Query 031383
Match_columns 160
No_of_seqs 106 out of 1050
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 13:19:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15456 universal stress prot 100.0 1.7E-28 3.7E-33 160.2 15.8 139 5-155 2-142 (142)
2 PRK15005 universal stress prot 100.0 2.1E-27 4.5E-32 155.3 16.0 141 5-155 2-144 (144)
3 cd01989 STK_N The N-terminal d 100.0 8.6E-27 1.9E-31 152.7 16.8 141 7-156 1-145 (146)
4 PRK09982 universal stress prot 99.9 5.3E-27 1.1E-31 153.1 12.6 139 4-157 2-140 (142)
5 PRK15118 universal stress glob 99.9 1.6E-25 3.4E-30 146.4 14.0 139 4-158 2-141 (144)
6 PF00582 Usp: Universal stress 99.9 2.7E-25 5.8E-30 143.5 14.0 139 5-155 2-140 (140)
7 PRK10116 universal stress prot 99.9 4.3E-25 9.4E-30 144.0 15.0 139 4-158 2-141 (142)
8 cd01988 Na_H_Antiporter_C The 99.9 2.3E-24 4.9E-29 138.7 15.7 131 7-155 1-132 (132)
9 PRK11175 universal stress prot 99.9 7E-24 1.5E-28 154.3 15.1 145 4-157 2-147 (305)
10 cd01987 USP_OKCHK USP domain i 99.9 5.4E-24 1.2E-28 135.8 11.6 123 7-155 1-124 (124)
11 PRK11175 universal stress prot 99.9 2.8E-22 6.2E-27 145.9 13.9 142 4-157 151-301 (305)
12 cd00293 USP_Like Usp: Universa 99.9 4.2E-21 9E-26 122.5 15.6 130 7-154 1-130 (130)
13 COG0589 UspA Universal stress 99.9 2.8E-20 6E-25 122.3 17.4 150 1-157 1-153 (154)
14 PRK12652 putative monovalent c 99.7 6.4E-16 1.4E-20 113.7 14.8 131 1-150 1-145 (357)
15 PRK10490 sensor protein KdpD; 99.5 1.7E-13 3.7E-18 112.2 13.6 124 5-157 250-375 (895)
16 COG2205 KdpD Osmosensitive K+ 99.5 7.5E-13 1.6E-17 104.2 12.0 127 6-159 249-377 (890)
17 cd01984 AANH_like Adenine nucl 98.8 5.9E-08 1.3E-12 57.6 7.0 84 8-153 1-85 (86)
18 PLN03159 cation/H(+) antiporte 98.4 6.3E-06 1.4E-10 67.8 11.7 148 6-156 459-615 (832)
19 PLN03159 cation/H(+) antiporte 97.9 0.00034 7.4E-09 57.9 12.0 145 5-156 630-794 (832)
20 TIGR02432 lysidine_TilS_N tRNA 97.6 0.0031 6.7E-08 42.9 11.1 94 7-129 1-111 (189)
21 PF01171 ATP_bind_3: PP-loop f 97.3 0.0083 1.8E-07 40.6 10.8 98 7-133 1-112 (182)
22 cd01992 PP-ATPase N-terminal d 97.1 0.018 4E-07 38.9 10.7 94 7-129 1-108 (185)
23 PRK10696 tRNA 2-thiocytidine b 96.7 0.058 1.3E-06 38.7 11.2 100 2-131 26-145 (258)
24 cd01993 Alpha_ANH_like_II This 96.4 0.085 1.8E-06 35.5 9.8 96 7-129 1-118 (185)
25 COG0041 PurE Phosphoribosylcar 96.3 0.048 1E-06 35.6 7.7 70 79-158 17-90 (162)
26 COG0037 MesJ tRNA(Ile)-lysidin 96.2 0.057 1.2E-06 39.4 8.8 99 6-133 22-136 (298)
27 PRK12342 hypothetical protein; 95.2 0.19 4.2E-06 36.0 8.0 86 13-129 32-121 (254)
28 PRK14665 mnmA tRNA-specific 2- 95.2 0.78 1.7E-05 34.7 11.4 39 1-45 1-39 (360)
29 TIGR01162 purE phosphoribosyla 95.2 0.24 5.1E-06 32.7 7.6 69 79-157 13-85 (156)
30 PF01012 ETF: Electron transfe 95.2 0.56 1.2E-05 31.1 9.9 87 7-127 1-100 (164)
31 TIGR00591 phr2 photolyase PhrI 95.1 0.53 1.1E-05 36.7 10.7 91 13-126 32-122 (454)
32 PF00731 AIRC: AIR carboxylase 94.7 0.35 7.7E-06 31.7 7.5 70 79-158 15-88 (150)
33 PF00875 DNA_photolyase: DNA p 94.5 0.45 9.7E-06 31.6 7.8 113 17-155 12-124 (165)
34 PRK05253 sulfate adenylyltrans 94.2 1.4 3E-05 32.6 10.4 42 5-48 27-68 (301)
35 PRK13820 argininosuccinate syn 94.0 1.8 3.9E-05 33.2 11.0 38 4-46 1-39 (394)
36 PRK10660 tilS tRNA(Ile)-lysidi 94.0 0.66 1.4E-05 36.0 8.8 42 4-47 14-56 (436)
37 TIGR00268 conserved hypothetic 94.0 1.6 3.5E-05 31.2 10.3 36 4-45 11-46 (252)
38 PRK03359 putative electron tra 93.7 0.54 1.2E-05 33.8 7.4 88 13-129 33-124 (256)
39 PF00448 SRP54: SRP54-type pro 93.5 1.6 3.5E-05 30.0 9.2 112 8-154 5-120 (196)
40 COG2086 FixA Electron transfer 93.3 0.8 1.7E-05 33.0 7.7 85 12-128 33-122 (260)
41 TIGR02765 crypto_DASH cryptoch 92.5 3.9 8.4E-05 31.7 11.0 95 13-126 10-105 (429)
42 KOG1650 Predicted K+/H+-antipo 92.1 1.1 2.3E-05 37.5 7.9 43 5-49 614-656 (769)
43 PF02601 Exonuc_VII_L: Exonucl 90.7 1.9 4E-05 32.0 7.4 57 98-154 48-113 (319)
44 PRK14664 tRNA-specific 2-thiou 90.5 6.3 0.00014 29.9 11.5 38 1-44 1-38 (362)
45 cd01995 ExsB ExsB is a transcr 90.1 4 8.7E-05 27.0 9.4 33 7-45 1-33 (169)
46 PF03652 UPF0081: Uncharacteri 89.8 1 2.2E-05 29.0 4.8 64 95-158 27-97 (135)
47 COG1606 ATP-utilizing enzymes 89.7 5.9 0.00013 28.5 10.2 88 5-126 17-122 (269)
48 COG0299 PurN Folate-dependent 89.4 5.3 0.00011 27.5 9.6 82 6-125 1-87 (200)
49 TIGR03556 photolyase_8HDF deox 89.2 4.5 9.8E-05 31.8 8.7 90 13-126 10-99 (471)
50 PF02568 ThiI: Thiamine biosyn 89.0 5.8 0.00012 27.4 10.0 39 5-49 3-41 (197)
51 TIGR02039 CysD sulfate adenyly 88.8 7.7 0.00017 28.6 10.5 43 5-49 19-61 (294)
52 cd05565 PTS_IIB_lactose PTS_II 88.8 1.1 2.4E-05 27.2 4.1 65 79-156 16-80 (99)
53 COG0541 Ffh Signal recognition 88.6 9.4 0.0002 29.7 9.6 96 9-138 105-203 (451)
54 PRK00109 Holliday junction res 88.6 1 2.2E-05 29.1 4.1 54 105-158 42-99 (138)
55 TIGR00853 pts-lac PTS system, 88.3 1.1 2.3E-05 27.0 3.8 66 79-157 19-84 (95)
56 PLN00200 argininosuccinate syn 87.8 11 0.00024 29.1 11.5 39 4-47 4-42 (404)
57 PLN02948 phosphoribosylaminoim 87.6 3.7 8E-05 33.2 7.5 70 78-157 424-497 (577)
58 PRK00286 xseA exodeoxyribonucl 87.2 4.4 9.5E-05 31.5 7.5 60 94-154 165-230 (438)
59 cd01713 PAPS_reductase This do 85.6 7.7 0.00017 25.2 10.5 38 7-47 1-38 (173)
60 PRK00143 mnmA tRNA-specific 2- 85.4 14 0.0003 27.9 10.5 34 6-45 1-34 (346)
61 COG1570 XseA Exonuclease VII, 84.8 8.1 0.00018 30.1 7.6 77 75-154 148-231 (440)
62 cd01990 Alpha_ANH_like_I This 84.7 10 0.00022 25.9 10.3 87 8-128 1-106 (202)
63 cd01712 ThiI ThiI is required 84.5 9.8 0.00021 25.4 11.3 35 7-47 1-35 (177)
64 PRK12563 sulfate adenylyltrans 84.4 15 0.00032 27.4 10.0 43 5-49 37-79 (312)
65 TIGR00237 xseA exodeoxyribonuc 84.3 8.6 0.00019 30.0 7.8 61 94-154 159-225 (432)
66 PRK10867 signal recognition pa 84.0 19 0.0004 28.2 9.9 92 9-133 105-199 (433)
67 PF02844 GARS_N: Phosphoribosy 83.9 0.98 2.1E-05 27.5 2.1 25 102-126 47-71 (100)
68 TIGR00250 RNAse_H_YqgF RNAse H 83.8 2.5 5.5E-05 27.0 4.1 55 104-158 35-93 (130)
69 PRK11914 diacylglycerol kinase 83.6 11 0.00023 27.7 7.8 71 80-159 28-99 (306)
70 TIGR00342 thiazole biosynthesi 83.4 18 0.00039 27.6 11.8 37 4-46 171-207 (371)
71 PRK09590 celB cellobiose phosp 83.2 4.4 9.5E-05 24.9 4.7 67 79-156 17-83 (104)
72 cd05564 PTS_IIB_chitobiose_lic 82.9 3 6.6E-05 25.1 3.9 66 79-157 15-80 (96)
73 TIGR00032 argG argininosuccina 82.6 20 0.00044 27.6 10.3 34 7-46 1-34 (394)
74 PRK05579 bifunctional phosphop 82.3 13 0.00027 28.8 7.9 36 4-42 5-40 (399)
75 PRK11070 ssDNA exonuclease Rec 82.0 21 0.00045 29.1 9.3 93 5-127 69-161 (575)
76 TIGR01425 SRP54_euk signal rec 81.7 23 0.0005 27.7 9.6 94 9-136 105-201 (429)
77 COG1597 LCB5 Sphingosine kinas 81.6 15 0.00032 27.2 7.8 76 74-157 16-92 (301)
78 TIGR02852 spore_dpaB dipicolin 81.5 9.8 0.00021 26.1 6.4 34 6-42 1-35 (187)
79 PRK02929 L-arabinose isomerase 81.5 21 0.00045 28.5 8.9 70 79-156 30-105 (499)
80 TIGR01769 GGGP geranylgeranylg 81.4 3.4 7.4E-05 28.7 4.2 50 108-159 15-64 (205)
81 TIGR00930 2a30 K-Cl cotranspor 81.0 37 0.00079 29.6 12.2 96 6-127 576-677 (953)
82 TIGR02113 coaC_strep phosphopa 80.6 15 0.00033 24.9 7.7 34 6-42 1-34 (177)
83 PRK13982 bifunctional SbtC-lik 80.6 22 0.00047 28.2 8.7 35 5-42 70-104 (475)
84 COG1646 Predicted phosphate-bi 80.5 11 0.00023 26.8 6.3 54 104-159 28-81 (240)
85 PF10087 DUF2325: Uncharacteri 80.0 10 0.00023 22.6 6.5 71 79-157 11-84 (97)
86 cd03557 L-arabinose_isomerase 79.7 26 0.00056 27.9 8.9 49 104-158 49-101 (484)
87 COG0816 Predicted endonuclease 79.2 5.3 0.00011 26.0 4.3 54 105-158 41-98 (141)
88 PRK11889 flhF flagellar biosyn 78.8 28 0.00061 27.2 8.6 55 83-139 288-342 (436)
89 PRK06027 purU formyltetrahydro 77.9 25 0.00054 25.8 9.6 84 4-127 88-175 (286)
90 COG1184 GCD2 Translation initi 77.6 26 0.00057 25.9 11.0 62 85-155 164-228 (301)
91 TIGR00884 guaA_Cterm GMP synth 77.5 27 0.00058 26.0 9.8 37 6-47 17-53 (311)
92 cd00951 KDGDH 5-dehydro-4-deox 77.4 19 0.0004 26.4 7.2 62 94-155 70-132 (289)
93 COG0420 SbcD DNA repair exonuc 77.2 4.3 9.3E-05 30.9 4.1 21 105-125 28-48 (390)
94 PRK08091 ribulose-phosphate 3- 76.7 24 0.00052 25.0 8.5 43 81-126 167-209 (228)
95 cd00408 DHDPS-like Dihydrodipi 76.6 20 0.00044 25.9 7.2 81 74-157 50-132 (281)
96 TIGR02855 spore_yabG sporulati 76.4 13 0.00028 27.1 5.9 47 79-127 116-163 (283)
97 TIGR00583 mre11 DNA repair pro 76.1 6.4 0.00014 30.4 4.7 20 106-125 31-50 (405)
98 PRK06029 3-octaprenyl-4-hydrox 76.0 7 0.00015 26.7 4.4 36 5-42 1-36 (185)
99 cd01985 ETF The electron trans 75.4 22 0.00047 23.9 10.4 23 106-128 80-102 (181)
100 TIGR00521 coaBC_dfp phosphopan 75.2 27 0.00058 26.9 7.8 35 5-42 3-37 (390)
101 PRK08745 ribulose-phosphate 3- 74.7 27 0.00059 24.6 8.6 42 82-126 160-201 (223)
102 PF01884 PcrB: PcrB family; I 74.5 5.8 0.00012 28.1 3.8 52 104-159 19-70 (230)
103 PRK13337 putative lipid kinase 74.4 32 0.00069 25.3 8.7 71 80-158 21-93 (304)
104 COG2876 AroA 3-deoxy-D-arabino 74.3 8.2 0.00018 28.0 4.5 115 8-157 47-161 (286)
105 PRK00074 guaA GMP synthase; Re 73.9 44 0.00096 26.8 9.8 37 6-47 216-252 (511)
106 PRK00919 GMP synthase subunit 73.9 34 0.00074 25.4 7.9 37 6-47 22-58 (307)
107 PRK15424 propionate catabolism 73.7 26 0.00056 28.3 7.6 66 78-157 24-92 (538)
108 PRK04147 N-acetylneuraminate l 73.5 22 0.00048 26.0 6.8 64 94-157 74-139 (293)
109 TIGR02766 crypt_chrom_pln cryp 73.3 44 0.00094 26.4 10.2 86 17-126 11-96 (475)
110 PRK13054 lipid kinase; Reviewe 73.1 34 0.00074 25.1 8.1 67 84-158 24-94 (300)
111 PRK14057 epimerase; Provisiona 73.1 32 0.0007 24.8 8.9 43 81-126 181-223 (254)
112 TIGR00655 PurU formyltetrahydr 73.0 34 0.00074 25.1 10.9 84 4-127 83-170 (280)
113 TIGR00619 sbcd exonuclease Sbc 72.9 6.5 0.00014 28.2 3.8 13 79-91 27-39 (253)
114 cd07044 CofD_YvcK Family of Co 72.5 6.5 0.00014 29.2 3.8 52 104-157 163-215 (309)
115 PRK10674 deoxyribodipyrimidine 72.3 47 0.001 26.3 10.6 92 13-125 11-104 (472)
116 PF05582 Peptidase_U57: YabG p 71.9 20 0.00042 26.3 5.9 47 79-127 117-164 (287)
117 cd02067 B12-binding B12 bindin 71.9 21 0.00045 22.0 6.3 44 82-129 18-62 (119)
118 TIGR00683 nanA N-acetylneurami 71.5 34 0.00074 25.1 7.4 64 94-157 71-137 (290)
119 cd00952 CHBPH_aldolase Trans-o 71.5 35 0.00077 25.2 7.5 65 93-157 77-144 (309)
120 TIGR00420 trmU tRNA (5-methyla 71.3 43 0.00092 25.4 10.2 33 6-44 1-33 (352)
121 PRK13398 3-deoxy-7-phosphohept 71.0 37 0.00081 24.6 10.7 106 16-157 38-143 (266)
122 PRK09722 allulose-6-phosphate 71.0 35 0.00075 24.2 9.1 43 81-126 157-199 (229)
123 PF02887 PK_C: Pyruvate kinase 70.9 12 0.00027 23.1 4.4 42 106-156 5-47 (117)
124 PRK13010 purU formyltetrahydro 70.8 40 0.00086 24.9 9.5 84 4-127 92-179 (289)
125 cd01998 tRNA_Me_trans tRNA met 70.8 43 0.00094 25.3 10.5 33 7-45 1-33 (349)
126 TIGR03249 KdgD 5-dehydro-4-deo 70.7 32 0.00069 25.2 7.1 62 94-155 75-137 (296)
127 PF04459 DUF512: Protein of un 70.7 33 0.00071 23.9 8.3 82 76-158 108-203 (204)
128 COG3340 PepE Peptidase E [Amin 70.6 34 0.00074 24.1 8.1 46 77-126 48-93 (224)
129 cd01714 ETF_beta The electron 70.6 32 0.00069 23.7 7.8 33 10-44 29-61 (202)
130 cd00950 DHDPS Dihydrodipicolin 70.3 28 0.00061 25.3 6.7 64 94-157 70-135 (284)
131 PRK13059 putative lipid kinase 70.2 40 0.00087 24.7 8.4 70 80-158 21-92 (295)
132 TIGR02313 HpaI-NOT-DapA 2,4-di 70.2 38 0.00082 24.9 7.4 63 94-156 70-135 (294)
133 PF03808 Glyco_tran_WecB: Glyc 70.2 25 0.00053 23.6 6.0 69 79-153 60-131 (172)
134 cd00954 NAL N-Acetylneuraminic 70.1 37 0.0008 24.8 7.3 64 94-157 71-137 (288)
135 PRK03620 5-dehydro-4-deoxygluc 69.8 32 0.0007 25.4 7.0 63 94-156 77-140 (303)
136 PF14582 Metallophos_3: Metall 69.2 9.4 0.0002 27.2 3.8 19 141-159 82-100 (255)
137 PF00180 Iso_dh: Isocitrate/is 69.0 32 0.00069 26.1 6.8 79 15-124 159-238 (348)
138 cd00578 L-fuc_L-ara-isomerases 69.0 32 0.0007 26.9 7.2 77 74-158 19-98 (452)
139 PRK13057 putative lipid kinase 68.7 35 0.00076 24.8 7.0 69 80-158 15-84 (287)
140 TIGR02069 cyanophycinase cyano 68.6 41 0.00089 24.2 7.6 94 18-145 13-110 (250)
141 KOG1650 Predicted K+/H+-antipo 68.1 65 0.0014 27.4 9.0 147 6-156 444-599 (769)
142 PRK03170 dihydrodipicolinate s 68.1 40 0.00086 24.6 7.2 80 75-157 55-136 (292)
143 TIGR02329 propionate_PrpR prop 68.0 51 0.0011 26.6 8.1 65 79-157 15-82 (526)
144 PRK13055 putative lipid kinase 68.0 48 0.001 24.8 8.5 74 77-158 19-95 (334)
145 COG0415 PhrB Deoxyribodipyrimi 68.0 59 0.0013 25.8 9.9 89 13-126 11-99 (461)
146 PRK15411 rcsA colanic acid cap 68.0 37 0.0008 23.4 7.7 66 81-155 14-84 (207)
147 cd01986 Alpha_ANH_like Adenine 68.0 24 0.00051 21.2 8.5 34 8-47 1-34 (103)
148 COG1197 Mfd Transcription-repa 67.8 65 0.0014 28.6 9.0 90 3-127 614-706 (1139)
149 TIGR01826 CofD_related conserv 67.6 14 0.0003 27.5 4.6 52 104-157 161-213 (310)
150 PLN02828 formyltetrahydrofolat 67.6 45 0.00099 24.3 10.3 87 4-127 69-157 (268)
151 TIGR00674 dapA dihydrodipicoli 67.2 43 0.00094 24.4 7.2 64 94-157 68-133 (285)
152 TIGR00696 wecB_tagA_cpsF bacte 67.0 37 0.00079 23.0 6.4 44 80-125 61-108 (177)
153 PRK00861 putative lipid kinase 67.0 47 0.001 24.3 7.4 58 94-158 33-91 (300)
154 PF12683 DUF3798: Protein of u 66.2 23 0.0005 25.8 5.3 90 7-126 4-95 (275)
155 COG3969 Predicted phosphoadeno 65.9 11 0.00024 28.4 3.8 40 4-44 26-65 (407)
156 TIGR03702 lip_kinase_YegS lipi 65.7 50 0.0011 24.1 8.0 66 85-158 21-90 (293)
157 cd07186 CofD_like LPPG:FO 2-ph 65.6 26 0.00057 26.0 5.7 51 104-156 172-223 (303)
158 PRK07313 phosphopantothenoylcy 65.3 18 0.00039 24.6 4.6 35 5-42 1-35 (182)
159 COG0452 Dfp Phosphopantothenoy 64.8 48 0.001 25.6 7.2 117 5-158 4-123 (392)
160 KOG0781 Signal recognition par 64.7 73 0.0016 25.6 9.2 110 4-143 378-492 (587)
161 PF04244 DPRP: Deoxyribodipyri 64.7 34 0.00073 24.2 5.9 74 77-157 48-126 (224)
162 PF07355 GRDB: Glycine/sarcosi 64.5 9 0.0002 28.9 3.1 50 105-154 68-117 (349)
163 TIGR00959 ffh signal recogniti 64.4 68 0.0015 25.2 10.5 92 9-133 104-198 (428)
164 COG2201 CheB Chemotaxis respon 64.3 45 0.00097 25.4 6.7 47 104-156 34-82 (350)
165 COG1440 CelA Phosphotransferas 64.2 29 0.00064 21.2 4.8 63 81-156 19-81 (102)
166 PF01933 UPF0052: Uncharacteri 64.2 9 0.00019 28.3 3.1 51 104-156 172-223 (300)
167 PRK00509 argininosuccinate syn 64.0 67 0.0015 24.9 11.4 38 5-47 2-39 (399)
168 COG1184 GCD2 Translation initi 63.6 59 0.0013 24.2 9.3 52 102-157 128-179 (301)
169 TIGR00273 iron-sulfur cluster- 63.4 47 0.001 26.0 7.0 61 63-125 36-96 (432)
170 PF11215 DUF3010: Protein of u 63.3 26 0.00057 22.7 4.7 49 108-156 52-102 (138)
171 cd02070 corrinoid_protein_B12- 63.2 45 0.00096 22.9 6.3 67 82-154 101-171 (201)
172 PF00701 DHDPS: Dihydrodipicol 63.0 56 0.0012 23.8 7.5 64 93-156 70-135 (289)
173 PRK13011 formyltetrahydrofolat 62.9 59 0.0013 23.9 9.5 83 4-126 88-174 (286)
174 PF03575 Peptidase_S51: Peptid 62.3 10 0.00022 24.8 2.9 62 80-145 2-63 (154)
175 KOG1467 Translation initiation 62.1 80 0.0017 25.2 11.1 107 6-156 360-469 (556)
176 PF14639 YqgF: Holliday-juncti 62.1 11 0.00024 24.8 2.9 50 105-157 51-107 (150)
177 COG1927 Mtd Coenzyme F420-depe 61.9 42 0.0009 23.6 5.7 48 107-158 50-97 (277)
178 TIGR00824 EIIA-man PTS system, 61.9 36 0.00078 21.1 9.0 88 5-124 1-91 (116)
179 TIGR00169 leuB 3-isopropylmala 61.8 57 0.0012 24.8 7.0 26 15-42 162-187 (349)
180 PRK08673 3-deoxy-7-phosphohept 61.7 68 0.0015 24.3 8.1 106 16-157 104-209 (335)
181 cd00532 MGS-like MGS-like doma 61.6 35 0.00076 20.9 6.2 66 87-154 38-105 (112)
182 PF02441 Flavoprotein: Flavopr 61.6 20 0.00044 22.6 4.1 112 6-157 1-119 (129)
183 PF02610 Arabinose_Isome: L-ar 61.2 31 0.00067 26.2 5.4 49 104-158 58-107 (359)
184 PHA02546 47 endonuclease subun 61.0 14 0.0003 27.8 3.7 14 78-91 26-39 (340)
185 PLN02331 phosphoribosylglycina 60.6 55 0.0012 22.8 9.9 82 7-126 1-87 (207)
186 TIGR00147 lipid kinase, YegS/R 60.4 63 0.0014 23.5 8.5 72 78-157 19-92 (293)
187 PRK00994 F420-dependent methyl 60.4 41 0.00089 24.1 5.6 48 108-159 51-98 (277)
188 PF00834 Ribul_P_3_epim: Ribul 60.2 20 0.00043 24.8 4.1 45 78-125 151-195 (201)
189 cd01997 GMP_synthase_C The C-t 60.2 68 0.0015 23.7 9.9 36 7-47 1-36 (295)
190 cd07187 YvcK_like family of mo 59.8 22 0.00047 26.5 4.4 51 104-156 164-215 (308)
191 TIGR00524 eIF-2B_rel eIF-2B al 59.8 38 0.00082 25.1 5.7 61 87-155 174-238 (303)
192 PRK13608 diacylglycerol glucos 59.7 76 0.0017 24.2 7.8 42 1-44 1-46 (391)
193 PF03746 LamB_YcsF: LamB/YcsF 59.6 63 0.0014 23.2 11.2 121 8-152 30-160 (242)
194 PRK06372 translation initiatio 59.6 52 0.0011 23.8 6.2 38 117-155 151-192 (253)
195 PRK08384 thiamine biosynthesis 59.2 81 0.0017 24.3 10.0 35 4-44 179-213 (381)
196 COG0552 FtsY Signal recognitio 59.1 76 0.0017 24.0 8.5 48 87-137 190-241 (340)
197 PRK05720 mtnA methylthioribose 58.8 44 0.00094 25.4 5.9 62 87-156 202-267 (344)
198 KOG1552 Predicted alpha/beta h 58.6 9.4 0.0002 27.5 2.3 64 96-159 129-203 (258)
199 COG1504 Uncharacterized conser 58.2 23 0.00049 22.1 3.6 44 111-157 55-98 (121)
200 PRK06850 hypothetical protein; 58.0 98 0.0021 24.9 8.7 71 7-99 36-109 (507)
201 PRK14561 hypothetical protein; 58.0 58 0.0013 22.3 9.7 31 7-44 2-32 (194)
202 PRK00766 hypothetical protein; 57.9 49 0.0011 22.9 5.6 57 94-154 43-104 (194)
203 smart00851 MGS MGS-like domain 57.8 36 0.00078 19.9 4.8 64 86-152 25-89 (90)
204 cd02071 MM_CoA_mut_B12_BD meth 57.8 44 0.00095 20.8 6.3 44 82-129 18-62 (122)
205 PRK05920 aromatic acid decarbo 57.5 31 0.00067 24.0 4.6 36 4-42 2-37 (204)
206 PF02142 MGS: MGS-like domain 57.5 15 0.00033 21.8 2.8 66 84-152 23-94 (95)
207 PF10236 DAP3: Mitochondrial r 57.1 50 0.0011 24.5 6.0 21 135-155 141-162 (309)
208 PRK08185 hypothetical protein; 57.0 73 0.0016 23.4 6.7 55 104-158 24-78 (283)
209 PRK08334 translation initiatio 57.0 55 0.0012 25.0 6.2 61 87-155 215-279 (356)
210 PF10808 DUF2542: Protein of u 56.9 7.1 0.00015 22.3 1.2 30 129-159 22-51 (79)
211 COG0042 tRNA-dihydrouridine sy 56.6 82 0.0018 23.6 7.1 75 75-153 122-203 (323)
212 PRK08349 hypothetical protein; 56.4 62 0.0013 22.1 11.2 34 6-45 1-34 (198)
213 TIGR00512 salvage_mtnA S-methy 56.2 49 0.0011 25.0 5.8 62 87-156 202-267 (331)
214 TIGR03297 Ppyr-DeCO2ase phosph 56.1 11 0.00023 28.7 2.4 58 100-157 60-124 (361)
215 PF01207 Dus: Dihydrouridine s 56.0 82 0.0018 23.4 7.6 60 94-153 123-188 (309)
216 TIGR01501 MthylAspMutase methy 55.7 53 0.0012 21.2 5.3 41 83-127 21-62 (134)
217 PRK00772 3-isopropylmalate deh 55.6 75 0.0016 24.3 6.7 27 15-43 165-191 (358)
218 TIGR00640 acid_CoA_mut_C methy 55.5 52 0.0011 21.0 5.7 59 82-146 21-80 (132)
219 COG0482 TrmU Predicted tRNA(5- 55.2 93 0.002 23.8 11.4 114 4-128 2-127 (356)
220 PRK09875 putative hydrolase; P 55.0 61 0.0013 23.9 6.1 51 75-127 136-188 (292)
221 cd02812 PcrB_like PcrB_like pr 54.7 32 0.0007 24.2 4.4 51 106-159 14-65 (219)
222 PRK06371 translation initiatio 54.6 58 0.0013 24.5 5.9 63 86-156 191-257 (329)
223 KOG3974 Predicted sugar kinase 54.0 30 0.00064 25.2 4.1 37 86-124 72-108 (306)
224 TIGR02088 LEU3_arch isopropylm 53.7 89 0.0019 23.5 6.8 27 14-42 139-165 (322)
225 COG2379 GckA Putative glycerat 53.3 1.1E+02 0.0023 23.9 8.6 54 104-157 258-316 (422)
226 TIGR00930 2a30 K-Cl cotranspor 53.2 1.6E+02 0.0034 25.9 10.7 50 107-159 895-946 (953)
227 PRK04527 argininosuccinate syn 53.2 1.1E+02 0.0023 23.9 11.5 36 6-47 3-38 (400)
228 cd00840 MPP_Mre11_N Mre11 nucl 53.1 29 0.00062 23.7 4.1 8 121-128 81-88 (223)
229 COG1201 Lhr Lhr-like helicases 52.9 1.1E+02 0.0024 26.3 7.8 83 13-125 46-131 (814)
230 TIGR01918 various_sel_PB selen 52.7 19 0.00041 28.0 3.2 49 106-154 65-113 (431)
231 PF13500 AAA_26: AAA domain; P 52.7 20 0.00043 24.4 3.1 16 139-154 120-135 (199)
232 TIGR01917 gly_red_sel_B glycin 52.6 19 0.00041 28.0 3.2 49 106-154 65-113 (431)
233 cd02072 Glm_B12_BD B12 binding 52.0 61 0.0013 20.7 5.3 40 83-126 19-59 (128)
234 cd02069 methionine_synthase_B1 51.7 80 0.0017 22.1 6.0 66 82-153 107-174 (213)
235 cd01715 ETF_alpha The electron 51.7 34 0.00074 22.7 4.1 40 105-151 71-110 (168)
236 PRK12361 hypothetical protein; 51.5 1.3E+02 0.0028 24.3 7.9 70 79-158 261-331 (547)
237 COG1691 NCAIR mutase (PurE)-re 51.5 87 0.0019 22.4 6.4 68 80-157 133-204 (254)
238 COG0329 DapA Dihydrodipicolina 51.2 98 0.0021 22.9 9.1 63 94-156 74-138 (299)
239 PF03162 Y_phosphatase2: Tyros 51.1 44 0.00095 22.3 4.5 69 87-157 28-100 (164)
240 COG4126 Hydantoin racemase [Am 51.1 21 0.00045 25.2 2.9 38 107-152 164-201 (230)
241 TIGR00347 bioD dethiobiotin sy 51.0 49 0.0011 21.6 4.8 13 142-154 123-135 (166)
242 PRK01565 thiamine biosynthesis 50.9 1.1E+02 0.0025 23.5 12.5 36 4-45 175-210 (394)
243 TIGR01768 GGGP-family geranylg 50.8 38 0.00082 24.0 4.3 50 106-158 16-65 (223)
244 COG0788 PurU Formyltetrahydrof 50.8 38 0.00081 24.7 4.2 42 83-126 130-175 (287)
245 COG1066 Sms Predicted ATP-depe 50.7 1.2E+02 0.0027 23.8 8.6 109 8-155 96-217 (456)
246 cd04731 HisF The cyclase subun 50.7 46 0.00099 23.5 4.8 50 106-155 151-200 (243)
247 PF13167 GTP-bdg_N: GTP-bindin 50.5 55 0.0012 19.8 6.9 49 75-125 5-65 (95)
248 PF02310 B12-binding: B12 bind 50.4 56 0.0012 19.9 7.1 42 81-126 18-60 (121)
249 TIGR03590 PseG pseudaminic aci 50.3 96 0.0021 22.5 8.5 15 5-19 170-184 (279)
250 PRK00211 sulfur relay protein 50.0 62 0.0013 20.3 4.9 39 5-46 1-43 (119)
251 cd03364 TOPRIM_DnaG_primases T 50.0 47 0.001 18.8 4.5 34 5-40 43-76 (79)
252 PRK08997 isocitrate dehydrogen 49.9 1.1E+02 0.0024 23.1 7.5 28 15-43 146-173 (334)
253 PRK14974 cell division protein 49.6 1.1E+02 0.0024 23.1 9.4 50 82-133 186-238 (336)
254 PRK06036 translation initiatio 49.2 75 0.0016 24.1 5.8 60 88-155 204-266 (339)
255 PRK08194 tartrate dehydrogenas 49.2 95 0.0021 23.7 6.4 28 15-44 160-187 (352)
256 PF07476 MAAL_C: Methylasparta 48.9 96 0.0021 22.1 7.8 56 74-131 119-175 (248)
