Query 031382
Match_columns 160
No_of_seqs 166 out of 272
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:24:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 98.5 7.2E-08 2.5E-12 82.9 4.9 63 94-157 127-191 (434)
2 3fe2_A Probable ATP-dependent 98.5 8.8E-08 3E-12 75.7 4.7 63 94-157 100-164 (242)
3 3oiy_A Reverse gyrase helicase 98.5 4.1E-07 1.4E-11 76.5 7.9 113 24-157 7-129 (414)
4 3iuy_A Probable ATP-dependent 98.4 1.6E-07 5.6E-12 73.0 3.1 63 94-157 92-155 (228)
5 1wrb_A DJVLGB; RNA helicase, D 98.3 3.9E-07 1.3E-11 72.0 4.1 62 95-157 99-162 (253)
6 3ly5_A ATP-dependent RNA helic 98.3 3.9E-07 1.3E-11 73.5 4.1 62 95-157 125-188 (262)
7 2gxq_A Heat resistant RNA depe 98.3 6.1E-07 2.1E-11 68.1 4.4 63 94-157 70-132 (207)
8 3ber_A Probable ATP-dependent 98.3 7.3E-07 2.5E-11 71.4 4.8 62 95-157 110-173 (249)
9 1vec_A ATP-dependent RNA helic 98.2 1.1E-06 3.8E-11 66.7 4.9 62 94-156 69-133 (206)
10 2i4i_A ATP-dependent RNA helic 98.2 9.4E-07 3.2E-11 73.3 4.7 62 95-157 100-163 (417)
11 1q0u_A Bstdead; DEAD protein, 98.2 4.2E-07 1.4E-11 70.4 1.4 62 95-157 71-138 (219)
12 3fmo_B ATP-dependent RNA helic 98.1 4E-07 1.4E-11 75.4 1.0 61 93-157 159-222 (300)
13 1t6n_A Probable ATP-dependent 98.1 2.6E-06 9E-11 65.6 5.5 63 94-157 80-146 (220)
14 2oxc_A Probable ATP-dependent 98.1 2E-06 6.9E-11 67.3 4.8 61 95-157 91-154 (230)
15 3bor_A Human initiation factor 98.1 1.2E-06 4.2E-11 69.0 3.0 62 95-157 97-161 (237)
16 2j0s_A ATP-dependent RNA helic 98.0 4.4E-06 1.5E-10 69.4 4.8 63 94-157 103-167 (410)
17 2pl3_A Probable ATP-dependent 98.0 3.4E-06 1.2E-10 65.8 3.5 61 95-157 96-158 (236)
18 2fsf_A Preprotein translocase 97.9 2.5E-06 8.7E-11 81.5 2.4 58 96-156 115-174 (853)
19 3sqw_A ATP-dependent RNA helic 97.9 9.4E-06 3.2E-10 72.0 4.5 63 94-157 93-162 (579)
20 1qde_A EIF4A, translation init 97.8 8.6E-06 3E-10 62.7 3.3 61 95-157 81-143 (224)
21 4ddu_A Reverse gyrase; topoiso 97.8 1E-05 3.4E-10 78.6 4.0 62 95-157 120-186 (1104)
22 3i5x_A ATP-dependent RNA helic 97.8 1.6E-05 5.4E-10 69.5 4.2 62 95-157 145-213 (563)
23 4a2p_A RIG-I, retinoic acid in 97.8 8.4E-06 2.9E-10 69.9 2.4 62 95-157 54-117 (556)
24 3dkp_A Probable ATP-dependent 97.8 2.4E-06 8E-11 67.1 -1.0 63 94-157 96-161 (245)
25 1tf5_A Preprotein translocase 97.7 7E-06 2.4E-10 78.5 1.6 58 96-156 124-183 (844)
26 1gku_B Reverse gyrase, TOP-RG; 97.7 4.5E-05 1.5E-09 73.5 6.6 61 95-157 98-167 (1054)
27 3tbk_A RIG-I helicase domain; 97.7 7.9E-06 2.7E-10 69.7 1.1 62 95-157 51-114 (555)
28 1s2m_A Putative ATP-dependent 97.7 4E-05 1.4E-09 63.3 4.7 61 95-156 88-150 (400)
29 1xti_A Probable ATP-dependent 97.7 5.4E-05 1.8E-09 62.0 5.4 63 94-157 74-140 (391)
30 3eiq_A Eukaryotic initiation f 97.6 5E-05 1.7E-09 62.7 4.8 62 95-157 107-171 (414)
31 1fuu_A Yeast initiation factor 97.5 8.7E-05 3E-09 60.6 4.5 62 94-157 87-150 (394)
32 1hv8_A Putative ATP-dependent 97.5 0.00011 3.7E-09 59.2 4.8 61 95-157 73-135 (367)
33 4a2q_A RIG-I, retinoic acid in 97.4 5.6E-05 1.9E-09 69.8 3.0 61 96-157 296-358 (797)
34 1nkt_A Preprotein translocase 97.4 0.00011 3.6E-09 71.0 4.1 57 97-156 153-211 (922)
35 2z0m_A 337AA long hypothetical 97.3 0.00017 5.9E-09 57.4 4.6 60 96-157 56-117 (337)
36 2ykg_A Probable ATP-dependent 97.3 7.3E-05 2.5E-09 66.8 1.6 61 96-157 61-123 (696)
37 2ipc_A Preprotein translocase 97.2 0.00012 4E-09 71.0 2.9 57 97-156 121-179 (997)
38 3b6e_A Interferon-induced heli 97.1 7.1E-05 2.4E-09 56.4 0.0 62 95-157 81-144 (216)
39 1gm5_A RECG; helicase, replica 97.1 0.00055 1.9E-08 64.5 5.8 60 96-156 417-482 (780)
40 4a2w_A RIG-I, retinoic acid in 97.1 0.00013 4.4E-09 69.3 1.4 61 96-157 296-358 (936)
41 3fmp_B ATP-dependent RNA helic 97.1 0.00015 5.1E-09 62.2 1.7 60 93-156 159-221 (479)
42 3fht_A ATP-dependent RNA helic 96.9 0.00026 8.8E-09 58.2 1.2 60 94-157 93-155 (412)
43 4gl2_A Interferon-induced heli 96.9 9.7E-05 3.3E-09 66.1 -1.6 61 96-157 56-118 (699)
44 2oca_A DAR protein, ATP-depend 96.5 0.0009 3.1E-08 57.7 2.2 59 95-157 156-216 (510)
45 3pey_A ATP-dependent RNA helic 96.5 0.0013 4.5E-08 53.3 2.8 59 94-157 73-133 (395)
46 1wp9_A ATP-dependent RNA helic 96.3 0.0034 1.2E-07 51.4 4.3 61 95-157 51-113 (494)
47 3o8b_A HCV NS3 protease/helica 96.0 0.002 7E-08 60.0 1.8 52 97-157 258-309 (666)
48 1rif_A DAR protein, DNA helica 95.9 0.0031 1E-07 50.6 2.1 58 96-157 157-216 (282)
49 2v1x_A ATP-dependent DNA helic 95.8 0.0088 3E-07 54.1 4.8 58 97-157 85-148 (591)
50 3fho_A ATP-dependent RNA helic 95.6 0.0045 1.6E-07 54.2 2.1 58 95-157 188-247 (508)
51 2eyq_A TRCF, transcription-rep 95.4 0.01 3.6E-07 57.8 4.3 60 96-156 652-717 (1151)
52 3llm_A ATP-dependent RNA helic 95.4 0.00087 3E-08 52.7 -2.9 60 95-157 108-167 (235)
53 3l9o_A ATP-dependent RNA helic 95.2 0.0085 2.9E-07 58.3 2.7 52 96-157 227-278 (1108)
54 2va8_A SSO2462, SKI2-type heli 94.8 0.0083 2.9E-07 54.3 1.5 57 97-157 76-133 (715)
55 2p6r_A Afuhel308 helicase; pro 94.5 0.0056 1.9E-07 55.5 -0.5 58 96-157 68-126 (702)
56 2fwr_A DNA repair protein RAD2 94.4 0.021 7.3E-07 48.5 3.1 50 96-157 133-183 (472)
57 1oyw_A RECQ helicase, ATP-depe 94.4 0.033 1.1E-06 49.2 4.3 58 97-157 66-127 (523)
58 4a4z_A Antiviral helicase SKI2 94.4 0.015 5.2E-07 55.9 2.3 53 96-156 82-134 (997)
59 3crv_A XPD/RAD3 related DNA he 94.4 0.033 1.1E-06 49.4 4.3 25 96-120 47-71 (551)
60 2zj8_A DNA helicase, putative 94.3 0.014 4.6E-07 53.1 1.5 57 97-157 69-126 (720)
61 3h1t_A Type I site-specific re 94.2 0.011 3.8E-07 52.2 0.8 52 95-157 234-286 (590)
62 2w00_A HSDR, R.ECOR124I; ATP-b 94.1 0.029 9.8E-07 54.5 3.5 58 95-157 329-387 (1038)
63 1yks_A Genome polyprotein [con 93.0 0.046 1.6E-06 47.2 2.6 24 96-119 37-60 (440)
64 4f92_B U5 small nuclear ribonu 92.8 0.073 2.5E-06 54.2 4.1 56 97-156 973-1031(1724)
65 2xgj_A ATP-dependent RNA helic 92.5 0.03 1E-06 54.0 0.8 51 96-156 129-179 (1010)
66 2fz4_A DNA repair protein RAD2 91.1 0.13 4.6E-06 40.5 3.0 50 96-157 133-183 (237)
67 2wv9_A Flavivirin protease NS2 89.9 0.18 6.1E-06 46.5 3.2 25 95-119 269-293 (673)
68 2hjv_A ATP-dependent RNA helic 89.3 0.79 2.7E-05 33.5 5.8 54 97-153 36-93 (163)
69 1fuk_A Eukaryotic initiation f 89.1 0.73 2.5E-05 33.7 5.5 55 96-153 30-88 (165)
70 2rb4_A ATP-dependent RNA helic 88.0 1.4 4.9E-05 32.4 6.5 55 96-153 34-92 (175)
71 3rc3_A ATP-dependent RNA helic 87.8 0.24 8.1E-06 45.9 2.5 44 97-156 180-223 (677)
72 4f92_B U5 small nuclear ribonu 87.8 0.26 8.7E-06 50.2 2.9 58 95-156 133-192 (1724)
73 2p6n_A ATP-dependent RNA helic 87.7 1.2 4.2E-05 33.9 6.1 54 97-153 55-112 (191)
74 3eaq_A Heat resistant RNA depe 87.0 1.1 3.7E-05 34.5 5.5 54 97-153 32-89 (212)
75 1t5i_A C_terminal domain of A 86.3 1.5 5.2E-05 32.5 5.9 54 97-153 32-89 (172)
76 2z83_A Helicase/nucleoside tri 84.5 0.2 6.7E-06 43.4 0.1 24 96-119 50-73 (459)
77 2xau_A PRE-mRNA-splicing facto 84.5 0.14 4.8E-06 47.8 -0.9 58 96-157 140-197 (773)
78 3fht_A ATP-dependent RNA helic 83.8 2.2 7.6E-05 34.5 6.1 54 97-153 267-324 (412)
79 2jlq_A Serine protease subunit 83.7 0.57 1.9E-05 40.3 2.7 24 96-119 48-71 (451)
80 3i32_A Heat resistant RNA depe 80.8 2 6.9E-05 35.5 4.9 54 97-153 29-86 (300)
81 2i4i_A ATP-dependent RNA helic 80.8 3.4 0.00012 33.6 6.2 56 95-153 275-334 (417)
82 3pey_A ATP-dependent RNA helic 80.7 3.2 0.00011 33.1 5.9 55 96-153 243-301 (395)
83 1hv8_A Putative ATP-dependent 80.5 3.3 0.00011 32.6 5.9 56 95-153 237-296 (367)
84 2jgn_A DBX, DDX3, ATP-dependen 80.4 1.4 4.9E-05 33.2 3.6 55 96-153 46-104 (185)
85 1s2m_A Putative ATP-dependent 79.9 3.7 0.00013 33.2 6.1 55 96-153 258-316 (400)
86 1xti_A Probable ATP-dependent 77.7 4.9 0.00017 32.2 6.2 55 96-153 250-308 (391)
87 1z63_A Helicase of the SNF2/RA 77.5 0.9 3.1E-05 38.7 1.8 55 96-157 86-140 (500)
88 2v1x_A ATP-dependent DNA helic 77.4 3.9 0.00013 36.7 6.0 56 95-153 266-325 (591)
89 2v6i_A RNA helicase; membrane, 77.0 2.6 8.8E-05 36.0 4.5 53 97-153 172-225 (431)
90 3i5x_A ATP-dependent RNA helic 76.7 4.5 0.00015 34.9 6.0 58 95-153 338-400 (563)
91 1suy_C CIIABD, circadian clock 76.7 0.49 1.7E-05 27.7 -0.0 14 146-159 3-16 (34)
92 3sqw_A ATP-dependent RNA helic 76.5 4.8 0.00016 35.3 6.2 57 96-153 288-349 (579)
93 2j0s_A ATP-dependent RNA helic 75.7 4.9 0.00017 32.7 5.7 54 97-153 277-334 (410)
94 1oyw_A RECQ helicase, ATP-depe 73.8 4.7 0.00016 35.4 5.5 55 96-153 236-294 (523)
95 1yks_A Genome polyprotein [con 72.0 3.1 0.00011 35.6 3.8 53 97-153 178-231 (440)
96 3eiq_A Eukaryotic initiation f 68.7 4.6 0.00016 32.7 3.9 54 97-153 281-338 (414)
97 2db3_A ATP-dependent RNA helic 67.4 8.7 0.0003 32.4 5.6 53 98-153 302-358 (434)
98 2yjt_D ATP-dependent RNA helic 70.3 1.2 4E-05 32.9 0.0 55 96-153 30-88 (170)
99 2wv9_A Flavivirin protease NS2 66.1 5.4 0.00019 36.7 4.3 53 96-152 410-463 (673)
100 1c4o_A DNA nucleotide excision 62.3 12 0.0004 34.1 5.7 53 97-152 440-496 (664)
101 2jlq_A Serine protease subunit 61.8 8 0.00027 33.0 4.3 52 97-152 189-241 (451)
102 2d7d_A Uvrabc system protein B 61.7 14 0.00049 33.5 6.2 54 97-153 446-503 (661)
103 2whx_A Serine protease/ntpase/ 61.2 4.9 0.00017 36.4 3.0 25 95-119 214-238 (618)
104 2whx_A Serine protease/ntpase/ 60.2 8.8 0.0003 34.7 4.5 53 97-153 356-409 (618)
105 3rc3_A ATP-dependent RNA helic 59.0 15 0.0005 33.9 5.8 54 97-153 321-380 (677)
106 2va8_A SSO2462, SKI2-type heli 58.0 16 0.00054 32.8 5.7 57 96-153 252-346 (715)
107 2z0m_A 337AA long hypothetical 57.6 12 0.00041 29.1 4.4 52 95-153 219-274 (337)
108 1wp9_A ATP-dependent RNA helic 55.7 12 0.00039 30.2 4.1 56 95-152 360-426 (494)
109 2v6i_A RNA helicase; membrane, 55.3 7.4 0.00025 33.1 3.0 24 96-119 31-54 (431)
110 3oiy_A Reverse gyrase helicase 55.2 17 0.00059 29.7 5.1 50 97-152 253-304 (414)
111 4gl2_A Interferon-induced heli 54.9 10 0.00034 33.6 3.9 58 96-153 400-472 (699)
112 4a15_A XPD helicase, ATP-depen 54.3 6.4 0.00022 35.6 2.5 35 97-131 52-88 (620)
113 2eyq_A TRCF, transcription-rep 53.8 14 0.00048 36.0 5.0 57 96-153 812-872 (1151)
114 2xau_A PRE-mRNA-splicing facto 53.5 9.7 0.00033 35.4 3.7 57 96-153 303-377 (773)
115 3fmp_B ATP-dependent RNA helic 51.6 3.1 0.00011 35.2 0.0 55 96-153 333-391 (479)
116 1fuu_A Yeast initiation factor 50.6 3.3 0.00011 33.2 0.0 55 96-153 259-317 (394)
117 2zj8_A DNA helicase, putative 48.9 28 0.00097 31.3 5.9 56 97-153 238-328 (720)
118 1c4o_A DNA nucleotide excision 46.2 15 0.00051 33.4 3.6 23 99-121 56-78 (664)
119 2p6r_A Afuhel308 helicase; pro 46.1 33 0.0011 30.7 5.8 56 97-153 243-330 (702)
120 3mwy_W Chromo domain-containin 44.2 26 0.00088 32.3 4.9 59 97-157 287-357 (800)
