.07 E-value=0.74 Score=35.64 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=34.8
Q ss_pred ccCCCcceeEeeeecccccceeeeeec---cccccCCCc-eeeEEeeec
Q 031381 97 VKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPH-VTTYKIDID 141 (160)
Q Consensus 97 a~~~~k~vvV~F~A~WC~~Ck~l~p~~---~~La~~~~~-v~~~kVDid 141 (160)
+..++|-.++.|..+.|..|..+...+ +++.+-+.+ +.++.+|+.
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~ 86 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNIS 86 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEec
Confidence 357889999999999999999998866 445555543 778888764
No 210
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=77.17 E-value=0.44 Score=42.98 Aligned_cols=76 Identities=8% Similarity=0.091 Sum_probs=53.4
Q ss_pred cceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhH-HHHH-HHhhh
Q 031381 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIW-RFWM-HFLIV 156 (160)
Q Consensus 79 ~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~-~~~v-~~pv~ 156 (160)
+.++.....+++.+.+.++ ++...++.|+.+-|..|..+...++++++.-+.+.+...|.+++.+.+ ++++ +.|.+
T Consensus 346 ~~~l~~~~~~~l~~~~~~l--~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~ 423 (555)
T TIGR03143 346 GSLLDDSLRQQLVGIFGRL--ENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTV 423 (555)
T ss_pred hhccCHHHHHHHHHHHHhc--CCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEE
Confidence 3455555666778877643 333567788888999999999999999977666888888877666654 3444 34543
No 211
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=77.12 E-value=1.4 Score=31.43 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=25.0
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
+..|+.++|+.|++....+++. |+.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCCc
Confidence 4468889999999987777764 4556666665443
No 212
>PRK12559 transcriptional regulator Spx; Provisional
Probab=76.83 E-value=1.3 Score=32.58 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=24.9
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
+..|+.++|+.|++....+++- |+.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCCc
Confidence 5679999999999977666554 4555666665444
No 213
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=74.52 E-value=2 Score=35.40 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=26.0
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCCce
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHV 133 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v 133 (160)
.+||+.|++..+.||+.|...+=.+-..-.+|+++
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 57899999999999999987765444434445444
No 214
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.46 E-value=2.4 Score=33.63 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=30.5
Q ss_pred CCcceeEeeeecccccceeeeeeccccccCCCceeeEEee
Q 031381 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID 139 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVD 139 (160)
.++.+++.|.-.-|++|+...+.+++....++++.+...+
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~ 122 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLRE 122 (244)
T ss_pred CCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEE
Confidence 3478999999999999999999888876666654444443
No 215
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=69.33 E-value=2.1 Score=30.49 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=39.9
Q ss_pred cchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccC---CCc-eeeEEeeecccchhHHH
Q 031381 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK---HPH-VTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 86 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~---~~~-v~~~kVDid~~~~l~~~ 149 (160)
+.++.+.+. +.+.+..+.|+ -=..-..+...+.+++++ +.| +.|+.+|.++.....++
T Consensus 5 t~e~~~~~~----~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~ 66 (111)
T cd03072 5 TFENAEELT----EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLH 66 (111)
T ss_pred ccccHHHHh----cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHH
Confidence 455566665 34445555555 222335677889999999 987 99999999988766554
No 216
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=68.21 E-value=4.2 Score=32.22 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=33.8
Q ss_pred CCCcceeEeeeecccc-cceeeeeeccccccCCC-----ceeeEEeeecccchhHHH
Q 031381 99 DDSLPAIFYFTAAWCG-PCKFIWPVIGELSAKHP-----HVTTYKIDIDQVGGIWRF 149 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~-~Ck~l~p~~~~La~~~~-----~v~~~kVDid~~~~l~~~ 149 (160)
-+|++++|+|.=+.|+ .|-.+...+.++.++.. ++.++.|-+|-+.+..+.