257 TIGR00177 molyb_syn molybdenum 48.9 71 0.0015 20.6 5.4 41 82-124 31-73 (144)
258 cd01994 Alpha_ANH_like_IV This 48.7 86 0.0019 21.5 8.9 34 7-46 1-34 (194)
259 PF13662 Toprim_4: Toprim doma 48.4 35 0.00076 19.4 3.3 29 5-33 46-74 (81)
260 PRK05772 translation initiatio 48.3 96 0.0021 23.8 6.3 62 87-156 223-288 (363)
261 PRK08305 spoVFB dipicolinate s 48.2 64 0.0014 22.3 5.0 39 1-42 1-40 (196)
262 PF00072 Response_reg: Respons 48.0 56 0.0012 19.2 6.3 68 81-157 12-80 (112)
263 cd05403 NT_KNTase_like Nucleot 47.8 21 0.00045 20.5 2.3 47 81-131 5-51 (93)
264 COG0426 FpaA Uncharacterized f 47.7 1.3E+02 0.0028 23.3 7.5 49 77-129 261-309 (388)
265 cd06533 Glyco_transf_WecG_TagA 47.6 52 0.0011 22.0 4.5 45 104-154 86-130 (171)
266 TIGR02370 pyl_corrinoid methyl 47.5 91 0.002 21.4 6.2 58 83-146 104-162 (197)
267 PRK09261 phospho-2-dehydro-3-d 47.3 1.3E+02 0.0027 23.0 9.6 56 87-156 133-188 (349)
268 cd01424 MGS_CPS_II Methylglyox 47.2 64 0.0014 19.6 6.4 62 87-153 39-100 (110)
269 COG1205 Distinct helicase fami 46.5 2E+02 0.0043 25.0 8.5 88 6-124 86-174 (851)
270 PRK08576 hypothetical protein; 46.4 1.5E+02 0.0032 23.5 9.8 34 7-46 236-269 (438)
271 PRK09195 gatY tagatose-bisphos 46.3 1.2E+02 0.0026 22.4 7.0 56 103-158 28-84 (284)
272 TIGR00289 conserved hypothetic 45.7 1.1E+02 0.0023 21.7 10.7 89 7-125 2-93 (222)
273 PRK00771 signal recognition pa 45.5 1.5E+02 0.0033 23.4 9.5 32 9-43 100-131 (437)
274 cd03145 GAT1_cyanophycinase Ty 45.3 1E+02 0.0022 21.4 8.8 97 16-146 12-112 (217)
275 PF02878 PGM_PMM_I: Phosphoglu 45.3 56 0.0012 20.8 4.2 42 4-47 39-80 (137)
276 TIGR00290 MJ0570_dom MJ0570-re 45.2 1.1E+02 0.0024 21.7 10.6 89 7-125 2-93 (223)
277 cd06318 PBP1_ABC_sugar_binding 44.8 1.1E+02 0.0024 21.6 7.7 74 75-156 13-88 (282)
278 PF01596 Methyltransf_3: O-met 44.6 43 0.00093 23.2 3.8 46 80-127 83-131 (205)
279 TIGR02089 TTC tartrate dehydro 44.6 1.2E+02 0.0027 23.1 6.4 28 15-44 163-190 (352)
280 COG1058 CinA Predicted nucleot 44.5 1.2E+02 0.0025 22.1 6.0 42 80-124 23-67 (255)
281 KOG0780 Signal recognition par 44.5 1.5E+02 0.0033 23.2 8.9 54 82-137 147-203 (483)
282 PHA02031 putative DnaG-like pr 44.5 1.2E+02 0.0027 22.1 6.2 37 6-44 207-243 (266)
283 KOG1116 Sphingosine kinase, in 44.4 93 0.002 25.4 5.9 84 74-160 194-279 (579)
284 PRK10481 hypothetical protein; 44.1 1.1E+02 0.0025 21.6 7.0 42 105-153 167-211 (224)
285 PF13727 CoA_binding_3: CoA-bi 44.0 34 0.00074 22.2 3.2 47 105-155 129-175 (175)
286 PRK10415 tRNA-dihydrouridine s 43.7 1.4E+02 0.0029 22.4 8.5 62 94-155 134-201 (321)
287 PRK14025 multifunctional 3-iso 43.7 1.4E+02 0.0031 22.6 7.3 29 15-44 139-171 (330)
288 TIGR03183 DNA_S_dndC putative 43.4 1.7E+02 0.0036 23.3 9.4 25 6-30 14-38 (447)
289 COG0391 Uncharacterized conser 43.3 47 0.001 24.9 4.0 50 104-156 178-229 (323)
290 PRK10966 exonuclease subunit S 43.2 42 0.0009 26.0 3.9 12 141-152 94-105 (407)
291 PRK02261 methylaspartate mutas 42.7 91 0.002 20.1 6.6 43 82-128 22-65 (137)
292 cd06319 PBP1_ABC_sugar_binding 42.7 1.2E+02 0.0025 21.3 6.6 71 77-155 15-87 (277)
293 PRK08883 ribulose-phosphate 3- 42.7 1.2E+02 0.0026 21.4 8.5 44 80-126 154-197 (220)
294 cd08550 GlyDH-like Glycerol_de 42.4 1.5E+02 0.0032 22.4 8.7 69 80-158 38-111 (349)
295 PLN00118 isocitrate dehydrogen 42.2 1.6E+02 0.0035 22.7 7.1 29 14-43 182-210 (372)
296 cd02803 OYE_like_FMN_family Ol 42.0 1.4E+02 0.0031 22.1 8.8 49 107-155 231-288 (327)
297 PF00885 DMRL_synthase: 6,7-di 41.8 98 0.0021 20.2 6.2 77 74-152 16-103 (144)
298 cd01971 Nitrogenase_VnfN_like 41.7 48 0.001 25.8 4.0 25 103-127 102-126 (427)
299 PRK05406 LamB/YcsF family prot 41.3 1.3E+02 0.0029 21.6 6.8 101 12-126 36-146 (246)
300 PF00781 DAGK_cat: Diacylglyce 41.3 88 0.0019 19.5 6.5 70 81-158 18-92 (130)
301 PF07745 Glyco_hydro_53: Glyco 41.3 1.6E+02 0.0034 22.4 7.0 81 74-154 150-235 (332)
302 smart00732 YqgFc Likely ribonu 41.2 71 0.0015 18.6 4.0 54 104-157 38-93 (99)
303 COG1445 FrwB Phosphotransferas 41.2 71 0.0015 20.3 3.9 53 80-134 21-73 (122)
304 PF01515 PTA_PTB: Phosphate ac 41.2 1.3E+02 0.0029 22.5 6.1 112 3-128 12-127 (319)
305 PF01261 AP_endonuc_2: Xylose 40.9 1.1E+02 0.0024 20.4 8.3 81 19-120 70-158 (213)
306 cd04732 HisA HisA. Phosphorib 40.9 77 0.0017 22.1 4.7 48 107-154 149-196 (234)
307 PRK04169 geranylgeranylglycery 40.6 65 0.0014 23.0 4.2 46 110-158 25-70 (232)
308 cd01537 PBP1_Repressors_Sugar_ 40.6 1.2E+02 0.0026 20.8 9.2 72 77-157 15-88 (264)
309 KOG0784 Isocitrate dehydrogena 40.6 28 0.00061 26.2 2.4 29 16-45 184-212 (375)
310 cd05569 PTS_IIB_fructose PTS_I 40.5 80 0.0017 18.8 4.6 45 79-127 17-63 (96)
311 cd00885 cinA Competence-damage 40.5 1.1E+02 0.0024 20.5 5.5 41 82-124 23-65 (170)
312 PRK14024 phosphoribosyl isomer 40.2 1.3E+02 0.0029 21.3 7.4 48 107-154 149-196 (241)
313 PRK02628 nadE NAD synthetase; 40.1 1.4E+02 0.0031 24.9 6.7 39 5-43 361-400 (679)
314 cd06301 PBP1_rhizopine_binding 39.9 1.3E+02 0.0028 21.0 7.7 72 77-156 15-89 (272)
315 COG3867 Arabinogalactan endo-1 39.9 1.6E+02 0.0035 22.2 7.7 82 74-155 196-282 (403)
316 cd01972 Nitrogenase_VnfE_like 39.9 57 0.0012 25.3 4.2 25 103-127 105-130 (426)
317 COG2102 Predicted ATPases of P 39.8 1.4E+02 0.0029 21.3 9.2 89 7-125 2-94 (223)
318 TIGR03573 WbuX N-acetyl sugar 39.8 1.6E+02 0.0036 22.2 10.3 23 105-127 148-170 (343)
319 COG1036 Archaeal flavoproteins 39.7 34 0.00075 23.0 2.5 44 113-157 84-134 (187)
320 cd01996 Alpha_ANH_like_III Thi 39.5 1E+02 0.0022 19.8 10.0 34 7-45 3-36 (154)
321 CHL00076 chlB photochlorophyll 39.5 60 0.0013 26.0 4.3 28 15-48 10-37 (513)
322 PRK06801 hypothetical protein; 39.4 1.6E+02 0.0034 21.8 7.4 55 104-158 29-84 (286)
323 PRK12726 flagellar biosynthesi 39.4 1.9E+02 0.004 22.7 8.9 49 82-132 252-300 (407)
324 cd07388 MPP_Tt1561 Thermus the 39.2 88 0.0019 22.1 4.7 20 105-124 19-38 (224)
325 PRK00090 bioD dithiobiotin syn 39.2 91 0.002 21.5 4.8 15 140-154 125-139 (222)
326 cd06375 PBP1_mGluR_groupII Lig 39.1 1.9E+02 0.0041 22.7 10.4 24 104-127 243-266 (458)
327 PF01177 Asp_Glu_race: Asp/Glu 39.0 58 0.0013 22.2 3.8 40 108-152 162-205 (216)
328 PLN00123 isocitrate dehydrogen 38.9 1.8E+02 0.0039 22.4 6.8 29 15-44 167-195 (360)
329 PF06050 HGD-D: 2-hydroxygluta 38.9 44 0.00096 24.8 3.4 52 103-155 272-324 (349)
330 cd00958 DhnA Class I fructose- 38.8 1.4E+02 0.0029 20.9 8.3 71 75-155 106-186 (235)
331 PRK08392 hypothetical protein; 38.7 1.3E+02 0.0029 20.8 6.1 66 79-150 138-205 (215)
332 PRK12737 gatY tagatose-bisphos 38.6 1.6E+02 0.0035 21.7 7.1 55 104-158 29-84 (284)
333 PRK12857 fructose-1,6-bisphosp 38.6 1.6E+02 0.0035 21.7 7.2 55 104-158 29-84 (284)
334 cd07392 MPP_PAE1087 Pyrobaculu 38.5 52 0.0011 21.7 3.5 17 142-158 46-62 (188)
335 KOG2310 DNA repair exonuclease 38.5 28 0.00062 28.1 2.3 22 104-125 39-60 (646)
336 PRK11106 queuosine biosynthesi 38.3 1.5E+02 0.0031 21.1 10.6 36 6-47 2-37 (231)
337 PLN02958 diacylglycerol kinase 38.3 2.1E+02 0.0045 22.9 12.7 71 81-159 133-210 (481)
338 cd01967 Nitrogenase_MoFe_alpha 38.3 75 0.0016 24.4 4.6 25 103-127 103-128 (406)
339 TIGR03729 acc_ester putative p 38.2 88 0.0019 22.0 4.7 9 96-104 33-41 (239)
340 COG0191 Fba Fructose/tagatose 38.1 1.7E+02 0.0036 21.7 6.7 55 104-158 29-85 (286)
341 TIGR00552 nadE NAD+ synthetase 37.9 1.5E+02 0.0032 21.1 7.9 36 4-44 21-56 (250)
342 PLN02417 dihydrodipicolinate s 37.6 1.6E+02 0.0035 21.4 6.7 62 94-157 71-134 (280)
343 cd06322 PBP1_ABC_sugar_binding 37.3 1.4E+02 0.0031 20.8 6.8 74 75-156 13-88 (267)
344 COG0151 PurD Phosphoribosylami 37.3 35 0.00076 26.6 2.6 23 104-126 50-72 (428)
345 cd02801 DUS_like_FMN Dihydrour 37.3 1.4E+02 0.003 20.7 8.0 51 105-155 139-190 (231)
346 PRK06455 riboflavin synthase; 37.2 1.3E+02 0.0027 20.1 6.9 77 78-154 15-97 (155)
347 smart00852 MoCF_biosynth Proba 37.0 1.1E+02 0.0024 19.3 5.5 41 82-124 22-64 (135)
348 cd01539 PBP1_GGBP Periplasmic 37.0 1.6E+02 0.0035 21.3 7.2 71 77-155 15-89 (303)
349 TIGR00064 ftsY signal recognit 36.8 1.7E+02 0.0036 21.3 9.3 23 110-132 147-169 (272)
350 TIGR00486 YbgI_SA1388 dinuclea 36.8 87 0.0019 22.4 4.5 24 2-28 33-56 (249)
351 PRK08417 dihydroorotase; Provi 36.4 39 0.00084 25.8 2.8 92 18-128 180-279 (386)
352 PRK13011 formyltetrahydrofolat 36.3 1.7E+02 0.0038 21.5 8.2 41 1-44 1-41 (286)
353 cd04724 Tryptophan_synthase_al 36.3 1.6E+02 0.0034 21.0 8.7 72 80-153 118-192 (242)
354 CHL00073 chlN photochlorophyll 36.3 79 0.0017 25.1 4.4 26 103-128 113-139 (457)
355 cd01981 Pchlide_reductase_B Pc 36.1 67 0.0014 25.0 4.1 25 103-127 101-126 (430)
356 PF01008 IF-2B: Initiation fac 36.1 1.7E+02 0.0036 21.2 10.9 58 89-155 156-217 (282)
357 TIGR02260 benz_CoA_red_B benzo 36.1 83 0.0018 24.5 4.5 51 105-155 338-388 (413)
358 TIGR03609 S_layer_CsaB polysac 36.1 1.7E+02 0.0037 21.3 6.0 47 108-156 57-107 (298)
359 PF09936 Methyltrn_RNA_4: SAM- 36.1 91 0.002 21.4 4.1 83 71-154 53-138 (185)
360 PF06506 PrpR_N: Propionate ca 36.0 1.2E+02 0.0027 20.2 4.9 32 114-157 31-62 (176)
361 PLN02476 O-methyltransferase 35.9 1.3E+02 0.0029 22.1 5.3 48 78-127 154-204 (278)
362 PF02729 OTCace_N: Aspartate/o 35.8 80 0.0017 20.5 3.8 27 117-152 94-120 (142)
363 cd01968 Nitrogenase_NifE_I Nit 35.6 89 0.0019 24.1 4.6 25 103-127 102-127 (410)
364 cd00946 FBP_aldolase_IIA Class 35.4 2E+02 0.0044 21.9 7.4 55 103-157 26-96 (345)
365 PRK13396 3-deoxy-7-phosphohept 35.3 2E+02 0.0044 22.0 10.0 106 16-157 112-217 (352)
366 TIGR01283 nifE nitrogenase mol 35.3 68 0.0015 25.2 4.0 25 103-127 137-162 (456)
367 TIGR01304 IMP_DH_rel_2 IMP deh 35.2 2.1E+02 0.0045 22.1 8.0 50 104-153 142-193 (369)
368 cd07399 MPP_YvnB Bacillus subt 35.2 64 0.0014 22.3 3.5 16 140-155 97-113 (214)
369 PRK01269 tRNA s(4)U8 sulfurtra 35.1 2.3E+02 0.005 22.6 11.4 38 4-47 176-213 (482)
370 cd00947 TBP_aldolase_IIB Tagat 35.0 1.8E+02 0.004 21.3 6.6 55 104-158 24-79 (276)
371 KOG2014 SMT3/SUMO-activating c 35.0 85 0.0018 23.5 4.1 45 79-127 86-130 (331)
372 COG3598 RepA RecA-family ATPas 35.0 1.8E+02 0.0038 22.3 5.8 52 107-158 184-242 (402)
373 TIGR00829 FRU PTS system, fruc 34.8 97 0.0021 18.1 4.4 46 81-128 18-63 (85)
374 COG0603 Predicted PP-loop supe 34.7 1.7E+02 0.0036 20.8 8.0 37 5-47 2-38 (222)
375 PRK06806 fructose-bisphosphate 34.5 1.9E+02 0.004 21.3 7.6 55 104-158 29-84 (281)
376 cd02065 B12-binding_like B12 b 34.5 1.1E+02 0.0024 18.6 5.8 65 83-154 19-86 (125)
377 cd08170 GlyDH Glycerol dehydro 34.3 2E+02 0.0044 21.6 7.9 72 78-158 36-111 (351)
378 PF01949 DUF99: Protein of unk 34.2 60 0.0013 22.3 3.1 62 94-159 37-102 (187)
379 cd07396 MPP_Nbla03831 Homo sap 34.0 89 0.0019 22.4 4.2 13 143-155 68-80 (267)
380 TIGR00737 nifR3_yhdG putative 34.0 2E+02 0.0043 21.4 7.9 50 106-155 149-199 (319)
381 smart00493 TOPRIM topoisomeras 33.9 79 0.0017 17.4 3.3 26 6-31 48-73 (76)
382 COG1731 Archaeal riboflavin sy 33.7 1.3E+02 0.0029 19.4 5.2 70 86-155 23-101 (154)
383 PF01116 F_bP_aldolase: Fructo 33.5 73 0.0016 23.5 3.7 51 104-154 28-79 (287)
384 PF11965 DUF3479: Domain of un 33.3 1.5E+02 0.0033 19.9 8.0 36 7-42 2-37 (164)
385 TIGR00364 exsB protein. This p 33.3 1.6E+02 0.0034 20.1 11.9 33 8-46 1-33 (201)
386 PRK09271 flavodoxin; Provision 33.1 1.3E+02 0.0027 19.8 4.5 10 117-126 51-60 (160)
387 PRK02083 imidazole glycerol ph 33.1 1.2E+02 0.0026 21.6 4.8 49 107-155 156-204 (253)
388 PF01012 ETF: Electron transfe 33.0 1.4E+02 0.0031 19.5 7.0 82 74-157 15-99 (164)
389 COG1139 Uncharacterized conser 32.9 2.5E+02 0.0054 22.3 6.8 60 64-125 51-110 (459)
390 PF10138 vWA-TerF-like: vWA fo 32.7 1.2E+02 0.0026 21.1 4.4 41 5-47 105-145 (200)
391 PRK03692 putative UDP-N-acetyl 32.7 1.5E+02 0.0033 21.3 5.1 43 105-153 145-187 (243)
392 PRK12755 phospho-2-dehydro-3-d 32.7 2.3E+02 0.0049 21.7 9.1 55 87-155 134-188 (353)
393 cd07391 MPP_PF1019 Pyrococcus 32.6 1.3E+02 0.0029 19.8 4.7 13 79-91 29-41 (172)
394 PRK08535 translation initiatio 32.5 2.1E+02 0.0046 21.3 9.5 59 87-155 167-229 (310)
395 PF13362 Toprim_3: Toprim doma 32.5 1.1E+02 0.0023 17.9 4.4 30 4-33 40-71 (96)
396 TIGR03572 WbuZ glycosyl amidat 32.5 1.8E+02 0.0038 20.4 8.3 49 107-155 156-204 (232)
397 PRK03670 competence damage-ind 32.3 1.9E+02 0.0041 20.9 5.5 42 81-124 23-67 (252)
398 PRK03437 3-isopropylmalate deh 32.3 61 0.0013 24.6 3.2 29 15-44 159-187 (344)
399 KOG1466 Translation initiation 32.2 2.1E+02 0.0045 21.1 10.3 61 86-156 176-240 (313)
400 PLN02589 caffeoyl-CoA O-methyl 32.2 1.6E+02 0.0035 21.1 5.2 47 79-127 116-166 (247)
401 cd06361 PBP1_GPC6A_like Ligand 32.1 2.4E+02 0.0051 21.7 11.4 24 104-127 245-268 (403)
402 KOG3180 Electron transfer flav 31.9 1.1E+02 0.0023 21.5 3.9 23 104-126 101-123 (254)
403 TIGR00735 hisF imidazoleglycer 31.9 1.9E+02 0.0042 20.6 8.1 49 107-155 158-206 (254)
404 PRK05703 flhF flagellar biosyn 31.9 2.5E+02 0.0055 22.0 8.1 28 13-42 230-258 (424)
405 PF01935 DUF87: Domain of unkn 31.9 53 0.0011 22.8 2.7 38 119-158 25-62 (229)
406 cd01538 PBP1_ABC_xylose_bindin 31.8 1.9E+02 0.0042 20.6 7.7 73 76-156 14-88 (288)
407 PRK07565 dihydroorotate dehydr 31.7 2.2E+02 0.0048 21.3 7.6 61 94-154 102-171 (334)
408 PRK00748 1-(5-phosphoribosyl)- 31.6 1.4E+02 0.0031 20.7 4.9 48 107-154 149-196 (233)
409 TIGR01361 DAHP_synth_Bsub phos 31.6 2E+02 0.0044 20.8 7.1 67 77-157 75-141 (260)
410 PTZ00365 60S ribosomal protein 31.5 83 0.0018 22.9 3.5 49 105-157 136-184 (266)
411 KOG0785 Isocitrate dehydrogena 31.5 58 0.0013 24.4 2.8 28 16-44 178-205 (365)
412 PRK07106 5-aminoimidazole-4-ca 31.5 67 0.0015 24.8 3.2 38 86-127 348-387 (390)
413 PF09370 TIM-br_sig_trns: TIM- 31.5 1.1E+02 0.0025 22.3 4.2 69 79-153 3-86 (268)
414 COG4122 Predicted O-methyltran 31.4 1.8E+02 0.0038 20.6 5.1 48 77-127 94-142 (219)
415 PF13685 Fe-ADH_2: Iron-contai 31.3 1.5E+02 0.0033 21.3 4.9 72 79-159 34-110 (250)
416 cd07385 MPP_YkuE_C Bacillus su 31.2 1.7E+02 0.0037 20.0 5.2 10 119-128 66-75 (223)
417 PF03358 FMN_red: NADPH-depend 31.1 1.4E+02 0.0031 19.0 6.3 52 74-129 14-82 (152)
418 PRK07667 uridine kinase; Provi 31.1 95 0.0021 21.0 3.8 49 107-155 4-52 (193)
419 PRK14177 bifunctional 5,10-met 31.1 1.3E+02 0.0028 22.2 4.6 49 104-159 141-194 (284)
420 PF14097 SpoVAE: Stage V sporu 31.0 67 0.0014 21.7 2.8 23 7-29 1-23 (180)
421 PF10649 DUF2478: Protein of u 30.9 96 0.0021 20.7 3.6 47 107-154 83-129 (159)
422 COG0622 Predicted phosphoester 30.9 1.5E+02 0.0032 20.0 4.6 37 96-132 82-124 (172)
423 KOG1465 Translation initiation 30.7 99 0.0022 23.2 3.9 40 117-156 230-272 (353)
424 PF06925 MGDG_synth: Monogalac 30.6 1.6E+02 0.0035 19.4 6.6 29 17-47 3-31 (169)
425 cd00758 MoCF_BD MoCF_BD: molyb 30.6 1.4E+02 0.0031 18.8 5.4 40 83-124 24-65 (133)
426 TIGR01858 tag_bisphos_ald clas 30.5 2.2E+02 0.0048 21.0 7.2 55 104-158 27-82 (282)
427 PRK09222 isocitrate dehydrogen 30.5 69 0.0015 25.6 3.3 28 15-43 148-175 (482)
428 PTZ00323 NAD+ synthase; Provis 30.2 2.3E+02 0.005 21.0 7.5 41 5-46 46-86 (294)
429 PF04430 DUF498: Protein of un 30.2 1.3E+02 0.0029 18.3 4.4 45 107-155 41-87 (110)
430 COG0301 ThiI Thiamine biosynth 30.2 2.6E+02 0.0057 21.7 10.8 37 6-48 176-212 (383)
431 PLN02781 Probable caffeoyl-CoA 30.1 2E+02 0.0044 20.3 5.4 47 78-126 104-153 (234)
432 cd07402 MPP_GpdQ Enterobacter 30.0 1.3E+02 0.0027 20.9 4.4 15 142-156 64-78 (240)
433 PRK05595 replicative DNA helic 29.7 1.5E+02 0.0032 23.3 5.0 46 110-155 304-358 (444)
434 COG1111 MPH1 ERCC4-like helica 29.7 2.4E+02 0.0053 22.8 6.0 55 75-130 349-405 (542)
435 COG0434 SgcQ Predicted TIM-bar 29.7 1.2E+02 0.0026 21.9 4.0 48 103-153 163-210 (263)
436 cd00453 FTBP_aldolase_II Fruct 29.7 2.3E+02 0.005 21.6 5.7 55 104-158 24-95 (340)
437 TIGR00511 ribulose_e2b2 ribose 29.6 2.4E+02 0.0051 21.0 9.8 59 87-155 162-224 (301)
438 PRK09197 fructose-bisphosphate 29.5 2.6E+02 0.0057 21.4 7.8 55 104-158 32-102 (350)
439 PRK14478 nitrogenase molybdenu 29.5 99 0.0021 24.6 4.1 25 103-127 135-160 (475)
440 PF01902 ATP_bind_4: ATP-bindi 29.5 2E+02 0.0044 20.2 8.5 89 7-125 2-93 (218)
441 PF02571 CbiJ: Precorrin-6x re 29.5 94 0.002 22.3 3.6 42 111-158 188-229 (249)
442 cd06323 PBP1_ribose_binding Pe 29.5 2E+02 0.0042 20.0 6.7 73 76-156 14-88 (268)
443 COG0320 LipA Lipoate synthase 29.4 2.3E+02 0.0051 21.0 5.5 30 98-127 219-251 (306)
444 KOG1336 Monodehydroascorbate/f 29.3 2.7E+02 0.0059 22.3 6.2 90 7-127 214-311 (478)
445 PRK09932 glycerate kinase II; 29.2 87 0.0019 24.2 3.6 38 116-155 283-323 (381)
446 TIGR02924 ICDH_alpha isocitrat 29.2 71 0.0015 25.4 3.1 29 14-43 143-171 (473)
447 PRK05234 mgsA methylglyoxal sy 29.1 1.7E+02 0.0036 19.0 10.0 107 3-153 2-111 (142)
448 cd06313 PBP1_ABC_sugar_binding 29.1 2.1E+02 0.0045 20.2 6.2 71 78-156 16-88 (272)
449 cd00886 MogA_MoaB MogA_MoaB fa 29.1 1.7E+02 0.0036 19.1 5.4 40 83-124 25-68 (152)
450 PRK07315 fructose-bisphosphate 29.0 2.4E+02 0.0052 20.9 6.2 54 104-157 29-86 (293)
451 PF14606 Lipase_GDSL_3: GDSL-l 29.0 1.9E+02 0.0042 19.7 5.0 61 94-155 34-100 (178)
452 COG2129 Predicted phosphoester 28.8 1.9E+02 0.0042 20.6 4.9 52 104-159 17-75 (226)
453 PRK07369 dihydroorotase; Provi 28.6 1.6E+02 0.0035 22.9 5.0 93 18-125 212-308 (418)
454 COG3623 SgaU Putative L-xylulo 28.6 2.3E+02 0.005 20.5 6.1 28 16-45 92-119 (287)
455 TIGR03151 enACPred_II putative 28.5 2.5E+02 0.0054 20.9 6.9 45 110-154 122-167 (307)
456 TIGR00175 mito_nad_idh isocitr 28.5 2.6E+02 0.0057 21.2 7.1 29 15-44 144-172 (333)
457 cd06282 PBP1_GntR_like_2 Ligan 28.4 2E+02 0.0044 19.8 8.0 68 79-155 17-86 (266)
458 TIGR00024 SbcD_rel_arch putati 28.4 1.6E+02 0.0035 20.7 4.6 47 77-127 44-100 (225)
459 cd07410 MPP_CpdB_N Escherichia 28.4 2.3E+02 0.005 20.4 6.2 7 117-123 218-224 (277)
460 PRK05647 purN phosphoribosylgl 28.3 2E+02 0.0044 19.8 9.5 84 5-126 1-89 (200)
461 COG0036 Rpe Pentose-5-phosphat 28.3 2.2E+02 0.0048 20.2 6.5 61 79-143 97-157 (220)
462 COG0473 LeuB Isocitrate/isopro 28.2 65 0.0014 24.4 2.7 31 14-45 154-184 (348)
463 PRK13606 LPPG:FO 2-phospho-L-l 28.2 2.4E+02 0.0051 21.2 5.5 46 104-154 174-221 (303)
464 cd07393 MPP_DR1119 Deinococcus 28.2 2E+02 0.0044 20.1 5.2 9 120-128 75-83 (232)
465 PRK12569 hypothetical protein; 28.2 2.3E+02 0.0051 20.4 6.8 100 13-126 40-149 (245)
466 PRK11921 metallo-beta-lactamas 28.1 2.8E+02 0.0061 21.3 10.5 47 78-128 263-311 (394)
467 TIGR00355 purH phosphoribosyla 28.1 89 0.0019 25.1 3.5 32 96-127 475-508 (511)
468 PRK07998 gatY putative fructos 27.5 2.6E+02 0.0056 20.7 6.7 54 104-157 29-83 (283)
469 KOG2984 Predicted hydrolase [G 27.5 58 0.0013 23.0 2.2 25 134-158 202-226 (277)
470 PRK13602 putative ribosomal pr 27.5 62 0.0014 18.8 2.1 18 108-125 18-35 (82)
471 COG1409 Icc Predicted phosphoh 27.4 1.5E+02 0.0033 21.0 4.5 51 107-158 23-75 (301)
472 PLN02347 GMP synthetase 27.4 3.4E+02 0.0075 22.1 8.2 38 5-47 229-266 (536)
473 PRK11148 cyclic 3',5'-adenosin 27.3 1.3E+02 0.0029 21.6 4.2 13 36-48 13-25 (275)
474 PLN02496 probable phosphopanto 27.3 2.1E+02 0.0046 20.1 4.9 37 4-44 18-54 (209)
475 TIGR02667 moaB_proteo molybden 27.2 1.9E+02 0.0042 19.1 5.5 40 83-124 27-70 (163)
476 PRK13397 3-deoxy-7-phosphohept 27.1 2.5E+02 0.0054 20.4 8.3 64 79-156 67-130 (250)
477 cd06317 PBP1_ABC_sugar_binding 27.1 2.2E+02 0.0048 19.8 7.5 71 77-155 16-88 (275)
478 COG0745 OmpR Response regulato 27.0 2.3E+02 0.005 20.0 7.0 68 79-157 12-81 (229)
479 cd01422 MGS Methylglyoxal synt 27.0 1.6E+02 0.0035 18.2 6.2 61 90-153 44-106 (115)
480 PLN02285 methionyl-tRNA formyl 26.7 2.8E+02 0.0061 20.9 7.4 42 84-127 61-103 (334)
481 PF05198 IF3_N: Translation in 26.7 1.1E+02 0.0024 17.5 3.0 30 106-135 30-59 (76)
482 PF07302 AroM: AroM protein; 26.6 2.4E+02 0.0052 20.0 7.4 42 106-154 164-208 (221)
483 PRK05370 argininosuccinate syn 26.5 3.3E+02 0.0072 21.7 11.2 108 4-132 10-137 (447)
484 cd01979 Pchlide_reductase_N Pc 26.5 1.1E+02 0.0024 23.6 3.8 49 77-127 73-128 (396)
485 PTZ00408 NAD-dependent deacety 26.5 2.2E+02 0.0048 20.4 5.1 52 100-158 154-209 (242)
486 PRK05437 isopentenyl pyrophosp 26.4 2.9E+02 0.0063 21.0 6.1 49 78-128 173-221 (352)
487 PRK06731 flhF flagellar biosyn 26.4 2.6E+02 0.0057 20.4 9.1 30 105-134 142-171 (270)
488 PLN02329 3-isopropylmalate deh 26.3 80 0.0017 24.6 3.0 26 16-43 211-236 (409)
489 COG2870 RfaE ADP-heptose synth 26.3 1.9E+02 0.004 22.8 4.8 52 104-158 128-181 (467)
490 COG0069 GltB Glutamate synthas 26.2 3.5E+02 0.0076 21.8 6.7 31 96-126 306-336 (485)
491 cd01999 Argininosuccinate_Synt 26.1 3.1E+02 0.0068 21.2 10.3 35 8-47 1-35 (385)
492 cd06277 PBP1_LacI_like_1 Ligan 26.0 2.3E+02 0.005 19.7 8.8 69 77-156 18-88 (268)
493 PF05679 CHGN: Chondroitin N-a 26.0 3.5E+02 0.0076 21.8 11.4 35 93-127 313-350 (499)
494 PF00994 MoCF_biosynth: Probab 25.9 1.8E+02 0.004 18.5 5.3 42 81-124 20-63 (144)
495 PRK08299 isocitrate dehydrogen 25.9 64 0.0014 25.1 2.4 26 15-42 184-209 (402)
496 PRK06247 pyruvate kinase; Prov 25.9 2.1E+02 0.0045 23.0 5.1 44 105-157 357-401 (476)
497 COG2121 Uncharacterized protei 25.9 2.4E+02 0.0052 19.9 7.1 66 83-155 83-153 (214)
498 PRK04539 ppnK inorganic polyph 25.8 1.8E+02 0.004 21.5 4.7 38 1-40 1-39 (296)
499 cd06309 PBP1_YtfQ_like Peripla 25.7 2.4E+02 0.0052 19.7 7.1 74 75-156 13-88 (273)
500 cd01125 repA Hexameric Replica 25.7 2.4E+02 0.0052 19.7 9.9 53 105-157 99-158 (239)
No 1
>PRK15456 universal stress protein UspG; Provisional
Probab=99.96 E-value=1.7e-28 Score=160.18 Aligned_cols=139 Identities=23% Similarity=0.272 Sum_probs=108.2
Q ss_pred ceEEEEEecCCh--HHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESE--ESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 5 ~~~Ilv~~d~s~--~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|++||+|+|||+ .+..|+++|..+|+. . ++++++||+++..... .. . .........+...+..++.++.
