BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031383
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 100 VGC------GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153
VGC GD KDVIC V+++ D LV+GS G G ++ +G+VS +C KH +CPV
Sbjct: 101 VGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVXT 160
Query: 154 VKH 156
+K
Sbjct: 161 IKR 163
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 66 KAVEKYASESVNSVMNRAEAVYRNFQNNIH-----VKRVVGCGDAKDVICGTVEKLEADT 120
K+VE++ +E N + A+ N + + VK ++ G + I E D
Sbjct: 64 KSVEEFENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDI 123
Query: 121 LVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156
++MGSHG +K LLGSV++ K PV++VK
Sbjct: 124 IIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKR 159
>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
Thermus Themophilus Hb8
pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 137
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 69 EKYASESVNSVMNRAEAVYRNFQNNIHVKR---VVGCGDAKDVICGTVEKLEADTLVMGS 125
E + E++ + RAE V + V + ++ G + I +AD +VMG+
Sbjct: 48 EPFFEEALRRRLERAEGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGT 107
Query: 126 HGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155
G G + LGS S CPV++V+
Sbjct: 108 RGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137
>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
Length = 170
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 69 EKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128
EK E+ + +AE V R F+ +V+ ++ G D I E+ +++ S G
Sbjct: 70 EKLKEEASRKLQEKAEEVKRAFRAK-NVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGK 128
Query: 129 GFIKRALLGSVSDYCAKHVKCPVVIVKHPEEN 160
+ LGS + K PV+I+K +EN
Sbjct: 129 LSLSHEFLGSTVMRVLRKTKKPVLIIKEVDEN 160
>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
Length = 309
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 117 EADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV-------KHPEE 159
+A +V+G G G LLGSVS +H CPVVI+ HP++
Sbjct: 122 DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVMPHPQQ 171
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 117 EADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155
EA +V+GS G G L+GSV + A+ + PV++ +
Sbjct: 267 EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVAR 305
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 67 AVEKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126
A++ YA+E RA + V+ V G I K E D +V+G+
Sbjct: 63 ALKDYATEIAVQAKTRATELGVPADK---VRAFVKGGRPSRTIVRFARKRECDLVVIGAQ 119
Query: 127 GYGFIKRALLGSVSDYCAKHVKCPVVIV 154
G K LLGSV+ A CPV++V
Sbjct: 120 GTNGDKSLLLGSVAQRVAGSAHCPVLVV 147
>pdb|3FH0|A Chain A, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
pdb|3FH0|B Chain B, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
Length = 144
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 100 VGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155
V G KD I + L AD +++ SH I LLGS + +H +C V++V+
Sbjct: 90 VAEGSPKDKILALAKSLPADLVIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 144
>pdb|3FDX|A Chain A, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae.
pdb|3FDX|B Chain B, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae
Length = 143
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 100 VGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155
V G KD I + L AD +++ SH I LLGS + +H +C V++V+
Sbjct: 89 VAEGSPKDKILALAKSLPADLVIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 143
>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
Tuberculosis
Length = 305
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 122 VMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV-------KHPEE 159
V+G G G LLGSVS +H CPVVI+ HP++
Sbjct: 115 VVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVXPHPQQ 159
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 117 EADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155
EA +V+GS G G L+GSV + A+ + PV++ +
Sbjct: 255 EAQLVVVGSRGRGGYAGXLVGSVGETVAQLARTPVIVAR 293
>pdb|3OLQ|A Chain A, The Crystal Structure Of A Universal Stress Protein E From
Proteus Mirabilis Hi4320
Length = 319
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154
HVK G + VI E+L A +V+G G + A LG+ ++ H+KC ++ +
Sbjct: 248 HVKE----GLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAI 303
Query: 155 K 155
K
Sbjct: 304 K 304
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 117 EADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155
E D +V+G+ G R +GS + Y H C V++++
Sbjct: 108 EIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146
>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
Length = 294
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 121 LVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156
+ GS G K+ LLGSVS+ K PV I KH
Sbjct: 127 IAXGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKH 162
>pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
Length = 163
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 92 NNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPV 151
N+ + +VG D + ++ +AD LV+G+ G I LLGSV ++ K V
Sbjct: 96 KNVEERPIVGA--PVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDV 153
Query: 152 VIVKHPE 158
+IV E
Sbjct: 154 LIVHTTE 160
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea With Amp Bound
Length = 150
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 98 RVVGCGDAKDVICGTVEKLEADTLVMGSHG-YGFIKRALLGSVSDYCAKHVKCPVVIVK 155
R + G+ ++ I E+ D +V+GSHG +G LLGS ++ + KC V+ V+
Sbjct: 90 RWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGL--ALLLGSTANSVLHYAKCDVLAVR 146
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea
Length = 150
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 98 RVVGCGDAKDVICGTVEKLEADTLVMGSHG-YGFIKRALLGSVSDYCAKHVKCPVVIVK 155
R + G+ ++ I E+ D +V+GSHG +G LLGS ++ + KC V+ V+
Sbjct: 90 RWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGL--ALLLGSTANSVLHYAKCDVLAVR 146
>pdb|1JMV|A Chain A, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|B Chain B, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|C Chain C, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|D Chain D, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
Length = 141
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 69 EKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126
++ ++E+ ++++ AE+V +++ G GD V+ +E+ + D LV G H
Sbjct: 59 DRISTETQKALLDLAESVDYPIS-----EKLSGSGDLGQVLSDAIEQYDVDLLVTGHH 111
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 50 HSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI 109
H +FD ++ DV+K V Y++ ++++R N + G G DV
Sbjct: 73 HPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNL-------VIEGTGRTTDVP 125
Query: 110 CGTVEKLEADTLVMGSHGYGFIK-RALLGSVSDYCAKHVKCPVVIVKHPEE 159
T L+A + K + LG++ Y + P+ P++
Sbjct: 126 IQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQ 176
>pdb|1SXE|A Chain A, The Solution Structure Of The Pointed (Pnt) Domain From
The Transcrition Factor Erg
Length = 97
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 1 MNTNERRVVVAVDESEESM----HALSWCLNNLFSPDTN 35
M TNERRV+V D + S L W + PD N
Sbjct: 14 MTTNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVN 52
>pdb|1TPW|A Chain A, Triosephosphate Isomerase Drinks Water To Keep Healthy
pdb|1TPW|B Chain B, Triosephosphate Isomerase Drinks Water To Keep Healthy
Length = 247
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 107 DVICGTV--------EKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158
+V+CG +KL+A V + Y K A G +S K + VI+ HPE
Sbjct: 37 EVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHPE 96
>pdb|1TPC|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble
pdb|1TPC|2 Chain 2, Offset Of A Catalytic Lesion By A Bound Water Soluble
Length = 247
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 107 DVICGTV--------EKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158
+V+CG +KL+A V + Y K A G +S K + VI+ HPE
Sbjct: 37 EVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHPE 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,376,554
Number of Sequences: 62578
Number of extensions: 152086
Number of successful extensions: 370
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 25
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)