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~ 121 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEV 121 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHH
Confidence 4789999999988888 79888876655554443 355555555544444333
No 217
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=68.14 E-value=2.3 Score=27.06 Aligned_cols=33 Identities=3% Similarity=0.006 Sum_probs=23.2
Q ss_pred EeeeecccccceeeeeeccccccCCCceeeEEeeec
Q 031381 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141 (160)
Q Consensus 106 V~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid 141 (160)
+.|+..||+.|.+..-.+++..-.| .++.+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~---e~~~v~~~ 34 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITV---ELREVELK 34 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCc---EEEEeCCC
Confidence 3578899999999877777665544 45555654
No 218
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=67.96 E-value=4 Score=29.90 Aligned_cols=74 Identities=11% Similarity=0.145 Sum_probs=50.6
Q ss_pred ceEEeecchhhhcccCCccCCCcceeEeeeec--cccc-c-eeeeeeccccccCCCc--eeeEEeeecccchhHHH-HH-
Q 031381 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAA--WCGP-C-KFIWPVIGELSAKHPH--VTTYKIDIDQVGGIWRF-WM- 151 (160)
Q Consensus 80 ~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~--WC~~-C-k~l~p~~~~La~~~~~--v~~~kVDid~~~~l~~~-~v- 151 (160)
.++.+.+.+.+++... .++.++|-|.-. -|.. + ..+...+.+++++|.+ +.|+.+|.++...+.++ ++
T Consensus 3 ~~~~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~ 78 (130)
T cd02983 3 EIIELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIG 78 (130)
T ss_pred ceEEecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCC
Confidence 5788888888887763 245666666422 1222 2 3456788999999976 89999999998877554 44
Q ss_pred --HHhhhh
Q 031381 152 --HFLIVF 157 (160)
Q Consensus 152 --~~pv~~ 157 (160)
.||.+.
T Consensus 79 ~~~~P~v~ 86 (130)
T cd02983 79 GFGYPAMV 86 (130)
T ss_pred ccCCCEEE
Confidence 377654
No 219
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=63.78 E-value=1.4 Score=33.82 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=24.5
Q ss_pred eeeecccccceeeeeeccccccCCCc-eeeEEe
Q 031381 107 YFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKI 138 (160)
Q Consensus 107 ~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kV 138 (160)
+|.-|+|+.|-.+.|.+.++.++|++ +.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 69999999999999999999999986 544433
No 220
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=62.61 E-value=2.6 Score=34.43 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=37.0
Q ss_pred CCCcceeEeeeecccccceeeeeeccccc-----cCCCceeeEEeeecc
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELS-----AKHPHVTTYKIDIDQ 142 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La-----~~~~~v~~~kVDid~ 142 (160)
..|+++||-+--.+|..|..-+..++.|. +-|++|.|+-||-..