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~-~--~~l~llhv~~~~~~~~-~~---~--~~~~~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQD-D--GVIHLLHVLPGSASLS-LH---R--FAADVRRFEEHLQHEAEERLQT 72 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhc-C--CeEEEEEEecCccccc-cc---c--cccchhhHHHHHHHHHHHHHHH
Confidence 699999999994 899999999999986 4 5999999997653211 00 0 0011122334444555555666
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.+.+...+ +++++++..|++.+.|+++++++++||||||+++++ +.++++||++++++++++||||+||
T Consensus 73 ~~~~~~~~~--~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 73 MVSHFTIDP--SRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred HHHHhCCCC--cceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEEEeC
Confidence 655554444 788899999999999999999999999999999976 7888999999999999999999996
No 2
>PRK15005 universal stress protein F; Provisional
Probab=99.96 E-value=2.1e-27 Score=155.29 Aligned_cols=141 Identities=26% Similarity=0.349 Sum_probs=104.9
Q ss_pred ceEEEEEecCChH--HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEE--SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 5 ~~~Ilv~~d~s~~--s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|++||+|+|+|+. +..|+++|..+|+..+ ++++++|++++.......... .... ... .....+..++.++.
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~--~~l~ll~v~~~~~~~~~~~~~---~~~~-~~~-~~~~~~~~~~~l~~ 74 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDD--AEVHFLTVIPSLPYYASLGLA---YSAE-LPA-MDDLKAEAKSQLEE 74 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccC--CeEEEEEEEccCccccccccc---cccc-chH-HHHHHHHHHHHHHH
Confidence 6999999999998 5799999999999988 899999999764322111000 0000 000 11222333344444
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.+.+...+ +.++..+..|++.+.|+++++++++||||||++ ++++.++++||++++|+++++||||+||
T Consensus 75 ~~~~~~~~~--~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~-~~~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 75 IIKKFKLPT--DRVHVHVEEGSPKDRILELAKKIPADMIIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred HHHHhCCCC--CceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCC-CCCchheeecchHHHHHHhCCCCEEEeC
Confidence 444444344 678888999999999999999999999999988 4678899999999999999999999996
No 3
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.95 E-value=8.6e-27 Score=152.71 Aligned_cols=141 Identities=25% Similarity=0.343 Sum_probs=114.9
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
+||||+|+|+.+..|++||+.+|...+ ++|+++|+.++......... .............+..++.++.+...
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~--~~l~ll~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKG--QTIVLVHVHPPITSIPSSSG-----KLEVASAYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCC--CcEEEEEeccCcccCCCCcc-----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999888 89999999876433211110 11122334445556677777877777
Q ss_pred HHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeecc-chhHHHhhcCC--CCEEEecC
Q 031383 87 YRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLG-SVSDYCAKHVK--CPVVIVKH 156 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~g-s~~~~ll~~~~--~pVlvv~~ 156 (160)
+...+ +.++..+..| ++++.|++++++.++|+||||+++++++.++++| |++.+++++++ ||||+|++
T Consensus 74 ~~~~~--~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 74 CSRKG--VQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred HhhcC--CeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeC
Confidence 77777 8888888876 8999999999999999999999999999999887 69999999999 99999986
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.95 E-value=5.3e-27 Score=153.10 Aligned_cols=139 Identities=16% Similarity=0.189 Sum_probs=104.9
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+|++||||+|+|+.|..|+++|+.+|+..+ ++++++||.++...... . . +. ...+...+..++..++.++.+
T Consensus 2 ~~k~ILvavD~S~~s~~al~~A~~lA~~~~--a~l~llhV~~~~~~~~~-~---~-~~-~~~~~~~~~~~~~~~~~l~~~ 73 (142)
T PRK09982 2 AYKHIGVAISGNEEDALLVNKALELARHND--AHLTLIHIDDGLSELYP-G---I-YF-PATEDILQLLKNKSDNKLYKL 73 (142)
T ss_pred CceEEEEEecCCcchHHHHHHHHHHHHHhC--CeEEEEEEccCcchhch-h---h-hc-cchHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999988 89999999876432110 0 0 00 111222333344444445544
Q ss_pred HHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
...+. . ..++..+..|++++.|+++|++.++||||||++ ++++.+++ | ++++++++++||||+||..
T Consensus 74 ~~~~~--~--~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~-va~~V~~~s~~pVLvv~~~ 140 (142)
T PRK09982 74 TKNIQ--W--PKTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P-AYRGMINKMSADLLIVPFI 140 (142)
T ss_pred HHhcC--C--CcceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H-HHHHHHhcCCCCEEEecCC
Confidence 44332 2 457778888999999999999999999999976 78888877 5 9999999999999999864
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.94 E-value=1.6e-25 Score=146.43 Aligned_cols=139 Identities=18% Similarity=0.231 Sum_probs=98.5
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+|++||+|+|+|+.+..|+++|..+|+..+ ++++++|+..+.... ... ..........+ +..+...+.+
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~--~~~----~~~~~~~~~~~---~~~~~~~~~l 70 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYN--AKVSLIHVDVNYSDL--YTG----LIDVNLGDMQK---RISEETHHAL 70 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhC--CEEEEEEEccChhhh--hhh----hhhcchHHHHH---HHHHHHHHHH
Confidence 479999999999999999999999999888 899999994322111 000 00000111111 1222222333
Q ss_pred HHHHHhcCCcceE-EEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 84 EAVYRNFQNNIHV-KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
.+.....+ +.. ...+..|++.+.|+++|+++++||||||+++ +.+. . +||++++++++++||||+||.+.
T Consensus 71 ~~~~~~~~--~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~-~-lgSva~~v~~~a~~pVLvv~~~~ 141 (144)
T PRK15118 71 TELSTNAG--YPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWS-K-LMSSARQLINTVHVDMLIVPLRD 141 (144)
T ss_pred HHHHHhCC--CCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHH-H-HHHHHHHHHhhCCCCEEEecCCc
Confidence 34445556 554 3456689999999999999999999999996 4444 3 58999999999999999998654
No 6
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.94 E-value=2.7e-25 Score=143.47 Aligned_cols=139 Identities=34% Similarity=0.434 Sum_probs=104.4
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
+++||||+|+++.+..++++|+.+|...+ ++|+++|+.+....... .......................
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~--~~i~~l~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~- 70 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSG--AEITLLHVIPPPPQYSF--------SAAEDEESEEEAEEEEQARQAEA- 70 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEESCHCHHH--------HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhC--CeEEEEEeecccccccc--------ccccccccccccchhhhhhhHHH-
Confidence 59999999999999999999999999988 89999999987754210 00011111111111111111111
Q ss_pred HHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
......+ .......+..|++.+.|+++++++++|+||||+++++++.++++|+++++|+++++|||||||
T Consensus 71 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 71 EEAEAEG-GIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp HHHHHHT-TSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred HHHhhhc-cceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 2222233 266777888899999999999999999999999999999999999999999999999999997
No 7
>PRK10116 universal stress protein UspC; Provisional
Probab=99.94 E-value=4.3e-25 Score=143.98 Aligned_cols=139 Identities=16% Similarity=0.243 Sum_probs=104.8
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+|++|||++|+|+.+..++++|..+|+.++ ++++++|+++....+.. ......+...+...+..++. +
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---l 69 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVN--GKISLITLASDPEMYNQ-------FAAPMLEDLRSVMQEETQSF---L 69 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhC--CEEEEEEEccCcccchh-------hhHHHHHHHHHHHHHHHHHH---H
Confidence 489999999999999999999999999988 89999999865432110 11111222223333333333 3
Q ss_pred HHHHHhcCCcceE-EEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 84 EAVYRNFQNNIHV-KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
++...+.+ +.. ...+..|++.+.|++++++.++||||+|+++++++.+++ |++++++++++||||+||.+.
T Consensus 70 ~~~~~~~~--~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s~a~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 70 DKLIQDAD--YPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--CSAKRVIASSEVDVLLVPLTG 141 (142)
T ss_pred HHHHHhcC--CCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--HHHHHHHhcCCCCEEEEeCCC
Confidence 33334455 554 356778999999999999999999999999998888764 789999999999999999765
No 8
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.93 E-value=2.3e-24 Score=138.68 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=110.1
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
+||||+|+++++..++++|.++|...+ ++|+++|+++....... . ......+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~--~~v~ll~v~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQN--GEIIPLNVIEVPNHSSP----------S----QLEVNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCC--CeEEEEEEEecCCCCCc----------c----hhHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999877 89999999986543210 0 0112234566777777788
Q ss_pred HHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.+.+ +.++..+.. |++.+.|.++++++++|+||||+++++.+.+.++||++.+++++++|||++++
T Consensus 65 ~~~~g--~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 65 AASLG--VPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred hhhcC--CceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 88888 788877754 69999999999999999999999999999899999999999999999999986
No 9
>PRK11175 universal stress protein UspE; Provisional
Probab=99.92 E-value=7e-24 Score=154.31 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=111.2
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
++++||||+|+|+.+..|+++|+++|+..+ ++++++|+.+....... ............+...+..++.++..
T Consensus 2 ~~~~ILv~~D~s~~~~~al~~a~~lA~~~~--a~l~ll~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (305)
T PRK11175 2 KYQNILVVIDPNQDDQPALRRAVYLAQRNG--GKITAFLPIYDFSYEMT-----TLLSPDEREAMRQGVISQRTAWIREQ 74 (305)
T ss_pred CcceEEEEcCCCccccHHHHHHHHHHHhcC--CCEEEEEeccCchhhhh-----cccchhHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999 89999998754322110 01111112222222223334445555
Q ss_pred HHHHHhcCCcceEEEEEe-cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 84 EAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
...+...+ +.++..+. .|++.+.|.++++++++||||+|+++.+++.+.++||++++|+++++||||++|+.
T Consensus 75 ~~~~~~~~--~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 75 AKPYLDAG--IPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred HHHHhhcC--CceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence 55555566 78887766 58999999999999999999999999999999999999999999999999999874
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.92 E-value=5.4e-24 Score=135.77 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=101.7
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
+||||+|+++.+..++++|+.+|...+ ++|+++|+.++.... ..+..++.++.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~--~~l~ll~v~~~~~~~---------------------~~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLK--APWYVVYVETPRLNR---------------------LSEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhC--CCEEEEEEecCcccc---------------------CCHHHHHHHHHHHHH
Confidence 699999999999999999999999988 899999999754320 012233455666666
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~ 155 (160)
+++.+ +.+. .+..+++.+.|.++++++++|+||||+++++.+.++++||++++|++++ +|||||++
T Consensus 58 ~~~~~--~~~~-~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 58 AEELG--AEVV-TLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred HHHcC--CEEE-EEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEeC
Confidence 66666 5443 3345689999999999999999999999999999999999999999999 99999985
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.89 E-value=2.8e-22 Score=145.87 Aligned_cols=142 Identities=18% Similarity=0.275 Sum_probs=103.8
Q ss_pred CceEEEEEecCChHH-------HHHHHHHHHhcCCC-CCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEES-------MHALSWCLNNLFSP-DTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASES 75 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s-------~~al~~a~~~a~~~-~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (160)
.+++||+|+|+|+.+ ..++++|..+|+.. + ++++++|+++......... ..........+..++
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~- 222 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNH--AEVHLVNAYPVTPINIAIE-----LPEFDPSVYNDAIRG- 222 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcC--CceEEEEEecCcchhcccc-----ccccchhhHHHHHHH-
Confidence 468999999998653 67999999999988 7 8999999987543211100 000011111111112
Q ss_pred HHHHHHHHHHHHHhcCCcceE-EEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 76 VNSVMNRAEAVYRNFQNNIHV-KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
...+.+++..+..+ +.. ...+..|++.+.|.+++++.++||||||+++++++.++++||++++|+++++||||+|
T Consensus 223 --~~~~~l~~~~~~~~--~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv 298 (305)
T PRK11175 223 --QHLLAMKALRQKFG--IDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAI 298 (305)
T ss_pred --HHHHHHHHHHHHhC--CChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEE
Confidence 22333334444455 443 4567789999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
|+.
T Consensus 299 ~~~ 301 (305)
T PRK11175 299 KPD 301 (305)
T ss_pred cCC
Confidence 764
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.88 E-value=4.2e-21 Score=122.47 Aligned_cols=130 Identities=35% Similarity=0.529 Sum_probs=107.2
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
+||||+|+++.+..++++|..+|...+ ++|+++|+.+....... ...+......++.++.+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~--~~i~~l~v~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLG--AELVLLHVVDPPPSSAA--------------ELAELLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCCCCcch--------------hHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999988 89999999876543210 22233334445555555555
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
+...+ +.+...+..|+..+.|.++++++++|+||+|+++++.+.+.++|+++++|+++++|||+++
T Consensus 65 ~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 65 LAEAG--VKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HhcCC--CceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 55556 8888888889889999999999999999999999999999999999999999999999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.87 E-value=2.8e-20 Score=122.25 Aligned_cols=150 Identities=29% Similarity=0.382 Sum_probs=120.3
Q ss_pred CCCCceEEEEEec-CChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHH
Q 031383 1 MNTNERRVVVAVD-ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSV 79 (160)
Q Consensus 1 m~~~~~~Ilv~~d-~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (160)
|...+++|++++| +++.+..+++.+..++...+ +.+.++++.+........... ..................+.
T Consensus 1 ~~~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 75 (154)
T COG0589 1 MPAMYKKILVAVDVGSEAAEKALEEAVALAKRLG--APLILLVVIDPLEPTALVSVA---LADAPIPLSEEELEEEAEEL 75 (154)
T ss_pred CccccceEEEEeCCCCHHHHHHHHHHHHHHHhcC--CeEEEEEEecccccccccccc---cccchhhhhHHHHHHHHHHH
Confidence 3567899999999 99999999999999999988 799999988765432111110 00000222333445666777
Q ss_pred HHHHHHHHHhcCCcce-EEEEEecCCh-hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 80 MNRAEAVYRNFQNNIH-VKRVVGCGDA-KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~g~~-~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.+.+.+.+.+.+ +. +...+..|++ .+.|.+++.+.++|+||||+++++++.++++||++++++++++|||+++|..
T Consensus 76 ~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~~~ 153 (154)
T COG0589 76 LAEAKALAEAAG--VPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVRSE 153 (154)
T ss_pred HHHHHHHHHHcC--CCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEccC
Confidence 888888888888 66 5888999987 7999999999999999999999999999999999999999999999999875
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.71 E-value=6.4e-16 Score=113.72 Aligned_cols=131 Identities=12% Similarity=0.140 Sum_probs=87.1
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
|..+|+|||||+|+|+.+..|+++|+++|+..+.+++|+++||.+...... .. . ...+..++.+
T Consensus 1 ~~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~---------~~---~----~~~~~~eell 64 (357)
T PRK12652 1 IMMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP---------EG---Q----DELAAAEELL 64 (357)
T ss_pred CCcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc---------ch---h----HHHHHHHHHH
Confidence 457899999999999999999999999998842118999999998543211 00 1 1112223334
Q ss_pred HHHHHHHHh------cCCcceEEEEEec--------CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc
Q 031383 81 NRAEAVYRN------FQNNIHVKRVVGC--------GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH 146 (160)
Q Consensus 81 ~~~~~~~~~------~~~~~~~~~~~~~--------g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~ 146 (160)
+++++.+++ .| ++++..+.. |++++.|+++|+++++|+||||..=..+-..-++.+. +.=+.+
T Consensus 65 e~~~~~~~~~l~~~~~g--V~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~~-~~~~~~ 141 (357)
T PRK12652 65 ERVEVWATEDLGDDASS--VTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQPL-ERELAR 141 (357)
T ss_pred HHHHHHHHHhhhcccCC--CceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccchH-HHHHHh
Confidence 444443332 45 888887765 8999999999999999999999653333222333333 333444
Q ss_pred CCCC
Q 031383 147 VKCP 150 (160)
Q Consensus 147 ~~~p 150 (160)
+.|.
T Consensus 142 ~~~~ 145 (357)
T PRK12652 142 AGIT 145 (357)
T ss_pred cCCc
Confidence 4443
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.54 E-value=1.7e-13 Score=112.23 Aligned_cols=124 Identities=9% Similarity=0.067 Sum_probs=99.1
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
..+|||++++++.+..++++|.++|.+.+ ++++++||..+..... ..+...++.+.+
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~--a~~~~l~V~~~~~~~~--------------------~~~~~~~l~~~~- 306 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLG--SVWHAVYVETPRLHRL--------------------PEKKRRAILSAL- 306 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcC--CCEEEEEEecCCcCcC--------------------CHHHHHHHHHHH-
Confidence 46899999999999999999999999999 8999999997643210 012223333333
Q ss_pred HHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecCC
Q 031383 85 AVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKHP 157 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~~ 157 (160)
.++++.| .. +.+..| ++++.|+++|++++++.||||.+.++.| ++.||++++|++.++ .+|.||+..
T Consensus 307 ~lA~~lG--a~--~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~~~~idi~iv~~~ 375 (895)
T PRK10490 307 RLAQELG--AE--TATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARLGPDLDLVIVALD 375 (895)
T ss_pred HHHHHcC--CE--EEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHhCCCCCEEEEeCC
Confidence 4777788 44 445555 8999999999999999999999888877 557899999999999 999999744
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.48 E-value=7.5e-13 Score=104.19 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=109.5
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
.+|||++++++.+...+++|.++|.+.+ ++++++||..+.... ..+...+.+.....
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~--a~~~av~v~~~~~~~---------------------~~~~~~~~l~~~~~ 305 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLH--AKWTAVYVETPELHR---------------------LSEKEARRLHENLR 305 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhC--CCeEEEEEecccccc---------------------ccHHHHHHHHHHHH
Confidence 6899999999999999999999999999 899999999877542 12344556666677
Q ss_pred HHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecCCCC
Q 031383 86 VYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKHPEE 159 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~~~~ 159 (160)
++++.| .++.+.+| +.+++|.+||+.+++.-||+|.+.+..|..+|.|+.+++|++..+ ..|.+++....
T Consensus 306 Lae~lG----ae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~~~~ 377 (890)
T COG2205 306 LAEELG----AEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVALDAP 377 (890)
T ss_pred HHHHhC----CeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeCCCC
Confidence 778788 66666665 999999999999999999999999999999999999999999998 89999987553
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.75 E-value=5.9e-08 Score=57.64 Aligned_cols=84 Identities=19% Similarity=0.147 Sum_probs=70.8
Q ss_pred EEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (160)
Q Consensus 8 Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (160)
|+++++++.+|..++.++.+.+ ..+ .++.++|+-
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~--~~~~~~~~~------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGG--PEVVALVVV------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcC--CCEEEEEeH-------------------------------------------
Confidence 6899999999999999999987 334 477777765
Q ss_pred HhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeecc-chhHHHhhcCCCCEEE
Q 031383 88 RNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLG-SVSDYCAKHVKCPVVI 153 (160)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~g-s~~~~ll~~~~~pVlv 153 (160)
...+.+.+.+++.++|+|++|++.....+..+.| ++...+++.++|||+.
T Consensus 35 ----------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 ----------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred ----------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 4455677888888999999999988888888777 8999999999999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=98.39 E-value=6.3e-06 Score=67.79 Aligned_cols=148 Identities=11% Similarity=0.125 Sum_probs=91.5
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
-|||+|+...++....+..+-......+.|..++++|+++......+....+...... .+...+ .....++..+.++.
T Consensus 459 lriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~-~~~~~~-~~~~~~~i~~af~~ 536 (832)
T PLN03159 459 LRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSG-RPALNR-TQAQSDHIINAFEN 536 (832)
T ss_pred eeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeeccccc-cccccc-ccccccHHHHHHHH
Confidence 5899999998888888877655434434447999999987543221111110000000 000000 01123345554544
Q ss_pred HHHhcCCcceEEEEEec---CChhhHHHHHhhhhCCCEEEEeecCCccccee------eccchhHHHhhcCCCCEEEecC
Q 031383 86 VYRNFQNNIHVKRVVGC---GDAKDVICGTVEKLEADTLVMGSHGYGFIKRA------LLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~---g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~------~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
..+..+ .+.++..... .+..+.|...|++..+++||++.|......+. .++.+.+++++++||+|-|.=+
T Consensus 537 ~~~~~~-~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVD 615 (832)
T PLN03159 537 YEQHAG-CVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVD 615 (832)
T ss_pred HHhhcC-ceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEe
Confidence 443332 3777654432 38999999999999999999998765443332 5567889999999999988743
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.88 E-value=0.00034 Score=57.87 Aligned_cols=145 Identities=16% Similarity=0.152 Sum_probs=79.1
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCC-----CCCcccchhHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFD-----AAGYIFSNDVIKAVEKYASESVNSV 79 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (160)
..+|.++.-|.++...|+.||.++|+..+ ..++++|..+......... ++...... .....+.+++.-++.
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p~--v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~D~~~ 705 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHPG--ITLTVMRFIPGEDAAPTASQPASSPSDPRIPT--VETDGKKERQLDEEY 705 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCC--eEEEEEEEEccccccccccccccccccccccc--ccccchhHHHHHHHH
Confidence 46899999999999999999999999877 8999999986533221000 00000000 000011222344555
Q ss_pred HHHHHHHHHhcCCcceEEEE-EecC-ChhhHHHHHhhhhCCCEEEEeecCC---------ccccee-eccchhHHHhhc-
Q 031383 80 MNRAEAVYRNFQNNIHVKRV-VGCG-DAKDVICGTVEKLEADTLVMGSHGY---------GFIKRA-LLGSVSDYCAKH- 146 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~g-~~~~~i~~~a~~~~~dllvig~~~~---------~~~~~~-~~gs~~~~ll~~- 146 (160)
+++++......+ .+.+.-. +..| +....|-.... ++||+|+|+++. +.|... =+|.+-+-|...
T Consensus 706 ~~ef~~~~~~~~-~v~y~E~~V~~~~e~~~~l~~~~~--~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d 782 (832)
T PLN03159 706 INEFRARNAGNE-SIVYTEKVVSNGEETVAAIRSMDS--AHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSD 782 (832)
T ss_pred HHHHHHhcCCCC-ceEEEEEecCCHHHHHHHHHHhhc--cCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCC
Confidence 665555543323 3655544 4344 33333433322 699999996532 222221 134444444332
Q ss_pred --CCCCEEEecC
Q 031383 147 --VKCPVVIVKH 156 (160)
Q Consensus 147 --~~~pVlvv~~ 156 (160)
++..||||+.
T Consensus 783 ~~~~~SVLVvQQ 794 (832)
T PLN03159 783 FAATVSVLVVQQ 794 (832)
T ss_pred CCCceeEEEEEe
Confidence 2357888864
No 20
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.55 E-value=0.0031 Score=42.88 Aligned_cols=94 Identities=18% Similarity=0.128 Sum_probs=65.3
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
+|+|+++|..+|..++..+.+.+...+ .++.++|+-..... ......+.+...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~--~~v~~v~vd~g~~~-------------------------~~~~~~~~~~~~ 53 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLK--IRLIAAHVDHGLRP-------------------------ESDEEAEFVQQF 53 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcC--CCEEEEEeCCCCCh-------------------------hHHHHHHHHHHH
Confidence 589999999999999999988877666 58999998654321 112234455566
Q ss_pred HHhcCCcceEEEEEecC---------Chh--------hHHHHHhhhhCCCEEEEeecCCc
Q 031383 87 YRNFQNNIHVKRVVGCG---------DAK--------DVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g---------~~~--------~~i~~~a~~~~~dllvig~~~~~ 129 (160)
++..| +++....... +.. ..+.+.+++++++.|+.|++...
T Consensus 54 ~~~~g--i~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 54 CKKLN--IPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred HHHcC--CCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHH
Confidence 66677 6655433211 122 57778999999999999987544
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.32 E-value=0.0083 Score=40.63 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=62.2
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
+|+|+++|..+|..++..+..+....+ .++.++||-..... ......+.+.+.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~--~~~~~~~vdh~~~~-------------------------~s~~~~~~v~~~ 53 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNG--IKLIAVHVDHGLRE-------------------------ESDEEAEFVEEI 53 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTT--TEEEEEEEE-STSC-------------------------CHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcC--CCeEEEEEecCCCc-------------------------ccchhHHHHHHH
Confidence 699999999999999999999988888 69999999865432 111223456666
Q ss_pred HHhcCCcceEEEEEec-----C-C--------hhhHHHHHhhhhCCCEEEEeecCCcccce
Q 031383 87 YRNFQNNIHVKRVVGC-----G-D--------AKDVICGTVEKLEADTLVMGSHGYGFIKR 133 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~-----g-~--------~~~~i~~~a~~~~~dllvig~~~~~~~~~ 133 (160)
+++.+ +++...... + + ....+.++|.+++++.|++|++.....+.
T Consensus 54 ~~~~~--i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET 112 (182)
T PF01171_consen 54 CEQLG--IPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAET 112 (182)
T ss_dssp HHHTT---EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHH
T ss_pred HHhcC--CceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHH
Confidence 77777 666554332 1 1 12356688999999999999875444433
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=97.09 E-value=0.018 Score=38.85 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=64.6
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
+|+|+++|..+|..++..+.+.....+ .++.++|+-..... ...+..+.+.+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~--~~v~~v~id~~~~~-------------------------~~~~~~~~~~~~ 53 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLG--LRLVAVHVDHGLRP-------------------------ESDEEAAFVADL 53 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcC--CcEEEEEecCCCCc-------------------------hHHHHHHHHHHH
Confidence 589999999999999999988876665 68999999754321 113344455556
Q ss_pred HHhcCCcceEEEE--E-ecCCh-----------hhHHHHHhhhhCCCEEEEeecCCc
Q 031383 87 YRNFQNNIHVKRV--V-GCGDA-----------KDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 87 ~~~~~~~~~~~~~--~-~~g~~-----------~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
+...+ +++... . ..+.. ...+.++|++++++.|+.|++...
T Consensus 54 ~~~~~--i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 54 CAKLG--IPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHcC--CcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 66677 655544 1 11111 145778899999999999987544
No 23
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=96.73 E-value=0.058 Score=38.69 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=62.5
Q ss_pred CCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 031383 2 NTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (160)
Q Consensus 2 ~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
-.+..+|+|+++|..+|..++..+..+....+.+-++.++|+-...... . .+
T Consensus 26 i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~----------~-----------~~------- 77 (258)
T PRK10696 26 IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGF----------P-----------EH------- 77 (258)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCC----------C-----------HH-------
Confidence 3456799999999999998888887775543311377888875432110 0 00
Q ss_pred HHHHHHHhcCCcceEEEEEec-----------C---------ChhhHHHHHhhhhCCCEEEEeecCCccc
Q 031383 82 RAEAVYRNFQNNIHVKRVVGC-----------G---------DAKDVICGTVEKLEADTLVMGSHGYGFI 131 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-----------g---------~~~~~i~~~a~~~~~dllvig~~~~~~~ 131 (160)
.++..+++.| +++...... + -....+.++|+++++|.|++|++.....
T Consensus 78 ~~~~~~~~lg--I~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 78 VLPEYLESLG--VPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred HHHHHHHHhC--CCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 1345566677 555433111 1 0124566889999999999998754433
No 24
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=96.37 E-value=0.085 Score=35.48 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=59.3
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
+|+|+++|..+|..++..+.+.....+.+.++.++|+-...... . .+..+.++..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~----------~---------------~~~~~~~~~~ 55 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGY----------R---------------DESLEVVERL 55 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCC----------c---------------HHHHHHHHHH
Confidence 58999999999999988888876655211588888887543210 0 0112233344
Q ss_pred HHhcCCcceEEEEEec---------------------C-ChhhHHHHHhhhhCCCEEEEeecCCc
Q 031383 87 YRNFQNNIHVKRVVGC---------------------G-DAKDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~---------------------g-~~~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
+...+ +.+...... . .....+.+.+++++++.|+.|++...
T Consensus 56 ~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD 118 (185)
T cd01993 56 AEELG--IELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDD 118 (185)
T ss_pred HHHcC--CceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHH
Confidence 44555 444332211 0 12346678899999999999977533
No 25
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.048 Score=35.57 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHH---hhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~---a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.++.+.+.+++++ ++++..+.+. +..+.+.+| +++.++..+|.|..+...+.++ +...++.||+=|
T Consensus 17 ~mk~Aa~~L~~fg--i~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGm--------vAa~T~lPViGV 86 (162)
T COG0041 17 TMKKAAEILEEFG--VPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGM--------VAAKTPLPVIGV 86 (162)
T ss_pred HHHHHHHHHHHcC--CCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchh--------hhhcCCCCeEec
Confidence 4556667777888 9999888876 455555544 5667888899998877766544 556778999999
Q ss_pred cCCC
Q 031383 155 KHPE 158 (160)
Q Consensus 155 ~~~~ 158 (160)
|-+.
T Consensus 87 Pv~s 90 (162)
T COG0041 87 PVQS 90 (162)
T ss_pred cCcc
Confidence 8663
No 26
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.057 Score=39.37 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=62.3
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
.+|+|+++|..+|..++..+..+... .++.++||-...... .....+...+
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~----~~~~a~~Vd~~~~~~-------------------------~~~~~~~~~~ 72 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR----IEVEAVHVDHGLRGY-------------------------SDQEAELVEK 72 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC----ceEEEEEecCCCCCc-------------------------cchHHHHHHH
Confidence 69999999999999999988888665 388999998765431 0122333344
Q ss_pred HHHhcCCcce-EEEEEecC---------------ChhhHHHHHhhhhCCCEEEEeecCCcccce
Q 031383 86 VYRNFQNNIH-VKRVVGCG---------------DAKDVICGTVEKLEADTLVMGSHGYGFIKR 133 (160)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~g---------------~~~~~i~~~a~~~~~dllvig~~~~~~~~~ 133 (160)
.+...+.... .......+ -....+.+.|.+.++|.|++|++.....+.
T Consensus 73 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et 136 (298)
T COG0037 73 LCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAET 136 (298)
T ss_pred HHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHH
Confidence 4444441011 11111111 123356788999999999999876554433
No 27
>PRK12342 hypothetical protein; Provisional
Probab=95.24 E-value=0.19 Score=35.96 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=52.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
..++....|++.|+++. ..+ .+|+++++=++.... .+..++.+. +-.+.+
T Consensus 32 ~iNp~D~~AlE~AlrLk-~~g--~~Vtvls~Gp~~a~~----------------------~~l~r~ala----mGaD~a- 81 (254)
T PRK12342 32 KISQFDLNAIEAASQLA-TDG--DEIAALTVGGSLLQN----------------------SKVRKDVLS----RGPHSL- 81 (254)
T ss_pred cCChhhHHHHHHHHHHh-hcC--CEEEEEEeCCChHhH----------------------HHHHHHHHH----cCCCEE-
Confidence 45788999999999998 566 799999887654210 011111211 111122
Q ss_pred cceEEEEEecC-Ch---hhHHHHHhhhhCCCEEEEeecCCc
Q 031383 93 NIHVKRVVGCG-DA---KDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 93 ~~~~~~~~~~g-~~---~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
+-+.-....| |. +..|...++..++|||+.|.....