121 3o8b_A HCV NS3 protease/helica 44.2 12 0.00042 34.6 2.8 53 95-153 395-447 (666)
122 2z83_A Helicase/nucleoside tri 43.7 6.5 0.00022 33.7 0.8 53 97-153 191-244 (459)
123 2vl7_A XPD; helicase, unknown 43.5 15 0.00051 32.3 3.1 24 96-119 51-74 (540)
124 3fho_A ATP-dependent RNA helic 34.8 5.4 0.00019 34.5 -1.1 55 96-153 357-415 (508)
125 2ykg_A Probable ATP-dependent 34.4 24 0.00083 31.0 3.0 57 96-152 398-468 (696)
126 3h1t_A Type I site-specific re 33.7 47 0.0016 28.8 4.7 24 96-119 439-462 (590)
127 1gku_B Reverse gyrase, TOP-RG; 30.3 39 0.0013 32.4 3.9 51 96-152 275-326 (1054)
128 1z3i_X Similar to RAD54-like; 27.9 51 0.0017 29.5 4.0 60 96-156 114-181 (644)
129 3tbk_A RIG-I helicase domain; 26.4 72 0.0025 26.5 4.5 59 95-153 388-460 (555)
130 2oba_A Probable 6-pyruvoyl tet 24.7 36 0.0012 25.2 2.0 30 16-46 98-127 (138)
131 3l9o_A ATP-dependent RNA helic 24.7 80 0.0027 30.7 4.9 25 95-119 440-464 (1108)
132 4a2p_A RIG-I, retinoic acid in 24.5 72 0.0025 26.6 4.1 59 95-153 389-461 (556)
133 3ntd_A FAD-dependent pyridine 23.8 2.4E+02 0.0081 24.0 7.4 24 96-119 524-547 (565)
134 1dih_A Dihydrodipicolinate red 23.1 37 0.0013 27.4 2.0 13 142-154 93-105 (273)
135 3qy9_A DHPR, dihydrodipicolina 22.3 36 0.0012 27.3 1.7 13 142-154 73-85 (243)
136 3czc_A RMPB; alpha/beta sandwi 22.3 1E+02 0.0036 21.2 4.0 55 97-154 19-76 (110)
137 2oca_A DAR protein, ATP-depend 22.2 1.5E+02 0.005 24.9 5.6 53 97-152 348-404 (510)
138 1p9l_A Dihydrodipicolinate red 22.1 62 0.0021 25.9 3.1 18 97-114 46-63 (245)
139 2amj_A Modulator of drug activ 21.9 1.1E+02 0.0039 23.0 4.5 61 93-154 9-80 (204)
140 3dmq_A RNA polymerase-associat 21.0 29 0.001 32.9 1.1 61 93-156 197-259 (968)
141 2jtq_A Phage shock protein E; 20.5 1.1E+02 0.0037 19.3 3.6 24 96-119 41-64 (85)
142 4a4z_A Antiviral helicase SKI2 20.5 1E+02 0.0035 29.5 4.7 22 97-118 337-358 (997)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.51 E-value=7.2e-08 Score=82.90 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+.|++|||+||+++|.|+.+.++.|.. ..++.-++++ ....+|.+.++.+++|+||||||+.
T Consensus 127 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~l~~~~~Ivv~Tp~~l~ 191 (434)
T 2db3_A 127 LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGG-TSFRHQNECITRGCHVVIATPGRLL 191 (434)
T ss_dssp TTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTT-SCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred cCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECC-CCHHHHHHHhhcCCCEEEEChHHHH
Confidence 4579999999999999999999999853 3566777776 6899999999999999999999984
No 2
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.50 E-value=8.8e-08 Score=75.67 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+.|++|||+|++++|.|+.+.++.+.+ +.++..++++ ....++.+.++.+++|+||||||+.
T Consensus 100 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~I~v~Tp~~l~ 164 (242)
T 3fe2_A 100 GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGG-APKGPQIRDLERGVEICIATPGRLI 164 (242)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTT-SCHHHHHHHHHHCCSEEEECHHHHH
T ss_pred CCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECC-CChHHHHHHhcCCCCEEEECHHHHH
Confidence 4678999999999999999999999843 3456667766 5899999999999999999999974
No 3
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.45 E-value=4.1e-07 Score=76.49 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhCCCCCcccccccc-----ccchhcccccccccccchhhhhhhhhhhhHHHHhhhhhhccCCCCCCCCe
Q 031382 24 LSFFLNEFQSANGIQLSSLELESIK-----ESSILELSRSLDQDSKSLGMHMKAAFGSLWKEVLTEGQLLEGKIDPGSPA 98 (160)
Q Consensus 24 a~~l~~~~~~~~~~~LS~lELedl~-----es~fl~~~~~~~~dt~~l~~~~~~~~~p~~~~~~~~~~l~k~~~~~~sP~ 98 (160)
.+-+.+.+++.++.+++++..+-++ ++.++.. -++-|+.+ ....|.. ... ...++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a-------pTGsGKT~-~~l~~~~-~~~-----------~~~~~ 66 (414)
T 3oiy_A 7 YEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVA-------PTGVGKTT-FGMMTAL-WLA-----------RKGKK 66 (414)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCS-------CSSSSHHH-HHHHHHH-HHH-----------TTTCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEe-------CCCCCHHH-HHHHHHH-HHh-----------cCCCE
Confidence 3344455555566678877766542 1222221 25667766 3333322 111 24589
Q ss_pred EEEEcCchhhHHHHHHHHhhhhc-ccchhhhhccCCCH---HHHHHHHhcC-CcEEEeCCCcee
Q 031382 99 VLIISSSALRSIELLKGLRSLTK-ECHAVKLFSKHMKV---EEQVSLLKNR-VNFAGGTPSRLV 157 (160)
Q Consensus 99 ~lIl~~Sa~ra~dv~r~l~~~~k-~~~v~KLFaKh~Ki---~eQi~~Lk~~-v~I~VGTPgRl~ 157 (160)
+|||+|++++|.|+.+.++.|.+ +.++..+.++ ... ++|.+.|..+ ++|+||||||+.
T Consensus 67 ~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~ 129 (414)
T 3oiy_A 67 SALVFPTVTLVKQTLERLQKLADEKVKIFGFYSS-MKKEEKEKFEKSFEEDDYHILVFSTQFVS 129 (414)
T ss_dssp EEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTT-SCHHHHHHHHHHHHHTCCSEEEEEHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHHccCCceEEEEECC-CChhhHHHHHHHhhcCCCCEEEECHHHHH
Confidence 99999999999999999999854 5567777776 577 7788888866 999999999983
No 4
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.36 E-value=1.6e-07 Score=72.97 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=48.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhh-cccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLT-KECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~-k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
...+++|||+|++++|.|+.+.++.+. .+.++..++++ ....++.+.+.++.+|+||||||+.
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiv~Tp~~l~ 155 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGG-RNRNGQIEDISKGVDIIIATPGRLN 155 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC-------CHHHHHSCCSEEEECHHHHH
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECC-CChHHHHHHhcCCCCEEEECHHHHH
Confidence 367899999999999999999999983 45566777776 4788888889999999999999974
No 5
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.31 E-value=3.9e-07 Score=72.03 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=52.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..|++|||+|++++|.|+.+.++.+.. ..++.-++++ ....++.+.+..+.+|+||||||+.
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~Ivv~Tp~~l~ 162 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGG-ADTHSQIREVQMGCHLLVATPGRLV 162 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSS-SCSHHHHHHHSSCCSEEEECHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECC-CCHHHHHHHhCCCCCEEEECHHHHH
Confidence 458999999999999999999999843 3445566666 5788888999889999999999974
No 6
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.30 E-value=3.9e-07 Score=73.49 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=51.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
+.+++|||+|++++|.|+.+.++.+.+ ...+..++++ ....++...++.+++|+||||||+.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~Iiv~Tp~~l~ 188 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGG-SNRSAEAQKLGNGINIIVATPGRLL 188 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSS-SCHHHHHHHHHHCCSEEEECHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECC-CCHHHHHHHhcCCCCEEEEcHHHHH
Confidence 568899999999999999999999843 2345556665 5888999999989999999999974
No 7
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.27 E-value=6.1e-07 Score=68.07 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+.+++||++|++++|.|+.+.++.+.+..++..++++ ....++.+.+..+.+|+||||+|+.
T Consensus 70 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~T~~~l~ 132 (207)
T 2gxq_A 70 GRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGG-TGYGKQKEALLRGADAVVATPGRAL 132 (207)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSS-SCSHHHHHHHHHCCSEEEECHHHHH
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECC-CChHHHHHHhhCCCCEEEECHHHHH
Confidence 45789999999999999999999999666667777776 4778888888889999999999863
No 8
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.26 E-value=7.3e-07 Score=71.38 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=52.6
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
+.+++|||+|++++|.|+.+.++.+.+ +.++..++++ ....+|...+..+.+|+||||||+.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~I~v~Tp~~l~ 173 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGG-IDSMSQSLALAKKPHIIIATPGRLI 173 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTT-SCHHHHHHHHHTCCSEEEECHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECC-CChHHHHHHhcCCCCEEEECHHHHH
Confidence 468899999999999999999999844 4556667776 5788888888889999999999974
No 9
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.22 E-value=1.1e-06 Score=66.71 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=52.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhc---ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTK---ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k---~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
.+.+++||++|++++|.|+.+.++.+.+ +.++.-+.++ ....++...+..+.+|+||||+|+
T Consensus 69 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~v~T~~~l 133 (206)
T 1vec_A 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGG-TNLRDDIMRLDDTVHVVIATPGRI 133 (206)
T ss_dssp SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSS-SCHHHHHHHTTSCCSEEEECHHHH
T ss_pred CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCC-ccHHHHHHhcCCCCCEEEeCHHHH
Confidence 3568999999999999999999998843 4456666665 588999999888999999999997
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.22 E-value=9.4e-07 Score=73.32 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=53.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..|++|||+|++++|.|+.+.++.+.. +.++.-++++ ....+|.+.+..+.+|+||||||+.
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~I~v~Tp~~l~ 163 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGG-ADIGQQIRDLERGCHLLVATPGRLV 163 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSS-SCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECC-CCHHHHHHHhhCCCCEEEEChHHHH
Confidence 458999999999999999999999843 3456667766 6899999999999999999999974
No 11
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.16 E-value=4.2e-07 Score=70.38 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=49.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc------ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK------ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k------~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
+.+++|||+|++++|.|+.+.++.+.+ ...+..++++ ....++.+.++.+.+|+||||||+.