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 46789999999999999999889898887 445779999999543
No 221
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=62.24 E-value=1.8 Score=33.25 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=37.1
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCCc--eeeEEeeecc--------cchhHHH-----HHHHhhh
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQ--------VGGIWRF-----WMHFLIV 156 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDid~--------~~~l~~~-----~v~~pv~ 156 (160)
-.+|+++|.=.|+-||.-- -..-++.|.++|.+ +.++..-+++ ++++.++ +|+||++
T Consensus 23 ~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f 94 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMF 94 (162)
T ss_pred hCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeee
Confidence 4688999999999999743 22344556666754 7777776542 3455444 6677763
No 222
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=62.03 E-value=4 Score=30.07 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=24.1
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
+..|+-++|+.|++....+++- |+.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCCCC
Confidence 4468889999999977666553 4556666665443
No 223
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=59.81 E-value=3.1 Score=31.82 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=28.7
Q ss_pred CCcceeEeeeecccc-cceeeeeeccccccCC----CceeeEEeeec
Q 031381 100 DSLPAIFYFTAAWCG-PCKFIWPVIGELSAKH----PHVTTYKIDID 141 (160)
Q Consensus 100 ~~k~vvV~F~A~WC~-~Ck~l~p~~~~La~~~----~~v~~~kVDid 141 (160)
.||++||+|.=..|+ .|-.+...+.++.+++ .++.++.|-+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 678999999999995 7887777665555433 24666666555
No 224
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=58.58 E-value=3.3 Score=31.29 Aligned_cols=27 Identities=26% Similarity=0.612 Sum_probs=24.5
Q ss_pred eEeeeecccccceeeeeeccccccCCC
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHP 131 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~ 131 (160)
|.+|+-+.|+.|-...+.++++.++|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568889999999999999999999984
No 225
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=57.63 E-value=1.7 Score=32.81 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=29.7
Q ss_pred eeEeeeecccccceeeeeeccccccCCCc--eeeEEeee
Q 031381 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDI 140 (160)
Q Consensus 104 vvV~F~A~WC~~Ck~l~p~~~~La~~~~~--v~~~kVDi 140 (160)
.|.+|+..-|+.|-...+.++++.+++++ |.+.-+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 36788999999999999999999999966 44444443
No 226
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.89 E-value=3.5 Score=28.07 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=18.6
Q ss_pred EeeeecccccceeeeeeccccccCC
Q 031381 106 FYFTAAWCGPCKFIWPVIGELSAKH 130 (160)
Q Consensus 106 V~F~A~WC~~Ck~l~p~~~~La~~~ 130 (160)
+.|++..||.|......++++--.|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y 29 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY 29 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc
Confidence 5799999999987666666654444
No 227
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=55.27 E-value=3.7 Score=35.56 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=43.3
Q ss_pred CCCcceEEeecchhhhcccCCccCCCcceeEeeeecccccceeeeee------ccccccCC---CceeeEEeeecccchh
Q 031381 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPV------IGELSAKH---PHVTTYKIDIDQVGGI 146 (160)
Q Consensus 76 ~~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~------~~~La~~~---~~v~~~kVDid~~~~l 146 (160)
.+...++.+ |..+|.+++ ++.+.++|+||.+--.. +..... +-+|+++. .||.|+.||..++..+
T Consensus 31 DGkDRVi~L-neKNfk~~l----Kkyd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~kl 104 (383)
T PF01216_consen 31 DGKDRVIDL-NEKNFKRAL----KKYDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKL 104 (383)
T ss_dssp SSS--CEEE--TTTHHHHH----HH-SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHH
T ss_pred CCccceEEc-chhHHHHHH----HhhcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHH
Confidence 455667777 689999998 45678999999987432 322221 22333332 4699999999999999
Q ss_pred HHH-HH
Q 031381 147 WRF-WM 151 (160)
Q Consensus 147 ~~~-~v 151 (160)
+++ ++
T Consensus 105 AKKLgv 110 (383)
T PF01216_consen 105 AKKLGV 110 (383)
T ss_dssp HHHHT-
T ss_pred HHhcCc
Confidence 876 44
No 228
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=53.47 E-value=4.3 Score=28.91 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=28.8
Q ss_pred cceeeeeeccccccCCC-c-eeeEEeeecccchhHHH-HH
Q 031381 115 PCKFIWPVIGELSAKHP-H-VTTYKIDIDQVGGIWRF-WM 151 (160)
Q Consensus 115 ~Ck~l~p~~~~La~~~~-~-v~~~kVDid~~~~l~~~-~v 151 (160)
.-..+...+.+++++++ + +.|+.+|.++.....++ ++
T Consensus 32 ~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl 71 (111)
T cd03073 32 GTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGL 71 (111)
T ss_pred HHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCC
Confidence 33567778999999998 5 99999999987766554 44
No 229
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=53.37 E-value=6.2 Score=23.61 Aligned_cols=32 Identities=6% Similarity=-0.035 Sum_probs=21.9
Q ss_pred eeeecccccceeeeeeccccccCCCceeeEEeeec
Q 031381 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141 (160)
Q Consensus 107 ~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid 141 (160)
.|+.++|+.|++..-.++...-.| ....++.+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~~---~~~~~~~~ 34 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLPY---ELVPVDLG 34 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCc---EEEEeCCC
Confidence 577889999998888777765544 34444443
No 230
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=52.83 E-value=6.6 Score=24.49 Aligned_cols=31 Identities=6% Similarity=0.085 Sum_probs=22.1
Q ss_pred eeeecccccceeeeeeccccccCCCceeeEEeee
Q 031381 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140 (160)
Q Consensus 107 ~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDi 140 (160)
.|+.+||+.|+++.-.+++..-.| ....+|.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~~---~~~~v~~ 33 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGIDV---PLVTVDL 33 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCCc---eEEEeec
Confidence 577889999999988877765554 3444554
No 231
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=52.13 E-value=5 Score=34.13 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=28.7
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCCc
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH 132 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~ 132 (160)
++...+-+.||+.||+.-+...|.++-....|+.