T Consensus 82 -vli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D 121 (254)
T PRK12342 82 -YLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGD 121 (254)
T ss_pred -EEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCccc
Confidence 3333222233 54 678888888889999999965433
No 28
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=95.20 E-value=0.78 Score=34.69 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=30.7
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
|-.+.++|+|+++|.-+|..++..+.+. + -++..+|+..
T Consensus 1 ~~~~~~kVlValSGGVDSsvaa~LL~~~----G--~~V~~v~~~~ 39 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTDSSVAAMLLLEA----G--YEVTGVTFRF 39 (360)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHHc----C--CeEEEEEEec
Confidence 5567789999999999998887777653 5 5888888763
No 29
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=95.19 E-value=0.24 Score=32.71 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHH---hhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~---a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| ++++..+..- +..+.+.++ +++.+++++|.+....+.+.+ -+...++.||+-|
T Consensus 13 ~~~~a~~~L~~~g--i~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpg--------vva~~t~~PVIgv 82 (156)
T TIGR01162 13 TMKKAADILEEFG--IPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPG--------MVAALTPLPVIGV 82 (156)
T ss_pred HHHHHHHHHHHcC--CCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHH--------HHHhccCCCEEEe
Confidence 5566677778888 8898888775 444555555 455678888888666555443 3666778999999
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
|..
T Consensus 83 P~~ 85 (156)
T TIGR01162 83 PVP 85 (156)
T ss_pred cCC
Confidence 864
No 30
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=95.15 E-value=0.56 Score=31.07 Aligned_cols=87 Identities=10% Similarity=0.114 Sum_probs=56.2
Q ss_pred EEEEEecC-----ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDE-----SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (160)
Q Consensus 7 ~Ilv~~d~-----s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
+|||-.+. ++.+..++..|.+++...+ .++.++.+=+... ..+
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g--~~v~av~~G~~~~------------------------------~~~ 48 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALG--GEVTAVVLGPAEE------------------------------AAE 48 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTT--SEEEEEEEETCCC------------------------------HHH
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcC--CeEEEEEEecchh------------------------------hHH
Confidence 35666544 3889999999999999988 7998887763221 223
Q ss_pred HHHHHHHhcCCcceEEEEEecC--------ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCG--------DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g--------~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.+++.+..+| ..--..+... ...+.|.+.+++.++|+|++|...
T Consensus 49 ~l~~~l~~~G--~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 49 ALRKALAKYG--ADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp HHHHHHHSTT--ESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred HHhhhhhhcC--CcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 3444555566 4322222221 245578888999999999999654
No 31
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.10 E-value=0.53 Score=36.67 Aligned_cols=91 Identities=10% Similarity=-0.005 Sum_probs=65.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
|..-....||..|++.|...+ .+|.+++++++..... ......-..+.+..+.+.+++.|
T Consensus 32 DLRl~DN~aL~~A~~~a~~~~--~~vl~vyi~dp~~~~~-----------------~~~r~~Fl~esL~~L~~~L~~~g- 91 (454)
T TIGR00591 32 DQRVQDNWALIAAQTLALKKK--LPLHVCFCLVDFFLAA-----------------TRRHYFFMLGGLDEVANECERLI- 91 (454)
T ss_pred chhccCCHHHHHHHHHHHHcC--CCEEEEEEeCCCcccc-----------------cHHHHHHHHHHHHHHHHHHHHcC-
Confidence 444556678888888766555 4799999998754320 12334555556666777777777
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+...+..|++.+.|.+.+++++++.|+....
T Consensus 92 ---~~L~v~~g~~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 92 ---IPFHLLDGPPKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred ---CceEEeecChHHHHHHHHHHcCCCEEEEecc
Confidence 4456678999999999999999999999753
No 32
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=94.73 E-value=0.35 Score=31.74 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhh---hCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEK---LEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~---~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| +.++..+... ...+.+.+++++ .+++++|.+....+.+.. -+...++.||+-|
T Consensus 15 ~~~~a~~~L~~~g--i~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpg--------vva~~t~~PVIgv 84 (150)
T PF00731_consen 15 IAEEAAKTLEEFG--IPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPG--------VVASLTTLPVIGV 84 (150)
T ss_dssp HHHHHHHHHHHTT---EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHH--------HHHHHSSS-EEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchh--------hheeccCCCEEEe
Confidence 5567777788888 9999888876 555666666554 467888887665555433 3666778999999
Q ss_pred cCCC
Q 031383 155 KHPE 158 (160)
Q Consensus 155 ~~~~ 158 (160)
|...
T Consensus 85 P~~~ 88 (150)
T PF00731_consen 85 PVSS 88 (150)
T ss_dssp EE-S
T ss_pred ecCc
Confidence 8553
No 33
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=94.47 E-value=0.45 Score=31.57 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceE
Q 031383 17 ESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHV 96 (160)
Q Consensus 17 ~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (160)
....||..|++. + .+|..++++++.... +.. . .........+.+..+...+++.| +
T Consensus 12 ~DN~aL~~A~~~----~--~~v~~vfv~d~~~~~-~~~------~-------~~~r~~Fl~~sL~~L~~~L~~~g----~ 67 (165)
T PF00875_consen 12 HDNPALHAAAQN----G--DPVLPVFVFDPEEFH-PYR------I-------GPRRRRFLLESLADLQESLRKLG----I 67 (165)
T ss_dssp TT-HHHHHHHHT----T--SEEEEEEEE-HHGGT-TCS------S-------CHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred hhhHHHHHHHHc----C--CCeEEEEEecccccc-ccc------C-------cchHHHHHHHHHHHHHHHHHhcC----c
Confidence 345677777444 4 489999999877211 100 0 02233455556666666667677 6
Q ss_pred EEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 97 KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 97 ~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
...+..|++.+.|.+.+++.+++.|+....- +.... -...-..+.+.+..+.+..+.
T Consensus 68 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~-~rd~~v~~~l~~~~i~~~~~~ 124 (165)
T PF00875_consen 68 PLLVLRGDPEEVLPELAKEYGATAVYFNEEY-TPYER-RRDERVRKALKKHGIKVHTFD 124 (165)
T ss_dssp -EEEEESSHHHHHHHHHHHHTESEEEEE----SHHHH-HHHHHHHHHHHHTTSEEEEE-
T ss_pred ceEEEecchHHHHHHHHHhcCcCeeEecccc-CHHHH-HHHHHHHHHHHhcceEEEEEC
Confidence 6788889999999999999999999987442 22222 122334455555567766554
No 34
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=94.19 E-value=1.4 Score=32.56 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=33.3
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLP 48 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~ 48 (160)
+.++++.++|..+|...+..+.+.....+ .++.++|+-....
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~--~~~~vl~iDTG~~ 68 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGK--LPFPLLHVDTGWK 68 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccC--CCeeEEEEeCCCC
Confidence 56899999999999999988877655434 5788999986653
No 35
>PRK13820 argininosuccinate synthase; Provisional
Probab=94.03 E-value=1.8 Score=33.21 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=29.8
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCC-eEEEEEEeCC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNN-TLVLLYVKPP 46 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a-~l~~l~v~~~ 46 (160)
++++|+|+++|.-+|..++.++.+. .+ . ++.++|+...
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e~---~g--~~~Viav~vd~g 39 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKEK---YG--YDEVITVTVDVG 39 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHHh---cC--CCEEEEEEEECC
Confidence 3589999999999999888887543 23 3 8999998753
No 36
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=93.97 E-value=0.66 Score=36.04 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=32.5
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcC-CCCCCCeEEEEEEeCCC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLF-SPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~-~~~~~a~l~~l~v~~~~ 47 (160)
+.++|+|+++|..+|...+..+..+.. ..+ -++.++||-...
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~--~~l~a~hvnhgl 56 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPG--VTLRAIHVHHGL 56 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCC--CeEEEEEEeCCC
Confidence 347899999999999988888877642 234 589999997544
No 37
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=93.96 E-value=1.6 Score=31.20 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=29.3
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
..++++|+++|.-+|..++..+.+. + .++..+|+..
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g--~~v~av~~~~ 46 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----G--TEVLAITVVS 46 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----C--CCEEEEEecC
Confidence 4578999999999999888888765 4 4788888864
No 38
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=93.71 E-value=0.54 Score=33.77 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=53.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
-.+++...|++.|+++..+.+. .+|+++.+=++.... ....++.+. +-.+.+
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g-~~Vtvvs~Gp~~a~~----------------------~~~lr~aLA----mGaD~a- 84 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAE-AQVTALSVGGKALTN----------------------AKGRKDVLS----RGPDEL- 84 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCC-CEEEEEEECCcchhh----------------------HHHHHHHHH----cCCCEE-
Confidence 3578899999999999887532 599999887655220 011222221 111222
Q ss_pred cceEEEEEecC----ChhhHHHHHhhhhCCCEEEEeecCCc
Q 031383 93 NIHVKRVVGCG----DAKDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 93 ~~~~~~~~~~g----~~~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
+-+.-....| ..+..|...+++.++|||+.|.....
T Consensus 85 -vli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D 124 (256)
T PRK03359 85 -IVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSD 124 (256)
T ss_pred -EEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCcccc
Confidence 3333222223 34667778888889999999965533
No 39
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.48 E-value=1.6 Score=29.98 Aligned_cols=112 Identities=9% Similarity=0.015 Sum_probs=65.3
Q ss_pred EEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (160)
Q Consensus 8 Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (160)
++|.-.|+--...+++.|.++... + .++.++..-..... ..++++..+
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~--~~v~lis~D~~R~g-----------------------------a~eQL~~~a 52 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-G--KKVALISADTYRIG-----------------------------AVEQLKTYA 52 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T----EEEEEESTSSTH-----------------------------HHHHHHHHH
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-c--ccceeecCCCCCcc-----------------------------HHHHHHHHH
Confidence 455567777777889999998877 6 58877775433321 344555566
Q ss_pred HhcCCcceEEEEEecCChhh---HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc-CCCCEEEe
Q 031383 88 RNFQNNIHVKRVVGCGDAKD---VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH-VKCPVVIV 154 (160)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~~---~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~-~~~pVlvv 154 (160)
+..+ +++.......++.+ ..++..+..++|+|++-+.|++........... .++.. .+..+++|
T Consensus 53 ~~l~--vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~-~~~~~~~~~~~~LV 120 (196)
T PF00448_consen 53 EILG--VPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELK-KLLEALNPDEVHLV 120 (196)
T ss_dssp HHHT--EEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHH-HHHHHHSSSEEEEE
T ss_pred HHhc--cccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHH-HHhhhcCCccceEE
Confidence 6666 55544333334444 344555667899999999888875544333332 33333 34555554
No 40
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=93.32 E-value=0.8 Score=32.97 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=53.7
Q ss_pred ecCChHHHHHHHHHHHhcC-CCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031383 12 VDESEESMHALSWCLNNLF-SPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNF 90 (160)
Q Consensus 12 ~d~s~~s~~al~~a~~~a~-~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (160)
..-++....|++.|+++.. ..+ .+++++++=++... +..+..+. +-.+.
T Consensus 33 ~~in~~D~~AvEeAlrLke~~~~--~eV~vlt~Gp~~a~------------------------~~lr~aLA----mGaDr 82 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEKGYG--GEVTVLTMGPPQAE------------------------EALREALA----MGADR 82 (260)
T ss_pred cccChhhHHHHHHHHHhhccCCC--ceEEEEEecchhhH------------------------HHHHHHHh----cCCCe
Confidence 3446888999999999998 466 79999998765422 11111111 11111
Q ss_pred CCcceEEEEEecC----ChhhHHHHHhhhhCCCEEEEeecCC
Q 031383 91 QNNIHVKRVVGCG----DAKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 91 ~~~~~~~~~~~~g----~~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
. +-++-....+ ..+..|...++..+.|||++|...-
T Consensus 83 a--ili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~ 122 (260)
T COG2086 83 A--ILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAI 122 (260)
T ss_pred E--EEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 1 3333212223 4667888889999999999996543
No 41
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=92.48 E-value=3.9 Score=31.66 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=59.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCc-CCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHS-SFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQ 91 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (160)
|..-....||.+|+.. + .+|..|+++++..... .... ... .......-..+.++.+.+.+++.|
T Consensus 10 DLRl~DN~aL~~A~~~----~--~~vl~vfi~dp~~~~~~~~~~-----~~~----~~~~r~~Fl~esL~~L~~~L~~~g 74 (429)
T TIGR02765 10 DLRVHDNPALYKASSS----S--DTLIPLYCFDPRQFKLTHFFG-----FPK----TGPARGKFLLESLKDLRTSLRKLG 74 (429)
T ss_pred CCccccHHHHHHHHhc----C--CeEEEEEEECchHhccccccc-----cCC----CCHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444456688877754 3 3789999998753320 0000 000 012223445556666666677777
Q ss_pred CcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 92 NNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 92 ~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+...+..|++.+.|.+.+++.+++.|+....
T Consensus 75 ----~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 75 ----SDLLVRSGKPEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred ----CCeEEEeCCHHHHHHHHHHHhCCCEEEEecc
Confidence 4446678999999999999999999999744
No 42
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=92.11 E-value=1.1 Score=37.48 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=35.6
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPV 49 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~ 49 (160)
..+|.+..-+.++...|+.++.+++.... ..+++++.++....
T Consensus 614 ~~~v~~lF~GG~DDrEALa~~~rm~~~~~--v~lTVirf~~~~~~ 656 (769)
T KOG1650|consen 614 SYKVVVLFLGGKDDREALALAKRMAENPR--VTLTVIRFFPDESK 656 (769)
T ss_pred eeEEEEEecCChhhHHHHHHHHHHhhCCc--eEEEEEEeeccchh
Confidence 34677777788888889999999999777 89999999976643
No 43
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=90.73 E-value=1.9 Score=31.98 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=33.8
Q ss_pred EEEecC-ChhhHHHHHhhhh-------CCCEEEEeecCCcccceeeccc-hhHHHhhcCCCCEEEe
Q 031383 98 RVVGCG-DAKDVICGTVEKL-------EADTLVMGSHGYGFIKRALLGS-VSDYCAKHVKCPVVIV 154 (160)
Q Consensus 98 ~~~~~g-~~~~~i~~~a~~~-------~~dllvig~~~~~~~~~~~~gs-~~~~ll~~~~~pVlvv 154 (160)
+...-| +....|++..+.. .+|+||+++.|.+.-.-+-|.+ ..-.-+..+++||+.=
T Consensus 48 p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 48 PASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISA 113 (319)
T ss_pred eccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEe
Confidence 444445 6666676554432 4899999965544322233332 4455667788998764
No 44
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=90.49 E-value=6.3 Score=29.95 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=28.7
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
|..+.++|+|+++|.-+|..++..+.+ .+ -++..+|+.
T Consensus 1 ~~~~~~kVlVa~SGGvDSsv~a~lL~~----~G--~eV~av~~~ 38 (362)
T PRK14664 1 MKESKKRVLVGMSGGIDSTATCLMLQE----QG--YEIVGVTMR 38 (362)
T ss_pred CCCCCCEEEEEEeCCHHHHHHHHHHHH----cC--CcEEEEEec
Confidence 667789999999999888877665433 35 478888874
No 45
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=90.06 E-value=4 Score=27.03 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=25.6
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
+|++.+.|.-+|..++..+.+. + -++.++|+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~--~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----G--YEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----C--CcEEEEEEEC
Confidence 5899999999999888777653 4 3788888864
No 46
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=89.79 E-value=1 Score=29.00 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=44.0
Q ss_pred eEEEEEec--CChhhHHHHHhhhhCCCEEEEeecC----CcccceeeccchhHHHhhcC-CCCEEEecCCC
Q 031383 95 HVKRVVGC--GDAKDVICGTVEKLEADTLVMGSHG----YGFIKRALLGSVSDYCAKHV-KCPVVIVKHPE 158 (160)
Q Consensus 95 ~~~~~~~~--g~~~~~i~~~a~~~~~dllvig~~~----~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~~ 158 (160)
++.+.... +...+.|.+.+++++++.+|+|-.- ..+......-..++.|-... ++||..+.+..
T Consensus 27 pl~~i~~~~~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~ 97 (135)
T PF03652_consen 27 PLETIPRRNREKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERL 97 (135)
T ss_dssp EEEEEEECCCCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSC
T ss_pred eeEEEECCCCchHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCCh
Confidence 34444444 3789999999999999999999531 11122222344667777887 89999987654
No 47
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=89.74 E-value=5.9 Score=28.49 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=58.3
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
..+++|+++|.-+|...+..|...+. . ++.++.+..+.... +.++.+.
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG--~---~v~AvTv~sP~~p~---------------------------~e~e~A~ 64 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALG--D---NVVAVTVDSPYIPR---------------------------REIEEAK 64 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHhc--c---ceEEEEEecCCCCh---------------------------hhhhHHH
Confidence 35999999999888877777777665 3 77888887755431 2333444
Q ss_pred HHHHhcCCcceEEEEE-----------------ec-CChhhHHHHHhhhhCCCEEEEeec
Q 031383 85 AVYRNFQNNIHVKRVV-----------------GC-GDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~-----------------~~-g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
..+++.| +..+..- .+ ....+.|.+.+.+.++|.|+=|+.
T Consensus 65 ~~A~~iG--i~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtN 122 (269)
T COG1606 65 NIAKEIG--IRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTN 122 (269)
T ss_pred HHHHHhC--CcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCc
Confidence 4455555 3222110 11 246678899999999999999864
No 48
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=89.44 E-value=5.3 Score=27.52 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=56.1
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
++|.|-++++-....|+--|+. ....+ +++.+|-.-.++.+ ..+
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~--a~i~~Visd~~~A~---------------------------------~le 44 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLD--AEIVAVISDKADAY---------------------------------ALE 44 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCC--cEEEEEEeCCCCCH---------------------------------HHH
Confidence 3788888888888888888888 44444 67777766554533 223
Q ss_pred HHHhcCCcceEEEEEecC-----ChhhHHHHHhhhhCCCEEEEee
Q 031383 86 VYRNFQNNIHVKRVVGCG-----DAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g-----~~~~~i~~~a~~~~~dllvig~ 125 (160)
.+++.| ++....-... ....+|.+..++.++|+||+..
T Consensus 45 rA~~~g--Ipt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 45 RAAKAG--IPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred HHHHcC--CCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 445566 6654443333 2567899999999999999964
No 49
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=89.18 E-value=4.5 Score=31.81 Aligned_cols=90 Identities=12% Similarity=0.099 Sum_probs=58.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
|..-....||..|+.. + .+|.+++++++....... .......-.-+.+..+...+++.|
T Consensus 10 DLRl~DN~AL~~A~~~----~--~~vl~vfi~dp~~~~~~~--------------~~~~r~~Fl~esL~~L~~~L~~~G- 68 (471)
T TIGR03556 10 DLRLSDNIGLAAARQQ----S--AKVVGLFCLDPNILQADD--------------MAPARVAYLIGCLQELQQRYQQAG- 68 (471)
T ss_pred CCCcchHHHHHHHHhc----C--CCEEEEEEEchhhhcccc--------------CCHHHHHHHHHHHHHHHHHHHHCC-
Confidence 3334456678777742 3 479999999865321100 001112344555566666677777
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+...+..|++.+.|.+.+++.+++.|+....
T Consensus 69 ---~~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 69 ---SQLLILQGDPVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred ---CCeEEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 4456678999999999999999999998643
No 50
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=89.04 E-value=5.8 Score=27.41 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=25.1
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPV 49 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~ 49 (160)
-.++|+.++|.-+|.-|.-.. .+.+ .+|..||...+...
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm----~krG--~~V~~l~f~~~~~~ 41 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLM----MKRG--CEVIALHFDSPPFT 41 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHH----HCBT---EEEEEEEE-TTTS
T ss_pred CceEEEEecCCccHHHHHHHH----HHCC--CEEEEEEEECCCCC
Confidence 368899998887777554443 4447 89999999865443
No 51
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=88.83 E-value=7.7 Score=28.59 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=33.2
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPV 49 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~ 49 (160)
+.++++++++..+|..++..+.+.....+ .++.+||+-....+
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~--~p~~vl~IDTG~~F 61 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGP--LPFPLLHVDTGWKF 61 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccC--CCeEEEEEecCCCC
Confidence 45667889999999999988887765444 58899999876643
No 52
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=88.83 E-value=1.1 Score=27.23 Aligned_cols=65 Identities=6% Similarity=0.051 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+.+..++.+++.| ++++... -...++.++.. ++|++++|..-+..+. ..+........||.+++.
T Consensus 16 la~km~~~a~~~g--i~~~i~a---~~~~e~~~~~~--~~Dvill~PQv~~~~~------~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 16 LANALNKGAKERG--VPLEAAA---GAYGSHYDMIP--DYDLVILAPQMASYYD------ELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHHHHHHHHHCC--CcEEEEE---eeHHHHHHhcc--CCCEEEEcChHHHHHH------HHHHHhhhcCCCEEEeCH
Confidence 4455666677788 6665432 22334555555 7899999976554433 335677777899988874
No 53
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.58 E-value=9.4 Score=29.75 Aligned_cols=96 Identities=10% Similarity=0.080 Sum_probs=64.0
Q ss_pred EEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR 88 (160)
Q Consensus 9 lv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (160)
+|.+-+|--.-.+...|.++-+ .+ -++.++..-...+. ..++++.+.+
T Consensus 105 mvGLQGsGKTTt~~KLA~~lkk-~~--~kvllVaaD~~RpA-----------------------------A~eQL~~La~ 152 (451)
T COG0541 105 MVGLQGSGKTTTAGKLAKYLKK-KG--KKVLLVAADTYRPA-----------------------------AIEQLKQLAE 152 (451)
T ss_pred EEeccCCChHhHHHHHHHHHHH-cC--CceEEEecccCChH-----------------------------HHHHHHHHHH
Confidence 4557888777788888888877 45 35555554322211 4456666667
Q ss_pred hcCCcceEEEEEecCC---hhhHHHHHhhhhCCCEEEEeecCCcccceeeccc
Q 031383 89 NFQNNIHVKRVVGCGD---AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGS 138 (160)
Q Consensus 89 ~~~~~~~~~~~~~~g~---~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs 138 (160)
+.+ +++-......+ .+..-+++++++.+|+||+-+-||-.+..-++.-
T Consensus 153 q~~--v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~E 203 (451)
T COG0541 153 QVG--VPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDE 203 (451)
T ss_pred HcC--CceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHH
Confidence 777 66655422223 4467788899999999999999988887665543
No 54
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=88.56 E-value=1 Score=29.14 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=38.3
Q ss_pred hhhHHHHHhhhhCCCEEEEeec-CCccc---ceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSH-GYGFI---KRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~-~~~~~---~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
..+.|.+++++++++.+|+|-. ..++. ........++.|-...++||..+.+..
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 5789999999999999999932 22221 112334567777777789999987654
No 55
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=88.27 E-value=1.1 Score=27.04 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+.+.+++.+++.| ++++..... . .++.+... ++|+++++.+-+.... ..+.+....++||.++++.
T Consensus 19 l~~k~~~~~~~~g--i~~~v~a~~--~-~~~~~~~~--~~Dvill~pqi~~~~~------~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 19 LVNKMNKAAEEYG--VPVKIAAGS--Y-GAAGEKLD--DADVVLLAPQVAYMLP------DLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHHHHHHHHHHCC--CcEEEEEec--H-HHHHhhcC--CCCEEEECchHHHHHH------HHHHHhhhcCCCEEEeChh
Confidence 4456666677777 665543322 2 22333444 7899999866544333 3356777788999999764
No 56
>PLN00200 argininosuccinate synthase; Provisional
Probab=87.76 E-value=11 Score=29.14 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=30.8
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
++++|+|+++|.-+|..++.++.+. .+ .+++.+++....
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e~---~G--~eViav~id~Gq 42 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLREN---YG--CEVVCFTADVGQ 42 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHh---hC--CeEEEEEEECCC
Confidence 3579999999999999888888662 35 589999987543
No 57
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=87.64 E-value=3.7 Score=33.23 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecC-ChhhH---HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDV---ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~---i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..++.+...++++| ++++..+..- +..+. +.+.+++.+++++|.+....+.+.+ -+...+++||+-
T Consensus 424 ~~~~~~~~~l~~~g--~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~--------~~a~~t~~pvi~ 493 (577)
T PLN02948 424 PTMKDAAEILDSFG--VPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPG--------MVASMTPLPVIG 493 (577)
T ss_pred HHHHHHHHHHHHcC--CCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchH--------HHhhccCCCEEE
Confidence 36677778888899 8888877765 44444 4455666789988888666555443 356677899999
Q ss_pred ecCC
Q 031383 154 VKHP 157 (160)
Q Consensus 154 v~~~ 157 (160)
||..
T Consensus 494 vp~~ 497 (577)
T PLN02948 494 VPVK 497 (577)
T ss_pred cCCC
Confidence 9875
No 58
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=87.22 E-value=4.4 Score=31.51 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=35.3
Q ss_pred ceEEEEEecC-ChhhHHHHHhhhh---CCCEEEEeecCCcccce-eeccc-hhHHHhhcCCCCEEEe
Q 031383 94 IHVKRVVGCG-DAKDVICGTVEKL---EADTLVMGSHGYGFIKR-ALLGS-VSDYCAKHVKCPVVIV 154 (160)
Q Consensus 94 ~~~~~~~~~g-~~~~~i~~~a~~~---~~dllvig~~~~~~~~~-~~~gs-~~~~ll~~~~~pVlvv 154 (160)
+.+-+...-| .....|++..+.. ++|+||+++.|.+ .+. +-|.. ..-.-+.++++||+.=
T Consensus 165 ~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS-~eDL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 165 VIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS-LEDLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred EEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC-HHHhhccCcHHHHHHHHcCCCCEEEe
Confidence 3333444446 6777777654433 3699999965543 333 33332 4445667789998864
No 59
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=85.60 E-value=7.7 Score=25.21 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=28.2
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
+|+|+++|..+|..++..+.+...... ++.++|+....
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~---~~~~v~~dtg~ 38 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELK---PVPVIFLDTGY 38 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhccccc---CceEEEeCCCC
Confidence 588999999999988888877644321 67788876544
No 60
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=85.43 E-value=14 Score=27.92 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=26.1
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
++|+|++++.-+|..++..+.+. + -++..+|+..
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~----G--~~V~~v~~~~ 34 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQ----G--YEVIGVFMKL 34 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHc----C--CcEEEEEEeC
Confidence 48999999999888877666542 4 4788888864
No 61
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=84.82 E-value=8.1 Score=30.09 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhh---hh-CCCEEEEeecCCccccee--eccchhHHHhhcC
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KL-EADTLVMGSHGYGFIKRA--LLGSVSDYCAKHV 147 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~-~~dllvig~~~~~~~~~~--~~gs~~~~ll~~~ 147 (160)
-.++.+..++....... +-+-+...-| +...+|++.++ .. .+|+||+|+.| +.++.+ |..-..-+-+..+
T Consensus 148 airDIl~~~~rR~P~~~--viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG-GSiEDLW~FNdE~vaRAi~~s 224 (440)
T COG1570 148 ALRDILHTLSRRFPSVE--VIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG-GSIEDLWAFNDEIVARAIAAS 224 (440)
T ss_pred HHHHHHHHHHhhCCCCe--EEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc-chHHHHhccChHHHHHHHHhC
Confidence 33444444444433333 4444444445 67777775543 33 49999999554 445542 2233444566778
Q ss_pred CCCEEEe
Q 031383 148 KCPVVIV 154 (160)
Q Consensus 148 ~~pVlvv 154 (160)
++||+--
T Consensus 225 ~iPvISA 231 (440)
T COG1570 225 RIPVISA 231 (440)
T ss_pred CCCeEee
Confidence 8998743
No 62
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=84.72 E-value=10 Score=25.88 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=52.7
Q ss_pred EEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (160)
Q Consensus 8 Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (160)
|+|+++|.-+|..++..+.+.. + .++.++|+...... ..-.+.++..+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~--~~v~~v~vd~g~~~---------------------------~~~~~~~~~~a 48 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---G--DRVLAVTATSPLFP---------------------------RRELEEAKRLA 48 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---C--CcEEEEEeCCCCCC---------------------------HHHHHHHHHHH
Confidence 6889999999988887776652 2 26788888644311 01223333444
Q ss_pred HhcCCcceEEEEEec------------------C-ChhhHHHHHhhhhCCCEEEEeecCC
Q 031383 88 RNFQNNIHVKRVVGC------------------G-DAKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 88 ~~~~~~~~~~~~~~~------------------g-~~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
+..| ++....... . -....+.+++++++++.|+.|.+..
T Consensus 49 ~~lg--i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 49 KEIG--IRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred HHcC--CcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 5555 443332111 0 2233566788999999999997643
No 63
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=84.47 E-value=9.8 Score=25.42 Aligned_cols=35 Identities=9% Similarity=-0.027 Sum_probs=28.6
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
+|+|+++|.-+|..++.++.+. + .+++++|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g--~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----G--IEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----C--CeEEEEEEeCCC
Confidence 5899999999999888888763 5 589999998654
No 64
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=84.41 E-value=15 Score=27.41 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=34.2
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPV 49 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~ 49 (160)
+.++++++++..+|..++..+.+.+...+ .++-+|||-....+
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~--~~~pvl~VDTG~~F 79 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTR--PPFPLLHVDTTWKF 79 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccC--CCeeEEEeCCCCCC
Confidence 45788899999999999999988765545 58899999776654
No 65
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=84.30 E-value=8.6 Score=29.96 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=34.9
Q ss_pred ceEEEEEecC-ChhhHHHHHhh----hhCCCEEEEeecCCcccceeeccc-hhHHHhhcCCCCEEEe
Q 031383 94 IHVKRVVGCG-DAKDVICGTVE----KLEADTLVMGSHGYGFIKRALLGS-VSDYCAKHVKCPVVIV 154 (160)
Q Consensus 94 ~~~~~~~~~g-~~~~~i~~~a~----~~~~dllvig~~~~~~~~~~~~gs-~~~~ll~~~~~pVlvv 154 (160)
+.+-+...-| .....|++..+ ..++|+||+++.|.+.-.-+.|.+ ..-.-+..+++||+.-
T Consensus 159 ~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 159 VVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred EEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEe
Confidence 3333444445 66666665443 234799999965544333233333 3444567888999864
No 66
>PRK10867 signal recognition particle protein; Provisional
Probab=83.95 E-value=19 Score=28.22 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=51.8
Q ss_pred EEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR 88 (160)
Q Consensus 9 lv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (160)
++...|+--+..+...|..++...+ -.+.++..-..... ..+++....+
T Consensus 105 ~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~a-----------------------------a~eQL~~~a~ 153 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRPA-----------------------------AIEQLKTLGE 153 (433)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccchH-----------------------------HHHHHHHHHh
Confidence 3445666667788888888876634 35665554321110 1122333344
Q ss_pred hcCCcceEEEEEecCChhh---HHHHHhhhhCCCEEEEeecCCcccce
Q 031383 89 NFQNNIHVKRVVGCGDAKD---VICGTVEKLEADTLVMGSHGYGFIKR 133 (160)
Q Consensus 89 ~~~~~~~~~~~~~~g~~~~---~i~~~a~~~~~dllvig~~~~~~~~~ 133 (160)
+.+ +++.......++.+ ..++.++..++|+|++-+.++.....
T Consensus 154 ~~g--v~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~ 199 (433)
T PRK10867 154 QIG--VPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDE 199 (433)
T ss_pred hcC--CeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCH
Confidence 455 65543322224333 34456677789999999888765443
No 67
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=83.87 E-value=0.98 Score=27.52 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=20.7
Q ss_pred cCChhhHHHHHhhhhCCCEEEEeec
Q 031383 102 CGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 102 ~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
.-.-.+.|.++++++++|++|+|..
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESSH
T ss_pred CCCCHHHHHHHHHHcCCCEEEECCh
Confidence 3477889999999999999999964
No 68
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=83.83 E-value=2.5 Score=27.01 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=38.5
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec----CCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH----GYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~----~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
...+.|.+.+++++++.+|+|-. +..+-........++.|-++.+.||..+.+..
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~ 93 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERL 93 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 55788999999999999999932 11111112233466777777789999987654
No 69
>PRK11914 diacylglycerol kinase; Reviewed
Probab=83.57 E-value=11 Score=27.74 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
.+++...+++.+ ..+...... ...+..+.+.+.+.++|+||+..- -+.+. ..++.+. ..+.|+-++|-..
T Consensus 28 ~~~~~~~l~~~g--~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GG-DGTi~-----evv~~l~-~~~~~lgiiP~GT 98 (306)
T PRK11914 28 AERAIARLHHRG--VDVVEIVGTDAHDARHLVAAALAKGTDALVVVGG-DGVIS-----NALQVLA-GTDIPLGIIPAGT 98 (306)
T ss_pred HHHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECC-chHHH-----HHhHHhc-cCCCcEEEEeCCC
Confidence 334444556666 665544333 345667776666678897776532 23232 2334443 4568899998654
Q ss_pred C
Q 031383 159 E 159 (160)
Q Consensus 159 ~ 159 (160)
.
T Consensus 99 ~ 99 (306)
T PRK11914 99 G 99 (306)
T ss_pred c
Confidence 3
No 70
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=83.42 E-value=18 Score=27.61 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=29.4
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
.-.++++.++|.-+|..|+.++.+. + .++.++|+...