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~Iiv~Tp~~l~ 138 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGG-TDKQKALEKLNVQPHIVIGTPGRIN 138 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCC-SHHHHTTCCCSSCCSEEEECHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCC-CCHHHHHHHcCCCCCEEEeCHHHHH
Confidence 468999999999999999999998854 3445556665 4667777777778999999999874
No 12
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.15 E-value=4e-07 Score=75.36 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=44.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhhhhc---ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 93 DPGSPAVLIISSSALRSIELLKGLRSLTK---ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 93 ~~~sP~~lIl~~Sa~ra~dv~r~l~~~~k---~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..+.|++|||+||+++|.|+.+.++.+.+ ...+.-+++. ....++. +.+.+|+|||||||.
T Consensus 159 ~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~---~~~~~IlV~TP~~l~ 222 (300)
T 3fmo_B 159 ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-NKLERGQ---KISEQIVIGTPGTVL 222 (300)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTT-CCCCTTC---CCCCSEEEECHHHHH
T ss_pred cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCC-ccHhhhh---cCCCCEEEECHHHHH
Confidence 45678999999999999999999998853 2334444443 2333322 457899999999973
No 13
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.14 E-value=2.6e-06 Score=65.61 Aligned_cols=63 Identities=19% Similarity=0.403 Sum_probs=52.0
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhc---ccchhhhhccCCCHHHHHHHHhc-CCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTK---ECHAVKLFSKHMKVEEQVSLLKN-RVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k---~~~v~KLFaKh~Ki~eQi~~Lk~-~v~I~VGTPgRl~ 157 (160)
.+.+++|||+|++++|.|+.+.++.+.+ +.++..+.++ ....++.+.+++ ..+|+|+||+|+.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~~~~~i~v~T~~~l~ 146 (220)
T 1t6n_A 80 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG-LSIKKDEEVLKKNCPHIVVGTPGRIL 146 (220)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCC-SCHHHHHHHHHHSCCSEEEECHHHHH
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCC-CChHHHHHHHhcCCCCEEEeCHHHHH
Confidence 3568999999999999999999999853 4566666665 688899988875 5799999999874
No 14
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.14 E-value=2e-06 Score=67.29 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=50.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc---ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK---ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k---~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..+++|||+|++++|.|+.+.++.+.+ +.++..+.++ ....++.+.++ +.+|+||||||+.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-~~~Iiv~Tp~~l~ 154 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGG-TPLSQDKTRLK-KCHIAVGSPGRIK 154 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTT-SCHHHHHHHTT-SCSEEEECHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCC-CCHHHHHHhcc-CCCEEEECHHHHH
Confidence 468999999999999999999999843 4556666665 57888888775 7999999999973
No 15
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.10 E-value=1.2e-06 Score=68.98 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=40.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcC-CcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNR-VNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~-v~I~VGTPgRl~ 157 (160)
..+++|||+|++++|.|+.+.++.+.+ +..+..++++ ....++.+.+..+ .+|+||||||+.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~Ilv~Tp~~l~ 161 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGG-TNVRNEMQKLQAEAPHIVVGTPGRVF 161 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC--------------CCCSEEEECHHHHH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECC-CchHHHHHHHhcCCCCEEEECHHHHH
Confidence 468999999999999999999999843 3445555665 4778888888755 899999999964
No 16
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.02 E-value=4.4e-06 Score=69.43 Aligned_cols=63 Identities=21% Similarity=0.330 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
...+++|||+|++++|.|+.+.++.+.. +..+..+.++ ....++++.++.+.+|+||||||+.
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~ivv~Tp~~l~ 167 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGG-TNVGEDIRKLDYGQHVVAGTPGRVF 167 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTT-SCHHHHHHHHHHCCSEEEECHHHHH
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECC-CCHHHHHHHhhcCCCEEEcCHHHHH
Confidence 3568999999999999999999999843 2345555665 6899999999999999999999974
No 17
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.99 E-value=3.4e-06 Score=65.81 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=47.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcc--cchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKE--CHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~--~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..+++|||+|++++|.|+.+.++.+.+. .++..++++ ....++.+.++ +.+|+||||||+.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGG-KDLKHEAERIN-NINILVCTPGRLL 158 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC---CHHHHHHHT-TCSEEEECHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECC-CCHHHHHHhCC-CCCEEEECHHHHH
Confidence 4689999999999999999999998533 455666665 46677777664 8999999999974
No 18
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.95 E-value=2.5e-06 Score=81.55 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=48.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
.++++|||||+++|.|+++.++.|.+ +.+|.-++++ +.. |.+.+..+++|+||||||+
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG-~~~--~~r~~~~~~dIvvgTpgrl 174 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG-MPA--PAKREAYAADITYGTNNEY 174 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT-CCH--HHHHHHHHSSEEEEEHHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC-CCH--HHHHHhcCCCEEEECCchh
Confidence 36899999999999999999999843 4667778876 565 4566667899999999998
No 19
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.87 E-value=9.4e-06 Score=72.01 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=51.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhc------ccchhhhhccCCCHHHHHHHHh-cCCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTK------ECHAVKLFSKHMKVEEQVSLLK-NRVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k------~~~v~KLFaKh~Ki~eQi~~Lk-~~v~I~VGTPgRl~ 157 (160)
...|++|||+|++++|.|+.+.++.+.+ ...+.-++++ ....+|.+.+. .+.+|+||||||++
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~l~~~~~~IlV~Tp~~l~ 162 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGG-TDFRAAMNKMNKLRPNIVIATPGRLI 162 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTT-SCHHHHHHHHHHHCCSEEEECHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECC-ccHHHHHHHHhcCCCCEEEECHHHHH
Confidence 3568999999999999999999998732 2334556665 58899999986 58999999999984
No 20
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.84 E-value=8.6e-06 Score=62.68 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=42.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
+.+++||++|++++|.|+.+.++.+.. +.++..+.++ ....++.+.++. .+|+||||+|+.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~-~~iiv~Tp~~l~ 143 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG-TSFVEDAEGLRD-AQIVVGTPGRVF 143 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-----------CTT-CSEEEECHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCC-cchHHHHhcCCC-CCEEEECHHHHH
Confidence 568999999999999999999999843 4455666665 467777777765 999999999963
No 21
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.81 E-value=1e-05 Score=78.63 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=52.4
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhh-cccchhhhhccCCCH---HHHHHHHhcC-CcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLT-KECHAVKLFSKHMKV---EEQVSLLKNR-VNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~-k~~~v~KLFaKh~Ki---~eQi~~Lk~~-v~I~VGTPgRl~ 157 (160)
..+++|||+|++++|.|+.+.++.|. .+.+++.+.++ ... ++|.+.|+.+ ++|+|||||||.
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg-~~~~er~~~~~~l~~g~~~IlV~Tp~rL~ 186 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSS-MKKEEKEKFEKSFEEDDYHILVFSTQFVS 186 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTT-CCTTHHHHHHHHHHTSCCSEEEEEHHHHH
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCC-CCHHHHHHHHHHHhCCCCCEEEECHHHHH
Confidence 46899999999999999999999985 34567777776 566 8888999876 999999999983
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.77 E-value=1.6e-05 Score=69.54 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=49.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc------ccchhhhhccCCCHHHHHHHHh-cCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK------ECHAVKLFSKHMKVEEQVSLLK-NRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k------~~~v~KLFaKh~Ki~eQi~~Lk-~~v~I~VGTPgRl~ 157 (160)
..+++|||+|++++|.|+.+.++.+.+ ...+.-+++. ....+|.+.+. .+++|+||||||+.
T Consensus 145 ~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~Iiv~Tp~~l~ 213 (563)
T 3i5x_A 145 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGG-TDFRAAMNKMNKLRPNIVIATPGRLI 213 (563)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTT-SCHHHHHHHHHHHCCSEEEECHHHHH
T ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECC-cCHHHHHHHHhcCCCCEEEECcHHHH
Confidence 468999999999999999999998632 1234445555 58888988885 68999999999984
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.77 E-value=8.4e-06 Score=69.89 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=48.9
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
+.+.+|||+|+++++.|+.+.++.+.+ +.++..+.+. ....++.+.+..+.+|+|+||||+.
T Consensus 54 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~v~T~~~l~ 117 (556)
T 4a2p_A 54 RKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGE-NFSNVSVEKVIEDSDIIVVTPQILV 117 (556)
T ss_dssp CCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC------CHHHHHHHCSEEEECHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCC-CCcchhHHHhhCCCCEEEECHHHHH
Confidence 368899999999999999999999844 5667777776 4777788888888999999999975
No 24
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.76 E-value=2.4e-06 Score=67.06 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=41.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhcc--cchhhhhccCCCHHHHH-HHHhcCCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTKE--CHAVKLFSKHMKVEEQV-SLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k~--~~v~KLFaKh~Ki~eQi-~~Lk~~v~I~VGTPgRl~ 157 (160)
...+++|||+|++++|.|+.+.++.+.+. .++.-+.+.. ...++. ..+..+++|+||||||+.
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~I~v~Tp~~l~ 161 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAA-VAAKKFGPKSSKKFDILVTTPNRLI 161 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHH-HHHTTTSTTSCCCCCEEEECHHHHH
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCc-cHHHHhhhhhcCCCCEEEECHHHHH
Confidence 35689999999999999999999998432 2222222221 111111 112357899999999984
No 25
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.74 E-value=7e-06 Score=78.45 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=46.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
.++++|||||+++|.|+++.++.|.+ +.+|.-++++ +..++ +.+..+++|+||||||+
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg-~~~~~--r~~~~~~dIv~gTpgrl 183 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNS-MSKDE--KREAYAADITYSTNNEL 183 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT-SCHHH--HHHHHHSSEEEEEHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC-CCHHH--HHHhcCCCEEEECchhh
Confidence 36899999999999999999999843 4567777876 56544 44456899999999998
No 26
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.70 E-value=4.5e-05 Score=73.50 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=48.4
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcc--c----chhhhhccCCCHHHH---HHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKE--C----HAVKLFSKHMKVEEQ---VSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~--~----~v~KLFaKh~Ki~eQ---i~~Lk~~v~I~VGTPgRl~ 157 (160)
..+++|||+||+++|.|+.+.++.+.+. . ++..++|+ ....+| .+.|++ ++|+|||||||.
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg-~~~~~~~~~~~~l~~-~~IlV~TP~~L~ 167 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGR-IPKREKENFMQNLRN-FKIVITTTQFLS 167 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSS-CCSHHHHHHHHSGGG-CSEEEEEHHHHH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCC-CChhhHHHHHhhccC-CCEEEEcHHHHH
Confidence 3589999999999999999999998543 3 56677776 566664 555556 999999999985
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.69 E-value=7.9e-06 Score=69.70 Aligned_cols=62 Identities=10% Similarity=-0.013 Sum_probs=51.5
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..+.+|||+|++++|.|+.+.++.+.+ +.++..+++. ....++.+.+..+.+|+|+||||+.
T Consensus 51 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~v~T~~~l~ 114 (555)
T 3tbk_A 51 QKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGA-TSDSVSVQHIIEDNDIIILTPQILV 114 (555)
T ss_dssp CCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTT-TGGGSCHHHHHHHCSEEEECHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCC-CcchhhHHHHhcCCCEEEECHHHHH
Confidence 367899999999999999999999843 5567777776 4677777777778999999999974
No 28
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.65 E-value=4e-05 Score=63.26 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=51.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
+.+++|||+|++++|.|+.+.++.+.+ +.++..+.+. .+..++...+..+.+|+|+||+|+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~Ivv~T~~~l 150 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGG-TNLRDDILRLNETVHILVGTPGRV 150 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSS-SCHHHHHHHTTSCCSEEEECHHHH
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCC-cchHHHHHHhcCCCCEEEEchHHH
Confidence 457899999999999999999999843 3455666665 588888888888999999999987
No 29
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.65 E-value=5.4e-05 Score=61.99 Aligned_cols=63 Identities=19% Similarity=0.403 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhc---ccchhhhhccCCCHHHHHHHHhc-CCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTK---ECHAVKLFSKHMKVEEQVSLLKN-RVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k---~~~v~KLFaKh~Ki~eQi~~Lk~-~v~I~VGTPgRl~ 157 (160)
.+.+.+|||+|+++++.|+.+.++.+.+ +.++.-+.++ ....++.+.++. ..+|+|+||+|+.
T Consensus 74 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~iiv~T~~~l~ 140 (391)
T 1xti_A 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG-LSIKKDEEVLKKNCPHIVVGTPGRIL 140 (391)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTT-SCHHHHHHHHHHSCCSEEEECHHHHH
T ss_pred CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCC-CCHHHHHHHHhcCCCCEEEECHHHHH
Confidence 3568999999999999999999999843 4556666665 588899888875 4899999999974
No 30
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.61 E-value=5e-05 Score=62.66 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=50.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHh-cCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLK-NRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk-~~v~I~VGTPgRl~ 157 (160)
..+++|||+|++++|.|+.+.++.+.. ...+..++++ ....++.+.+. .+.+|+|+||||+.
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~T~~~l~ 171 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG-TNVRAEVQKLQMEAPHIIVGTPGRVF 171 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCC-TTHHHHHHHHTTTCCSEEEECHHHHH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECC-cchHHHHHHHhcCCCCEEEECHHHHH
Confidence 567899999999999999999999843 2345555665 47888888887 77999999999964
No 31
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.48 E-value=8.7e-05 Score=60.62 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=50.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
...+++|||+|++++|.|+.+.++.+.. +.++..+.++ ....++...++ +.+|+|+||+++.