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~ 107 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS 107 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccc
Confidence 4456788899999999999999999888887764
No 232
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=51.12 E-value=3.4 Score=26.61 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=18.7
Q ss_pred EeeeecccccceeeeeeccccccCC
Q 031381 106 FYFTAAWCGPCKFIWPVIGELSAKH 130 (160)
Q Consensus 106 V~F~A~WC~~Ck~l~p~~~~La~~~ 130 (160)
..|+.++|+.|++..-.+++..-.|
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~gi~y 27 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHGIPY 27 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCCCce
Confidence 4577789999999987776665444
No 233
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=47.19 E-value=8 Score=27.85 Aligned_cols=63 Identities=10% Similarity=0.092 Sum_probs=41.0
Q ss_pred EEeecchhhhcccCCccCCCcceeEeeeecccccceeeeeeccccccCCCc-eeeEEeeecc--cchhHHH
Q 031381 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQ--VGGIWRF 149 (160)
Q Consensus 82 ~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~-v~~~kVDid~--~~~l~~~ 149 (160)
..|.+..+|.+++. ..+.|+|.|..+-- .-......+.+.++...| -+++.||+.+ ...+++.
T Consensus 4 e~i~d~KdfKKLLR----Tr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKK 69 (112)
T cd03067 4 EDISDHKDFKKLLR----TRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKK 69 (112)
T ss_pred ccccchHHHHHHHh----hcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHH
Confidence 36778889999984 34456665554432 223344477788888777 8899999976 3445544
No 234
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=46.35 E-value=4.6 Score=25.56 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=17.4
Q ss_pred eeeecccccceeeeeeccccccCC
Q 031381 107 YFTAAWCGPCKFIWPVIGELSAKH 130 (160)
Q Consensus 107 ~F~A~WC~~Ck~l~p~~~~La~~~ 130 (160)
.|+..+|+.|+++.-.+.+..-.|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~ 26 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPV 26 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCe
Confidence 467889999998877666554443
No 235
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=44.99 E-value=8.4 Score=24.15 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=22.2
Q ss_pred EeeeecccccceeeeeeccccccCCCceeeEEeeec
Q 031381 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141 (160)
Q Consensus 106 V~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid 141 (160)
..|+.++|+.|++..-.+++..-.| ....+|.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~---~~~~v~~~ 34 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV---EIIDVDPD 34 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc---EEEEcCCC
Confidence 3578889999999877776665544 33344544
No 236
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=44.96 E-value=13 Score=23.37 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=22.2
Q ss_pred eeeecccccceeeeeeccccccCCCceeeEEeeec
Q 031381 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141 (160)
Q Consensus 107 ~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid 141 (160)
.|+.++|+.|++..-.+++..-.| ....+|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~~---e~~~i~~~ 34 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGLEL---NLKEVNLM 34 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCCCC---EEEEecCc