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~kr----G--~~V~av~~~~~ 207 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKR----G--CRVVAVHFFNE 207 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHc----C--CeEEEEEEeCC
Confidence 4578999999998898888777553 6 69999999743
No 71
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=83.18 E-value=4.4 Score=24.87 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+.+..++.+++.| ++++.... + ..++.++....++|++++|.+-+.... ....+...-++||.++++
T Consensus 17 la~k~k~~~~e~g--i~~~i~a~--~-~~e~~~~~~~~~~DvIll~PQi~~~~~------~i~~~~~~~~ipv~~I~~ 83 (104)
T PRK09590 17 MAKKTTEYLKEQG--KDIEVDAI--T-ATEGEKAIAAAEYDLYLVSPQTKMYFK------QFEEAGAKVGKPVVQIPP 83 (104)
T ss_pred HHHHHHHHHHHCC--CceEEEEe--c-HHHHHHhhccCCCCEEEEChHHHHHHH------HHHHHhhhcCCCEEEeCH
Confidence 4444556666777 65443322 2 223555555557999999965443332 235666667899999875
No 72
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=82.86 E-value=3 Score=25.05 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+.+.+++.+++.| ++++.... +.. ++..+.. ++|+|+++.+-+..... .+.......+||.++++.
T Consensus 15 ~~~ki~~~~~~~~--~~~~v~~~--~~~-~~~~~~~--~~Diil~~Pqv~~~~~~------i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 15 LVKKMKKAAEKRG--IDAEIEAV--PES-ELEEYID--DADVVLLGPQVRYMLDE------VKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHHHHHHHCC--CceEEEEe--cHH-HHHHhcC--CCCEEEEChhHHHHHHH------HHHHhccCCCcEEEcChH
Confidence 3456677777788 65443322 222 2333444 78999998654443322 234455668999999864
No 73
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=82.63 E-value=20 Score=27.65 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=28.0
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
+|+++++|.-+|..++.++.+. + .++.++|+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g--~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----G--YEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----C--CEEEEEEEecC
Confidence 5899999999999888887664 5 58999999754
No 74
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=82.25 E-value=13 Score=28.75 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=27.2
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
..++|++.+.||-.+-.++++.-.+.+ .+ .++.++.
T Consensus 5 ~~k~IllgvTGsiaa~k~~~lv~~L~~-~g--~~V~vv~ 40 (399)
T PRK05579 5 AGKRIVLGVSGGIAAYKALELVRRLRK-AG--ADVRVVM 40 (399)
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHHHh-CC--CEEEEEE
Confidence 458999999999888888888877744 45 5666544
No 75
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=82.04 E-value=21 Score=29.08 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=55.2
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
.++|+|..|..-+.-.+........+..+ +.- +.+.++ .....+++.+ . . ..+.
T Consensus 69 ~e~I~I~gDyD~DGitstail~~~L~~~g--~~~-~~~~IP-~R~~eGYGl~-----~-----------~----~i~~-- 122 (575)
T PRK11070 69 GTRIIVVGDFDADGATSTALSVLALRSLG--CSN-VDYLVP-NRFEDGYGLS-----P-----------E----VVDQ-- 122 (575)
T ss_pred CCEEEEEEecCccHHHHHHHHHHHHHHcC--CCc-eEEEeC-CCCcCCCCCC-----H-----------H----HHHH--
Confidence 47899998887665555555566556555 322 222333 2222222211 0 1 1111
Q ss_pred HHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
+.+.+ ...-..+..|...-+-++++++.++|+||+.+|.
T Consensus 123 --~~~~~--~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~ 161 (575)
T PRK11070 123 --AHARG--AQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHL 161 (575)
T ss_pred --HHhcC--CCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCC
Confidence 11234 5677777888777788899999999999999774
No 76
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=81.67 E-value=23 Score=27.68 Aligned_cols=94 Identities=10% Similarity=0.028 Sum_probs=52.0
Q ss_pred EEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR 88 (160)
Q Consensus 9 lv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (160)
++...|+--+-.+...|..+.+. + ..+.++..-.... ...++++...+
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~~~-G--~kV~lV~~D~~R~-----------------------------aA~eQLk~~a~ 152 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQRK-G--FKPCLVCADTFRA-----------------------------GAFDQLKQNAT 152 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHHHC-C--CCEEEEcCcccch-----------------------------hHHHHHHHHhh
Confidence 44456776677778888776543 4 3565554321110 12233334444
Q ss_pred hcCCcceEEEEEecCChhh---HHHHHhhhhCCCEEEEeecCCcccceeec
Q 031383 89 NFQNNIHVKRVVGCGDAKD---VICGTVEKLEADTLVMGSHGYGFIKRALL 136 (160)
Q Consensus 89 ~~~~~~~~~~~~~~g~~~~---~i~~~a~~~~~dllvig~~~~~~~~~~~~ 136 (160)
+.+ +++.......++.. .-++.++..++|+|++-+.|+......++
T Consensus 153 ~~~--vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm 201 (429)
T TIGR01425 153 KAR--IPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLF 201 (429)
T ss_pred ccC--CeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHH
Confidence 444 55543333334432 34555666789999999888776654443
No 77
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=81.56 E-value=15 Score=27.17 Aligned_cols=76 Identities=12% Similarity=0.032 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
....+.+..+.+.+++.+ .....+.... ..+..+.+.+...+.|.||.+.-+-+ ++.++..|...-.-|+-
T Consensus 16 ~~~~~~~~~~~~~l~~~g--~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGT------v~evingl~~~~~~~Lg 87 (301)
T COG1597 16 GKAKKLLREVEELLEEAG--HELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGT------VNEVANGLAGTDDPPLG 87 (301)
T ss_pred cchhhHHHHHHHHHHhcC--CeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcch------HHHHHHHHhcCCCCceE
Confidence 556677788888888888 7777666665 47778888877779999999744322 23344444444333366
Q ss_pred EecCC
Q 031383 153 IVKHP 157 (160)
Q Consensus 153 vv~~~ 157 (160)
++|-.
T Consensus 88 ilP~G 92 (301)
T COG1597 88 ILPGG 92 (301)
T ss_pred EecCC
Confidence 77654
No 78
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=81.49 E-value=9.8 Score=26.05 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=24.5
Q ss_pred eEEEEEecCChHHHHHH-HHHHHhcCCCCCCCeEEEEE
Q 031383 6 RRVVVAVDESEESMHAL-SWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al-~~a~~~a~~~~~~a~l~~l~ 42 (160)
++|++++.||..+-.++ +..-.+ ...+ ++|+++.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L-~~~g--~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL-VDEG--AEVTPIV 35 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH-HhCc--CEEEEEE
Confidence 58999999999888886 555555 4445 5766554
No 79
>PRK02929 L-arabinose isomerase; Provisional
Probab=81.49 E-value=21 Score=28.54 Aligned_cols=70 Identities=10% Similarity=0.013 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC--ChhhHHHHHhhhhC----CCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLE----ADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~----~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
..+++.+.+...+ .+.++.+ -.+ +-.+.|.+.+++.+ +|.||+-.+.-+.- +..-.+++..++|||
T Consensus 30 ~~~~i~~~l~~~~-~~~~~vv-~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a------~~~i~~~~~l~~PvL 101 (499)
T PRK02929 30 HAEEIVDGLNASG-KLPVKIV-LKPVLTTPDEITAVCREANYDDNCAGVITWMHTFSPA------KMWIRGLSALQKPLL 101 (499)
T ss_pred HHHHHHHHhcccC-CCCeEEE-EcCccCCHHHHHHHHHHccccCCCcEEEEccCCCchH------HHHHHHHHHcCCCEE
Confidence 3333444444433 2444444 222 44555555555555 99999986655532 344567899999999
Q ss_pred EecC
Q 031383 153 IVKH 156 (160)
Q Consensus 153 vv~~ 156 (160)
+...
T Consensus 102 ~~~~ 105 (499)
T PRK02929 102 HLHT 105 (499)
T ss_pred EEec
Confidence 9866
No 80
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=81.38 E-value=3.4 Score=28.69 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=31.6
Q ss_pred HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 108 VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
.+...+.+.+.|.+++|.+. +...--...+...+-++++.||++.|....
T Consensus 15 ~ia~~v~~~gtDaI~VGGS~--gvt~~~~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 15 KIAKNAKDAGTDAIMVGGSL--GIVESNLDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHHhcCCCEEEEcCcC--CCCHHHHHHHHHHHHhhcCCCEEEECCCcc
Confidence 35556677789999998652 222222333455555557899999986543
No 81
>TIGR00930 2a30 K-Cl cotransporter.
Probab=81.04 E-value=37 Score=29.57 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=58.9
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
-+|||.+........++++|-.+.+..+ -..+.||.+.+.. ...++.+...++...
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~~~~g---l~i~~~v~~~~~~---------------------~~~~~~~~~~~~~~~ 631 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFTKGKG---LMICGSVIQGPRL---------------------ECVKEAQAAEAKIQT 631 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhccCCc---EEEEEEEecCchh---------------------hhHHHHHHHHHHHHH
Confidence 3689999888888889999999986545 7788888875421 001111222233333
Q ss_pred HHHhcCCcceEEEE-EecCChhhHHHHHhhh-----hCCCEEEEeecC
Q 031383 86 VYRNFQNNIHVKRV-VGCGDAKDVICGTVEK-----LEADTLVMGSHG 127 (160)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~g~~~~~i~~~a~~-----~~~dllvig~~~ 127 (160)
.+++.+ ++.-.. +...+..+.+-...+. .+++.|+||...
T Consensus 632 ~~~~~~--~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 632 WLEKNK--VKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred HHHHhC--CCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 344444 443333 3334777777666665 458889998654
No 82
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=80.62 E-value=15 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=24.8
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
++|++++.++..+..+.++.-.+.+ .+ .++.++-
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~-~g--~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTK-LG--YDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHH-CC--CEEEEEE
Confidence 5899999999888888877666643 35 5665543
No 83
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=80.56 E-value=22 Score=28.24 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=27.7
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
.++|++.+.+|-.+-.++++.-++.+ .+ .+|.++.
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k-~G--~~V~Vvm 104 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKE-RG--AHVRCVL 104 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHh-Cc--CEEEEEE
Confidence 58999999999988889998888854 35 5766554
No 84
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=80.48 E-value=11 Score=26.80 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=39.5
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
.....|.+.+.+.+.|.+++|.+..-..+ -.-.+.+.|-.+++.||++.|...+
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~--~~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEE--NVDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHH--HHHHHHHHHHhhcCCCEEEecCChh
Confidence 56778999999999999999965422221 2244667777788999999987643
No 85
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=80.00 E-value=10 Score=22.64 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCcceEEEEE-ecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVV-GCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
....++..++++| .....+- ..|.... .|-.... ++|+||+-+.--+.-. -..+.+..++...|++.++
T Consensus 11 ~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~--~aD~VIv~t~~vsH~~----~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 11 RERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIK--KADLVIVFTDYVSHNA----MWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred cHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcC--CCCEEEEEeCCcChHH----HHHHHHHHHHcCCcEEEEC
Confidence 4556677777788 5555551 2233333 3667777 8999999755333221 1145677788889999887
Q ss_pred CC
Q 031383 156 HP 157 (160)
Q Consensus 156 ~~ 157 (160)
..
T Consensus 83 ~~ 84 (97)
T PF10087_consen 83 SR 84 (97)
T ss_pred CC
Confidence 43
No 86
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=79.71 E-value=26 Score=27.91 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=32.5
Q ss_pred ChhhHHHHHhhh----hCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEK----LEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~----~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
+..+.+.+..++ .++|.||+-.+.-+.- +..-.+++..++|||+...+.
T Consensus 49 ~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a------~~~i~~~~~l~~PvL~~~~q~ 101 (484)
T cd03557 49 TTPDEILAVCREANADDNCAGVITWMHTFSPA------KMWIAGLTALQKPLLHLHTQF 101 (484)
T ss_pred CCHHHHHHHHHHccccCCccEEEEccCCCchH------HHHHHHHHHcCCCEEEEccCC
Confidence 444444455554 4599999976655432 344567889999999986553
No 87
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=79.21 E-value=5.3 Score=26.01 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=38.8
Q ss_pred hhhHHHHHhhhhCCCEEEEeec----CCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSH----GYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~----~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
..+.|.+.+++..++.||+|-. +..+......-.+++.|-.+.+.||.++.+.-
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DERl 98 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDERL 98 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 6789999999999999999943 22222222234466778888889999887653
No 88
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.80 E-value=28 Score=27.16 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=29.2
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccch
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSV 139 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~ 139 (160)
++...+..+ +++.......+..+.|-...+..++|+|++-+-|++......+...
T Consensus 288 Lk~yae~lg--ipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL 342 (436)
T PRK11889 288 LQDYVKTIG--FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEM 342 (436)
T ss_pred HHHHhhhcC--CcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHH
Confidence 334444455 5554332222444444443334579999999888776444333433
No 89
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=77.92 E-value=25 Score=25.82 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=51.9
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+.+||.|.+.++-....|+-.++.- ...+ ++|.++-.-.+. +
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~~~~~-~~~~--~~i~~visn~~~-----------------------------------~ 129 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLWRWRS-GELP--VEIAAVISNHDD-----------------------------------L 129 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHHHHHc-CCCC--cEEEEEEEcChh-----------------------------------H
Confidence 4578888888887777777766554 2233 465555443211 1
Q ss_pred HHHHHhcCCcceEEEEEec----CChhhHHHHHhhhhCCCEEEEeecC
Q 031383 84 EAVYRNFQNNIHVKRVVGC----GDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~----g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
...+++.| +++...... ......+.+..++.++|++|+....
T Consensus 130 ~~lA~~~g--Ip~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 130 RSLVERFG--IPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred HHHHHHhC--CCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecch
Confidence 12356667 766543221 1344578888999999999997643
No 90
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=77.57 E-value=26 Score=25.94 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=40.9
Q ss_pred HHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhHHHhhcCCCCEEEec
Q 031383 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.+++.| +++...+.. +...+.+ ++|.+++|++. .+.+-...-.+...-+.++...|++++-
T Consensus 164 k~L~~~g--I~~~~I~Ds-----a~~~~~~--~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~a 228 (301)
T COG1184 164 KELRQSG--IPVTVIVDS-----AVGAFMS--RVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVA 228 (301)
T ss_pred HHHHHcC--CceEEEech-----HHHHHHH--hCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEe
Confidence 3445577 666665543 3344455 89999999875 3345544444566668888899999984
No 91
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=77.49 E-value=27 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=28.7
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
++++|+++|.-+|..++..+.+. .+ .+++++|+-...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G--~~v~av~vd~G~ 53 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IG--DRLTCVFVDHGL 53 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hC--CCEEEEEEeCCC
Confidence 68999999998888877776553 24 488999998654
No 92
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=77.42 E-value=19 Score=26.38 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=38.1
Q ss_pred ceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+..+ ...-++.+.+++.++|-+++-.........--+-..-..|...+++||++..
T Consensus 70 ~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 70 VPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred CCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5555444432 3444566889999999999875432221111112244668888899999985
No 93
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=77.22 E-value=4.3 Score=30.95 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=13.7
Q ss_pred hhhHHHHHhhhhCCCEEEEee
Q 031383 105 AKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~ 125 (160)
...++++.|.+.++|+||++.
T Consensus 28 ~f~~~l~~a~~~~vD~vliAG 48 (390)
T COG0420 28 AFDELLEIAKEEKVDFVLIAG 48 (390)
T ss_pred HHHHHHHHHHHccCCEEEEcc
Confidence 344566666777777777764
No 94
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=76.73 E-value=24 Score=25.03 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
.++++...+.+ .++...+. |....+-+..+.+-++|.+|+|+.
T Consensus 167 ~~lr~~~~~~~--~~~~IeVD-GGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 167 IQVENRLGNRR--VEKLISID-GSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHhcC--CCceEEEE-CCCCHHHHHHHHHCCCCEEEEChh
Confidence 34444444555 55555555 445555555666679999999953
No 95
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=76.58 E-value=20 Score=25.91 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecCCh--hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCE
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
+...++++.+.+... + ++++-..+...+. .-.+.+.+++.++|-+++..........--+-..-..|...++.||
T Consensus 50 ~Er~~l~~~~~~~~~--~-~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi 126 (281)
T cd00408 50 EERKEVIEAVVEAVA--G-RVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPV 126 (281)
T ss_pred HHHHHHHHHHHHHhC--C-CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 333444444444432 1 2555555544433 4466688999999999997543322222112234567888889999
Q ss_pred EEecCC
Q 031383 152 VIVKHP 157 (160)
Q Consensus 152 lvv~~~ 157 (160)
++...+
T Consensus 127 ~iYn~P 132 (281)
T cd00408 127 ILYNIP 132 (281)
T ss_pred EEEECc
Confidence 998544
No 96
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=76.37 E-value=13 Score=27.09 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCcceEE-EEEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 79 VMNRAEAVYRNFQNNIHVK-RVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.++...+.+++.+ +++. ..+-+....+.|....+++.+|+||+..|+
T Consensus 116 YL~~Cl~~Ykql~--i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 116 YLRKCLKLYKKIG--VPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHhC--CceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 4455556666777 6655 456666888999999999999999997654
No 97
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=76.12 E-value=6.4 Score=30.41 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=13.6
Q ss_pred hhHHHHHhhhhCCCEEEEee
Q 031383 106 KDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~ 125 (160)
-++|++.|.+.++|+|+++.
T Consensus 31 f~eil~~a~~~~vD~VLiaG 50 (405)
T TIGR00583 31 FEEVLQIAKEQDVDMILLGG 50 (405)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 35666777777777777764
No 98
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=76.02 E-value=7 Score=26.71 Aligned_cols=36 Identities=8% Similarity=0.042 Sum_probs=27.5
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
|++|++++.||-.+-.+++..-++.+..+ .++.++.
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g--~~V~vv~ 36 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGE--IETHLVI 36 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcC--CeEEEEE
Confidence 57999999999888888888888865445 4655543
No 99
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=75.37 E-value=22 Score=23.86 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=18.6
Q ss_pred hhHHHHHhhhhCCCEEEEeecCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~ 128 (160)
++.|.+.+++.++|+|++|....
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCccc
Confidence 46777888888999999997655
No 100
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=75.24 E-value=27 Score=26.93 Aligned_cols=35 Identities=3% Similarity=0.150 Sum_probs=27.0
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
.++|++++.||-.+..++++.-.+.+ .+ .++.++.
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~~-~g--~~V~vv~ 37 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELVR-QG--AEVKVIM 37 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHh-CC--CEEEEEE
Confidence 47999999999988888888888844 35 5665543
No 101
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=74.69 E-value=27 Score=24.64 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
++++...+.+ ..+...+. |....+-+..+.+.++|.+|+|+.
T Consensus 160 ~l~~~~~~~~--~~~~IeVD-GGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 160 AIRKKIDALG--KPIRLEID-GGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHhcC--CCeeEEEE-CCCCHHHHHHHHHcCCCEEEEChh
Confidence 3444444445 55555555 455555555666679999999954
No 102
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=74.52 E-value=5.8 Score=28.12 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=33.5
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
...+.+++.+.+.+.|.+++|.+. . ...+..+...+-+..+.||++.|....
T Consensus 19 ~~~~~~~~~~~~~gtDai~VGGS~-~---~~~~d~vv~~ik~~~~lPvilfPg~~~ 70 (230)
T PF01884_consen 19 PNPEEALEAACESGTDAIIVGGSD-T---GVTLDNVVALIKRVTDLPVILFPGSPS 70 (230)
T ss_dssp S-HHHHHHHHHCTT-SEEEEE-ST-H---CHHHHHHHHHHHHHSSS-EEEETSTCC
T ss_pred CCcHHHHHHHHhcCCCEEEECCCC-C---ccchHHHHHHHHhcCCCCEEEeCCChh
Confidence 344566677777899999999776 2 223455666666668899999987643
No 103
>PRK13337 putative lipid kinase; Reviewed
Probab=74.43 E-value=32 Score=25.30 Aligned_cols=71 Identities=7% Similarity=0.010 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc-CCCCEEEecCC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH-VKCPVVIVKHP 157 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~-~~~pVlvv~~~ 157 (160)
..++...+.+.+ ..++..... ...+..+.+.+.+.++|.||+...+ +.+ ...++.++.. ...|+-++|..
T Consensus 21 ~~~~~~~l~~~~--~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGD-GTl-----~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 21 LPDVLQKLEQAG--YETSAHATTGPGDATLAAERAVERKFDLVIAAGGD-GTL-----NEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHHcC--CEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCC-CHH-----HHHHHHHhhCCCCCcEEEECCc
Confidence 334455566677 666654333 3556666665556678887765332 322 3344444433 24688888865
Q ss_pred C
Q 031383 158 E 158 (160)
Q Consensus 158 ~ 158 (160)
.
T Consensus 93 T 93 (304)
T PRK13337 93 T 93 (304)
T ss_pred C
Confidence 3
No 104
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=74.33 E-value=8.2 Score=27.95 Aligned_cols=115 Identities=14% Similarity=-0.022 Sum_probs=67.5
Q ss_pred EEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (160)
Q Consensus 8 Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (160)
++++--.|-.+..-+..+++..+..+ +++.--..+.+......+. -..++-+..++...
T Consensus 47 ~viAGPCsvEs~E~i~~~A~~vk~~G--a~~lRGgafKPRTSPYsFQ-------------------Glge~gL~~l~~a~ 105 (286)
T COG2876 47 RVIAGPCSVESEEQVRETAESVKAAG--AKALRGGAFKPRTSPYSFQ-------------------GLGEEGLKLLKRAA 105 (286)
T ss_pred EEEecCcccCCHHHHHHHHHHHHHcc--hhhccCCcCCCCCCccccc-------------------ccCHHHHHHHHHHH
Confidence 44444445455555566666666666 5666666666654433332 22224555566666
Q ss_pred HhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 88 RNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.++| +.+.+.+..-.-.+.+.+ .+|+|=+|++.+..+.- -+=+-+.+.|||+-+..
T Consensus 106 ~~~G--l~vvtEvm~~~~~e~~~~-----y~DilqvGARNMQNF~L-------Lke~G~~~kPvLLKRg~ 161 (286)
T COG2876 106 DETG--LPVVTEVMDVRDVEAAAE-----YADILQVGARNMQNFAL-------LKEVGRQNKPVLLKRGL 161 (286)
T ss_pred HHcC--CeeEEEecCHHHHHHHHh-----hhhHHHhcccchhhhHH-------HHHhcccCCCeEEecCc
Confidence 7788 888888876555555544 37888889887665431 12334456788776654
No 105
>PRK00074 guaA GMP synthase; Reviewed
Probab=73.89 E-value=44 Score=26.76 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=28.7
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
++|+|+++|.-+|..++..+.+.. + .++.++|+-...
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~l---g--~~v~av~vd~g~ 252 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAI---G--DQLTCVFVDHGL 252 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHh---C--CceEEEEEeCCC
Confidence 789999999998888877776643 4 478999986543
No 106
>PRK00919 GMP synthase subunit B; Validated
Probab=73.88 E-value=34 Score=25.44 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=29.7
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
++++|+++|.-+|..++.++.+. .+ .+++++|+....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~---lG--~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA---IG--DRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH---hC--CeEEEEEEECCC
Confidence 78999999999999888777663 24 489999998655
No 107
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=73.74 E-value=26 Score=28.28 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecCChhh--HHH-HHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VIC-GTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~-~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
++.+.+++.+.+++ ......+..+...+ .+. +.....++|+||-. |+++..|-++.+.||+-|
T Consensus 24 ~l~~~~~~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i 89 (538)
T PRK15424 24 RLFELFRDISLEFD--HLANITPIQLGFEKAVTYIRKRLATERCDAIIAA------------GSNGAYLKSRLSVPVILI 89 (538)
T ss_pred HHHHHHHHHHHhcC--CCceEEehhhhHHHHHHHHHHHHhhCCCcEEEEC------------chHHHHHHhhCCCCEEEe
Confidence 35566667777777 44544444443333 222 33445688988753 557778888889999998
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
+-.
T Consensus 90 ~~s 92 (538)
T PRK15424 90 KPS 92 (538)
T ss_pred cCC
Confidence 754
No 108
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=73.49 E-value=22 Score=26.01 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=39.7
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+.+-..+...+..+ +..+++++.++|-+++-.........--+-..-+.|...++.||++...+
T Consensus 74 ~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 74 VKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred CCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 55555554434444 55688999999999997543222211111224466888899999999543
No 109
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=73.32 E-value=44 Score=26.40 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceE
Q 031383 17 ESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHV 96 (160)
Q Consensus 17 ~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (160)
....||..|++ . ..|..|+|+++....... . ......-..+.+..+.+.+++.| ...
T Consensus 11 ~DN~aL~~A~~-----~--~~vlpvyi~dp~~~~~~~-------~-------~~~~~~fl~~sL~~L~~~L~~~G--~~L 67 (475)
T TIGR02766 11 EDNPALAAAAR-----A--GPVIPVFVWAPEEEGQYY-------P-------GRVSRWWLKQSLAHLDQSLRSLG--TCL 67 (475)
T ss_pred chHHHHHHHHh-----C--CCEEEEEEechHHhcccc-------c-------cHHHHHHHHHHHHHHHHHHHHcC--Cce
Confidence 34567766653 2 268899999765321000 0 01122245556667777777777 333
Q ss_pred EEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 97 KRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 97 ~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
.... .|++.+.|.+.+++.+++-|+....
T Consensus 68 ~v~~-~g~~~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 68 VTIR-STDTVAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred EEEe-CCCHHHHHHHHHHHcCCCEEEEecc
Confidence 3221 4799999999999999999988754
No 110
>PRK13054 lipid kinase; Reviewed
Probab=73.14 E-value=34 Score=25.08 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=38.0
Q ss_pred HHHHHhcCCcceEEEEEe-cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCCC
Q 031383 84 EAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHPE 158 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~~ 158 (160)
...+.+.+ ..++.... ....+.++.+.+...++|.||+...+ +.+ ..++..++.. ..+|+-++|-..
T Consensus 24 ~~~l~~~g--~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGD-GTl-----~evv~~l~~~~~~~~~~lgiiP~GT 94 (300)
T PRK13054 24 VGLLREEG--HTLHVRVTWEKGDAARYVEEALALGVATVIAGGGD-GTI-----NEVATALAQLEGDARPALGILPLGT 94 (300)
T ss_pred HHHHHHcC--CEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCc-cHH-----HHHHHHHHhhccCCCCcEEEEeCCc
Confidence 33456666 66554433 33445666666555678887765333 323 3344556543 347899998654
No 111
>PRK14057 epimerase; Provisional
Probab=73.07 E-value=32 Score=24.82 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
.++++...+.+ ..+...+. |.....-+..+.+.++|.+|+|+.
T Consensus 181 ~~lr~~~~~~~--~~~~IeVD-GGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 181 AQLLCLLGDKR--EGKIIVID-GSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHHhcC--CCceEEEE-CCCCHHHHHHHHHCCCCEEEEChH
Confidence 34444444555 55555555 455555555666679999999943
No 112
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=73.02 E-value=34 Score=25.05 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=53.3
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.++||.|-+.++.....++-.+++- ...+ ++|.++-.-.+. +
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~-g~l~--~~i~~visn~~~-----------------------------------~ 124 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYS-GELD--AEIALVISNHED-----------------------------------L 124 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHc-CCCC--cEEEEEEEcChh-----------------------------------H
Confidence 4678999999998888888887655 3333 455554333221 1
Q ss_pred HHHHHhcCCcceEEEEEec--C--ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 84 EAVYRNFQNNIHVKRVVGC--G--DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~--g--~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
...+++.| +++...... . .....+++..++.++|++|+....
T Consensus 125 ~~~A~~~g--Ip~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym 170 (280)
T TIGR00655 125 RSLVERFG--IPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYM 170 (280)
T ss_pred HHHHHHhC--CCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCch
Confidence 11255667 766544321 1 234578888899999999997543
No 113
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.88 E-value=6.5 Score=28.16 Aligned_cols=13 Identities=8% Similarity=-0.000 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhcC
Q 031383 79 VMNRAEAVYRNFQ 91 (160)
Q Consensus 79 ~~~~~~~~~~~~~ 91 (160)
.++++.+.+.+.+
T Consensus 27 ~l~~l~~~~~~~~ 39 (253)
T TIGR00619 27 FLDDLLEFAKAEQ 39 (253)
T ss_pred HHHHHHHHHHHcC
Confidence 4444444444444
No 114
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=72.47 E-value=6.5 Score=29.18 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=34.9
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC-CcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG-YGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~-~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.+..+.++..+ .+|+||+|... .+.+--.+.=.-...-+++++||++.|.+-
T Consensus 163 ~~~~~~l~AI~--~ADlIvlgPGSlyTSI~P~Llv~gi~eAi~~s~a~kV~V~ni 215 (309)
T cd07044 163 SPSREVLEAIE--KADNIVIGPGSLYTSILPNISVPGIREALKKTXAKKVYVSNI 215 (309)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcCHHHhhhhcCcHhHHHHHHhcCCCeEEECCC
Confidence 45667888888 89999999543 333333333344456677789999988653
No 115
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=72.28 E-value=47 Score=26.29 Aligned_cols=92 Identities=10% Similarity=0.030 Sum_probs=57.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
|..-+...||..|+..+. ..|..|+|+++....... .......-.-+.+..+...+++.|
T Consensus 11 DLRl~DN~aL~~A~~~~~-----~~vlpvyv~dp~~~~~~~--------------~~~~r~~Fl~esL~~L~~~L~~~g- 70 (472)
T PRK10674 11 DLRLHDNLALAAACRDPS-----ARVLALFIATPAQWAAHD--------------MAPRQAAFINAQLNALQIALAEKG- 70 (472)
T ss_pred CCCcchHHHHHHHHhCCC-----CCEEEEEEECchhhccCC--------------CCHHHHHHHHHHHHHHHHHHHHcC-
Confidence 444456678888875531 269999999875321100 011223445556666677777777
Q ss_pred cceEEEEEe--cCChhhHHHHHhhhhCCCEEEEee
Q 031383 93 NIHVKRVVG--CGDAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 93 ~~~~~~~~~--~g~~~~~i~~~a~~~~~dllvig~ 125 (160)
+.+-.... .|++.+.|.+.+++.+++-|+...
T Consensus 71 -~~L~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~ 104 (472)
T PRK10674 71 -IPLLFHEVDDFAASVEWLKQFCQQHQVTHLFYNY 104 (472)
T ss_pred -CceEEEecCCcCCHHHHHHHHHHHcCCCEEEEec
Confidence 44433322 367899999999999999998864
No 116
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=71.93 E-value=20 Score=26.31 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCcceEE-EEEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 79 VMNRAEAVYRNFQNNIHVK-RVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.++...+.+++.+ ++.. ..+-+....+.|.+..+++++|+||+..|+
T Consensus 117 YL~~Cl~~Ykql~--i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 117 YLNKCLKVYKQLG--IPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHHHHHHHHHHcC--CceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 4555566677777 7665 445556888999999999999999997654
No 117
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=71.86 E-value=21 Score=22.04 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCcceEEEEEe-cCChhhHHHHHhhhhCCCEEEEeecCCc
Q 031383 82 RAEAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
-+...++..| ++.... ...+.+.+.+.+.+.++|+|.+......
T Consensus 18 ~~~~~l~~~G----~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~ 62 (119)
T cd02067 18 IVARALRDAG----FEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTT 62 (119)
T ss_pred HHHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 4455666777 333333 2367889999999999999999866333
No 118
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=71.51 E-value=34 Score=25.05 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=38.5
Q ss_pred ceEEEEEecCC--hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 94 IHVKRVVGCGD--AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 94 ~~~~~~~~~g~--~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
+++-..+...+ ..-++.+++++.++|.+++..........--.-..-..+...+ +.||++...+
T Consensus 71 ~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 71 IALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 55555554444 4446668899999999999754322211111112335677766 6999998654
No 119
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=71.46 E-value=35 Score=25.25 Aligned_cols=65 Identities=14% Similarity=0.028 Sum_probs=39.7
Q ss_pred cceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 93 NIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 93 ~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
++.+-..+... ..+-...+.+++.++|-+++-..-......--.-..-+.|...+ +.||++...+
T Consensus 77 rvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P 144 (309)
T cd00952 77 RVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANP 144 (309)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 36565555543 34456668899999998887644322211111122346688888 5999999544
No 120
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=71.35 E-value=43 Score=25.44 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=26.1
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
++|+|++++.-+|..++..+.+. + -++..+|+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~----G--~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ----G--YEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHc----C--CeEEEEEEE
Confidence 47999999998888888777663 4 488888884
No 121
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.99 E-value=37 Score=24.65 Aligned_cols=106 Identities=13% Similarity=0.054 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcce
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
++...++++|..+.. .+ .++...+.+++......+.+ ..++-+..+++.+++.| +.