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-~~~i~v~T~~~l~ 150 (394)
T 1fuu_A 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG-TSFVEDAEGLR-DAQIVVGTPGRVF 150 (394)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSS-CCHHHHHHHHH-HCSEEEECHHHHH
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCC-CchHHHHhhcC-CCCEEEECHHHHH
Confidence 3568999999999999999999998843 3556666665 57888877776 7899999999863
No 32
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.46 E-value=0.00011 Score=59.16 Aligned_cols=61 Identities=21% Similarity=0.380 Sum_probs=50.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
+.+.+||++|++++|.|+.+.++.+.+ ...+..+.++ ....++.+.++ +.+|+|+||+++.
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~-~~~iiv~T~~~l~ 135 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGG-KAIYPQIKALK-NANIVVGTPGRIL 135 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTT-SCHHHHHHHHH-TCSEEEECHHHHH
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECC-cchHHHHhhcC-CCCEEEecHHHHH
Confidence 468899999999999999999999843 3456667766 48888888877 7899999999874
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.43 E-value=5.6e-05 Score=69.84 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=48.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+.+|||+|+++++.|+.+.++.+.+ +.++..+++. ....++...+..+.+|+|+||+|+.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~~~~Ivv~Tp~~l~ 358 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGE-NFSNVSVEKVIEDSDIIVVTPQILV 358 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC------CHHHHHHTCSEEEECHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCC-cchhhhHHHhhCCCCEEEEchHHHH
Confidence 67899999999999999999999854 5677777776 4777778888889999999999974
No 34
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.36 E-value=0.00011 Score=70.96 Aligned_cols=57 Identities=9% Similarity=0.086 Sum_probs=45.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
++++|||||+++|.|+++.++.|.+ +.+|.-++++ +.. |.+.+..+++|+||||||+
T Consensus 153 ~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg-~~~--~~r~~~y~~DIvygTpgrl 211 (922)
T 1nkt_A 153 NGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILAT-MTP--DERRVAYNADITYGTNNEF 211 (922)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT-CCH--HHHHHHHHSSEEEEEHHHH
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC-CCH--HHHHHhcCCCEEEECchHh
Confidence 5899999999999999999999843 4567777776 554 4455555799999999998
No 35
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.35 E-value=0.00017 Score=57.44 Aligned_cols=60 Identities=15% Similarity=0.366 Sum_probs=49.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+.+|||+|+++++.|+.+.++.+.+ +.++..++++ ....++.+.++. .+|+|+||+|+.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~i~v~T~~~l~ 117 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGG-MPYKAQINRVRN-ADIVVATPGRLL 117 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTT-SCHHHHHHHHTT-CSEEEECHHHHH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECC-cchHHHHhhcCC-CCEEEECHHHHH
Confidence 36899999999999999999998743 3556667766 578888888764 899999999863
No 36
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.25 E-value=7.3e-05 Score=66.82 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=49.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+.+|||+|+++++.|..+.++.+.+ +.++..+.|. ....++.+.+..+.+|+|+|||||.
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~~~~Iiv~Tp~~L~ 123 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGA-TAENVPVEQIVENNDIIILTPQILV 123 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSS-SCSSSCHHHHHHTCSEEEECHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCC-ccccccHHHhccCCCEEEECHHHHH
Confidence 36899999999999999999999853 4566767765 4566677777778999999999974
No 37
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00012 Score=71.04 Aligned_cols=57 Identities=7% Similarity=-0.078 Sum_probs=46.3
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
.+++|||||+++|.|++..++.|.+ +.+|.-++++ ++ .|.+.+..+++|+||||||+
T Consensus 121 ~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg-~~--~~~r~~ay~~DIvyGTpgrl 179 (997)
T 2ipc_A 121 KGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHA-ST--PAERRKAYLADVTYVTNSEL 179 (997)
T ss_dssp SCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTT-CC--HHHHHHHHTSSEEEEEHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC-CC--HHHHHHHcCCCEEEECchhh
Confidence 4799999999999999999999843 4567777776 45 45555566899999999998
No 38
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.12 E-value=7.1e-05 Score=56.42 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=44.4
Q ss_pred CCCeEEEEcCchhhHHH-HHHHHhhhhc-ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIE-LLKGLRSLTK-ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~d-v~r~l~~~~k-~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..+++||++|+++++.| +.+.++.|.. ..++..+.+. ....++...+..+.+|+|+||+++.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~~~~i~v~T~~~l~ 144 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGD-TQLKISFPEVVKSCDIIISTAQILE 144 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC----CCCCHHHHHHHCSEEEEEHHHHH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCC-cccchhHHhhccCCCEEEECHHHHH
Confidence 45789999999999999 7788888743 3455666554 3444455555567999999999873
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.10 E-value=0.00055 Score=64.47 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=47.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHH---HHHHHhcC-CcEEEeCCCce
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEE---QVSLLKNR-VNFAGGTPSRL 156 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~e---Qi~~Lk~~-v~I~VGTPgRl 156 (160)
.++++|++||+++|.|+++.++.+.+ +.+|+-+.+. .+..+ +.+.+++| ++|+||||+++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~-~~~~~r~~~~~~l~~g~~~IvVgT~~ll 482 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGA-TTPSEKEKIKSGLRNGQIDVVIGTHALI 482 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSS-SCHHHHHHHHHHHHSSCCCEEEECTTHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCC-CCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 37999999999999999999998743 4667777766 56655 44555655 99999999987
No 40
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.08 E-value=0.00013 Score=69.25 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=48.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+.+|||+|+++++.|+.+.++.+.+ +.++..+++. ....+|...+..+.+|+|+|||||.
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~-~~~~~~~~~~~~~~~IvI~Tp~~L~ 358 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGE-NFSNVSVEKVIEDSDIIVVTPQILV 358 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC------CCHHHHHHCSEEEECHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECC-cchhhHHHHhccCCCEEEecHHHHH
Confidence 67899999999999999999999844 5677777776 4777777777788999999999974
No 41
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.08 E-value=0.00015 Score=62.18 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=40.8
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhhhhcc---cchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 93 DPGSPAVLIISSSALRSIELLKGLRSLTKE---CHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 93 ~~~sP~~lIl~~Sa~ra~dv~r~l~~~~k~---~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
..+.|++|||+|++++|.|+.+.++.+.+. ..+.-.. .|..+.... +.+.+|+||||||+
T Consensus 159 ~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~Ivv~Tp~~l 221 (479)
T 3fmp_B 159 ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV-RGNKLERGQ---KISEQIVIGTPGTV 221 (479)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEES-TTCCCCTTC---CCCCSEEEECHHHH
T ss_pred cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEe-CCccccccc---cCCCCEEEECchHH
Confidence 346679999999999999998888887432 2222222 222332211 34679999999998
No 42
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.86 E-value=0.00026 Score=58.16 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=41.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhc---ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTK---ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k---~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+.+++|||+|++++|.|+.+.++.+.+ +..+.-..+. ...+++. ..+.+|+||||+|+.
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~T~~~l~ 155 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-NKLERGQ---KISEQIVIGTPGTVL 155 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTT-CCCCTTC---CCCCSEEEECHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecC-cchhhhh---cCCCCEEEECchHHH
Confidence 4568999999999999999999998743 2233333332 2222211 346799999999973
No 43
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.85 E-value=9.7e-05 Score=66.06 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=48.2
Q ss_pred CCeEEEEcCchhhHHHH-HHHHhhhhcc-cchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIEL-LKGLRSLTKE-CHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv-~r~l~~~~k~-~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+.+|||+|+++++.|+ .+.++.+.+. .++..+.+. ....++...+..+.+|+|+||+||.
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~-~~~~~~~~~~~~~~~Ilv~Tp~~L~ 118 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGD-TQLKISFPEVVKSCDIIISTAQILE 118 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC-----CCCCHHHHHHSCSEEEEEHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCC-cchhhHHHhhhcCCCEEEECHHHHH
Confidence 46799999999999999 9999998544 677777776 4666666777788999999999985
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.53 E-value=0.0009 Score=57.66 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=46.4
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhh--cccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLT--KECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~--k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
+.+++|||+|+++++.|..+.++.|. ....+..+.++. ...+| +..+.+|+||||+++.
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~-~~~~~---~~~~~~I~i~T~~~l~ 216 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGA-SKDDK---YKNDAPVVVGTWQTVV 216 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGC-CTTGG---GCTTCSEEEEEHHHHT
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCC-ccccc---cccCCcEEEEeHHHHh
Confidence 34699999999999999999999983 334667777763 44444 5578999999999764
No 45
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.47 E-value=0.0013 Score=53.32 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=40.0
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhhhhcc--cchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 94 PGSPAVLIISSSALRSIELLKGLRSLTKE--CHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 94 ~~sP~~lIl~~Sa~ra~dv~r~l~~~~k~--~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
...+++|||+|++++|.|+.+.++.+.+. ..+.-+.+..... ....+.+|+|+||+|+.
T Consensus 73 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~iiv~T~~~l~ 133 (395)
T 3pey_A 73 DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK-----NKQINAQVIVGTPGTVL 133 (395)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT-----TSCBCCSEEEECHHHHH
T ss_pred CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh-----hccCCCCEEEEcHHHHH
Confidence 35689999999999999999999987432 2222222221111 01247899999999874
No 46
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.29 E-value=0.0034 Score=51.39 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=46.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhh--cccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLT--KECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~--k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..+.+|||+|++.++.|..++++.+. ...++..+.+. ....++.+.. .+.+|+|+||+++.
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~-~~~~ivv~T~~~l~ 113 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGE-KSPEERSKAW-ARAKVIVATPQTIE 113 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSC-SCHHHHHHHH-HHCSEEEECHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCC-cchhhhhhhc-cCCCEEEecHHHHH
Confidence 34689999999999999999999984 23355656555 4666554443 47899999999864
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.02 E-value=0.002 Score=59.95 Aligned_cols=52 Identities=8% Similarity=0.026 Sum_probs=37.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.++||++|+|++|.|+++.+..+.+ ..+....+.. . ++.+.+|+||||||++
T Consensus 258 ~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~-~-------~~~~~~IlV~TPGrLl 309 (666)
T 3o8b_A 258 YKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVR-T-------ITTGAPVTYSTYGKFL 309 (666)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSC-E-------ECCCCSEEEEEHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcE-e-------ccCCCCEEEECcHHHH
Confidence 4899999999999999987766522 1223333332 1 4578999999999974
No 48
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=95.88 E-value=0.0031 Score=50.59 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=41.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
...+|||+|+++++.|..++++.|.. ...+..++++.-+-+ .+..+.+|+|+||+++.
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~I~v~T~~~l~ 216 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD----KYKNDAPVVVGTWQTVV 216 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT----CCCTTCSEEEECHHHHT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh----hhccCCcEEEEchHHHH
Confidence 34899999999999999999999843 234455655532211 22257899999999864
No 49
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=95.76 E-value=0.0088 Score=54.14 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=44.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH------hcCCcEEEeCCCcee
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL------KNRVNFAGGTPSRLV 157 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L------k~~v~I~VGTPgRl~ 157 (160)
+.+|||+|+++++.|..+.++.+ +.++.-+.+. ...+++...+ ..+.+|+|+||+||.
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~--gi~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~ 148 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQL--GISATMLNAS-SSKEHVKWVHAEMVNKNSELKLIYVTPEKIA 148 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHH--TCCEEECCSS-CCHHHHHHHHHHHHCTTCCCCEEEECHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhc--CCcEEEEeCC-CCHHHHHHHHHHhhcccCCCCEEEEChhHhh
Confidence 58999999999999999999998 4445555554 5666554433 246899999999873
No 50
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.56 E-value=0.0045 Score=54.16 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=37.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcccc--hhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKECH--AVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~--v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..+++|||+|++++|.|+.+.++.+.+... +...++.. .......+.+|+||||+++.
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Ivv~T~~~l~ 247 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS-----VPKGAKIDAQIVIGTPGTVM 247 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC---------------CCCCSEEEECHHHHH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCc-----ccccccCCCCEEEECHHHHH
Confidence 467999999999999999999999843321 12222211 11111347899999999864
No 51
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.43 E-value=0.01 Score=57.78 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=42.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhccCCC---HHHHHHHHhcC-CcEEEeCCCce
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSKHMK---VEEQVSLLKNR-VNFAGGTPSRL 156 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaKh~K---i~eQi~~Lk~~-v~I~VGTPgRl 156 (160)
.++++||+||+++|.|..+.++.+-+ ..++.-+. +... ..++++.|+.| ++|+||||+++
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~-~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll 717 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMIS-RFRSAKEQTQILAEVAEGKIDILIGTHKLL 717 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEES-TTSCHHHHHHHHHHHHTTCCSEEEECTHHH
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEe-CCCCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 46999999999999999999987522 23333332 2233 34455666655 99999999876
No 52
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.35 E-value=0.00087 Score=52.65 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=36.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..+.++++.|++++|.|+.+.+....+. .+....+-....+ -...+.+.+|+||||||++
T Consensus 108 ~~~~~l~~~p~~~la~q~~~~~~~~~~~-~~~~~~g~~~~~~--~~~~~~~~~Ivv~Tpg~l~ 167 (235)
T 3llm_A 108 AECNIVVTQPRRISAVSVAERVAFERGE-EPGKSCGYSVRFE--SILPRPHASIMFCTVGVLL 167 (235)
T ss_dssp GGCEEEEEESSHHHHHHHHHHHHHTTTC-CTTSSEEEEETTE--EECCCSSSEEEEEEHHHHH
T ss_pred CceEEEEeccchHHHHHHHHHHHHHhcc-ccCceEEEeechh--hccCCCCCeEEEECHHHHH
Confidence 4579999999999999999888765221 1111111111110 0001145889999999974
No 53
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.0085 Score=58.28 Aligned_cols=52 Identities=12% Similarity=-0.032 Sum_probs=40.2
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+++||++|++++|.|+++.++.+.+ .|.-+.+. .. +..+++|+|+|||||.