Confidence 578899999998777776665544 44455553
No 237
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=29.25 E-value=22 Score=25.40 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=34.8
Q ss_pred CCCcceeEeeeecccccceeeeeeccccccCCC--ceeeEEeeecc
Q 031381 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (160)
Q Consensus 99 ~~~k~vvV~F~A~WC~~Ck~l~p~~~~La~~~~--~v~~~kVDid~ 142 (160)
-+||+++|.=.|+-||.-. -...+++|.++|. |+.++..-+.+
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 4678999999999999888 6678888999986 47777776643
No 238
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=28.84 E-value=16 Score=25.35 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=22.5
Q ss_pred eeecccccceeeeeeccccccCCCceeeEEe
Q 031381 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKI 138 (160)
Q Consensus 108 F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kV 138 (160)
||-.+|+-|......++++.. ...+.++.+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~ 31 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFVDI 31 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEEEC
Confidence 788999999999888888743 233666655
No 239
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=26.63 E-value=20 Score=28.34 Aligned_cols=26 Identities=27% Similarity=0.658 Sum_probs=19.5
Q ss_pred cccceeeeeeccccccCCCceeeEEeeec
Q 031381 113 CGPCKFIWPVIGELSAKHPHVTTYKIDID 141 (160)
Q Consensus 113 C~~Ck~l~p~~~~La~~~~~v~~~kVDid 141 (160)
||.|+++ +.++++-.|++.++..|-.
T Consensus 157 CGaC~ew---L~KIAe~np~f~v~mFd~t 182 (193)
T PF14421_consen 157 CGACKEW---LRKIAEANPDFRVYMFDDT 182 (193)
T ss_pred chHHHHH---HHHHHHhCCCeEEEEecCC
Confidence 8999887 5566667788888887744
No 240
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=25.63 E-value=30 Score=25.61 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=21.9
Q ss_pred Eeeeecc--cccceeeeeeccccccCCCceeeEEe
Q 031381 106 FYFTAAW--CGPCKFIWPVIGELSAKHPHVTTYKI 138 (160)
Q Consensus 106 V~F~A~W--C~~Ck~l~p~~~~La~~~~~v~~~kV 138 (160)
|+.|+.+ |.-|.. +++++.++||++.+..+
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~ 130 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPNIKVNVV 130 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCCcEEEEe
Confidence 5556655 888875 78899999998766444
No 241
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=25.57 E-value=41 Score=26.32 Aligned_cols=29 Identities=31% Similarity=0.781 Sum_probs=21.1
Q ss_pred eEEeecchhhhcccCCccCCCcceeEeeeecccc--cce
Q 031381 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCG--PCK 117 (160)
Q Consensus 81 v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~--~Ck 117 (160)
++.+.+.++|.+.+. +++ ...++||| .|-
T Consensus 128 ~~~~~~~~e~~~~~~----~~~----~v~~~wcg~~~~e 158 (202)
T cd00862 128 TRIVDTWEEFKEALN----EKG----IVLAPWCGEEECE 158 (202)
T ss_pred eEeeCCHHHHHHHHh----cCC----EEEEEecCCHHHH
Confidence 778888999999883 333 35579998 553
No 242
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.33 E-value=35 Score=30.68 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=24.3
Q ss_pred CCCcceEEeecchhhhcccCCccCCCcceeEeeeeccccc
Q 031381 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGP 115 (160)
Q Consensus 76 ~~~~~v~~v~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~~ 115 (160)
..+..++.+++.++|.+.|+ +++. .-||||+.