T Consensus 38 e~~~~~~~~A~~lk~-~g--~~~~r~~~~kpRTs~~s~~G-------------------~g~~gl~~l~~~~~~~G--l~ 93 (266)
T PRK13398 38 ESEEQMVKVAEKLKE-LG--VHMLRGGAFKPRTSPYSFQG-------------------LGEEGLKILKEVGDKYN--LP 93 (266)
T ss_pred CCHHHHHHHHHHHHH-cC--CCEEEEeeecCCCCCCccCC-------------------cHHHHHHHHHHHHHHcC--CC
Confidence 455668888888866 45 57777888875543222211 11344555666678888 88
Q ss_pred EEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 96 ~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+-+.+..-...+.+.+ . +|++-+|++...... ..+.+ .++..||++=...
T Consensus 94 ~~te~~d~~~~~~l~~----~-vd~~kIga~~~~n~~------LL~~~-a~~gkPV~lk~G~ 143 (266)
T PRK13398 94 VVTEVMDTRDVEEVAD----Y-ADMLQIGSRNMQNFE------LLKEV-GKTKKPILLKRGM 143 (266)
T ss_pred EEEeeCChhhHHHHHH----h-CCEEEECcccccCHH------HHHHH-hcCCCcEEEeCCC
Confidence 8877776555555543 3 689999977654421 22333 4567888775543
No 122
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=70.98 E-value=35 Score=24.24 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
.++++...+.+ ..+...+..| ...+-+..+.+-++|.+|+|+.
T Consensus 157 ~~lr~~~~~~~--~~~~IeVDGG-I~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 157 AELKALRERNG--LEYLIEVDGS-CNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHHhcC--CCeEEEEECC-CCHHHHHHHHHcCCCEEEEChH
Confidence 34444444555 6666666655 4444454555569999999964
No 123
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=70.89 E-value=12 Score=23.14 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=28.5
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKH 156 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~ 156 (160)
+....+.+++.++..||+-+.. |.++..+.+.-| |||+++-+
T Consensus 5 a~aa~~~A~~~~ak~Ivv~T~s---------G~ta~~isk~RP~~pIiavt~ 47 (117)
T PF02887_consen 5 ARAAVELAEDLNAKAIVVFTES---------GRTARLISKYRPKVPIIAVTP 47 (117)
T ss_dssp HHHHHHHHHHHTESEEEEE-SS---------SHHHHHHHHT-TSSEEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCeEEEEcC
Confidence 4556677888888888876543 556777777766 88888744
No 124
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=70.79 E-value=40 Score=24.86 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=53.1
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
..+||.|-+.++.....++-.+.+-- ..+ +++.+ |+..... +
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~~-~l~--~~i~~--visn~~~---------------------------------~ 133 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRMG-ELD--MDIVG--IISNHPD---------------------------------L 133 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHCC-CCC--cEEEE--EEECChh---------------------------------H
Confidence 45689999999988888888886652 223 45444 4432210 1
Q ss_pred HHHHHhcCCcceEEEEEec-C---ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 84 EAVYRNFQNNIHVKRVVGC-G---DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-g---~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.+.+++.| +++...... . .....+++..++.++|++|+....
T Consensus 134 ~~~A~~~g--Ip~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 134 QPLAVQHD--IPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYM 179 (289)
T ss_pred HHHHHHcC--CCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhh
Confidence 24456677 766543211 1 234578899999999999997543
No 125
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=70.75 E-value=43 Score=25.30 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=24.8
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
+|+|++++.-+|..++..+.+. + -++..+|+..
T Consensus 1 kVlValSGGvDSsvla~lL~~~----g--~~v~~v~i~~ 33 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ----G--YEVIGVFMKN 33 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----C--CcEEEEEEec
Confidence 5899999998888777666553 4 4788888754
No 126
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=70.68 E-value=32 Score=25.24 Aligned_cols=62 Identities=16% Similarity=0.027 Sum_probs=37.7
Q ss_pred ceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.+-..+... ..+-++.+++++.++|-+++-..-......--+-..-..|...+++||++..
T Consensus 75 ~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 75 VPVYTGVGGNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred CcEEEecCccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 5555555432 3333567889999999998864332221111112244668888899999986
No 127
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=70.67 E-value=33 Score=23.88 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEec-----------C-ChhhHHHHHhhh-hCCCEEEEeecCCcc-cceeeccchhH
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGC-----------G-DAKDVICGTVEK-LEADTLVMGSHGYGF-IKRALLGSVSD 141 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g-~~~~~i~~~a~~-~~~dllvig~~~~~~-~~~~~~gs~~~ 141 (160)
....++.+.+.+.+.. ++.++..... | =....|++..+. ...|.|++...-... -..++-+-+.+
T Consensus 108 a~~~l~~~~~~l~~~~-~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~~ 186 (204)
T PF04459_consen 108 AYPFLKPLVEKLNRIP-GLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLDDMTLE 186 (204)
T ss_pred HHHHHHHHHHHHhccC-CCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCccCCCCcHH
Confidence 3445555555553222 3555544333 3 234455555443 344899998654333 23344577889
Q ss_pred HHhhcCCCCEEEecCCC
Q 031383 142 YCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 142 ~ll~~~~~pVlvv~~~~ 158 (160)
.|.++..+||.+++...
T Consensus 187 el~~~lg~~v~vv~~~~ 203 (204)
T PF04459_consen 187 ELEERLGVPVIVVRGPG 203 (204)
T ss_pred HHHHHhCCcEEEeCCCC
Confidence 99999999999998765
No 128
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=70.64 E-value=34 Score=24.08 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
....+.+++.+++.| +.+.-..+.....+.|.++.. +.|+|.+|..
T Consensus 48 ~~Yv~k~~~~l~~lg--~~v~~L~l~~~~~~~Ie~~l~--~~d~IyVgGG 93 (224)
T COG3340 48 DFYVEKVRNALAKLG--LEVSELHLSKPPLAAIENKLM--KADIIYVGGG 93 (224)
T ss_pred HHHHHHHHHHHHHcC--CeeeeeeccCCCHHHHHHhhh--hccEEEECCc
Confidence 456677778888888 888777777788899999888 8999999853
No 129
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=70.63 E-value=32 Score=23.73 Aligned_cols=33 Identities=9% Similarity=-0.095 Sum_probs=23.1
Q ss_pred EEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 10 VAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 10 v~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
++.-.++.+..++..+..++...+ .++.++.+-
T Consensus 29 ~~~vi~e~~~~~l~ea~~la~~~g--~~v~av~~G 61 (202)
T cd01714 29 VPLIINPYDEYAVEEALRLKEKYG--GEVTVVSMG 61 (202)
T ss_pred CCccCChHhHHHHHHHHHhhhhcC--CEEEEEEEC
Confidence 344556778888999999887766 576665544
No 130
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=70.35 E-value=28 Score=25.25 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=39.0
Q ss_pred ceEEEEEecCC--hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 94 IHVKRVVGCGD--AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 94 ~~~~~~~~~g~--~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+.+-..+...+ ..-++.+.+++.++|-+++..........--.-..-+.|...+++||++...+
T Consensus 70 ~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 70 VPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred CcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 44444444333 44466688999999988887543222211111234567888889999998543
No 131
>PRK13059 putative lipid kinase; Reviewed
Probab=70.25 E-value=40 Score=24.68 Aligned_cols=70 Identities=10% Similarity=0.010 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc-CCCCEEEecCC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH-VKCPVVIVKHP 157 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~-~~~pVlvv~~~ 157 (160)
.+++...+.+.+ .++...... +... +....+.+.++|.||+.. |-+.+ ..+++.++.. ..+|+-++|-.
T Consensus 21 ~~~i~~~l~~~g--~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~G-GDGTv-----~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 21 LDKVIRIHQEKG--YLVVPYRISLEYDL-KNAFKDIDESYKYILIAG-GDGTV-----DNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHHHHHHHHHCC--cEEEEEEccCcchH-HHHHHHhhcCCCEEEEEC-CccHH-----HHHHHHHHhcCCCCcEEEECCC
Confidence 344556666677 554433222 2223 333334345778776643 33322 3345666643 45899999864
Q ss_pred C
Q 031383 158 E 158 (160)
Q Consensus 158 ~ 158 (160)
.
T Consensus 92 T 92 (295)
T PRK13059 92 T 92 (295)
T ss_pred C
Confidence 3
No 132
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=70.20 E-value=38 Score=24.89 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=40.0
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecC
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKH 156 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~ 156 (160)
+++-..+...+..+ ++.+.+++.++|.+++...-......--+-..-..|...+ +.||++...
T Consensus 70 ~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 70 IPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred CcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeC
Confidence 55555555444444 5668899999999999864322222111223446688888 799999854
No 133
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=70.20 E-value=25 Score=23.57 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCcceEEEE-Ee--cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 79 VMNRAEAVYRNFQNNIHVKRV-VG--CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~--~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
.++.+...+++..+++.+.-. .- .....+.|++.+++.++|+|++|-.... -+. ......++.+.+|++
T Consensus 60 ~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~Pk-QE~-----~~~~~~~~l~~~v~i 131 (172)
T PF03808_consen 60 VLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPK-QER-----WIARHRQRLPAGVII 131 (172)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCH-HHH-----HHHHHHHHCCCCEEE
Confidence 334444445444434554422 11 2357889999999999999999943211 111 235566666666554
No 134
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=70.06 E-value=37 Score=24.78 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=38.9
Q ss_pred ceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 94 IHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 94 ~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
+.+-..+...+.. -++.+++++.++|-+++..........--.-..-+.|...+ ++||++...+
T Consensus 71 ~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 71 VTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred CeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 4444444444444 45568899999999998654322221111122446688888 7999998544
No 135
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=69.80 E-value=32 Score=25.35 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=38.3
Q ss_pred ceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 94 ~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+++-..+..+ ..+-.+.+.+++.++|-+++...-......--+-..-..|...++.||++...
T Consensus 77 ~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~ 140 (303)
T PRK03620 77 VPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNR 140 (303)
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 5555455332 23335568889999999988654322211111223456788889999999863
No 136
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=69.24 E-value=9.4 Score=27.16 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=12.9
Q ss_pred HHHhhcCCCCEEEecCCCC
Q 031383 141 DYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 141 ~~ll~~~~~pVlvv~~~~~ 159 (160)
-+.|...+||+++||...+
T Consensus 82 f~~L~~~~~p~~~vPG~~D 100 (255)
T PF14582_consen 82 FRILGELGVPVFVVPGNMD 100 (255)
T ss_dssp HHHHHCC-SEEEEE--TTS
T ss_pred HHHHHhcCCcEEEecCCCC
Confidence 3578899999999997654
No 137
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=68.98 E-value=32 Score=26.09 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCc
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR-NFQNN 93 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 93 (160)
.+.+.+.+++|+++|+..+. -+|+++|=...... ..-+++.+.+..+ +++ .
T Consensus 159 ~~~~eRi~r~AF~~A~~r~~-k~Vt~v~KaNvl~~--------------------------~~lf~~~~~eva~~~yp-~ 210 (348)
T PF00180_consen 159 REGIERIARFAFEYARKRGR-KKVTVVHKANVLKS--------------------------TDLFREVFQEVAKQEYP-D 210 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-SEEEEEESTTTSTT--------------------------HHHHHHHHHHHHHHTHT-T
T ss_pred cchhhHHHHHHHHHHHHhCC-ceEEEEeccchhHH--------------------------HHHHHHHHHHHHHhhcc-e
Confidence 35688999999999999843 68888885432221 1134444445555 455 5
Q ss_pred ceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
+.++..... ...-.++..=. ..|+||+.
T Consensus 211 I~~~~~~vD-~~~~~Lv~~P~--~fdViv~~ 238 (348)
T PF00180_consen 211 IEVEHMLVD-AAAMQLVKNPE--QFDVIVTP 238 (348)
T ss_dssp SEEEEEEHH-HHHHHHHHSGG--GESEEEEE
T ss_pred eEeeeeech-hhhheeecCCc--ceeEEeec
Confidence 777776663 34444444444 78877775
No 138
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=68.97 E-value=32 Score=26.91 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEE--EEe-cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCC
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKR--VVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCP 150 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~p 150 (160)
+..++..+++.+.++..+ +++.. .+. .-+....+.+.++..++|.||+-...-+. ++..-.+++..++|
T Consensus 19 ~~~~~~~~~~~~~l~~~~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~------~~~~~~~~~~~~~P 90 (452)
T cd00578 19 EQVEEYAREVADLLNELP--VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGP------AKMWIAGLSELRKP 90 (452)
T ss_pred HHHHHHHHHHHHHHhcCC--ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEccccccc------HHHHHHHHHhcCCC
Confidence 333444444444454445 33322 222 11445566677777799999986443221 22334556778999
Q ss_pred EEEecCCC
Q 031383 151 VVIVKHPE 158 (160)
Q Consensus 151 Vlvv~~~~ 158 (160)
|++.....
T Consensus 91 vll~a~~~ 98 (452)
T cd00578 91 VLLLATQF 98 (452)
T ss_pred EEEEeCCC
Confidence 99986543
No 139
>PRK13057 putative lipid kinase; Reviewed
Probab=68.72 E-value=35 Score=24.79 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
..++...+++.+ +.+...... ...+..+.+.+ ..++|+||+..- -+. +..+++.+. .+..|+-++|-..
T Consensus 15 ~~~i~~~l~~~g--~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~GG-DGT-----v~~v~~~l~-~~~~~lgiiP~GT 84 (287)
T PRK13057 15 LAAARAALEAAG--LELVEPPAEDPDDLSEVIEAY-ADGVDLVIVGGG-DGT-----LNAAAPALV-ETGLPLGILPLGT 84 (287)
T ss_pred HHHHHHHHHHcC--CeEEEEecCCHHHHHHHHHHH-HcCCCEEEEECc-hHH-----HHHHHHHHh-cCCCcEEEECCCC
Confidence 445566667777 666655444 34455555543 346788777533 232 233445554 3578999998643
No 140
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=68.57 E-value=41 Score=24.15 Aligned_cols=94 Identities=11% Similarity=0.008 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-eE
Q 031383 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI-HV 96 (160)
Q Consensus 18 s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 96 (160)
+..+.++.++++...+ ++|.++-.-... .+...+.+...+++.| . .+
T Consensus 13 ~~~i~~~~~~lag~~~--~rI~~iptAS~~----------------------------~~~~~~~~~~~~~~lG--~~~v 60 (250)
T TIGR02069 13 DREILREFVSRAGGED--AIIVIITSASEE----------------------------PREVGERYITIFSRLG--VKEV 60 (250)
T ss_pred hHHHHHHHHHHhCCCC--ceEEEEeCCCCC----------------------------hHHHHHHHHHHHHHcC--Ccee
Confidence 4558899999998766 566654322111 0112233444555566 4 24
Q ss_pred EEEEecC---ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh
Q 031383 97 KRVVGCG---DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK 145 (160)
Q Consensus 97 ~~~~~~g---~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~ 145 (160)
....... .....+.+... ++|.|+++.-....+-+.+-++-..++++
T Consensus 61 ~~l~i~~r~~a~~~~~~~~l~--~ad~I~~~GGnq~~l~~~l~~t~l~~~l~ 110 (250)
T TIGR02069 61 KILDVREREDASDENAIALLS--NATGIFFTGGDQLRITSLLGDTPLLDRLR 110 (250)
T ss_pred EEEecCChHHccCHHHHHHHh--hCCEEEEeCCCHHHHHHHHcCCcHHHHHH
Confidence 4443321 12234556666 89999998665444444445555444443
No 141
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=68.15 E-value=65 Score=27.38 Aligned_cols=147 Identities=11% Similarity=0.080 Sum_probs=77.3
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
-+||.++...++...++......-.....|..+.++|..+......+....+...... .........+.....++.+..
T Consensus 444 Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~-~~~~~s~~~~~i~~aF~~f~~ 522 (769)
T KOG1650|consen 444 LRILTCLHGPENISGIINLLELSSGSLESPLSVYALHLVELVGRATPLLISHKLRKNG-RVESRSSSSDQINVAFEAFEK 522 (769)
T ss_pred eEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeeeeeeecccccchhhhhhhhcccc-ccccccccchhhHHHHHHHHH
Confidence 5788998888776666655554443432247888999887643322111000000000 000000000011112222222
Q ss_pred HHHhcCCcceEEEEEec---CChhhHHHHHhhhhCCCEEEEeecCCcc----cce--eeccchhHHHhhcCCCCEEEecC
Q 031383 86 VYRNFQNNIHVKRVVGC---GDAKDVICGTVEKLEADTLVMGSHGYGF----IKR--ALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~---g~~~~~i~~~a~~~~~dllvig~~~~~~----~~~--~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.- ..+ +.+...... ....+.|+..+.+.+.+++++.-+.+.. ++. ..+.++.+.+++++||.|-+.=+
T Consensus 523 ~~-~~~--v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvd 599 (769)
T KOG1650|consen 523 LS-QEG--VMVRTFTALSPEKLMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVD 599 (769)
T ss_pred hc-CCc--EEEEeehhhCChhhchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEe
Confidence 11 122 555544333 3677889999999999999998654432 111 12345778899999999977633
No 142
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=68.12 E-value=40 Score=24.61 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCC--hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGD--AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
+..++++.+.+... + ++.+-..+...+ ..-+..+.+++.++|-+++..........--+-..-..|...++.||+
T Consensus 55 Er~~~~~~~~~~~~--~-~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~ 131 (292)
T PRK03170 55 EHEELIRAVVEAVN--G-RVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPII 131 (292)
T ss_pred HHHHHHHHHHHHhC--C-CCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 33344444444432 1 355555555443 444566889999999998864432221111112345678888899999
Q ss_pred EecCC
Q 031383 153 IVKHP 157 (160)
Q Consensus 153 vv~~~ 157 (160)
+...+
T Consensus 132 lYn~P 136 (292)
T PRK03170 132 LYNVP 136 (292)
T ss_pred EEECc
Confidence 98543
No 143
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=68.04 E-value=51 Score=26.56 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHH---HHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVIC---GTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~---~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.+.+.+.+.+++ -.++..+..|+..+.+- +.....++|+||-. |.++..|-++.+.||+-++
T Consensus 15 l~~~~~~i~~~~~--~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~ 80 (526)
T TIGR02329 15 LFDLFRDIAPEFD--HRANITPIQLGFEDAVREIRQRLGAERCDVVVAG------------GSNGAYLKSRLSLPVIVIK 80 (526)
T ss_pred HHHHHHHHHHhCC--CCceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC------------chHHHHHHHhCCCCEEEec
Confidence 3444445555555 22444455565544444 33445688888753 4566777778899999887
Q ss_pred CC
Q 031383 156 HP 157 (160)
Q Consensus 156 ~~ 157 (160)
..
T Consensus 81 ~s 82 (526)
T TIGR02329 81 PT 82 (526)
T ss_pred CC
Confidence 54
No 144
>PRK13055 putative lipid kinase; Reviewed
Probab=68.04 E-value=48 Score=24.79 Aligned_cols=74 Identities=8% Similarity=0.028 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEec--CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc-CCCCEEE
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGC--GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH-VKCPVVI 153 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~-~~~pVlv 153 (160)
.+.+.++...+.+.+ +.++..... +..+..+.+.+.+.++|.||+..-+ +.+ ...++.+... ...|+-+
T Consensus 19 ~~~~~~i~~~l~~~g--~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGD-GTl-----~evvngl~~~~~~~~Lgi 90 (334)
T PRK13055 19 KKNVADILDILEQAG--YETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGD-GTI-----NEVVNGIAPLEKRPKMAI 90 (334)
T ss_pred HHHHHHHHHHHHHcC--CeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCC-CHH-----HHHHHHHhhcCCCCcEEE
Confidence 344556667777777 666654333 2456667766666678888775332 322 2344555543 2467888
Q ss_pred ecCCC
Q 031383 154 VKHPE 158 (160)
Q Consensus 154 v~~~~ 158 (160)
+|-..
T Consensus 91 iP~GT 95 (334)
T PRK13055 91 IPAGT 95 (334)
T ss_pred ECCCc
Confidence 88543
No 145
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=68.03 E-value=59 Score=25.77 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=59.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
|..-+...||.+|+..... -+.+|++.++.... .. -+....-..+.+..+...+.+.|
T Consensus 11 DLR~~DN~aL~~A~~~~~~-----~~~~vfi~~~~~~~-~~---------------~~~~~~Fl~~sL~~L~~~L~~~g- 68 (461)
T COG0415 11 DLRLTDNAALAAACQSGQP-----VIIAVFILDPEQLG-HA---------------SPRHAAFLLQSLQALQQSLAELG- 68 (461)
T ss_pred ccccCChHHHHHHHhcCCC-----ceEEEEEechhhcc-cc---------------CHHHHHHHHHHHHHHHHHHHHcC-
Confidence 4444566788888877442 34677777665431 00 12223444455566666666677
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+...+..|++.+.+.+++++.+++.|+-...
T Consensus 69 ---i~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~ 99 (461)
T COG0415 69 ---IPLLVREGDPEQVLPELAKQLAATTVFWNRD 99 (461)
T ss_pred ---CceEEEeCCHHHHHHHHHHHhCcceEEeeee
Confidence 7778888999999999999999888887643
No 146
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=68.02 E-value=37 Score=23.42 Aligned_cols=66 Identities=5% Similarity=-0.010 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEe----ecCCcccceeeccchhHHHhhcCC-CCEEEec
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMG----SHGYGFIKRALLGSVSDYCAKHVK-CPVVIVK 155 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig----~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~ 155 (160)
+.++..+...+ ..+.. +...+-.++.+..+....+|++++. -...++. ...+.|.+..| ++|+++-
T Consensus 14 ~gl~~~L~~~~--~~~~v-v~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~------~~i~~i~~~~p~~~iivlt 84 (207)
T PRK15411 14 LGLTGYLLSRG--VKKRE-INDIETVDDLAIACDSLRPSVVFINEDCFIHDASNS------QRIKQIINQHPNTLFIVFM 84 (207)
T ss_pred HHHHHHHHhCC--CcceE-EEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChH------HHHHHHHHHCCCCeEEEEE
Confidence 34444454433 23333 2333444445566777789999999 3333322 26677777666 8888884
No 147
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=68.02 E-value=24 Score=21.17 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=26.0
Q ss_pred EEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 8 Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
|+|+++|..+|..++..+.+. + .++.++|+-...
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~----~--~~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL----G--YQVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh----C--CCEEEEEEcCCC
Confidence 589999999998888887775 3 267888886544
No 148
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=67.83 E-value=65 Score=28.59 Aligned_cols=90 Identities=11% Similarity=0.205 Sum_probs=59.8
Q ss_pred CCceEEEEE-ecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVA-VDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (160)
Q Consensus 3 ~~~~~Ilv~-~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
.+|.|+++. |.+.. ..-|++.|+.-+..-+ .|.+| .|.. -.+++..+
T Consensus 614 kpMDRLiCGDVGFGK-TEVAmRAAFkAV~~GK---QVAvL--VPTT--------------------------lLA~QHy~ 661 (1139)
T COG1197 614 KPMDRLICGDVGFGK-TEVAMRAAFKAVMDGK---QVAVL--VPTT--------------------------LLAQQHYE 661 (1139)
T ss_pred CcchheeecCcCCcH-HHHHHHHHHHHhcCCC---eEEEE--cccH--------------------------HhHHHHHH
Confidence 367887777 55554 5567777777665543 33332 2222 44566677
Q ss_pred HHHHHHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.+++.++.++ ++++...+.- .....+++..++..+|+| +|+|.
T Consensus 662 tFkeRF~~fP--V~I~~LSRF~s~kE~~~il~~la~G~vDIv-IGTHr 706 (1139)
T COG1197 662 TFKERFAGFP--VRIEVLSRFRSAKEQKEILKGLAEGKVDIV-IGTHR 706 (1139)
T ss_pred HHHHHhcCCC--eeEEEecccCCHHHHHHHHHHHhcCCccEE-EechH
Confidence 7777788888 7777665554 677799999999999975 56664
No 149
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=67.65 E-value=14 Score=27.53 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=34.9
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC-CcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG-YGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~-~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.+..+.++..+ ++|+||+|... .+.+--.+.=.-...-+++++||++.|.+-
T Consensus 161 ~a~~~al~AI~--~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~ 213 (310)
T TIGR01826 161 PALREAVEAIR--EADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNL 213 (310)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCC
Confidence 56678888888 89999999543 333333333334455667889999988654
No 150
>PLN02828 formyltetrahydrofolate deformylase
Probab=67.57 E-value=45 Score=24.29 Aligned_cols=87 Identities=10% Similarity=0.050 Sum_probs=54.0
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
..+||+|-+.++.+...++-++.+- ...+ ++|.++-...+.... ..+
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~-g~l~--~eI~~ViSn~~~~~~------------------------------a~~ 115 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQD-GRLP--VDITCVISNHERGPN------------------------------THV 115 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhc-CCCC--ceEEEEEeCCCCCCC------------------------------chH
Confidence 4578999999999999888888665 3334 566655444322110 033
Q ss_pred HHHHHhcCCcceEEEEEec--CChhhHHHHHhhhhCCCEEEEeecC
Q 031383 84 EAVYRNFQNNIHVKRVVGC--GDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
...+++.| +++...... ....+.+++..+ ++|++|+....
T Consensus 116 ~~~A~~~g--IP~~~~~~~~~~~~e~~~~~~l~--~~DliVLAgym 157 (268)
T PLN02828 116 MRFLERHG--IPYHYLPTTKENKREDEILELVK--GTDFLVLARYM 157 (268)
T ss_pred HHHHHHcC--CCEEEeCCCCCCCHHHHHHHHHh--cCCEEEEeeeh
Confidence 34456677 777644332 223346667666 69999997543
No 151
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=67.24 E-value=43 Score=24.37 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=38.2
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+.+-..+...+..+ .+.+++++.++|-+++..........--+-..-..|.+.++.||++...+
T Consensus 68 ~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 68 VPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred CeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 44444444333333 56688999999999887543222111111224466788889999998543
No 152
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=67.01 E-value=37 Score=23.01 Aligned_cols=44 Identities=7% Similarity=0.175 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCcceEEEEEecC--C--hhhHHHHHhhhhCCCEEEEee
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCG--D--AKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g--~--~~~~i~~~a~~~~~dllvig~ 125 (160)
++.+.+.+++..+++.+... .| + ..++|++.+.+.++|+|++|-
T Consensus 61 ~~~~~~~l~~~yP~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 61 LQQLKVKLIKEYPKLKIVGA--FGPLEPEERKAALAKIARSGAGIVFVGL 108 (177)
T ss_pred HHHHHHHHHHHCCCCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEEEc
Confidence 33444444433334665543 44 2 346789999999999999983
No 153
>PRK00861 putative lipid kinase; Reviewed
Probab=67.00 E-value=47 Score=24.31 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=33.6
Q ss_pred ceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 94 ~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
..++...... ..+.++.+.+.+.++|+||+.. |-+.+ ..++..+. ...+|+-++|-..
T Consensus 33 ~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~G-GDGTl-----~evv~~l~-~~~~~lgviP~GT 91 (300)
T PRK00861 33 MDLDIYLTTPEIGADQLAQEAIERGAELIIASG-GDGTL-----SAVAGALI-GTDIPLGIIPRGT 91 (300)
T ss_pred CceEEEEccCCCCHHHHHHHHHhcCCCEEEEEC-ChHHH-----HHHHHHHh-cCCCcEEEEcCCc
Confidence 3455443333 5567777777667889877653 22323 23445554 3468888888654
No 154
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=66.22 E-value=23 Score=25.77 Aligned_cols=90 Identities=8% Similarity=0.085 Sum_probs=49.1
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
+|-+.+.....+..-++-|-++.+.++ ...+.|+.-|..+. ...+....++..+
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg---~~~I~h~tyPdnf~-----------------------~e~EttIskI~~l 57 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYG---DVMIKHVTYPDNFM-----------------------SEQETTISKIVSL 57 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHH---HHEEEEEE--TTGG-----------------------GCHHHHHHHHHGG
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhC---cceEEEEeCCCccc-----------------------chHHHHHHHHHHh
Confidence 455566555566667777777777888 33788877665442 2233344444444
Q ss_pred HHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeec
Q 031383 87 YRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+.+- .++..+... .-...-++-+++...|++.+...
T Consensus 58 AdDp----~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~ 95 (275)
T PF12683_consen 58 ADDP----DMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGE 95 (275)
T ss_dssp GG-T----TEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS
T ss_pred ccCC----CccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCC
Confidence 3333 355544443 44456677888999999999854
No 155
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=65.87 E-value=11 Score=28.40 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=35.5
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
.+.+|.|..+|..+|.-.+..++++++..+. .+|.++|+-
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~-~~i~VlfiD 65 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGR-DKISVLFID 65 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCC-CceEEEEEc
Confidence 4678999999999999999999999999886 688888875
No 156
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=65.67 E-value=50 Score=24.10 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=37.1
Q ss_pred HHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCCC
Q 031383 85 AVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHPE 158 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~~ 158 (160)
..+++.+ +.++..... ...+.++.+.+...+.|.||+.. |-+.+ ..+++.+... .++|+-++|-..
T Consensus 21 ~~l~~~g--~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~G-GDGTi-----~ev~ngl~~~~~~~~~~lgiiP~GT 90 (293)
T TIGR03702 21 GDLRDEG--IQLHVRVTWEKGDAQRYVAEALALGVSTVIAGG-GDGTL-----REVATALAQIRDDAAPALGLLPLGT 90 (293)
T ss_pred HHHHHCC--CeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEc-CChHH-----HHHHHHHHhhCCCCCCcEEEEcCCc
Confidence 3456666 666554333 35566677666566778777642 33322 3344555542 346888888543
No 157
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=65.63 E-value=26 Score=25.98 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=34.8
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec-CCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH-GYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~-~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+..+.++..+ ++|+||+|.. --+.+--.+.=.-...-+++++.|++.|-+
T Consensus 172 ~~~p~vl~AI~--~AD~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 172 RPAPEVLEAIE--DADLVIIGPSNPVTSIGPILALPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhhhccchhHHHHHHhCCCCEEEEcC
Confidence 46678888888 8999999954 334444444444556677888888887743
No 158
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=65.32 E-value=18 Score=24.58 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=27.1
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
+++|++++.+|..+-.+.++.-.+.+. + .++.++-
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~~-g--~~V~vv~ 35 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTKR-G--YQVTVLM 35 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHHC-C--CEEEEEE
Confidence 589999999999888888888888543 5 5665543
No 159
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=64.81 E-value=48 Score=25.60 Aligned_cols=117 Identities=10% Similarity=0.051 Sum_probs=63.6
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
.++||+++.+|-.+-.+++.+-.+-+ .+ +++.++.--....+..+.. -+.+
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L~~-~g--a~v~vvmt~~a~~fv~p~~----------------------~~~~---- 54 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLLRR-SG--AEVRVVMTESARKFITPLT----------------------FQAL---- 54 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHHhh-CC--CeeEEEcchhhhhhcCccc----------------------HHHh----
Confidence 46999999999888888877777744 45 5777765544332211110 0000
Q ss_pred HHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccce---eeccchhHHHhhcCCCCEEEecCCC
Q 031383 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKR---ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~---~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
.+ +..+. .........+.+..-...+|++++.....+.+.. .+-.+.+...+..+.+|+++.|...
T Consensus 55 -----s~-~~v~t--~~~~~~~~~~~HI~l~~~adl~lvaPaTan~i~Kla~g~aD~~~t~~~~a~~~p~~~aPamn 123 (392)
T COG0452 55 -----SG-NPVYT--LLDEELTGSVEHIELARWADLLLVAPATANTIAKLAVGIADNLSTTTLLAAKAPLVLAPAMN 123 (392)
T ss_pred -----hC-CCccc--cccccccccccHhhhhhccCEEEecCCChhHHHHHHHhhhccHHHHHHHHhcCcEEEecCcC
Confidence 01 12222 1111222222222222289998887655554444 3333344456666778999998654
No 160
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.66 E-value=73 Score=25.60 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=63.1
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
||-=.+|.|+|=--|-.....|.|+.+. ++.++-+....... -..+++..++
T Consensus 378 PYVi~fvGVNGVGKSTNLAKIayWLlqN-----kfrVLIAACDTFRs-----------------------GAvEQLrtHv 429 (587)
T KOG0781|consen 378 PYVISFVGVNGVGKSTNLAKIAYWLLQN-----KFRVLIAACDTFRS-----------------------GAVEQLRTHV 429 (587)
T ss_pred CeEEEEEeecCccccchHHHHHHHHHhC-----CceEEEEeccchhh-----------------------hHHHHHHHHH
Confidence 4555677888877788889999999764 33444433322110 1222222233
Q ss_pred HHHHHhcCCcceEEE-EEecC----ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHH
Q 031383 84 EAVYRNFQNNIHVKR-VVGCG----DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYC 143 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~g----~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~l 143 (160)
+.+..-.| -.++. .-.+| .++.+-+++|+.++.|+|.|-+-||-.-..-++++.+.-+
T Consensus 430 ~rl~~l~~--~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~ 492 (587)
T KOG0781|consen 430 ERLSALHG--TMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLI 492 (587)
T ss_pred HHHHHhcc--chhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHH
Confidence 33222111 11111 01122 4677888999999999999988777666666667665433
No 161
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=64.66 E-value=34 Score=24.19 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEec-----CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCE
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGC-----GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
...+..+.+.+++.| ..+...... ++..+.|....++++++-|.+-..+...+.+ ..+.+.....||+
T Consensus 48 ~saMRhfa~~L~~~G--~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~-----~l~~~~~~~~i~~ 120 (224)
T PF04244_consen 48 FSAMRHFADELRAKG--FRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQ-----RLESLAQQLGIPL 120 (224)
T ss_dssp HHHHHHHHHHHHHTT----EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHH-----HHHH----SSS-E
T ss_pred HHHHHHHHHHHHhCC--CEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHH-----HHHhhhcccCCce
Confidence 335556666677778 666666555 2567899999999999999997666554443 3356777788999
Q ss_pred EEecCC
Q 031383 152 VIVKHP 157 (160)
Q Consensus 152 lvv~~~ 157 (160)
-+++++
T Consensus 121 ~~~~~~ 126 (224)
T PF04244_consen 121 EVLEDP 126 (224)
T ss_dssp EEE--T
T ss_pred EEeCCC
Confidence 998765
No 162
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=64.48 E-value=9 Score=28.87 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=37.0
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
+...|++.+++.++|++|.|.-=..+--+..-|.++..+-.+..+|++.-
T Consensus 68 a~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 55678899999999999999432222223445778888888999999864
No 163
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=64.40 E-value=68 Score=25.16 Aligned_cols=92 Identities=9% Similarity=0.033 Sum_probs=50.5
Q ss_pred EEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR 88 (160)
Q Consensus 9 lv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (160)
++...|+--+..+...|..+....+ -.+.++..-..... ..+++.....
