BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031382
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CZT6|CMS1_MOUSE Protein CMSS1 OS=Mus musculus GN=Cmss1 PE=2 SV=1
Length = 276
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 99 VLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAG-GTPSRL 156
+LI+ SSA+R++EL++ L + + +KLF+KH+KV+EQV LL+ RV G GTP R+
Sbjct: 155 MLILCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVQEQVKLLEKRVIHLGVGTPGRI 213
>sp|Q2T9Y1|CC026_BOVIN Uncharacterized protein C3orf26 homolog OS=Bos taurus PE=2 SV=1
Length = 279
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 99 VLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAG-GTPSRL 156
+LII SA+R++EL++ + + + +KLF+KH+KV+EQV LL+ RV G GTP R+
Sbjct: 158 MLIICGSAIRAVELIRSMTAFKGDSKVMKLFAKHIKVQEQVKLLEKRVVHLGVGTPGRI 216
>sp|Q5FVR6|CMS1_RAT Protein CMSS1 OS=Rattus norvegicus GN=Cmss1 PE=2 SV=1
Length = 276
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 99 VLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNR-VNFAGGTPSRL 156
+LI+ SSA+R++EL++ L + + +KLF+KH+KV+EQV LL+ R ++ GTP R+
Sbjct: 155 MLILCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVQEQVKLLEKRAIHLGVGTPGRI 213
>sp|Q9BQ75|CMS1_HUMAN Protein CMSS1 OS=Homo sapiens GN=CMSS1 PE=1 SV=2
Length = 279
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 99 VLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAG-GTPSRL 156
+LII SSA+R++EL++ + + + +KLF+KH+KV+ QV LL+ RV G GTP R+
Sbjct: 158 MLIICSSAVRALELIRSMTAFRGDGKVIKLFAKHIKVQAQVKLLEKRVVHLGVGTPGRI 216
>sp|Q5XJK9|CMS1_DANRE Protein CMSS1 OS=Danio rerio GN=cmss1 PE=2 SV=1
Length = 291
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQV-SLLKNRVNFAGGTPS 154
S +LI+ SALR+I+L+K L + + +KLF+KH+KVEEQ+ SL K + A GTP
Sbjct: 167 SVVLLIVCGSALRTIDLIKQLVTFKGQAKVLKLFAKHIKVEEQIKSLSKGVTHIAVGTPG 226
Query: 155 RL 156
R+
Sbjct: 227 RI 228
>sp|Q68EV5|CMS1_XENLA Protein CMSS1 OS=Xenopus laevis GN=cmss1 PE=2 SV=1
Length = 277
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 99 VLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAG-GTPSRL 156
+L++ SSA R++EL+K + + + +KLF+KH+K+++Q++LL+ V G GTP R+
Sbjct: 156 LLVVCSSAHRTLELIKLINAFKADTKVMKLFAKHIKIKDQINLLEKNVTHIGIGTPGRI 214
>sp|O94465|CMS1_SCHPO Protein cms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cms1 PE=3 SV=1
Length = 277
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 95 GSPAVLIISSSALRSIELLKGLRSL-TKECHAVKLFSKHMKVEEQVSLLK-NRVNFAGGT 152
+P +L++ SALR+I++LK +SL K KLF KH+++EE ++ K N++ GT
Sbjct: 151 SNPEILVLCISALRAIDVLKPTKSLQNKNFKVAKLFGKHIRLEEHINYCKANKIGVGIGT 210
Query: 153 PSRL 156
R+
Sbjct: 211 TPRI 214
>sp|A8EV89|AROC_ARCB4 Chorismate synthase OS=Arcobacter butzleri (strain RM4018) GN=aroC
PE=3 SV=1
Length = 358
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 35 NGIQLSSLELESIKESSILELSRSLDQDSKSLGMHMKAAFGSLWKEVLTE--------GQ 86
NGIQ S+ + E++K+S I L +S++++ K+ + + + S+ L G+
Sbjct: 158 NGIQASNFDFENVKDSEIYALDKSVEEEQKNAILEARNSHNSVGGVALVNVKNCPIGLGE 217
Query: 87 LLEGKIDPGSPAVLIISSSALRSIELLKGL 116
L K+D A ++S +A++++E+ G+
Sbjct: 218 PLYFKLDS-QIANAMMSINAVKAVEIGDGI 246
>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis GN=ddx1 PE=2
SV=1
Length = 740
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 85 GQLLEGKIDPGSPAVLIISSSALRSIELLKGLRSLTKECHAVKL----FSKHMKVEEQVS 140
Q+ + K P +P LII S + + L ++ K + KL + +EQ++
Sbjct: 275 AQVSQAKNLPNAPKALIIEPSRELAEQTLNNVKQFKKYVDSPKLRELLIIGGVAAKEQLT 334
Query: 141 LLKNRVNFAGGTPSRL 156
LL+N V+ GTP R+
Sbjct: 335 LLENGVDIVVGTPGRI 350
>sp|Q8SR49|SPB4_ENCCU ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=SPB4 PE=3 SV=1
Length = 463
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 89 EGKIDPGSPAVLIISSSALR-SIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVN 147
+G+ PG AV+I + L I + GL + EC F M +EE +K +
Sbjct: 70 KGRGRPGVTAVVITPTRELALQIREVAGLFDVKCEC-----FIGGMSIEEDYKRMKEEFS 124
Query: 148 FAGGTPSRLV 157
A GTP RL+
Sbjct: 125 IAVGTPGRLL 134
>sp|A0LIS2|ISPD_SYNFM 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=ispD PE=3 SV=1
Length = 235