T Consensus 462 ~rds~~~~v~~~~eF~~aL~----~k~i----ilaPwcg~ 493 (551)
T KOG4163|consen 462 KRDSHIVKVNTWEEFVKALD----QKKI----ILAPWCGE 493 (551)
T ss_pred HhhhheeeeeeHHHHHHHhc----cCCE----EEccccCc
Confidence 45678889999999999983 4443 34899994
No 243
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=23.92 E-value=17 Score=23.48 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=18.0
Q ss_pred EeeeecccccceeeeeeccccccCC
Q 031381 106 FYFTAAWCGPCKFIWPVIGELSAKH 130 (160)
Q Consensus 106 V~F~A~WC~~Ck~l~p~~~~La~~~ 130 (160)
..|+.++|+.|++..-.+++..-.|
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~gi~y 27 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELELDV 27 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcCCcE
Confidence 4577789999998877666654433
No 244
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=23.38 E-value=22 Score=24.40 Aligned_cols=35 Identities=34% Similarity=0.501 Sum_probs=23.8
Q ss_pred eeeecc---cccc--eeeeeecccc---ccCCCc--eeeEEeeec
Q 031381 107 YFTAAW---CGPC--KFIWPVIGEL---SAKHPH--VTTYKIDID 141 (160)
Q Consensus 107 ~F~A~W---C~~C--k~l~p~~~~L---a~~~~~--v~~~kVDid 141 (160)
.||.-| |..| +....++.+| .++||+ |.++.+|-.
T Consensus 27 rywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 27 RFRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred ccHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 377777 6666 5555555554 567888 899999854
No 245
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=22.57 E-value=41 Score=20.74 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=21.1
Q ss_pred eeeecccccceeeeeeccccccCCCceeeEEeee
Q 031381 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140 (160)
Q Consensus 107 ~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDi 140 (160)
.|+.++|+.|+...-.+++..-.| ....+|.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~~---~~~~i~~ 33 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIPY---EWVEVDI 33 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCc---EEEEecC
Confidence 477788999998877776665554 3444554
No 246
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=22.56 E-value=41 Score=23.67 Aligned_cols=34 Identities=6% Similarity=0.141 Sum_probs=23.2
Q ss_pred EeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 106 V~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
..|+-+-|.-||+....+++- ++.+-.+|+-+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~~ 35 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKTP 35 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccCC
Confidence 468899999999987666654 3445556654433
No 247
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=21.81 E-value=23 Score=25.30 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=22.4
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~ 142 (160)
+..|+-+.|..||+....+++-. +.+-.+|+-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~g-----i~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAG-----HEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCcEEeehhc
Confidence 34688999999998877666553 4444455543
No 248
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=20.93 E-value=48 Score=23.46 Aligned_cols=34 Identities=3% Similarity=0.087 Sum_probs=24.1
Q ss_pred EeeeecccccceeeeeeccccccCCCceeeEEeeecccc
Q 031381 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVG 144 (160)
Q Consensus 106 V~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~ 144 (160)
..|+-+.|.-||+....+++- |+.+-.+|+-+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~p 35 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKNP 35 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCCC
Confidence 468899999999988777664 4555556665443
No 249
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=20.34 E-value=47 Score=22.01 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=22.6
Q ss_pred eEeeeecccccceeeeeeccccccCCCceeeEEeeecc
Q 031381 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (160)
Q Consensus 105 vV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~ 142 (160)
+..|+.+.|+.|+++.-.+++..-.| .+..+|.++
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~~---~~~~v~~~~ 53 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIPH---EVININLKD 53 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCCC---eEEEeCCCC
Confidence 34467788999998877776655444 444555543
No 250
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=20.32 E-value=53 Score=24.94 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=26.3
Q ss_pred ceeEeeeecccccceeeeeeccccccCCCceeeEEeeecccchhHH
Q 031381 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQVGGIWR 148 (160)
Q Consensus 103 ~vvV~F~A~WC~~Ck~l~p~~~~La~~~~~v~~~kVDid~~~~l~~ 148 (160)
.-++.|+.|.||-|+.-...++. .|+.+-.++.|+...+.+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~ 66 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKR 66 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHH
Confidence 35667999999999876555541 245555555555555544
Done!