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D~~R~~-----------------------------a~~QL~~~a~ 152 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACDLYRPA-----------------------------AIEQLKVLGQ 152 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEeccccchH-----------------------------HHHHHHHHHH
Confidence 4445677677788888888764445 35655544321110 1123333344
Q ss_pred hcCCcceEEEEEecCChh---hHHHHHhhhhCCCEEEEeecCCcccce
Q 031383 89 NFQNNIHVKRVVGCGDAK---DVICGTVEKLEADTLVMGSHGYGFIKR 133 (160)
Q Consensus 89 ~~~~~~~~~~~~~~g~~~---~~i~~~a~~~~~dllvig~~~~~~~~~ 133 (160)
+.+ +++.......++. ...++.+...++|+|++-+.++.....
T Consensus 153 ~~g--vp~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~ 198 (428)
T TIGR00959 153 QVG--VPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDE 198 (428)
T ss_pred hcC--CceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCH
Confidence 455 5544332222443 334555666789999999888765433
No 164
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=64.28 E-value=45 Score=25.37 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=34.0
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec--CCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH--GYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~--~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
......++.+.+..+|+|.|.-. ...+++ ..+.+++..++||+++-.
T Consensus 34 ~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~------~l~~im~~~p~pVimvss 82 (350)
T COG2201 34 RNGREAIDKVKKLKPDVITLDVEMPVMDGLE------ALRKIMRLRPLPVIMVSS 82 (350)
T ss_pred CCHHHHHHHHHhcCCCEEEEecccccccHHH------HHHHHhcCCCCcEEEEec
Confidence 44455567777789999999843 344433 457899999999999854
No 165
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=64.21 E-value=29 Score=21.21 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+..++.++..| ..++..-.. ..++.++.. ++|++.+|..-+-.. ...+++...-..||-+++.
T Consensus 19 ~Km~~aA~~kg--~~~~I~A~s---~~e~~~~~~--~~DvvLlGPQv~y~~------~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 19 TKMKKAAESKG--KDVTIEAYS---ETELSEYID--NADVVLLGPQVRYML------KQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred HHHHHHHHhCC--CceEEEEec---hhHHHHhhh--cCCEEEEChHHHHHH------HHHHHHhcccCCCeEEeCH
Confidence 33444445566 555554433 334445555 999999996543322 2446777777789988864
No 166
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=64.17 E-value=9 Score=28.34 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=32.3
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec-CCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH-GYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~-~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+....++..+ .+|+||+|.. -.+.+--.+.=.-...-++++++|++.|.+
T Consensus 172 ~~~p~~l~AI~--~AD~IiigPgs~~TSI~P~L~v~gi~~Ai~~s~a~kV~V~n 223 (300)
T PF01933_consen 172 KANPEALEAIE--EADLIIIGPGSLYTSIIPNLLVPGIREAIRESKAPKVYVSN 223 (300)
T ss_dssp -B-HHHHHHHH--H-SEEEE-SS-CCCCCHHHHTSHHHHHHHHHSSSEEEEE-S
T ss_pred CCCHHHHHHHH--hCCEEEEcCCCchhhhcccccchhHHHHHHhCCCCEEEEcC
Confidence 56677888888 8999999954 344444444444566778888899998865
No 167
>PRK00509 argininosuccinate synthase; Provisional
Probab=63.97 E-value=67 Score=24.95 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=30.2
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
+++|+|+++|.-+|..++.++.+. .+ .+++.+++....
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~---lG--~eViavt~d~Gq 39 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKET---YG--CEVIAFTADVGQ 39 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHh---hC--CeEEEEEEecCC
Confidence 479999999999999888887763 25 589999987543
No 168
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=63.58 E-value=59 Score=24.18 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=38.6
Q ss_pred cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 102 CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 102 ~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.+....+++..|.+.+-++-|+-..++..++ |...-+-|++..+|+.++.+.
T Consensus 128 ~S~~v~~~l~~A~~~~k~~~V~VtESRP~~e----G~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 128 FSKTVLEVLKTAADRGKRFKVIVTESRPRGE----GRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred CcHHHHHHHHHhhhcCCceEEEEEcCCCcch----HHHHHHHHHHcCCceEEEech
Confidence 3477888888888777656666656666554 777788899999999988753
No 169
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=63.44 E-value=47 Score=26.02 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEee
Q 031383 63 DVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~ 125 (160)
.....+....-+..+++++++.+.+++.| ..+..........+.|.+.+++++...|+.|.
T Consensus 36 ~~~~~ik~~~~~~ld~~l~~~~~~~~~~g--~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~k 96 (432)
T TIGR00273 36 ELVKEIKLKVLENLDFYLDQLKENVTQRG--GHVYYAKTAEEARKIIGKVAQEKNGKKVVKSK 96 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 34455555566778888888888888888 55544444446777888999999999999983
No 170
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=63.30 E-value=26 Score=22.70 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=25.7
Q ss_pred HHHHHhhhhCCCEEEEeecC-CcccceeeccchhHHHhhcC-CCCEEEecC
Q 031383 108 VICGTVEKLEADTLVMGSHG-YGFIKRALLGSVSDYCAKHV-KCPVVIVKH 156 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~~~-~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~ 156 (160)
.+.++++++++|-||+-.+. .+.+.+.-.|--.+.+++-. .|+|-++.+
T Consensus 52 ~f~kl~~dy~Vd~VvIk~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~ 102 (138)
T PF11215_consen 52 TFAKLMEDYKVDKVVIKERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSP 102 (138)
T ss_pred HHHHHHHHcCCCEEEEEecccCCCccCCchhHHHHHHHHhcCCCcEEEECH
Confidence 44556666677777775442 33333333333445555555 466666643
No 171
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=63.21 E-value=45 Score=22.93 Aligned_cols=67 Identities=7% Similarity=-0.032 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCcceEEEEEe-cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC---CCEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK---CPVVIV 154 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~---~pVlvv 154 (160)
-+...++..| ++.... ..-+.+.+++.+.+.++|+|.+...-...... +....+.+-...+ ++|++-
T Consensus 101 ~v~~~l~~~G----~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~lr~~~~~~~~~i~vG 171 (201)
T cd02070 101 LVATMLEANG----FEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGG--MKEVIEALKEAGLRDKVKVMVG 171 (201)
T ss_pred HHHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHHCCCCcCCeEEEE
Confidence 3445666677 443322 33688999999999999999998654343332 2445555545443 455543
No 172
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=63.04 E-value=56 Score=23.77 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=39.3
Q ss_pred cceEEEEEecCC--hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 93 NIHVKRVVGCGD--AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 93 ~~~~~~~~~~g~--~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
++.+-..+...+ ..-++.+.+++.++|-+++...-......--+-..-+.|...++.|+++...
T Consensus 70 ~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 70 RVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp SSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEB
T ss_pred ceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEEC
Confidence 366666666544 4446678899999998877643222221111123457788889999999854
No 173
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=62.90 E-value=59 Score=23.93 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=50.9
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+..||.|...++.....|+-.+++--. .+ ++|.++-.-.+. +
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~~-~~--~~i~~visn~~~-----------------------------------~ 129 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIGE-LP--MDIVGVVSNHPD-----------------------------------L 129 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcCC-CC--cEEEEEEECCcc-----------------------------------H
Confidence 456899999988777777777765532 23 455554433221 2
Q ss_pred HHHHHhcCCcceEEEEEec-C---ChhhHHHHHhhhhCCCEEEEeec
Q 031383 84 EAVYRNFQNNIHVKRVVGC-G---DAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-g---~~~~~i~~~a~~~~~dllvig~~ 126 (160)
...+++.| +++...... . +....+.+..++.++|++|+...
T Consensus 130 ~~lA~~~g--Ip~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 130 EPLAAWHG--IPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARY 174 (286)
T ss_pred HHHHHHhC--CCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeCh
Confidence 22255667 666543211 1 23446788888899999999754
No 174
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=62.34 E-value=10 Score=24.78 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK 145 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~ 145 (160)
++++.+.+++.| +.+............+.+..+ .+|.|+++.-.....-+.+.++-....++
T Consensus 2 ~~~~~~~f~~~g--~~v~~l~~~~~~~~~~~~~i~--~ad~I~~~GG~~~~l~~~l~~t~l~~~i~ 63 (154)
T PF03575_consen 2 VEKFRKAFRKLG--FEVDQLDLSDRNDADILEAIR--EADAIFLGGGDTFRLLRQLKETGLDEAIR 63 (154)
T ss_dssp HHHHHHHHHHCT---EEEECCCTSCGHHHHHHHHH--HSSEEEE--S-HHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHCC--CEEEEEeccCCChHHHHHHHH--hCCEEEECCCCHHHHHHHHHhCCHHHHHH
Confidence 456667777888 665555444445557777777 89999998554443333334444444443
No 175
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=62.15 E-value=80 Score=25.24 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=60.6
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
..+|+.++.|.--...+.+|.++ + -.+.++-|-..+... -+... .
T Consensus 360 gdviltyg~s~vV~~ill~A~~~----~--k~frVvVVDSRP~~E---------------------G~~~l--------r 404 (556)
T KOG1467|consen 360 GDVLLTYGSSSVVNMILLEAKEL----G--KKFRVVVVDSRPNLE---------------------GRKLL--------R 404 (556)
T ss_pred CCEEEEecchHHHHHHHHHHHHh----C--cceEEEEEeCCCCcc---------------------hHHHH--------H
Confidence 35677778776555555555555 5 355665555433321 11222 2
Q ss_pred HHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+...| ++++.....+ ..-|. ...+-|++|++. .+.+-...-.+-..-+.++.++|||++=+
T Consensus 405 ~Lv~~G--inctYv~I~a--~syim-----~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE 469 (556)
T KOG1467|consen 405 RLVDRG--INCTYVLINA--ASYIM-----LEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCE 469 (556)
T ss_pred HHHHcC--CCeEEEEehh--HHHHH-----HhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEec
Confidence 234467 8888777643 33333 377899999875 33343333223344456666799999843
No 176
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=62.08 E-value=11 Score=24.80 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc-------CCCCEEEecCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH-------VKCPVVIVKHP 157 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~-------~~~pVlvv~~~ 157 (160)
..+.|.+++..+++|+|++|..+... +.+.. ....++.+ .++||.++.+.
T Consensus 51 ~~~~l~~~i~~~kP~vI~v~g~~~~s--~~l~~-~v~~~v~~~~~~~~~~~i~V~~v~~~ 107 (150)
T PF14639_consen 51 DMERLKKFIEKHKPDVIAVGGNSRES--RKLYD-DVRDIVEELDEDEQMPPIPVVIVDDE 107 (150)
T ss_dssp HHHHHHHHHHHH--SEEEE--SSTHH--HHHHH-HHHHHHHHTTB-TTS-B--EEE---T
T ss_pred HHHHHHHHHHHcCCeEEEEcCCChhH--HHHHH-HHHHHHHHhhhcccCCCceEEEECcH
Confidence 34556677777888888885433221 11222 22333332 25888887654
No 177
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=61.92 E-value=42 Score=23.62 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=35.8
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....+..++.++|.+|+++...... -.+-++.++..+..|.+|+.+.+
T Consensus 50 aav~~~~e~~~pDfvi~isPNpaaP----GP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 50 AAVTEMLEEFNPDFVIYISPNPAAP----GPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC----CchHHHHHHhhcCCCEEEecCCc
Confidence 3455778889999999987654422 23467889999999999997654
No 178
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=61.92 E-value=36 Score=21.15 Aligned_cols=88 Identities=6% Similarity=0.071 Sum_probs=49.5
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
|.+|+++..+. .+....+.+-.++.... .+..+...+.... +++.++++
T Consensus 1 M~~ili~sHG~-~A~gl~~s~~~i~G~~~---~i~~i~~~~~~~~---------------------------~~~~~~l~ 49 (116)
T TIGR00824 1 MIAIIISGHGQ-AAIALLKSAEMIFGEQN---NVGAVPFVPGENA---------------------------ETLQEKYN 49 (116)
T ss_pred CcEEEEEecHH-HHHHHHHHHHHHcCCcC---CeEEEEcCCCcCH---------------------------HHHHHHHH
Confidence 35788888887 56666666666655433 6777776654432 11222222
Q ss_pred HHHHhc--CCcceEEEEEecCChhhHHHHHhhhhCCCE-EEEe
Q 031383 85 AVYRNF--QNNIHVKRVVGCGDAKDVICGTVEKLEADT-LVMG 124 (160)
Q Consensus 85 ~~~~~~--~~~~~~~~~~~~g~~~~~i~~~a~~~~~dl-lvig 124 (160)
+.+++. +.++-+-+....|++......+..+ ..++ +|-|
T Consensus 50 ~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~-~~~~~vIsG 91 (116)
T TIGR00824 50 AALADLDTEEEVLFLVDIFGGSPYNAAARIIVD-KPHMDVIAG 91 (116)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh-cCCEEEEEe
Confidence 222222 1126666777778998888877643 2344 4444
No 179
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=61.75 E-value=57 Score=24.81 Aligned_cols=26 Identities=4% Similarity=-0.119 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
...+.+.+++|+++|++.+ .+|+++|
T Consensus 162 r~~~eRI~r~AF~~A~~r~--~~Vt~v~ 187 (349)
T TIGR00169 162 KPEIERIARVAFEMARKRR--KKVTSVD 187 (349)
T ss_pred HHHHHHHHHHHHHHHHHcC--CcEEEEE
Confidence 3568899999999999887 4777776
No 180
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=61.68 E-value=68 Score=24.26 Aligned_cols=106 Identities=10% Similarity=0.012 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcce
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
+....++++|..+... + +.+.-.+++.+......+.+. .++-+..+.+.+++.| +.
T Consensus 104 Es~e~~~~~A~~lk~~-g--a~~~r~~~fKpRTsp~sf~G~-------------------g~~gL~~L~~~~~~~G--l~ 159 (335)
T PRK08673 104 ESEEQILEIARAVKEA-G--AQILRGGAFKPRTSPYSFQGL-------------------GEEGLKLLAEAREETG--LP 159 (335)
T ss_pred CCHHHHHHHHHHHHHh-c--hhhccCcEecCCCCCcccccc-------------------cHHHHHHHHHHHHHcC--Cc
Confidence 3455677777777443 4 465555667655432222211 1333445566677788 88
Q ss_pred EEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 96 ~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+-+.+..-...+.+.+ . +|++=+|++......- -+-+.++..||++=+..
T Consensus 160 v~tev~d~~~~~~l~~----~-vd~lqIgAr~~~N~~L-------L~~va~~~kPViLk~G~ 209 (335)
T PRK08673 160 IVTEVMDPRDVELVAE----Y-VDILQIGARNMQNFDL-------LKEVGKTNKPVLLKRGM 209 (335)
T ss_pred EEEeeCCHHHHHHHHH----h-CCeEEECcccccCHHH-------HHHHHcCCCcEEEeCCC
Confidence 8777776555555443 3 7899999876554321 13344567888876553
No 181
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=61.65 E-value=35 Score=20.94 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=40.1
Q ss_pred HHhcCCcceEEEEEecCC-hhhHHHHHhhh-hCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 87 YRNFQNNIHVKRVVGCGD-AKDVICGTVEK-LEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~-~~~~i~~~a~~-~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
+++.| ++++....... -...|.+..++ .++|+||--..+...-...--|...++.....++|++.-
T Consensus 38 L~~~G--i~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 38 LADAG--IPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred HHHcC--CceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 34466 77766543321 33668888899 999999885443331111223556666666668888753
No 182
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=61.57 E-value=20 Score=22.60 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=59.4
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
|||++.+.|+.....+.++..++.+. + .++.++--- ...+++....
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g--~~v~vv~S~------------------------------~A~~~~~~~~- 46 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-G--WEVRVVLSP------------------------------SAERFVTPEG- 46 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-T--SEEEEEESH------------------------------HHHHHSHHHG-
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-C--CEEEEEECC------------------------------cHHHHhhhhc-
Confidence 68999999999888888888888665 5 465544321 1111111111
Q ss_pred HHHhcCCcceEEE-EEecCChhhHHHHHhhhhCCCEEEEeecCCcccc---eeeccchhHHHhhcC---CCCEEEecCC
Q 031383 86 VYRNFQNNIHVKR-VVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIK---RALLGSVSDYCAKHV---KCPVVIVKHP 157 (160)
Q Consensus 86 ~~~~~~~~~~~~~-~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~---~~~~gs~~~~ll~~~---~~pVlvv~~~ 157 (160)
..+..+..++ ....++.... ++..+ .+|++|+..-..+.+. ..+-.+....++... ..||+++|..
T Consensus 47 ---~~~~~v~~~~~~~~~~~~~~~-~~~~~--~~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~m 119 (129)
T PF02441_consen 47 ---LTGEPVYTDWDTWDRGDPAEH-IELSR--WADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPAM 119 (129)
T ss_dssp ---HCCSCEECTHCTCSTTTTTCH-HHHHH--TESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEEE
T ss_pred ---cccchhhhccccCCCCCCcCc-ccccc--cCCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEeC
Confidence 1110111110 0112233333 23344 7999999854433333 334455666677777 8999999854
No 183
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=61.17 E-value=31 Score=26.24 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=26.8
Q ss_pred ChhhHHHHHhh-hhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVE-KLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~-~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
+....++..+. +.+|+.||+=.+.-+.-+.+ -..++..++|++.++-..
T Consensus 58 ~~i~~~~~~an~~~~c~gvi~wMhTfSpakmw------I~gl~~l~kPllhl~tQ~ 107 (359)
T PF02610_consen 58 EEITRVCKEANADEDCDGVITWMHTFSPAKMW------IPGLQRLQKPLLHLHTQP 107 (359)
T ss_dssp HHHHHHHHHHHH-TTEEEEEEEESS---THHH------HHHHHH--S-EEEEE--S
T ss_pred HHHHHHHHHhhccCCccEEeehhhhhccHHHH------HHHHHHhCCCeEEeeccc
Confidence 44445555554 35888888866665544433 467889999999986543
No 184
>PHA02546 47 endonuclease subunit; Provisional
Probab=60.96 E-value=14 Score=27.75 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhcC
Q 031383 78 SVMNRAEAVYRNFQ 91 (160)
Q Consensus 78 ~~~~~~~~~~~~~~ 91 (160)
..++++.+.+.+.+
T Consensus 26 ~~l~~ii~~a~~~~ 39 (340)
T PHA02546 26 KFIKQAIEYSKAHG 39 (340)
T ss_pred HHHHHHHHHHHHcC
Confidence 34445555555444
No 185
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=60.58 E-value=55 Score=22.82 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=47.3
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
||.|-++++-....++-.+++-- ..+ +++ +.|+...... .+.+.
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~-~l~--~~i--~~visn~~~~-------------------------------~~~~~ 44 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDG-RVN--GDV--VVVVTNKPGC-------------------------------GGAEY 44 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcC-CCC--eEE--EEEEEeCCCC-------------------------------hHHHH
Confidence 47777888877777777665542 222 344 4444433211 12345
Q ss_pred HHhcCCcceEEEEEecC-----ChhhHHHHHhhhhCCCEEEEeec
Q 031383 87 YRNFQNNIHVKRVVGCG-----DAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g-----~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+++.| +++....... ...+++++..++.++|++|+...
T Consensus 45 A~~~g--Ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy 87 (207)
T PLN02331 45 ARENG--IPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGY 87 (207)
T ss_pred HHHhC--CCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeCc
Confidence 55667 6654322211 12457788888999999999643
No 186
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=60.41 E-value=63 Score=23.47 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEec
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVK 155 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~ 155 (160)
+..+++...+.+.+ +.+....... .....+.+.+.+.++|.||+..-+ +.+ ...++.+..... .|+-++|
T Consensus 19 ~~~~~i~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGD-GTl-----~~v~~~l~~~~~~~~lgiiP 90 (293)
T TIGR00147 19 KPLREVIMLLREEG--MEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGD-GTI-----NEVVNALIQLDDIPALGILP 90 (293)
T ss_pred HHHHHHHHHHHHCC--CEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCC-ChH-----HHHHHHHhcCCCCCcEEEEc
Confidence 34455566667777 6666544433 233444544545578887774332 322 334455554333 3666777
Q ss_pred CC
Q 031383 156 HP 157 (160)
Q Consensus 156 ~~ 157 (160)
..
T Consensus 91 ~G 92 (293)
T TIGR00147 91 LG 92 (293)
T ss_pred Cc
Confidence 54
No 187
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=60.37 E-value=41 Score=24.14 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=34.1
Q ss_pred HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 108 VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
...+..++.++|++|+.+...... -.+-++.++.....|.+|+-+.+.
T Consensus 51 ~~~~~~~~~~pDf~i~isPN~a~P----GP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 51 VVKKMLEEWKPDFVIVISPNPAAP----GPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCC----CchHHHHHHHhcCCCEEEEcCCCc
Confidence 344555788999999986543321 234578899999999999976553
No 188
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=60.17 E-value=20 Score=24.85 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEee
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~ 125 (160)
+..+++++...+.+ ..+...+..| ....-+..+.+.++|.+|.|+
T Consensus 151 ~KI~~l~~~~~~~~--~~~~I~vDGG-I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 151 EKIRELRKLIPENG--LDFEIEVDGG-INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHHHT--CGSEEEEESS-ESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHhcC--CceEEEEECC-CCHHHHHHHHHcCCCEEEECH
Confidence 34455566666666 5666666644 444445555566999999995
No 189
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=60.15 E-value=68 Score=23.74 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=27.4
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
+|+|+++|.-+|..++..+.+. .+ .++.++|+-...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG--~~v~aV~vd~g~ 36 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IG--DRLTCVFVDNGL 36 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hC--CcEEEEEecCCC
Confidence 5899999999898888777663 24 478999986543
No 190
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=59.85 E-value=22 Score=26.48 Aligned_cols=51 Identities=27% Similarity=0.279 Sum_probs=34.2
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC-CcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG-YGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~-~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+....++.++ ++|+||+|... .+.+--.+.-.-..+-+++++||++.|.+
T Consensus 164 ~~~~~a~~AI~--~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi~~s~a~kV~v~N 215 (308)
T cd07187 164 KANPEALEAIE--EADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICN 215 (308)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhhhcCchhHHHHHHhCCCCEEEEec
Confidence 56668888888 89999999543 23333333333445566888899888865
No 191
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=59.79 E-value=38 Score=25.14 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=35.9
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---Ccccceeeccchh-HHHhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVS-DYCAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~-~~ll~~~~~pVlvv~ 155 (160)
+.+.| ++++..... .+........+|.+++|... .+++-.. .|+.. .-+.++.+.||+++-
T Consensus 174 L~~~g--I~vtlI~Ds-----a~~~~m~~~~vd~VlvGAd~v~~nG~v~nk-~GT~~lA~~Ak~~~vPv~V~a 238 (303)
T TIGR00524 174 LMQDG--IDVTLITDS-----MAAYFMQKGEIDAVIVGADRIARNGDVANK-IGTYQLAVLAKEFRIPFFVAA 238 (303)
T ss_pred HHHCC--CCEEEEChh-----HHHHHccccCCCEEEEcccEEecCCCEeEh-hhHHHHHHHHHHhCCCEEEec
Confidence 34456 666554432 23333444589999999764 3334433 35544 445577779999984
No 192
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=59.70 E-value=76 Score=24.19 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=22.3
Q ss_pred CCCCceEEEEEecC----ChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 1 MNTNERRVVVAVDE----SEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 1 m~~~~~~Ilv~~d~----s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
|...+++||+-... ...+..|++.+++.....+ .++.++-++
T Consensus 1 ~~~~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~--~~~~~~D~~ 46 (391)
T PRK13608 1 MVTQNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDH--LSVIEHDLF 46 (391)
T ss_pred CCCCCceEEEEECCCCchHHHHHHHHHHHHHhhCCCC--ceEEEeehH
Confidence 55677889888632 2344455555554322212 355555544
No 193
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=59.63 E-value=63 Score=23.21 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=64.6
Q ss_pred EEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (160)
Q Consensus 8 Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (160)
.=|+..+.......++.++++|+..+ ..|-.-=-++.... ++........++........+..+...+
T Consensus 30 aNIACG~HAGDp~~M~~tv~lA~~~g--V~iGAHPsyPD~~g----------FGRr~m~~s~~el~~~v~yQigaL~~~a 97 (242)
T PF03746_consen 30 ANIACGFHAGDPETMRRTVRLAKEHG--VAIGAHPSYPDREG----------FGRRSMDISPEELRDSVLYQIGALQAIA 97 (242)
T ss_dssp EEEE-SSSS--HHHHHHHHHHHHHTT---EEEEE---S-TTT----------TT-S-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccCHHHHHHHHHHHHHcC--CEeccCCCCCCCCC----------CCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34566666667788899999999988 34333222222211 1333334444555666666677777888
Q ss_pred HhcCCcceEEEE----Eec------CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 88 RNFQNNIHVKRV----VGC------GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 88 ~~~~~~~~~~~~----~~~------g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
+..| .++..+ ..+ ...++.|++.+.+.+.++.++|.. ||...+..++...+++
T Consensus 98 ~~~g--~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~a----------gs~~~~~A~~~Gl~~~ 160 (242)
T PF03746_consen 98 AAEG--VPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLA----------GSELEKAAKELGLPVV 160 (242)
T ss_dssp HHTT----EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEET----------TSHHHHHHHHCT--EE
T ss_pred HHcC--CeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcC----------CcHHHHHHHHCCCcEE
Confidence 8888 544433 222 256788999999999999999854 3344455555555443
No 194
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=59.59 E-value=52 Score=23.79 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=25.5
Q ss_pred CCCEEEEeecC---CcccceeeccchhH-HHhhcCCCCEEEec
Q 031383 117 EADTLVMGSHG---YGFIKRALLGSVSD-YCAKHVKCPVVIVK 155 (160)
Q Consensus 117 ~~dllvig~~~---~~~~~~~~~gs~~~-~ll~~~~~pVlvv~ 155 (160)
.+|.+++|++. .+++-.. .|+..- -+.++..+||+++-
T Consensus 151 ~vd~VlvGAd~V~~nG~v~nk-vGT~~~Al~A~~~~vPv~V~~ 192 (253)
T PRK06372 151 NVDAVIVGSDSVLYDGGLIHK-NGTFPLALCARYLKKPFYSLT 192 (253)
T ss_pred hCCEEEECccEEecCCCEeeh-hhHHHHHHHHHHcCCCEEEEe
Confidence 69999999865 3334443 355444 45577789999874
No 195
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=59.25 E-value=81 Score=24.33 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=28.1
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
.-.++++.++|.-+|..|+-.+.+. + .++..+|+.
T Consensus 179 s~gkvlvllSGGiDSpVAa~ll~kr----G--~~V~~v~f~ 213 (381)
T PRK08384 179 TQGKVVALLSGGIDSPVAAFLMMKR----G--VEVIPVHIY 213 (381)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHc----C--CeEEEEEEE
Confidence 4478999999998888776666553 6 799999995
No 196
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.15 E-value=76 Score=24.02 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=32.0
Q ss_pred HHhcCCcceEEEEEecC-ChhhHH---HHHhhhhCCCEEEEeecCCcccceeecc
Q 031383 87 YRNFQNNIHVKRVVGCG-DAKDVI---CGTVEKLEADTLVMGSHGYGFIKRALLG 137 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g-~~~~~i---~~~a~~~~~dllvig~~~~~~~~~~~~g 137 (160)
.++.| +.+-.+. +| |++..+ +++|+..++|+|++-+-||-.-+..++.
T Consensus 190 ~er~g--v~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~ 241 (340)
T COG0552 190 GERLG--VPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMD 241 (340)
T ss_pred HHHhC--CeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHH
Confidence 33455 6655543 55 777655 4678889999999988776665554443
No 197
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=58.80 E-value=44 Score=25.36 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=37.2
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhHH-HhhcCCCCEEEecC
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSDY-CAKHVKCPVVIVKH 156 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~~-ll~~~~~pVlvv~~ 156 (160)
+.+.| ++++.... +. +...+...++|.+++|+.. .+++... .|+..-. +.++..+||+++-+
T Consensus 202 L~~~G--I~vtlI~D--sa---~~~~M~~~~vd~VivGAd~I~~nG~v~Nk-iGT~~lAl~Ak~~~vPfyV~a~ 267 (344)
T PRK05720 202 LYQAG--IDVTVITD--NM---AAHLMQTGKIDAVIVGADRIAANGDVANK-IGTYQLAIAAKYHGVPFYVAAP 267 (344)
T ss_pred HHHCC--CCEEEEcc--cH---HHHHhcccCCCEEEEcccEEecCCCEeeh-hhHHHHHHHHHHhCCCEEEecc
Confidence 34566 66665543 22 3344445579999999764 3334433 4554444 55677799999744
No 198
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=58.56 E-value=9.4 Score=27.51 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=33.6
Q ss_pred EEEEEecC-ChhhH-HHHHhhhhCCCEEEEeecCCccccee--------eccch-hHHHhhcCCCCEEEecCCCC
Q 031383 96 VKRVVGCG-DAKDV-ICGTVEKLEADTLVMGSHGYGFIKRA--------LLGSV-SDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 96 ~~~~~~~g-~~~~~-i~~~a~~~~~dllvig~~~~~~~~~~--------~~gs~-~~~ll~~~~~pVlvv~~~~~ 159 (160)
.+..+.+| +.... .++.+.+...+.||+-+.=.++.+-+ .+.-. ...=++..+||||+++...+
T Consensus 129 ~~~Iil~G~SiGt~~tv~Lasr~~~~alVL~SPf~S~~rv~~~~~~~~~~~d~f~~i~kI~~i~~PVLiiHgtdD 203 (258)
T KOG1552|consen 129 PERIILYGQSIGTVPTVDLASRYPLAAVVLHSPFTSGMRVAFPDTKTTYCFDAFPNIEKISKITCPVLIIHGTDD 203 (258)
T ss_pred CceEEEEEecCCchhhhhHhhcCCcceEEEeccchhhhhhhccCcceEEeeccccccCcceeccCCEEEEecccC
Confidence 44555555 32222 46777766788888864322211111 11000 02234566799999987654
No 199
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=58.19 E-value=23 Score=22.07 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 111 GTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 111 ~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
++.-+.+++.||+|+...+.+ -++.-+....++-.|-|.+.|.+
T Consensus 55 e~~lee~~E~ivvGTG~~G~l---~l~~ea~e~~r~k~~~vi~~pT~ 98 (121)
T COG1504 55 EELLEEGPEVIVVGTGQSGML---ELSEEAREFFRKKGCEVIELPTP 98 (121)
T ss_pred HHHHhcCCcEEEEecCceeEE---EeCHHHHHHHHhcCCeEEEeCCH
Confidence 333346999999996655543 35667888899999999888764
No 200
>PRK06850 hypothetical protein; Provisional
Probab=58.00 E-value=98 Score=24.93 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=39.9
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCC---CCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDT---NNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~---~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.++|++.|..+|..++..+.+-...... ...+++++.-..... .......++.++.+
T Consensus 36 P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~--------------------Pe~~~~v~~~l~~i 95 (507)
T PRK06850 36 PWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVEN--------------------PVVVDWVNKSLERI 95 (507)
T ss_pred CeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCcc--------------------HHHHHHHHHHHHHH
Confidence 3689999999898888877665432210 024455544332221 23345555566666
Q ss_pred HHHHHhcCCcceEEEE
Q 031383 84 EAVYRNFQNNIHVKRV 99 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (160)
...+++.+ +++.++
T Consensus 96 ~~~a~~~g--lpi~~~ 109 (507)
T PRK06850 96 NEAAKKQG--LPITPH 109 (507)
T ss_pred HHHHHHcC--CceEEE
Confidence 66666666 555443
No 201
>PRK14561 hypothetical protein; Provisional
Probab=57.96 E-value=58 Score=22.29 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=21.7
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
+|+|++.|.-+|..++..+.++ . ++.++++.