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 95 GSPAVLIISSSALRSIELLKGLRSLTKECHAV 126
G P+V +++ A R +L GLRSL EC V
Sbjct: 68 GHPSVTVVAGGAERQDSVLNGLRSLPDECGWV 99
>sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN=DDX1 PE=1 SV=2
Length = 740
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 85 GQLLEGKIDPGSPAVLIISSSALRSIELLKGLRSLTKECHAVKL----FSKHMKVEEQVS 140
Q+ + K P +P LI+ S + + L ++ K KL + +Q+S
Sbjct: 275 AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS 334
Query: 141 LLKNRVNFAGGTPSRL 156
+L+N V+ GTP RL
Sbjct: 335 VLENGVDIVVGTPGRL 350
>sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo abelii GN=DDX1 PE=2 SV=1
Length = 740
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 85 GQLLEGKIDPGSPAVLIISSSALRSIELLKGLRSLTKECHAVKL----FSKHMKVEEQVS 140
Q+ + K P +P LI+ S + + L ++ K KL + +Q+S
Sbjct: 275 AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS 334
Query: 141 LLKNRVNFAGGTPSRL 156
+L+N V+ GTP RL
Sbjct: 335 VLENGVDIVVGTPGRL 350
>sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca fascicularis GN=DDX1 PE=2
SV=1
Length = 740
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 85 GQLLEGKIDPGSPAVLIISSSALRSIELLKGLRSLTKECHAVKL----FSKHMKVEEQVS 140
Q+ + K P +P LI+ S + + L ++ K KL + +Q+S
Sbjct: 275 AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS 334
Query: 141 LLKNRVNFAGGTPSRL 156
+L+N V+ GTP RL
Sbjct: 335 VLENGVDIVVGTPGRL 350
>sp|Q39UT4|COAD_GEOMG Phosphopantetheine adenylyltransferase OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=coaD PE=3 SV=1
Length = 163
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 49 ESSILELSRSLDQDSKSLGMHMKAAFGSLWKEVLTEGQLLEGKIDPGSPAVL 100
E I +++RS+ QD ++L M FG L ++ E L G ID P ++
Sbjct: 100 EFQIAQMNRSISQDVETLFMMTSVPFGYLSSSIVKEVSSLNGPIDGLVPPLV 151
>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus laevis GN=ddx1 PE=2 SV=1
Length = 740
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 85 GQLLEGKIDPGSPAVLIISSSALRSIELLKGLRSLTKECHAVKL----FSKHMKVEEQVS 140
Q+ + K P +P LII S + + L ++ K KL + +EQ++
Sbjct: 275 AQVSQTKSLPNAPKALIIEPSRELAEQTLNNVKQFKKYVDNPKLRELLIIGGVAAKEQLT 334
Query: 141 LLKNRVNFAGGTPSRL 156
+L+N V+ GTP R+
Sbjct: 335 ILENGVDIVVGTPGRI 350
>sp|B0UWH5|ZAPB_HAES2 Cell division protein ZapB OS=Haemophilus somnus (strain 2336)
GN=zapB PE=3 SV=1
Length = 72
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 32 QSANGIQLSSLELESIKESSILELSRSLDQDSKSLGMHMKAAFGSLWKEVLTEGQLLEGK 91
Q+ IQL LE+E +KE + ELSR ++ +S H+K + W+E L L G+
Sbjct: 15 QAVETIQLLQLEIEELKEKN--ELSRQTNEQLRSENEHLKTEHHN-WQERLRS---LLGR 68
Query: 92 ID 93
ID
Sbjct: 69 ID 70
>sp|Q0I5W2|ZAPB_HAES1 Cell division protein ZapB OS=Haemophilus somnus (strain 129Pt)
GN=zapB PE=3 SV=1
Length = 72
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 32 QSANGIQLSSLELESIKESSILELSRSLDQDSKSLGMHMKAAFGSLWKEVLTEGQLLEGK 91
Q+ IQL LE+E +KE + ELSR ++ +S H+K + W+E L L G+
Sbjct: 15 QAVETIQLLQLEIEELKEKN--ELSRQTNEQLRSENEHLKTEHHN-WQERLRS---LLGR 68
Query: 92 ID 93
ID
Sbjct: 69 ID 70
>sp|Q74DS2|COAD_GEOSL Phosphopantetheine adenylyltransferase OS=Geobacter sulfurreducens
(strain ATCC 51573 / DSM 12127 / PCA) GN=coaD PE=3 SV=1
Length = 164
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 49 ESSILELSRSLDQDSKSLGMHMKAAFGSLWKEVLTEGQLLEGKIDPGSPAVL 100
E I +++RS+ QD ++L M +G L ++ E L G ID P ++
Sbjct: 100 EFQIAQMNRSISQDVETLFMMTSVPYGYLSSSIVKEVSSLNGPIDGLVPPLV 151
>sp|Q5NG54|SYFB_FRATT Phenylalanine--tRNA ligase beta subunit OS=Francisella tularensis
subsp. tularensis (strain SCHU S4 / Schu 4) GN=pheT PE=3
SV=1
Length = 790
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 15 SASASASEQLSFFLNEFQSANGI--QLSSLELESIKESSILELSRSLDQDSKSLGMHM 70
S S S +SF +++ A I + +L + +K+ SI ++ S D D KS+ ++M
Sbjct: 698 SKYPSVSRDISFLVDKSVLAGDIIKAIKALNINILKDVSIFDIYESQDSDRKSIALNM 755
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,638,590
Number of Sequences: 539616
Number of extensions: 1558183
Number of successful extensions: 4287
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4276
Number of HSP's gapped (non-prelim): 30
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)