T Consensus 227 g~rvlvl~PtraLa~Q~~~~l~~~~~--~VglltGd-~~-------~~~~~~IlV~Tpe~L~ 278 (1108)
T 3l9o_A 227 KQRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGD-IT-------INPDAGCLVMTTEILR 278 (1108)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTS--SEEEECSS-CB-------CCCSCSEEEEEHHHHH
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhC--CccEEeCc-cc-------cCCCCCEEEeChHHHH
Confidence 57999999999999999999999744 23434443 23 3457999999999873
No 54
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.82 E-value=0.0083 Score=54.29 Aligned_cols=57 Identities=7% Similarity=0.003 Sum_probs=41.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhc-ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTK-ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k-~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.++|+++|++++|.|+++.++.+.. +.+|..+.|.. ...++ .+ .+.+|+|+|||++.
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~-~~~~~--~~-~~~~Iiv~Tpe~l~ 133 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDY-DTDDA--WL-KNYDIIITTYEKLD 133 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCS-SSCCG--GG-GGCSEEEECHHHHH
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCC-CCchh--hc-CCCCEEEEcHHHHH
Confidence 6999999999999999999977643 45666666543 22221 22 37899999999864
No 55
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.49 E-value=0.0056 Score=55.50 Aligned_cols=58 Identities=10% Similarity=-0.027 Sum_probs=41.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhc-ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTK-ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k-~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+++|+++|++++|.|+++.++.|.. +.++..+.|....-++ .+ .+.+|+|+|||++.
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~-~~~~Iiv~Tpe~l~ 126 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HL-GDCDIIVTTSEKAD 126 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CS-TTCSEEEEEHHHHH
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hc-cCCCEEEECHHHHH
Confidence 36899999999999999999987743 4556666554322111 12 37899999999864
No 56
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.43 E-value=0.021 Score=48.50 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=39.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccc-hhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECH-AVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~-v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
..++|||+|+++++.|..+.++.| +.+ +..+.++. +...+|+||||+++.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~~v~~~~g~~----------~~~~~Ivv~T~~~l~ 183 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIF--GEEYVGEFSGRI----------KELKPLTVSTYDSAY 183 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGG--CGGGEEEBSSSC----------BCCCSEEEEEHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCcceEEECCCc----------CCcCCEEEEEcHHHH
Confidence 368999999999999999999998 444 55555542 236799999998864
No 57
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.41 E-value=0.033 Score=49.24 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=43.0
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---h-cCCcEEEeCCCcee
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---K-NRVNFAGGTPSRLV 157 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k-~~v~I~VGTPgRl~ 157 (160)
..+|||+|+++++.|..+.++.+ +..+.-+.+. ...+++...+ . ...+|+++||+|+.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~--gi~~~~l~~~-~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~ 127 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN--GVAAACLNST-QTREQQLEVMTGCRTGQIRLLYIAPERLM 127 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTT-SCHHHHHHHHHHHHHTCCSEEEECHHHHT
T ss_pred CCEEEECChHHHHHHHHHHHHHc--CCcEEEEeCC-CCHHHHHHHHHHHhcCCCCEEEECHHHHh
Confidence 57999999999999999999987 3334444443 4556554433 3 45899999999985
No 58
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=94.40 E-value=0.015 Score=55.89 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=41.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
.+++||++|++++|.|+++.++.+.++.++.-+.+.. . .....+|+|+|||||
T Consensus 82 g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~-~-------~~~~~~IlV~Tpe~L 134 (997)
T 4a4z_A 82 MTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDV-Q-------INPDANCLIMTTEIL 134 (997)
T ss_dssp TCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSC-E-------ECTTSSEEEEEHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCC-c-------cCCCCCEEEECHHHH
Confidence 4789999999999999999999975555666666653 2 234689999999987
No 59
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.39 E-value=0.033 Score=49.42 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhh
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLT 120 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~ 120 (160)
.+++||++||++++.|+.++++.+.
T Consensus 47 ~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 47 KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 4899999999999999999999883
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.26 E-value=0.014 Score=53.14 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=42.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhc-ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTK-ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k-~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.++|+++|++.+|.|+++.++.|.. +.+|..+.|. ...+++ .+ .+.+|+|+||+++.
T Consensus 69 ~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~-~~~~~~--~~-~~~~Iiv~Tpe~l~ 126 (720)
T 2zj8_A 69 GKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGD-YDSKDE--WL-GKYDIIIATAEKFD 126 (720)
T ss_dssp SEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSC-SSCCCG--GG-GGCSEEEECHHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCC-CCcccc--cc-CCCCEEEECHHHHH
Confidence 7999999999999999999987743 4566666654 333221 22 37899999999873
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.17 E-value=0.011 Score=52.15 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=28.4
Q ss_pred CCCeEEEEcCchhhHHHHH-HHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELL-KGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~-r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
+.+++|||+|+++++.|.. +.++.|.... ..+-++ .+..+.+|+|+||+++.
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~--~~~~~~---------~~~~~~~I~v~T~~~l~ 286 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGDAR--HKIEGG---------KVVKSREIYFAIYQSIA 286 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCSSE--EECCC-----------CCSSCSEEEEEGGGC-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcchhh--hhhhcc---------CCCCCCcEEEEEhhhhc
Confidence 6789999999999999999 8888884322 222111 23467899999999985
No 62
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=94.10 E-value=0.029 Score=54.55 Aligned_cols=58 Identities=9% Similarity=0.006 Sum_probs=45.4
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh-cCCcEEEeCCCcee
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK-NRVNFAGGTPSRLV 157 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk-~~v~I~VGTPgRl~ 157 (160)
+.+++|||+|+++++.|+.+.++.|.... + .+ .....++.+.|+ .+.+|+|+||+|+.
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~-v---~~-~~s~~~l~~~L~~~~~~IiVtTiqkl~ 387 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPDS-V---NG-SENTAGLKRNLDKDDNKIIVTTIQKLN 387 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTTC-S---SS-SCCCHHHHHHHHCSSCCEEEEEHHHHH
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhcccc-c---cc-ccCHHHHHHHhcCCCCCEEEEEHHHHH
Confidence 34799999999999999999999985431 1 12 235677778886 57899999999874
No 63
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=92.97 E-value=0.046 Score=47.22 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=22.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
.+++||++||+++|.|+++.++.+
T Consensus 37 ~~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 37 RLRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCeEEEEcchHHHHHHHHHHHhcC
Confidence 489999999999999999999876
No 64
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=92.83 E-value=0.073 Score=54.16 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=42.4
Q ss_pred CeEEEEcCchhhHHHHHHHHhh-hhc--ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 97 PAVLIISSSALRSIELLKGLRS-LTK--ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~-~~k--~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
..+|+++|++++|.|+++.++. |.+ +.+|..+.|. ...+.+.+ .+.+|+|+||+|+
T Consensus 973 ~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd---~~~~~~~~-~~~~IiV~TPEkl 1031 (1724)
T 4f92_B 973 GRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGE---TSTDLKLL-GKGNIIISTPEKW 1031 (1724)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSC---HHHHHHHH-HHCSEEEECHHHH
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECC---CCcchhhc-CCCCEEEECHHHH
Confidence 4799999999999999999975 543 4566766654 34444444 4679999999996
No 65
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.03 Score=54.00 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=39.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
.+++||++|++++|.|+++.++.+.+ +|.-+.|. .++ ..+.+|+|+||+|+
T Consensus 129 g~rvL~l~PtkaLa~Q~~~~l~~~~~--~vglltGd-~~~-------~~~~~IvV~Tpe~L 179 (1010)
T 2xgj_A 129 KQRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGD-ITI-------NPDAGCLVMTTEIL 179 (1010)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHHS--CEEEECSS-CEE-------CTTCSEEEEEHHHH
T ss_pred CCeEEEECChHHHHHHHHHHHHHHhC--CEEEEeCC-Ccc-------CCCCCEEEEcHHHH
Confidence 47999999999999999999998744 33444443 232 24689999999986
No 66
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.07 E-value=0.13 Score=40.54 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=37.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccc-hhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECH-AVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~-v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
...+||++|+++++.|+.++++.| +.+ +..+.+.. +...+|+|+||+++.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~--~~~~v~~~~g~~----------~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIF--GEEYVGEFSGRI----------KELKPLTVSTYDSAY 183 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGG--CGGGEEEESSSC----------BCCCSEEEEEHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC--CCCeEEEEeCCC----------CCcCCEEEEeHHHHH
Confidence 367999999999999999999997 333 34443332 236789999998753
No 67
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=89.87 E-value=0.18 Score=46.54 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.6
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhh
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
+.+++|||+||+++|.|+.+.++.+
T Consensus 269 ~~~~~lilaPTr~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 269 KRLRTAVLAPTRVVAAEMAEALRGL 293 (673)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCcEEEEccHHHHHHHHHHHHhcC
Confidence 3489999999999999999999876
No 68
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.33 E-value=0.79 Score=33.54 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=41.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
.++||.|++...|..+++.|+.. +..+..+.++ +.-++..+.++ ..++|.|+|.
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~-~~~~~r~~~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGG-MIQEDRFDVMNEFKRGEYRYLVATD 93 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT-SCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred CcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCC-CCHHHHHHHHHHHHcCCCeEEEECC
Confidence 47999999999999999999886 3445667665 66666665553 3579999993
No 69
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.09 E-value=0.73 Score=33.72 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=41.2
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
..++||.|++...|..+++.|+.. +..+..+.+. +.-+++.+.++ ..++|.|+|.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~-~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSD-LPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTT-SCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECC-CCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 367999999999999999999876 3345666665 67666655553 3579999983
No 70
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.02 E-value=1.4 Score=32.43 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=41.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---hc-CCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---KN-RVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k~-~v~I~VGTP 153 (160)
..++||.|+++..|..+++.|+.. +..+.-+.++ +.-++..+.+ ++ .++|.|+|.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~-~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGE-LTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSS-CCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCC-CCHHHHHHHHHHHHcCCCeEEEEec
Confidence 358999999999999999999886 3345666654 6666665555 33 579999994
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=87.85 E-value=0.24 Score=45.92 Aligned_cols=44 Identities=5% Similarity=-0.058 Sum_probs=31.2
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
+.++|++|++++|.|+++.++... .++..+. .+..+.|+||||+
T Consensus 180 ~~gl~l~PtR~LA~Qi~~~l~~~g--~~v~llt--------------G~~~~iv~TpGr~ 223 (677)
T 3rc3_A 180 KSGVYCGPLKLLAHEIFEKSNAAG--VPCDLVT--------------GEERVTVQPNGKQ 223 (677)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTT--CCEEEEC--------------SSCEECCSTTCCC
T ss_pred CCeEEEeCHHHHHHHHHHHHHhcC--CcEEEEE--------------CCeeEEecCCCcc
Confidence 456999999999999999988862 2333232 2455677888774
No 72
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=87.82 E-value=0.26 Score=50.24 Aligned_cols=58 Identities=9% Similarity=0.072 Sum_probs=42.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhh-hc-ccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCce
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSL-TK-ECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRL 156 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~-~k-~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl 156 (160)
+...+|+|+|++.+|.|+.+.++.. .. +.+|.-+.|. ..+.++ ...+.+|+|+||+++
T Consensus 133 ~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd-~~~~~~---~~~~~~IlVtTpEkl 192 (1724)
T 4f92_B 133 DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGD-HQLCKE---EISATQIIVCTPEKW 192 (1724)
T ss_dssp TSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSS-CSSCCT---TGGGCSEEEECHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECC-CCCCcc---ccCCCCEEEECHHHH
Confidence 4568999999999999999999874 22 4566667665 344322 124789999999975
No 73
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=87.69 E-value=1.2 Score=33.91 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=41.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
+.+||.|++...|-.+++.|+.. +..+..+.+. +.-+++.+.++ ..++|.|+|.
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~-~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGG-KDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTT-SCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCC-CCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 47999999999999999999876 4455667765 67666665553 3589999983
No 74
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.99 E-value=1.1 Score=34.54 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=42.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh---c-CCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK---N-RVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk---~-~v~I~VGTP 153 (160)
-.+||.|++...+-.+++.|+.. +..+.-+.|+ +.-+++.+.++ + ..+|+|+|.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~-~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGD-LSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSS-SCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECC-CCHHHHHHHHHHHHCCCCeEEEecC
Confidence 47999999999999999999876 4456777776 67777776664 3 479999994
No 75
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.34 E-value=1.5 Score=32.49 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=41.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
.++||.|++...|..+++.|+.. +..+..+.++ +.-++..+.++ ..++|.|+|.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~-~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRG-MPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT-SCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECC-CCHHHHHHHHHHHHCCCCcEEEECC
Confidence 57999999999999999999886 3445666665 67666655553 3579999995
No 76
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=84.52 E-value=0.2 Score=43.39 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
.+++||++|++++|.|+.+.++.+
T Consensus 50 ~~~~lvl~Ptr~La~Q~~~~l~g~ 73 (459)
T 2z83_A 50 RLRTAVLAPTRVVAAEMAEALRGL 73 (459)
T ss_dssp TCCEEEEECSHHHHHHHHHHTTTS
T ss_pred CCcEEEECchHHHHHHHHHHhcCc
Confidence 479999999999999999999865
No 77
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=84.47 E-value=0.14 Score=47.81 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=37.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
.+.++|++|++++|.|+++.+.... +..+....+..+..+++ ...+.+|+|+|||++.
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~~-~~~v~~~vG~~i~~~~~---~~~~~~I~v~T~G~l~ 197 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEEM-DVKLGEEVGYSIRFENK---TSNKTILKYMTDGMLL 197 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHT-TCCBTTTEEEEETTEEE---CCTTCSEEEEEHHHHH
T ss_pred CceEEecCchHHHHHHHHHHHHHHh-CCchhheecceeccccc---cCCCCCEEEECHHHHH
Confidence 4789999999999999998776542 22333344422222111 1247899999999874
No 78
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=83.77 E-value=2.2 Score=34.48 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=41.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
.++||.|+|+..|..+++.|+.. +..+.-+.++ +.-+++.+.++ ...+|+|+|.
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~-~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE--GHQVALLSGE-MMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTT-SCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCC-CCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 58999999999999999999987 3445666665 67776666653 3579999994
No 79
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=83.72 E-value=0.57 Score=40.29 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
.+++||++|++++|.|+.+.++.+
T Consensus 48 ~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 48 RLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCcEEEECCCHHHHHHHHHHhcCc
Confidence 489999999999999999998765
No 80
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.79 E-value=2 Score=35.48 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=42.4
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
..+||.|+|...|-.+++.|+.. +..+.-|+|+ +.-+++.+.++ ...+|+|+|-
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~-l~~~~r~~~~~~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGD-MSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSC-CCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred CCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCC-CCHHHHHHHHHHhhcCCceEEEEec
Confidence 57999999999999999999876 4456778776 67666666663 3579999994
No 81
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=80.78 E-value=3.4 Score=33.62 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=42.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
....+||.|+|+..|..+++.|+.. +..+..+.++ +.-+++.+.++ ...+|+|+|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~-~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGD-RSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT-SCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCC-CCHHHHHHHHHHHHcCCCCEEEECC
Confidence 4568999999999999999999876 3345666665 67666655553 3579999994
No 82
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=80.66 E-value=3.2 Score=33.13 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=42.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh---c-CCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK---N-RVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk---~-~v~I~VGTP 153 (160)
...+||.|+++..|..+++.|+.. +..+.-+.++ +.-+++.+.++ + ..+|+|+|.
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~-~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGD-LQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTT-SCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCC-CCHHHHHHHHHHHHCCCCCEEEECC
Confidence 368999999999999999999886 3445666665 67666666653 3 578999984
No 83
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=80.46 E-value=3.3 Score=32.65 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=41.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---h-cCCcEEEeCC
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---K-NRVNFAGGTP 153 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k-~~v~I~VGTP 153 (160)
....+||+|++...|..+++.|+.. +..+.-+.++ +.-+++.+.+ + ...+|+|+|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~-~~~~~r~~~~~~f~~~~~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGD-LSQSQREKVIRLFKQKKIRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSS-SCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCC-CCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4457899999999999999999986 3344555554 5666555555 3 3579999995
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=80.42 E-value=1.4 Score=33.20 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=35.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---h-cCCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---K-NRVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k-~~v~I~VGTP 153 (160)
..++||.|++...|..+++.|+.. +..+..+.++ +.-+++.+.+ + ..++|.|+|.
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~-~~~~~r~~~~~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGD-RSQRDREEALHQFRSGKSPILVATA 104 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC---------CHHHHHHHHTSSSEEEEEC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCC-CCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 467999999999999999999875 3445666665 4444443333 4 3579999983
No 85
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=79.88 E-value=3.7 Score=33.24 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=40.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh---c-CCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK---N-RVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk---~-~v~I~VGTP 153 (160)
..++||+|++...|..+++.|+... ..+.-+.++ +.-+++.+.++ + ..+|+|+|.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~~~~-~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG--YSCYYSHAR-MKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT--CCEEEECTT-SCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC--CCeEEecCC-CCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 3589999999999999999998863 334555554 67666655553 3 579999994
No 86
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=77.65 E-value=4.9 Score=32.24 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=40.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh---c-CCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK---N-RVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk---~-~v~I~VGTP 153 (160)
..++||+|++...|..+++.|+.. +..+..+.++ +.-+++.+.++ + ..+|+|+|.
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~-~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRG-MPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTT-SCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeCC-CCHHHHHHHHHHHhcCCCcEEEECC
Confidence 358999999999999999999876 3344556555 66666655553 3 579999995
No 87
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=77.52 E-value=0.9 Score=38.69 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=37.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCCcee
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPSRLV 157 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPgRl~ 157 (160)
...+|||||+. ++.|..++++.|..+.++.-+.+..-+ ......+|+|+||+++.
T Consensus 86 ~~~~LIv~P~~-l~~qw~~e~~~~~~~~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~ 140 (500)
T 1z63_A 86 LTPSLVICPLS-VLKNWEEELSKFAPHLRFAVFHEDRSK------IKLEDYDIILTTYAVLL 140 (500)
T ss_dssp CSSEEEEECST-THHHHHHHHHHHCTTSCEEECSSSTTS------CCGGGSSEEEEEHHHHT
T ss_pred CCCEEEEccHH-HHHHHHHHHHHHCCCceEEEEecCchh------ccccCCcEEEeeHHHHh
Confidence 45799999965 679999999998655555444433211 11246799999999864
No 88
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=77.39 E-value=3.9 Score=36.74 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=42.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
....+||.|+|+..|.++++.|+.. +..+..+.|+ +.-++..+.++ ..++|+|+|-
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~--g~~~~~~h~~-l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL--GIHAGAYHAN-LEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT-SCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC--CCCEEEecCC-CCHHHHHHHHHHHHcCCCeEEEEec
Confidence 3468999999999999999999886 3455666665 67666655553 4589999995
No 89
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=76.97 E-value=2.6 Score=35.99 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=39.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh-cCCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK-NRVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk-~~v~I~VGTP 153 (160)
.++||+|++...|..+++.|+.. +.++..+.++ .-++.++..+ ...+|+|+|-
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~--~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRK--TFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTT--THHHHTTHHHHSCCSEEEECG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCc--cHHHHHHhhcCCCCeEEEECc
Confidence 47999999999999999999987 4456767665 2333444445 4579999994
No 90
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=76.74 E-value=4.5 Score=34.87 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=43.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhh-hcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSL-TKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~-~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
...++||.|+|+..|..+++.|+.. ..+..+..+.|+ +.-+++.+.++ ..++|+|+|.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~-~~~~~R~~~~~~f~~g~~~vLvaT~ 400 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK-ITQNKRTSLVKRFKKDESGILVCTD 400 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTT-SCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCC-CCHHHHHHHHHHHhcCCCCEEEEcc
Confidence 3458999999999999999999875 335566767665 66666655553 3589999995
No 91
>1suy_C CIIABD, circadian clock protein KAIC; X-class four helix bundle, protein-peptide complex, circadia protein; NMR {Thermosynechococcus elongatus} PDB: 1sv1_C
Probab=76.73 E-value=0.49 Score=27.68 Aligned_cols=14 Identities=29% Similarity=0.741 Sum_probs=11.8
Q ss_pred CcEEEeCCCceeec
Q 031382 146 VNFAGGTPSRLVIN 159 (160)
Q Consensus 146 v~I~VGTPgRl~~~ 159 (160)
.+|+.|||.||.|.
T Consensus 3 agiisgtptrisvd 16 (34)
T 1suy_C 3 AGIISGTPTRISVD 16 (34)
T ss_dssp SCCCCCCSSCSCCC
T ss_pred cccccCCCceEeec
Confidence 46889999999875
No 92
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=76.49 E-value=4.8 Score=35.28 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=43.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh-hcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL-TKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~-~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
...+||.|+|+..|..+++.|+.. ..+..+..+.|+ +.-++..+.++ ..++|+|+|.
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~-~~~~~R~~~~~~F~~g~~~vLVaT~ 349 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK-ITQNKRTSLVKRFKKDESGILVCTD 349 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTT-SCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCC-CCHHHHHHHHHHhhcCCCeEEEEcc
Confidence 458999999999999999999875 335556667665 66666655553 3589999994
No 93
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=75.68 E-value=4.9 Score=32.70 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=40.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
.++||.|+|...|..+++.|+.. +..+..+.++ +.-+++.+.++ ...+|+|+|.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~-~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGD-MPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTT-SCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCC-CCHHHHHHHHHHHHCCCCCEEEECC
Confidence 48999999999999999999886 3345666665 56666555553 3579999994
No 94
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=73.79 E-value=4.7 Score=35.35 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=41.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh----cCCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK----NRVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk----~~v~I~VGTP 153 (160)
...+||.|+|+..|.++++.|+.. +..+..+.|+ +.-++..+.++ ..++|+|+|.
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~--g~~~~~~h~~-l~~~~R~~~~~~f~~g~~~vlVaT~ 294 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK--GISAAAYHAG-LENNVRADVQEKFQRDDLQIVVATV 294 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT-SCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC--CCCEEEecCC-CCHHHHHHHHHHHHcCCCeEEEEec
Confidence 357999999999999999999886 3445666665 66555544442 4689999995
No 95
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=72.01 E-value=3.1 Score=35.64 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=35.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh-cCCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK-NRVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk-~~v~I~VGTP 153 (160)
.++||+|+|...|.++++.|+.. +.++..+.++. -++.++..+ ..++|+|+|.
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~--R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA--GKSVVVLNRKT--FEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT--TCCEEECCSSS--CC--------CCCSEEEESS
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecchh--HHHHHhhhcCCCceEEEECC
Confidence 58999999999999999999987 34566666632 223344445 4589999994
No 96
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=68.74 E-value=4.6 Score=32.70 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=36.4
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh---c-CCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK---N-RVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk---~-~v~I~VGTP 153 (160)
.++||+|+++..|..+++.|+.. +..+..+.++ +.-+++.+.++ + ..+|+|+|.
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~~-~~~~~r~~~~~~f~~g~~~vlv~T~ 338 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHGD-MDQKERDVIMREFRSGSSRVLITTD 338 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTT--TCCCEEC----CHHHHHHHHHHHHSCC---CEEECS
T ss_pred CcEEEEeCCHHHHHHHHHHHHhc--CCeEEEecCC-CCHHHHHHHHHHHHcCCCcEEEECC
Confidence 47999999999999999999875 3445666665 56656555553 3 478999985
No 97
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=67.40 E-value=8.7 Score=32.35 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=40.0
Q ss_pred eEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh---c-CCcEEEeCC
Q 031382 98 AVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK---N-RVNFAGGTP 153 (160)
Q Consensus 98 ~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk---~-~v~I~VGTP 153 (160)
.+||.|+|...|-.+++.|+.. +..+..+.|. +.-++..+.++ + ..+|+|+|.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~-~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK--EFPTTSIHGD-RLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT--TCCEEEESTT-SCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred CEEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCC-CCHHHHHHHHHHHHcCCCcEEEEch
Confidence 3999999999999999999876 3445666665 56666655553 3 579999995
No 98
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=70.29 E-value=1.2 Score=32.85 Aligned_cols=55 Identities=20% Similarity=0.159 Sum_probs=39.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---h-cCCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---K-NRVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k-~~v~I~VGTP 153 (160)
..++||.|++...|..+++.|+.. +..+.-+.++ +.-++..+.+ + ..++|.|+|.
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~-~~~~~r~~~~~~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA--GINNCYLEGE-MVQGKRNEAIKRLTEGRVNVLVATD 88 (170)
Confidence 357999999999999999999876 3345666654 5555544444 3 2468888884
No 99
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=66.15 E-value=5.4 Score=36.65 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=39.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhc-CCcEEEeC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKN-RVNFAGGT 152 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~-~v~I~VGT 152 (160)
..++||+|+|+..|-++++.|+.. +.++..|.++ .-++.++..++ .++|+|+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~--eR~~v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRK--SYDTEYPKCKNGDWDFVITT 463 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSS--SHHHHGGGGGTCCCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChH--HHHHHHHHHHCCCceEEEEC
Confidence 458999999999999999999987 4456777664 23333334443 57999999
No 100
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=62.26 E-value=12 Score=34.12 Aligned_cols=53 Identities=15% Similarity=0.074 Sum_probs=38.7
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---hc-CCcEEEeC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---KN-RVNFAGGT 152 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k~-~v~I~VGT 152 (160)
-++||.|+|+.+|-.+++.|+... .++.-+-+ .+.-.++.+.+ +. .++|+|||
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~-~~~~~~R~~~~~~f~~g~~~VLvaT 496 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEHG--IRARYLHH-ELDAFKRQALIRDLRLGHYDCLVGI 496 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTT--CCEEEECT-TCCHHHHHHHHHHHHTTSCSEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHHhcC--CCceeecC-CCCHHHHHHHHHHhhcCCceEEEcc
Confidence 589999999999999999999872 33333433 35666665554 43 48999998
No 101
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=61.80 E-value=8 Score=33.04 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=36.0
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhc-CCcEEEeC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKN-RVNFAGGT 152 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~-~v~I~VGT 152 (160)
.++||.|+|+..|.++++.|+.. +..+..|-++ + -++.++..++ ..+|+|+|
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~--g~~~~~lh~~-~-~~~~~~~f~~g~~~vLVaT 241 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRK-T-FDTEYPKTKLTDWDFVVTT 241 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT--TCCEEEECTT-T-HHHHGGGGGSSCCSEEEEC
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc--CCeEEECCHH-H-HHHHHHhhccCCceEEEEC
Confidence 37999999999999999999876 3344555443 1 1233333443 47999998
No 102
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=61.70 E-value=14 Score=33.50 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=39.2
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---h-cCCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---K-NRVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k-~~v~I~VGTP 153 (160)
.++||.|+|..+|-.+++.|+.. +.++.-+-+ .+.-.+..+.+ + ..++|+|||-
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~-~~~~~~R~~~l~~f~~g~~~VLVaT~ 503 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI--GIKVNYLHS-EIKTLERIEIIRDLRLGKYDVLVGIN 503 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT--TCCEEEECT-TCCHHHHHHHHHHHHHTSCSEEEESC
T ss_pred CeEEEEECCHHHHHHHHHHHHhc--CCCeEEEeC-CCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 58999999999999999999987 333333443 35656665554 4 3589999983
No 103
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=61.15 E-value=4.9 Score=36.43 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhh
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
+.+++|||+|++++|.|+.+.++.+
T Consensus 214 ~~~~vLvl~PtreLa~Qi~~~l~~~ 238 (618)
T 2whx_A 214 RRLRTLILAPTRVVAAEMEEALRGL 238 (618)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCeEEEEcChHHHHHHHHHHhcCC
Confidence 3489999999999999999998754
No 104
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=60.18 E-value=8.8 Score=34.74 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=38.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh-cCCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK-NRVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk-~~v~I~VGTP 153 (160)
.++||.|+|+..|..+++.|+.. +.+++.+.++ .-++.++..+ ...+|+|+|.
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~--~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRK--TFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT--THHHHTTHHHHSCCSEEEECG
T ss_pred CCEEEEECChhHHHHHHHHHHHc--CCcEEEEChH--HHHHHHHhhcCCCcEEEEECc
Confidence 47999999999999999999987 3445666654 2333444445 3579999995
No 105
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=59.04 E-value=15 Score=33.95 Aligned_cols=54 Identities=9% Similarity=0.098 Sum_probs=41.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHH---HHHHHHhc--C-CcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVE---EQVSLLKN--R-VNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~---eQi~~Lk~--~-v~I~VGTP 153 (160)
+..+|+|.|+..+-++++.|+.. +..|+-++|+ +.-+ +|++..+. | .+|+|+|-
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~--g~~v~~lHG~-L~~~~R~~~~~~F~~~~g~~~VLVATd 380 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIR--GLESAVIYGS-LPPGTKLAQAKKFNDPNDPCKILVATD 380 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT--TCCCEEECTT-SCHHHHHHHHHHHHCTTSSCCEEEECG
T ss_pred CCCEEEEcCHHHHHHHHHHHHhc--CCCeeeeecc-CCHHHHHHHHHHHHccCCCeEEEEeCc
Confidence 44578899999999999999985 4567888887 6766 56666664 4 79999994
No 106
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=58.03 E-value=16 Score=32.78 Aligned_cols=57 Identities=9% Similarity=0.019 Sum_probs=40.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcc----------------------------------cchhhhhccCCCHHHHHHH
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKE----------------------------------CHAVKLFSKHMKVEEQVSL 141 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~----------------------------------~~v~KLFaKh~Ki~eQi~~ 141 (160)
..++||.|+|+..|..+++.|+..... ..|+-+.|+ +.-++|...
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~-l~~~~r~~v 330 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAG-LSKALRDLI 330 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTT-SCHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCC-CCHHHHHHH
Confidence 368999999999999999999864211 124555665 666777666
Q ss_pred Hh----cCCcEEEeCC
Q 031382 142 LK----NRVNFAGGTP 153 (160)
Q Consensus 142 Lk----~~v~I~VGTP 153 (160)
++ ...+|+|+|.
T Consensus 331 ~~~f~~g~~~vlvaT~ 346 (715)
T 2va8_A 331 EEGFRQRKIKVIVATP 346 (715)
T ss_dssp HHHHHTTCSCEEEECG
T ss_pred HHHHHcCCCeEEEECh
Confidence 54 3479999994
No 107
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=57.58 E-value=12 Score=29.06 Aligned_cols=52 Identities=10% Similarity=0.137 Sum_probs=36.5
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---h-cCCcEEEeCC
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---K-NRVNFAGGTP 153 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k-~~v~I~VGTP 153 (160)
....+||.|++...|..+.+.|+.. ..+.++ +.-+++.+.+ + ...+|+|+|.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~-~~~~~r~~~~~~f~~~~~~vlv~T~ 274 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFDNA------IELRGD-LPQSVRNRNIDAFREGEYDMLITTD 274 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCTTE------EEECTT-SCHHHHHHHHHHHHTTSCSEEEECH
T ss_pred CCCcEEEEEcCHHHHHHHHHHhhhh------hhhcCC-CCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 4567999999999999998877732 334343 5655555555 3 3579999984
No 108
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=55.74 E-value=12 Score=30.22 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=38.4
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhcc-------CCCHHHHHHHH---h-cCCcEEEeC
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSK-------HMKVEEQVSLL---K-NRVNFAGGT 152 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaK-------h~Ki~eQi~~L---k-~~v~I~VGT 152 (160)
....+||.|+++.-+..+.+.|+.. +..+..+.|. .+..+++.+.+ + ..++|+|+|
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T 426 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT 426 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC
Confidence 4568999999999999999999876 3445556551 24444444444 3 357999999
No 109
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=55.25 E-value=7.4 Score=33.09 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
.+++||++||+++|.|+.+.++.+
T Consensus 31 g~~~lvl~Pt~~La~Q~~~~~~~~ 54 (431)
T 2v6i_A 31 RLRTVILAPTRVVASEMYEALRGE 54 (431)
T ss_dssp TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCEEEECcHHHHHHHHHHHhCCC
Confidence 479999999999999999988754
No 110
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=55.17 E-value=17 Score=29.74 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=36.0
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchh-hhhccCCCHHHHHHHHhc-CCcEEEeC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAV-KLFSKHMKVEEQVSLLKN-RVNFAGGT 152 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~-KLFaKh~Ki~eQi~~Lk~-~v~I~VGT 152 (160)
.++||.|+|+..|..+++.|+.. +..+. -+-++ +++++..++ .++|+|+|
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~h~~----~r~~~~f~~g~~~vLvat 304 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF--KFNVGETWSEF----EKNFEDFKVGKINILIGV 304 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT--TCCEEESSSCH----HHHHHHHHTTSCSEEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc--CCceehhhcCc----chHHHHHhCCCCeEEEEe
Confidence 68999999999999999999886 33344 33332 333666664 58999993
No 111
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=54.95 E-value=10 Score=33.56 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=41.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh---h-cccchhhhhccC-------CCHHHHHHHHh---c-CCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL---T-KECHAVKLFSKH-------MKVEEQVSLLK---N-RVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~---~-k~~~v~KLFaKh-------~Ki~eQi~~Lk---~-~v~I~VGTP 153 (160)
...+||.|+++..|-.+++.|+.. . .+.++.-+.|.+ +.-+++.+.++ + .++|+|+|-
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~ 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc
Confidence 578999999999999999999864 1 134556666653 78888887775 3 478999984
No 112
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=54.34 E-value=6.4 Score=35.63 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=28.0
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhc--ccchhhhhcc
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTK--ECHAVKLFSK 131 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k--~~~v~KLFaK 131 (160)
++++|+|||++.+.|+.++++.+.+ ..+++-|+|+
T Consensus 52 ~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 52 LKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCH
T ss_pred CeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEECC
Confidence 6899999999999999999999843 3455555554
No 113
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=53.82 E-value=14 Score=35.96 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=42.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---h-cCCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---K-NRVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k-~~v~I~VGTP 153 (160)
..+++|+|++...|..+++.|+..-.+.++.-+-|+ +.-++..+.+ + ..++|.|+|.
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~-~~~~eR~~il~~F~~g~~~VLVaT~ 872 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ-MRERELERVMNDFHHQRFNVLVCTT 872 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSS-CCHHHHHHHHHHHHTTSCCEEEESS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCC-CCHHHHHHHHHHHHcCCCcEEEECC
Confidence 368999999999999999999987445556666665 6665555444 3 3589999995
No 114
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=53.51 E-value=9.7 Score=35.41 Aligned_cols=57 Identities=7% Similarity=0.084 Sum_probs=44.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh---------hcccchhhhhccCCCHHHHHHHHh--------c-CCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL---------TKECHAVKLFSKHMKVEEQVSLLK--------N-RVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~---------~k~~~v~KLFaKh~Ki~eQi~~Lk--------~-~v~I~VGTP 153 (160)
...+||.++++..|.++++.|+.. ..+..|.-++|. +.-++|.+.++ . ...|+|+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~-l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGS-LPPHQQQRIFEPAPESHNGRPGRKVVISTN 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTT-CCHHHHGGGGSCCCCCSSSSCCEEEEEECT
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCC-CCHHHHHHHHhhcccccCCCCceEEEEeCc
Confidence 458999999999999999999852 134567888886 78888888875 2 358999994
No 115
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=51.56 E-value=3.1 Score=35.18 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---hc-CCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---KN-RVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k~-~v~I~VGTP 153 (160)
..++||.|+|+..|..+++.|+.. +..+.-+.++ +.-+++.+.+ ++ .++|+|||.
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh~~-~~~~~R~~~~~~f~~g~~~iLv~T~ 391 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGE-MMVEQRAAVIERFREGKEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC--CccEEEecCC-CCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 357999999999999999999886 3345556554 4544444444 32 478888884
No 116
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=50.63 E-value=3.3 Score=33.23 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---hc-CCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---KN-RVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k~-~v~I~VGTP 153 (160)
..++||+|+++..|..+++.|+.. +..+..+.++ +.-+++.+.+ ++ ..+|+|+|.
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~-~~~~~r~~~~~~f~~~~~~vlv~T~ 317 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSD-LPQQERDTIMKEFRSGSSRILISTD 317 (394)
T ss_dssp --------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc--CCeEEEeeCC-CCHHHHHHHHHHHHCCCCcEEEECC
Confidence 458999999999999999999875 3345666665 4544444444 32 468888884
No 117
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=48.88 E-value=28 Score=31.25 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=38.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcc-------------------------------cchhhhhccCCCHHHHHHHHh--
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKE-------------------------------CHAVKLFSKHMKVEEQVSLLK-- 143 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~-------------------------------~~v~KLFaKh~Ki~eQi~~Lk-- 143 (160)
.++||.|+|+..|..+++.|...... ..|+-+.|+ +.-+++...++
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~-l~~~~R~~v~~~f 316 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG-LGRDERVLVEENF 316 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTT-SCHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCC-CCHHHHHHHHHHH
Confidence 68999999999999999998864111 013445554 56666655543
Q ss_pred -c-CCcEEEeCC
Q 031382 144 -N-RVNFAGGTP 153 (160)
Q Consensus 144 -~-~v~I~VGTP 153 (160)
+ .++|+|+|.
T Consensus 317 ~~g~~~vlvaT~ 328 (720)
T 2zj8_A 317 RKGIIKAVVATP 328 (720)
T ss_dssp HTTSSCEEEECS
T ss_pred HCCCCeEEEECc
Confidence 3 479999995
No 118
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=46.18 E-value=15 Score=33.43 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=21.4
Q ss_pred EEEEcCchhhHHHHHHHHhhhhc
Q 031382 99 VLIISSSALRSIELLKGLRSLTK 121 (160)
Q Consensus 99 ~lIl~~Sa~ra~dv~r~l~~~~k 121 (160)
+|||+++..+|.|++.+|+.|-+
T Consensus 56 ~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 56 ALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp EEEEESSHHHHHHHHHHHHHHCT
T ss_pred EEEEecCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999943
No 119
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=46.06 E-value=33 Score=30.73 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=39.0
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcc----------------------------cchhhhhccCCCHHHHHHHHh----c
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKE----------------------------CHAVKLFSKHMKVEEQVSLLK----N 144 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~----------------------------~~v~KLFaKh~Ki~eQi~~Lk----~ 144 (160)
.++||.|+|+..|..+++.|...... ..|+-+.|+ +.-+++....+ .
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~-l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG-LLNGQRRVVEDAFRRG 321 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT-SCHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC-CCHHHHHHHHHHHHCC
Confidence 57999999999999999988764110 124445555 56666655553 3
Q ss_pred CCcEEEeCC
Q 031382 145 RVNFAGGTP 153 (160)
Q Consensus 145 ~v~I~VGTP 153 (160)
..+|+|+|.
T Consensus 322 ~~~vlvaT~ 330 (702)
T 2p6r_A 322 NIKVVVATP 330 (702)
T ss_dssp SCCEEEECS
T ss_pred CCeEEEECc
Confidence 479999995
No 120
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=44.24 E-value=26 Score=32.30 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=40.4
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh------------cCCcEEEeCCCcee
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK------------NRVNFAGGTPSRLV 157 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk------------~~v~I~VGTPgRl~ 157 (160)
..+|||||.. ...|-.+++..+..+.++.-+.+. .+..+.+.... ...+|+|.|++.+.
T Consensus 287 ~~~LIV~P~s-ll~qW~~E~~~~~p~~~v~~~~g~-~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~ 357 (800)
T 3mwy_W 287 GPHIIVVPLS-TMPAWLDTFEKWAPDLNCICYMGN-QKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYIL 357 (800)
T ss_dssp SCEEEECCTT-THHHHHHHHHHHSTTCCEEECCCS-SHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHH
T ss_pred CCEEEEECch-HHHHHHHHHHHHCCCceEEEEeCC-HHHHHHHHHHHhhccccccccccccCCEEEecHHHHH
Confidence 4579999954 577889999998666666655554 34455544432 25689999998763
No 121
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=44.23 E-value=12 Score=34.63 Aligned_cols=53 Identities=21% Similarity=0.130 Sum_probs=38.2
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCC
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTP 153 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTP 153 (160)
...++||.|+|+..|.++++.|+.. +.++.-+.|+ +.-++ .-+.+.+|+|+|.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~-l~q~e---r~~~~~~VLVATd 447 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRG-LDVSV---IPTIGDVVVVATD 447 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTT-SCGGG---SCSSSCEEEEECT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCC-CCHHH---HHhCCCcEEEECC
Confidence 3458999999999999999999986 3455666665 44332 2235679999994
No 122
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=43.66 E-value=6.5 Score=33.73 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=35.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhc-CCcEEEeCC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKN-RVNFAGGTP 153 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~-~v~I~VGTP 153 (160)
.++||.|+|+..|-.+++.|+.. +.++..|-++. -++.++..++ ..+|+|+|-
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~~--R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRKS--YDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTTC--CCCCGGGSSSCCCSEEEESS
T ss_pred CCEEEEeCChHHHHHHHHHHHhc--CCcEEecCHHH--HHHHHhhccCCCceEEEECC
Confidence 57999999999999999999886 33445554431 1111222333 478999983
No 123
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=43.49 E-value=15 Score=32.29 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=22.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
.++++|+|||++++.|+.++++.+
T Consensus 51 ~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 51 KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 379999999999999999999987
No 124
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=34.77 E-value=5.4 Score=34.51 Aligned_cols=55 Identities=7% Similarity=0.022 Sum_probs=35.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHH---HHHHHh-cCCcEEEeCC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEE---QVSLLK-NRVNFAGGTP 153 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~e---Qi~~Lk-~~v~I~VGTP 153 (160)
..++||.|+++..|..+++.|+.. +..+..+.++ +.-++ .++..+ ...+|+|||-
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~--~~~v~~~hg~-~~~~~R~~il~~f~~g~~~VLVaT~ 415 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD--GHTVACLTGN-LEGAQRDAIMDSFRVGTSKVLVTTN 415 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT--TCCCCEEC------CTTGGGTHHHHSSSCCCCEECC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC--CCcEEEEeCC-CCHHHHHHHHHHHHCCCCeEEEeCC
Confidence 357999999999999999999875 3334555544 33222 233344 3578888884
No 125
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=34.42 E-value=24 Score=31.03 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=30.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhh--cccchhhhhc-------cCCCHHHHHHHHh---c-C-CcEEEeC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLT--KECHAVKLFS-------KHMKVEEQVSLLK---N-R-VNFAGGT 152 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~--k~~~v~KLFa-------Kh~Ki~eQi~~Lk---~-~-v~I~VGT 152 (160)
..++||.|+++..|-.+++.|+... ...++..+.| +.+..++|.+.++ + | ++|+|+|
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT 468 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 468 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe
Confidence 4579999999999999999998752 1244555654 1356667776664 3 3 6888888
No 126
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=33.69 E-value=47 Score=28.84 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=22.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
..++||+|.++..|..+++.|+..
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~ 462 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNL 462 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHh
Confidence 478999999999999999999876
No 127
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=30.35 E-value=39 Score=32.45 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=38.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHhc-CCcEEEeC
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKN-RVNFAGGT 152 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk~-~v~I~VGT 152 (160)
..++||.|+|+..|.++++.|+.. .++.-+.+. +++.++..++ .++|+|||
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg~---~~~~l~~F~~G~~~VLVaT 326 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK---FRIGIVTAT---KKGDYEKFVEGEIDHLIGT 326 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS---SCEEECTTS---SSHHHHHHHHTSCSEEEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc---cCeeEEecc---HHHHHHHHHcCCCcEEEEe
Confidence 367999999999999999999875 445555554 3566666764 57999994
No 128
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=27.94 E-value=51 Score=29.53 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=35.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhhhcc-cchhhhhccCCC-HHHHHH-HHhc-----CCcEEEeCCCce
Q 031382 96 SPAVLIISSSALRSIELLKGLRSLTKE-CHAVKLFSKHMK-VEEQVS-LLKN-----RVNFAGGTPSRL 156 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~~k~-~~v~KLFaKh~K-i~eQi~-~Lk~-----~v~I~VGTPgRl 156 (160)
...+|||||+ .+..|-.++++.|.+. ..++.++++.-+ ..+.+. ++.. ..+|+|.|++.+
T Consensus 114 ~~~~LiV~P~-sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l 181 (644)
T 1z3i_X 114 IDKVIVVSPS-SLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETF 181 (644)
T ss_dssp CSCEEEEECH-HHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHH
T ss_pred CCcEEEEecH-HHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHH
Confidence 4569999997 5677889999998432 334444443111 122222 2222 368999998754
No 129
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=26.41 E-value=72 Score=26.48 Aligned_cols=59 Identities=14% Similarity=0.015 Sum_probs=31.5
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhh--cccchhhhhc-------cCCCHHHHHHHHh---c-C-CcEEEeCC
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLT--KECHAVKLFS-------KHMKVEEQVSLLK---N-R-VNFAGGTP 153 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~--k~~~v~KLFa-------Kh~Ki~eQi~~Lk---~-~-v~I~VGTP 153 (160)
....+||.|+++..|-.+.+.|+... ...++..+.| +.+..+++.+.++ + | ++|.|+|.
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~ 460 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS 460 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc
Confidence 34789999999999999999998752 1122222322 1355566666663 3 4 69999994
No 130
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A 3qna_A*
Probab=24.74 E-value=36 Score=25.16 Aligned_cols=30 Identities=7% Similarity=0.209 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCCCcccccc
Q 031382 16 ASASASEQLSFFLNEFQSANGIQLSSLELES 46 (160)
Q Consensus 16 ~~~sp~~~a~~l~~~~~~~~~~~LS~lELed 46 (160)
..-+.|.+|.||.+++++..+ .|..|++.|
T Consensus 98 ~~pTaEnlA~~i~~~L~~~lp-~l~~V~v~E 127 (138)
T 2oba_A 98 ENPTSENLCRWIWQQLKPLLP-ELSKVRVHE 127 (138)
T ss_dssp SSCCHHHHHHHHHHHHGGGCT-TEEEEEEES
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CeEEEEEEE
Confidence 356899999999999998875 566666655
No 131
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=24.68 E-value=80 Score=30.67 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhh
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
+...+||.|+|+..|-.+++.|..+
T Consensus 440 ~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 440 KYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp TCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 3457999999999999999998874
No 132
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=24.55 E-value=72 Score=26.64 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=30.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhhhh--cccchhhhhcc-------CCCHHHHHHHHh---c-C-CcEEEeCC
Q 031382 95 GSPAVLIISSSALRSIELLKGLRSLT--KECHAVKLFSK-------HMKVEEQVSLLK---N-R-VNFAGGTP 153 (160)
Q Consensus 95 ~sP~~lIl~~Sa~ra~dv~r~l~~~~--k~~~v~KLFaK-------h~Ki~eQi~~Lk---~-~-v~I~VGTP 153 (160)
...++||.|.++..|-.+.+.|+... ...++..+.|. .+.-+++.+.++ + | ++|.|+|-
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~ 461 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 461 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC
Confidence 45789999999999999999998751 11222222221 256666666664 4 4 79999984
No 133
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=23.77 E-value=2.4e+02 Score=23.98 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
...+++.|.+..|+...++.|+..
T Consensus 524 ~~~iv~~c~~g~rs~~a~~~l~~~ 547 (565)
T 3ntd_A 524 DKEIIIFSQVGLRGNVAYRQLVNN 547 (565)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHHT
T ss_pred cCeEEEEeCCchHHHHHHHHHHHc
Confidence 456889999999999999999876
No 134
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=23.07 E-value=37 Score=27.43 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=11.2
Q ss_pred HhcCCcEEEeCCC
Q 031382 142 LKNRVNFAGGTPS 154 (160)
Q Consensus 142 Lk~~v~I~VGTPg 154 (160)
++.|++++|||||
T Consensus 93 ~~~G~~vVigTtG 105 (273)
T 1dih_A 93 RQHGKGMVIGTTG 105 (273)
T ss_dssp HHTTCEEEECCCC
T ss_pred HhCCCCEEEECCC
Confidence 4579999999997
No 135
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=22.35 E-value=36 Score=27.28 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=7.8
Q ss_pred HhcCCcEEEeCCC
Q 031382 142 LKNRVNFAGGTPS 154 (160)
Q Consensus 142 Lk~~v~I~VGTPg 154 (160)
++.|++++|||+|
T Consensus 73 l~~g~~vVigTTG 85 (243)
T 3qy9_A 73 EDFHLPLVVATTG 85 (243)
T ss_dssp SCCCCCEEECCCS
T ss_pred HhcCCceEeCCCC
Confidence 4456666666665
No 136
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=22.27 E-value=1e+02 Score=21.19 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=34.2
Q ss_pred CeEEEEcCchhhHHHHHH-HHhhhhcc--cchhhhhccCCCHHHHHHHHhcCCcEEEeCCC
Q 031382 97 PAVLIISSSALRSIELLK-GLRSLTKE--CHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPS 154 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r-~l~~~~k~--~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPg 154 (160)
..+|++|+++.-.-.+.. .+++.-++ ...+.+ .+..+.+--..+ ..+++++-||.
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i--~~~~~~~~~~~~-~~~DlIi~t~~ 76 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVSDIES--ASCSVGEAKGLA-SNYDIVVASNH 76 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEE--EEECHHHHHHHG-GGCSEEEEETT
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEE--EEeeHHHHhhcc-CCCcEEEECCc
Confidence 579999999988887776 66664221 110122 234566544443 46899998875
No 137
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=22.23 E-value=1.5e+02 Score=24.90 Aligned_cols=53 Identities=2% Similarity=0.021 Sum_probs=34.3
Q ss_pred CeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHH---h-cCCcEEEeC
Q 031382 97 PAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLL---K-NRVNFAGGT 152 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~L---k-~~v~I~VGT 152 (160)
.+.+|++.+...|.++.+.|+.... ++..+-|+ +.-++..+.+ + ..++|+|+|
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~~~--~v~~~~g~-~~~~~r~~i~~~f~~g~~~vLv~T 404 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNEYD--KVYYVSGE-VDTETRNIMKTLAENGKGIIIVAS 404 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTCS--SEEEESSS-TTHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CCeEEEEecHHHHHHHHHHHHHcCC--CeEEEECC-CCHHHHHHHHHHHhCCCCCEEEEE
Confidence 3455555568888888888887632 45555554 5655544444 3 357999999
No 138
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=22.10 E-value=62 Score=25.88 Aligned_cols=18 Identities=17% Similarity=0.025 Sum_probs=8.1
Q ss_pred CeEEEEcCchhhHHHHHH
Q 031382 97 PAVLIISSSALRSIELLK 114 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r 114 (160)
+.++|=+.+.+-..+..+
T Consensus 46 ~DvvIDfT~p~a~~~~~~ 63 (245)
T 1p9l_A 46 TEVVIDFTHPDVVMGNLE 63 (245)
T ss_dssp CCEEEECSCTTTHHHHHH
T ss_pred CcEEEEccChHHHHHHHH
Confidence 445554444444444443
No 139
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=21.95 E-value=1.1e+02 Score=23.04 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=35.1
Q ss_pred CCCCCeEEEEcCchh-------hHHHHHHHHhh----hhcccchhhhhccCCCHHHHHHHHhcCCcEEEeCCC
Q 031382 93 DPGSPAVLIISSSAL-------RSIELLKGLRS----LTKECHAVKLFSKHMKVEEQVSLLKNRVNFAGGTPS 154 (160)
Q Consensus 93 ~~~sP~~lIl~~Sa~-------ra~dv~r~l~~----~~k~~~v~KLFaKh~Ki~eQi~~Lk~~v~I~VGTPg 154 (160)
..|+-.+|||..+-- ....+++.+.. -.-+..++.|..+ ..+++.++.|+.-=.|+++||-
T Consensus 9 ~~~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~-~d~~~~~~~l~~AD~iV~~~P~ 80 (204)
T 2amj_A 9 HHGSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSD-YDVKAEVQNFLWADVVIWQMPG 80 (204)
T ss_dssp ---CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSC-CCHHHHHHHHHHCSEEEEEEEC
T ss_pred ccCCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCcc-ccHHHHHHHHHhCCEEEEECCc
Confidence 357777777765543 23334433333 2224556666543 5788888888766679999984
No 140
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=20.98 E-value=29 Score=32.94 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhhhhcccchhhhhccCCCHHHHHHHHh--cCCcEEEeCCCce
Q 031382 93 DPGSPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLK--NRVNFAGGTPSRL 156 (160)
Q Consensus 93 ~~~sP~~lIl~~Sa~ra~dv~r~l~~~~k~~~v~KLFaKh~Ki~eQi~~Lk--~~v~I~VGTPgRl 156 (160)
.....++|||||+ .++.|-.+++...-+-. +.+|......+....... ...+|+|+|++.+
T Consensus 197 ~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~--v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L 259 (968)
T 3dmq_A 197 SGAAERVLIIVPE-TLQHQWLVEMLRRFNLR--FALFDDERYAEAQHDAYNPFDTEQLVICSLDFA 259 (968)
T ss_dssp TSSCCCEEEECCT-TTHHHHHHHHHHHSCCC--CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHH
T ss_pred hCCCCeEEEEeCH-HHHHHHHHHHHHHhCCC--EEEEccchhhhhhhhcccccccCCEEEEcHHHH
No 141
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=20.48 E-value=1.1e+02 Score=19.30 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhhh
Q 031382 96 SPAVLIISSSALRSIELLKGLRSL 119 (160)
Q Consensus 96 sP~~lIl~~Sa~ra~dv~r~l~~~ 119 (160)
.-.++|+|.+..|+...++.|+..
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~ 64 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEM 64 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHT
T ss_pred CCcEEEEcCCCchHHHHHHHHHHc
Confidence 356899999999999999999886
No 142
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=20.47 E-value=1e+02 Score=29.50 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=19.7
Q ss_pred CeEEEEcCchhhHHHHHHHHhh
Q 031382 97 PAVLIISSSALRSIELLKGLRS 118 (160)
Q Consensus 97 P~~lIl~~Sa~ra~dv~r~l~~ 118 (160)
-.+||.|+|+..|-+++..|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~ 358 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEG 358 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTT
T ss_pred CCEEEEECCHHHHHHHHHHHhc
Confidence 4799999999999999998876
Done!