T Consensus 2 kV~ValSGG~DSslll~~l~~~----~---~v~a~t~~ 32 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF----Y---DVELVTVN 32 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc----C---CeEEEEEe
Confidence 5999999998888877766443 2 44566654
No 202
>PRK00766 hypothetical protein; Provisional
Probab=57.87 E-value=49 Score=22.87 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=40.2
Q ss_pred ceEEEEEecC-ChhhHHHHHhhh----hCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 94 IHVKRVVGCG-DAKDVICGTVEK----LEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 94 ~~~~~~~~~g-~~~~~i~~~a~~----~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
+-+......| |..+.|++..+. .+..+|++..-.-+++. . =..+.|-+++..||++|
T Consensus 43 v~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFN-v---vD~~~l~~~tg~PVI~V 104 (194)
T PRK00766 43 VLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFN-V---VDIEELYRETGLPVIVV 104 (194)
T ss_pred EEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeE-E---ecHHHHHHHHCCCEEEE
Confidence 5667777778 899999999876 35557777543333322 1 14578889999999999
No 203
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=57.82 E-value=36 Score=19.85 Aligned_cols=64 Identities=16% Similarity=0.065 Sum_probs=36.8
Q ss_pred HHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 86 VYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.+++.| +.+++.+.. +.....+.+..++.++|+||--....+... .--|...++..-...+|++
T Consensus 25 ~L~~~G--i~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~-~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 25 FLREAG--LPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQP-HEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHCC--CcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCccee-ccCcHHHHHHHHHcCCCee
Confidence 344566 766533221 222246899999999999998654312111 1135456666666666654
No 204
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=57.76 E-value=44 Score=20.84 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCc
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
-+...++..| ++...... .+.+.+++.+.+.++|.|++......
T Consensus 18 ~~~~~l~~~G----~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~ 62 (122)
T cd02071 18 VIARALRDAG----FEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGG 62 (122)
T ss_pred HHHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchh
Confidence 3445566777 66665554 68889999999999999999866433
No 205
>PRK05920 aromatic acid decarboxylase; Validated
Probab=57.48 E-value=31 Score=24.02 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=26.8
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
+.++|++++.|+-.+-.+++..-.+.+. + .++.++.
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~-g--~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAA-D--YEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHC-C--CEEEEEE
Confidence 4589999999998887777777777554 4 4655554
No 206
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=57.46 E-value=15 Score=21.81 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHhcCCcceEEEEEe-cCCh-h-h---HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 84 EAVYRNFQNNIHVKRVVG-CGDA-K-D---VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~g~~-~-~---~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.+.+++.| +++...+. .+.. . . .+.+..+++++||||--......... --|...+++.-...+|.+
T Consensus 23 a~~L~~~G--i~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~~-~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 23 AKFLKEHG--IEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQEH-TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHTT----EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHHT-HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHcC--CCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCccccc-CCcHHHHHHHHHcCCCCc
Confidence 35556677 76443322 2322 2 2 49999999999988887554333221 134455666666666654
No 207
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=57.05 E-value=50 Score=24.48 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=17.2
Q ss_pred eccchhHHHhhcCC-CCEEEec
Q 031383 135 LLGSVSDYCAKHVK-CPVVIVK 155 (160)
Q Consensus 135 ~~gs~~~~ll~~~~-~pVlvv~ 155 (160)
.++.+.+.|...+. +|||+.=
T Consensus 141 ~~~~l~~EL~~~~~~~PVL~av 162 (309)
T PF10236_consen 141 VFQALIRELKAQSKRPPVLVAV 162 (309)
T ss_pred HHHHHHHHHHhcccCCceEEEe
Confidence 45677889999998 9999863
No 208
>PRK08185 hypothetical protein; Provisional
Probab=57.03 E-value=73 Score=23.44 Aligned_cols=55 Identities=13% Similarity=-0.086 Sum_probs=42.2
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....++++.|++.+..+|+..+.+.......-+......+.+++++||.+-=++.
T Consensus 24 e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg 78 (283)
T PRK08185 24 CFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHG 78 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 7888999999999999999887654332233367788889999999988764443
No 209
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=56.97 E-value=55 Score=24.98 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=37.5
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhHH-HhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSDY-CAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~~-ll~~~~~pVlvv~ 155 (160)
+.+.| ++++..... .+........+|.+|+|... .+++.. -.|+..-. +.++-..||+++-
T Consensus 215 L~~~G--I~vtlI~Ds-----av~~~M~~~~Vd~VivGAd~I~~nG~v~N-KiGTy~lA~~Ak~~~vPfyV~A 279 (356)
T PRK08334 215 YHYDG--IPLKLISDN-----MAGFVMQQGKVDAIIVGADRIVANGDFAN-KIGTYTLAVLAKEHGIPFFTVA 279 (356)
T ss_pred HHHCC--CCEEEEehh-----HHHHHhhhcCCCEEEECccEEecCCCEee-hhhHHHHHHHHHHhCCCEEEEc
Confidence 34566 777655543 23334555689999999764 333333 34655444 5567779999984
No 210
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=56.91 E-value=7.1 Score=22.28 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=22.4
Q ss_pred cccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 129 GFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 129 ~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
.+++++.-| ..+++.++++-||.+-+.+.+
T Consensus 22 Ea~KgwRsG-aVdK~vkna~ePvyi~R~~~P 51 (79)
T PF10808_consen 22 EAWKGWRSG-AVDKIVKNAQEPVYIYRAKNP 51 (79)
T ss_pred HHHHHHhhc-chHHHhcCCCCcEEEEecCCc
Confidence 345555444 569999999999999987654
No 211
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=56.56 E-value=82 Score=23.61 Aligned_cols=75 Identities=16% Similarity=0.065 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecC--C---hhhHHHHHhhhhCCCEEEEeecCCccccee-eccchhHHHhhcCC
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCG--D---AKDVICGTVEKLEADTLVMGSHGYGFIKRA-LLGSVSDYCAKHVK 148 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~---~~~~i~~~a~~~~~dllvig~~~~~~~~~~-~~gs~~~~ll~~~~ 148 (160)
...+.++.+.+... . ++++..++-| + ....+.+.+.+.+++.+.+-.+.+...... .--.....+-+..+
T Consensus 122 lv~~iv~a~~~av~--~--iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~ 197 (323)
T COG0042 122 LLAEIVKAMVEAVG--D--IPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVP 197 (323)
T ss_pred HHHHHHHHHHHhhC--C--CCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCC
Confidence 33444444444433 2 4555555555 2 245799999999999999965443221110 11124455666666
Q ss_pred -CCEEE
Q 031383 149 -CPVVI 153 (160)
Q Consensus 149 -~pVlv 153 (160)
+||+.
T Consensus 198 ~ipvi~ 203 (323)
T COG0042 198 SIPVIA 203 (323)
T ss_pred CCeEEe
Confidence 66654
No 212
>PRK08349 hypothetical protein; Validated
Probab=56.45 E-value=62 Score=22.11 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=26.6
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
.++++.++|.-+|..++.++.+ .+ .++.++|+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g--~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RG--VEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cC--CeEEEEEEeC
Confidence 3689999999889888866554 35 6899999974
No 213
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=56.16 E-value=49 Score=24.97 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=36.7
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhHH-HhhcCCCCEEEecC
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSDY-CAKHVKCPVVIVKH 156 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~~-ll~~~~~pVlvv~~ 156 (160)
+.+.| +++..... +... ......++|.+++|... .+++... .|+..-. +.++.++||+++-+
T Consensus 202 L~~~G--I~vtlI~D--sav~---~~m~~~~vd~VivGAd~v~~nG~v~nk-iGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 202 LVQEG--IPATLITD--SMAA---HLMKHGEVDAVIVGADRIAANGDTANK-IGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred HHHCC--CCEEEEcc--cHHH---HHhcccCCCEEEEcccEEecCCCEeeh-hhHHHHHHHHHHhCCCEEEecc
Confidence 34567 66654433 2333 33334589999999764 3334333 4554444 45777799999843
No 214
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=56.11 E-value=11 Score=28.70 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=41.8
Q ss_pred EecCChhhHHHHHh--hhhCCC-EEEEeecCCcc----cceeeccchhHHHhhcCCCCEEEecCC
Q 031383 100 VGCGDAKDVICGTV--EKLEAD-TLVMGSHGYGF----IKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 100 ~~~g~~~~~i~~~a--~~~~~d-llvig~~~~~~----~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
..-|+....+...+ .-.++- ++++|++|..+ ..+.+.|.++..+|....+|..++++.
T Consensus 60 SGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~~lL~~~~i~~~~~~~~ 124 (361)
T TIGR03297 60 SGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITLSLLDALEIPWEVLSTD 124 (361)
T ss_pred CchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHHHHHHHcCCCEEECCCC
Confidence 44457888887774 333333 36778887555 346778999999999999999999643
No 215
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=56.00 E-value=82 Score=23.38 Aligned_cols=60 Identities=12% Similarity=0.019 Sum_probs=32.8
Q ss_pred ceEEEEEecCC--h---hhHHHHHhhhhCCCEEEEeecCCcc-cceeeccchhHHHhhcCCCCEEE
Q 031383 94 IHVKRVVGCGD--A---KDVICGTVEKLEADTLVMGSHGYGF-IKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 94 ~~~~~~~~~g~--~---~~~i~~~a~~~~~dllvig~~~~~~-~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
++++..++.|. . ...+++...+.+++.|.+..+.... ..+...-.....+....++||+.
T Consensus 123 ~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~ 188 (309)
T PF01207_consen 123 IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIA 188 (309)
T ss_dssp SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEE
T ss_pred cceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEE
Confidence 55555555542 1 4567788888999999997553222 11122333556777788888875
No 216
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=55.75 E-value=53 Score=21.18 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=30.1
Q ss_pred HHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 83 AEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
+...++..| ++..-.-- .+.+.+++.|.++++|+|.+++.-
T Consensus 21 v~~~l~~~G----feVi~LG~~v~~e~~v~aa~~~~adiVglS~l~ 62 (134)
T TIGR01501 21 LDHAFTNAG----FNVVNLGVLSPQEEFIKAAIETKADAILVSSLY 62 (134)
T ss_pred HHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 344566677 55554433 688999999999999999997643
No 217
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=55.62 E-value=75 Score=24.30 Aligned_cols=27 Identities=7% Similarity=-0.098 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEE
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v 43 (160)
...+.+.+++|+++|+..+ .+|+++|=
T Consensus 165 r~~~~Ri~r~Af~~A~~r~--~~Vt~v~K 191 (358)
T PRK00772 165 REEIERIARVAFELARKRR--KKVTSVDK 191 (358)
T ss_pred HHHHHHHHHHHHHHHHHcC--CcEEEEEC
Confidence 3568899999999998876 47777773
No 218
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=55.54 E-value=52 Score=21.03 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH 146 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~ 146 (160)
-+...++..| ++..-... ...+++++.+.++++|.+++.+...+.... +..+.+.|-..
T Consensus 21 iv~~~l~~~G----feVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~--~~~~~~~L~~~ 80 (132)
T TIGR00640 21 VIATAYADLG----FDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTL--VPALRKELDKL 80 (132)
T ss_pred HHHHHHHhCC----cEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHH--HHHHHHHHHhc
Confidence 3445666677 66555544 677899999999999999998665443332 34455555443
No 219
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=55.17 E-value=93 Score=23.79 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=62.8
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHH---------
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASE--------- 74 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 74 (160)
..++|+|++++.-+|+-++. +.+..+ -+|..+|..--.. ......-..++.....+...+
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~----lLk~QG--yeViGl~m~~~~~-----~~~~~C~s~~d~~da~~va~~LGIp~~~vd 70 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAY----LLKEQG--YEVIGLFMKNWDE-----DGGGGCCSEEDLRDAERVADQLGIPLYVVD 70 (356)
T ss_pred CCcEEEEEccCCHHHHHHHH----HHHHcC--CeEEEEEEEeecc-----CCCCcCCchhHHHHHHHHHHHhCCceEEEc
Confidence 35899999999977775443 334446 5888888653322 111122333333334333221
Q ss_pred HHHHHHHHHH-HHHHhcCCcceEEEEEecCC--hhhHHHHHhhhhCCCEEEEeecCC
Q 031383 75 SVNSVMNRAE-AVYRNFQNNIHVKRVVGCGD--AKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 75 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~--~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
..+++.+.+- .++.+++.+-.-.+-+.+.. --..+++++.+.++|.|+.|+.-+
T Consensus 71 f~~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar 127 (356)
T COG0482 71 FEKEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYAR 127 (356)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEe
Confidence 2223333222 23333432344455555542 335788999999999999997543
No 220
>PRK09875 putative hydrolase; Provisional
Probab=54.96 E-value=61 Score=23.92 Aligned_cols=51 Identities=6% Similarity=-0.059 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCC--CEEEEeecC
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEA--DTLVMGSHG 127 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~--dllvig~~~ 127 (160)
..++.+..+.....+.| +++.++...++...++++..++.++ +-||+|+-+
T Consensus 136 ~E~kvl~Aaa~a~~~TG--~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d 188 (292)
T PRK09875 136 LEEKVFIAAALAHNQTG--RPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCD 188 (292)
T ss_pred HHHHHHHHHHHHHHHHC--CcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCC
Confidence 34445555555566677 7788887667677777888888888 889999765
No 221
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=54.69 E-value=32 Score=24.24 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=32.1
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecCCCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKHPEE 159 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~~~~ 159 (160)
...+.+.+.+.+.|.+++|.+..-. .....+.+.+-+... .||++.|...+
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v~---~~~~~~~~~ik~~~~~~Pvilfp~~~~ 65 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGVS---STLDNVVRLIKRIRRPVPVILFPSNPE 65 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccchh---hhHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 4557777887889999999664221 122334444444444 89999987654
No 222
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=54.61 E-value=58 Score=24.54 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhHH-HhhcCCCCEEEecC
Q 031383 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSDY-CAKHVKCPVVIVKH 156 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~~-ll~~~~~pVlvv~~ 156 (160)
.+.+.| +++..... +. +..+....++|.+++|... .+++.. -.|+..-. +.++-.+||+++-+
T Consensus 191 eL~~~G--I~vtlI~D--sa---~~~~M~~~~Vd~VivGAd~I~aNG~v~N-KiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 191 ELAQEG--IDHAIIAD--NA---AGYFMRKKEIDLVIVGADRIASNGDFAN-KIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHHHCC--CCEEEEcc--cH---HHHHhhhcCCCEEEECccEEecCCCEee-hhhHHHHHHHHHHcCCCEEEecc
Confidence 344466 66654433 22 3334444579999999764 333333 34554444 45666799999843
No 223
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=54.05 E-value=30 Score=25.23 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=19.5
Q ss_pred HHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
..+.+.|.+-+.+.....++.+.|.+... ..+.+|+|
T Consensus 72 vIKsYsPdLIVHP~l~~~~av~~i~k~L~--RlhavVIG 108 (306)
T KOG3974|consen 72 VIKSYSPDLIVHPVLDQENAVDIIEKLLQ--RLHAVVIG 108 (306)
T ss_pred HHhhcCCceeecccccCCchHhHHHHHHh--heeEEEEC
Confidence 33444444555555555555555555444 56666666
No 224
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=53.65 E-value=89 Score=23.50 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
..+.+.+.+++|+++|++.+ .+|+++|
T Consensus 139 tr~~~eRi~r~AF~~A~~r~--~~Vt~v~ 165 (322)
T TIGR02088 139 TREGSERIARFAFNLAKERN--RKVTCVH 165 (322)
T ss_pred cHHHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence 45678899999999999887 3666655
No 225
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=53.26 E-value=1.1e+02 Score=23.86 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=42.4
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec--CCcccceeeccchhHHHhhcC---CCCEEEecCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH--GYGFIKRALLGSVSDYCAKHV---KCPVVIVKHP 157 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~--~~~~~~~~~~gs~~~~ll~~~---~~pVlvv~~~ 157 (160)
...+++..++.+.++..+|+|.. +...--..++.++++.+.++- .-|++++-..
T Consensus 258 ~sleaaa~~~~~~G~~a~Il~d~ieGEArevg~v~asiarev~~~g~Pf~~P~~llsGG 316 (422)
T COG2379 258 LSLEAAASEARALGFKAVILGDTIEGEAREVGRVHASIAREVARRGRPFKKPVVLLSGG 316 (422)
T ss_pred HHHHHHHHHHHhcCCeeEEeeccccccHHHHHHHHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 67788899999999999999974 444444467888999988887 5898887543
No 226
>TIGR00930 2a30 K-Cl cotransporter.
Probab=53.25 E-value=1.6e+02 Score=25.89 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=28.1
Q ss_pred hHHHHHhhhhCCCEEEEeecC--CcccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 107 DVICGTVEKLEADTLVMGSHG--YGFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~--~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
+-|.++.+ ++++|++.-.. .+.......=...+.|.+.. .|+|+|+..++
T Consensus 895 eli~~~S~--~a~lv~~~lp~p~~~~~~~~~Ym~~l~~lt~~l-~p~llvrGn~~ 946 (953)
T TIGR00930 895 ELLLEYSR--DAALVVLSLPVPRKGSISDELYMAWLEVLSEDL-PPVLLVRGNHR 946 (953)
T ss_pred HHHHHhCC--CCcEEEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CCeEEEecCCc
Confidence 33444444 88999997332 22122222223455555665 69999987665
No 227
>PRK04527 argininosuccinate synthase; Provisional
Probab=53.20 E-value=1.1e+02 Score=23.89 Aligned_cols=36 Identities=6% Similarity=0.173 Sum_probs=29.0
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
++|+|+++|.-+|.-++.++.+. + .+++.+++....
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~----G--~~Viavt~d~gq 38 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQER----G--YAVHTVFADTGG 38 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHc----C--CcEEEEEEEeCC
Confidence 78999999999999898887762 5 588888886543
No 228
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=53.06 E-value=29 Score=23.74 Aligned_cols=8 Identities=25% Similarity=0.704 Sum_probs=3.7
Q ss_pred EEEeecCC
Q 031383 121 LVMGSHGY 128 (160)
Q Consensus 121 lvig~~~~ 128 (160)
++.|.+..
T Consensus 81 ~~~GNHD~ 88 (223)
T cd00840 81 IIAGNHDS 88 (223)
T ss_pred EecCCCCC
Confidence 34455543
No 229
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=52.94 E-value=1.1e+02 Score=26.28 Aligned_cols=83 Identities=23% Similarity=0.258 Sum_probs=55.3
Q ss_pred cCChHHHHHHHHHHHhcCCC--CC-CCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031383 13 DESEESMHALSWCLNNLFSP--DT-NNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRN 89 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~--~~-~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (160)
.||--...|+-.++.-.... +. ...|.+|||.+.. ....+.+..+....+.
T Consensus 46 TGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk--------------------------ALn~Di~~rL~~~~~~ 99 (814)
T COG1201 46 TGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK--------------------------ALNNDIRRRLEEPLRE 99 (814)
T ss_pred CCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH--------------------------HHHHHHHHHHHHHHHH
Confidence 34434455555554443333 11 1469999999755 5556666666677777
Q ss_pred cCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEee
Q 031383 90 FQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 90 ~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~ 125 (160)
.| +++ .++.||..+.=-+....+.+|+|+.-.
T Consensus 100 ~G--~~v--~vRhGDT~~~er~r~~~~PPdILiTTP 131 (814)
T COG1201 100 LG--IEV--AVRHGDTPQSEKQKMLKNPPHILITTP 131 (814)
T ss_pred cC--Ccc--ceecCCCChHHhhhccCCCCcEEEeCh
Confidence 88 555 888998888877777788999999853
No 230
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=52.73 E-value=19 Score=27.99 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=35.6
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
...|++.+++.++|++|.|.-=..+--+..-|.++..+-.+..+|++.-
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 65 VARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3678899999999999999432222223445777888888899998764
No 231
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=52.68 E-value=20 Score=24.38 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=6.9
Q ss_pred hhHHHhhcCCCCEEEe
Q 031383 139 VSDYCAKHVKCPVVIV 154 (160)
Q Consensus 139 ~~~~ll~~~~~pVlvv 154 (160)
+...|++...+||++|
T Consensus 120 ~n~dia~~L~a~vIlV 135 (199)
T PF13500_consen 120 LNADIAKALGAPVILV 135 (199)
T ss_dssp EHHHHHHHHT-EEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3344444445544444
No 232
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=52.63 E-value=19 Score=27.99 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=35.6
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
...|++.+++.++|++|.|.-=..+--+..-|.++..+-.+..+|++.-
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 65 KAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3678899999999999999432222223445778888888899998764
No 233
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=52.02 E-value=61 Score=20.74 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=29.1
Q ss_pred HHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeec
Q 031383 83 AEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+...++..| ++..-..- .+.+.+++.|.++++|+|.+++-
T Consensus 19 v~~~L~~~G----feVidLG~~v~~e~~v~aa~~~~adiVglS~L 59 (128)
T cd02072 19 LDHAFTEAG----FNVVNLGVLSPQEEFIDAAIETDADAILVSSL 59 (128)
T ss_pred HHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 334566677 55443332 67899999999999999999764
No 234
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=51.75 E-value=80 Score=22.06 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEE
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVI 153 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlv 153 (160)
-+...++..| ++...... -+.+.+++.+.++++|+|.+...-...... +..+.+.|-..-. ++|++
T Consensus 107 iv~~~l~~~G----~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~--~~~~i~~L~~~~~~~~i~v 174 (213)
T cd02069 107 LVGVILSNNG----YEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDE--MVEVAEEMNRRGIKIPLLI 174 (213)
T ss_pred HHHHHHHhCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHH--HHHHHHHHHhcCCCCeEEE
Confidence 3445556666 55554433 688999999999999999998654333322 2334455544432 45544
No 235
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=51.74 E-value=34 Score=22.66 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=25.8
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCE
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
..+.|.+.++++++|+|++|....+. .++-.|..+..+|+
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g~-------~la~rlAa~L~~~~ 110 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFGK-------DLAPRVAAKLDVGL 110 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcccc-------chHHHHHHHhCCCc
Confidence 45667788888889999999765432 34444554444443
No 236
>PRK12361 hypothetical protein; Provisional
Probab=51.53 E-value=1.3e+02 Score=24.33 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
..+++.+.+.+. .+++...... ..+..+.+.+.+.++|+||+... .+.+ ..+++.+. ...+|+-++|-.
T Consensus 261 ~~~~i~~~L~~~---~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GG-DGTl-----~ev~~~l~-~~~~~lgiiP~G 330 (547)
T PRK12361 261 YGEQIQRELKAY---FDLTVKLTTPEISAEALAKQARKAGADIVIACGG-DGTV-----TEVASELV-NTDITLGIIPLG 330 (547)
T ss_pred HHHHHHHHHhcC---CceEEEECCCCccHHHHHHHHHhcCCCEEEEECC-CcHH-----HHHHHHHh-cCCCCEEEecCC
Confidence 344444444432 3344333332 45677777676667888776432 2322 33444554 356889998865
Q ss_pred C
Q 031383 158 E 158 (160)
Q Consensus 158 ~ 158 (160)
.
T Consensus 331 T 331 (547)
T PRK12361 331 T 331 (547)
T ss_pred c
Confidence 4
No 237
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=51.47 E-value=87 Score=22.38 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCcceEEEEEecC--ChhhHHH--HHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCG--DAKDVIC--GTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~--~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
.+++...++..| .++......| ..-.-+. +..+..++|.+|+-..-.+.+ . .-+.--..|||+-+|
T Consensus 133 AeEa~~tae~lG--~ev~~~~DvGVAGiHRLl~~l~r~~~~~~~~lIVvAGMEGaL-----P---svvagLvD~PVIavP 202 (254)
T COG1691 133 AEEAAVTAEELG--VEVQKVYDVGVAGIHRLLSALKRLKIEDADVLIVVAGMEGAL-----P---SVVAGLVDVPVIAVP 202 (254)
T ss_pred HHHHHHHHHHhC--ceEEEEEeeccchHHhhhhHHHHHHhhCCCeEEEEcccccch-----H---HHHHhccCCCeEecc
Confidence 345556666778 7777777776 4444444 556667888888864333322 2 223444579999988
Q ss_pred CC
Q 031383 156 HP 157 (160)
Q Consensus 156 ~~ 157 (160)
..
T Consensus 203 Ts 204 (254)
T COG1691 203 TS 204 (254)
T ss_pred cc
Confidence 53
No 238
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=51.17 E-value=98 Score=22.88 Aligned_cols=63 Identities=22% Similarity=0.177 Sum_probs=41.0
Q ss_pred ceEEEEEecCC--hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 94 IHVKRVVGCGD--AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 94 ~~~~~~~~~g~--~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+++-..+...+ .+-++.+++++.++|-+++-..-.....+--+=..-..+...++.|+++..-
T Consensus 74 vpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~ 138 (299)
T COG0329 74 VPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNI 138 (299)
T ss_pred CcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44444444433 4446779999999999999765433333222223457799999999999853
No 239
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=51.11 E-value=44 Score=22.29 Aligned_cols=69 Identities=6% Similarity=-0.071 Sum_probs=30.6
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcc-cceee---ccchhHHHhhcCCCCEEEecCC
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGF-IKRAL---LGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~-~~~~~---~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+++.+ ++.-.-....+..+....+++++++.++-++...... +.... .-...+.|++..+-||||.=..
T Consensus 28 L~~L~--LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~ 100 (164)
T PF03162_consen 28 LERLG--LKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNH 100 (164)
T ss_dssp HHHHT---SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SS
T ss_pred HHHCC--CceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 34455 4444444444566677779999999999998664433 11111 1123345677788999997443
No 240
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=51.05 E-value=21 Score=25.21 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=27.0
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.++.+..++.++|.|++|+-+.+.+ +++|-....+||+
T Consensus 164 ~~~~~a~~edgAeaIiLGCAGms~l--------a~~Lq~~~gvPVI 201 (230)
T COG4126 164 IEAAEALKEDGAEAIILGCAGMSDL--------ADQLQKAFGVPVI 201 (230)
T ss_pred HHHHHHhhhcCCCEEEEcCccHHHH--------HHHHHHHhCCCcc
Confidence 3455667788999999999887654 4556555666663
No 241
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=51.03 E-value=49 Score=21.60 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=7.1
Q ss_pred HHhhcCCCCEEEe
Q 031383 142 YCAKHVKCPVVIV 154 (160)
Q Consensus 142 ~ll~~~~~pVlvv 154 (160)
.+++...+||++|
T Consensus 123 dl~~~~~~~vilV 135 (166)
T TIGR00347 123 DLIKLLQLPVILV 135 (166)
T ss_pred HHHHHhCCCEEEE
Confidence 4555555555555
No 242
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=50.88 E-value=1.1e+02 Score=23.54 Aligned_cols=36 Identities=6% Similarity=0.027 Sum_probs=28.5
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
.-.++++.++|.-+|..++.++.+. + .++.++|+..
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~----G--~~v~av~~~~ 210 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKR----G--VEIEAVHFHS 210 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHC----C--CEEEEEEEeC
Confidence 4478999999998898888777552 5 6899999854
No 243
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=50.81 E-value=38 Score=23.97 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=31.6
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
..++++.+.+.+.|.+++|.+..-..+. ...+... +++...||++.|...
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~--~~~~v~~-ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEK--TDTLIEA-LRRYGLPIILFPSNP 65 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHH--HHHHHHH-HhccCCCEEEeCCCc
Confidence 4567777777899999999664222221 1223333 444559999988654
No 244
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=50.80 E-value=38 Score=24.74 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=30.2
Q ss_pred HHHHHHhcCCcceEEEEEecC----ChhhHHHHHhhhhCCCEEEEeec
Q 031383 83 AEAVYRNFQNNIHVKRVVGCG----DAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g----~~~~~i~~~a~~~~~dllvig~~ 126 (160)
++...+.++ +++....... ...+.+++..+++++|+||+.+.
T Consensus 130 l~~~v~~~~--IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARY 175 (287)
T COG0788 130 LRPLVERFD--IPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARY 175 (287)
T ss_pred HHHHHHHcC--CCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhh
Confidence 445556677 8877665543 34557889999999999999754
No 245
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.68 E-value=1.2e+02 Score=23.85 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=65.9
Q ss_pred EEEEecCC-hHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 8 VVVAVDES-EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 8 Ilv~~d~s-~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
||+.-|.. --|-.+++.+..+|++ . .+|||..+.+. .+++-.
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~-----~-~vLYVsGEES~-------------------------------~QiklR 138 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKR-----G-KVLYVSGEESL-------------------------------QQIKLR 138 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhc-----C-cEEEEeCCcCH-------------------------------HHHHHH
Confidence 34443333 2366788999999875 3 68899866543 244444
Q ss_pred HHhcCCcceEE-EEEecCChhhHHHHHhhhhCCCEEEEeecCCcccc--eeeccchhH---------HHhhcCCCCEEEe
Q 031383 87 YRNFQNNIHVK-RVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIK--RALLGSVSD---------YCAKHVKCPVVIV 154 (160)
Q Consensus 87 ~~~~~~~~~~~-~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~--~~~~gs~~~---------~ll~~~~~pVlvv 154 (160)
+.+.+ +... ..+..-.-.+.|++.+++.++|++|+-+=..-... ..-.||+++ ++.+..++++++|
T Consensus 139 A~RL~--~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiV 216 (456)
T COG1066 139 ADRLG--LPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIV 216 (456)
T ss_pred HHHhC--CCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 55555 4333 34444577889999999999999999753211100 112344332 3555666888887
Q ss_pred c
Q 031383 155 K 155 (160)
Q Consensus 155 ~ 155 (160)
-
T Consensus 217 G 217 (456)
T COG1066 217 G 217 (456)
T ss_pred E
Confidence 3
No 246
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=50.65 E-value=46 Score=23.50 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=33.0
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
...+.+.+.+.++|.+++......+-.....-.....+...+++||+..-
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~G 200 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASG 200 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeC
Confidence 34566777788999888765443322222344567888888899998764
No 247
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=50.49 E-value=55 Score=19.75 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhcCCcceEE-EEEe----------cC-ChhhHHHHHhhhhCCCEEEEee
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVK-RVVG----------CG-DAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~g-~~~~~i~~~a~~~~~dllvig~ 125 (160)
..+..+++++.++...| ..+. ..++ .| .-.++|.+.++++++|+||...
T Consensus 5 ~~~~~l~El~~L~~t~g--~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~ 65 (95)
T PF13167_consen 5 DFEESLEELEELAETAG--YEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDN 65 (95)
T ss_pred cHHHHHHHHHHHHHHCC--CeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECC
Confidence 34567778888888887 3332 1222 14 5677899999999999999974
No 248
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=50.44 E-value=56 Score=19.90 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeec
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~ 126 (160)
..+...+++.| .++. .... ...+.+.+.+.+.++|+|.++..
T Consensus 18 ~~la~~l~~~G--~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 18 LYLAAYLRKAG--HEVD--ILDANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHHHTT--BEEE--EEESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHCC--CeEE--EECCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 34555666677 4433 3333 34588999999999999999874
No 249
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=50.35 E-value=96 Score=22.50 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=11.3
Q ss_pred ceEEEEEecCChHHH
Q 031383 5 ERRVVVAVDESEESM 19 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~ 19 (160)
.++|||.+.+++...
T Consensus 170 ~~~iLi~~GG~d~~~ 184 (279)
T TIGR03590 170 LRRVLVSFGGADPDN 184 (279)
T ss_pred cCeEEEEeCCcCCcC
Confidence 367999998887654
No 250
>PRK00211 sulfur relay protein TusC; Validated
Probab=50.05 E-value=62 Score=20.26 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=25.5
Q ss_pred ceEEEEEecCCh----HHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 5 ERRVVVAVDESE----ESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 5 ~~~Ilv~~d~s~----~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
|++|++.+..+| .+..+++.|+..+.... ++.++..-+.
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~~---~v~vff~~Dg 43 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAFTE---DIGVFFIDDG 43 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcccC---CeeEEEEhhh
Confidence 467888887654 45566766666655443 7777776654
No 251
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=50.00 E-value=47 Score=18.80 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=25.5
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEE
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVL 40 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~ 40 (160)
.++|++.+|..+....+.....+.....+ .++.+
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g--~~~~~ 76 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLG--LNVRV 76 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCC--CeEEE
Confidence 37899999999888888877777766655 35443
No 252
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=49.94 E-value=1.1e+02 Score=23.15 Aligned_cols=28 Identities=0% Similarity=-0.031 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEE
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v 43 (160)
...+.+.+++|+++|++.+. .+|+++|=
T Consensus 146 r~~~eRi~r~Af~~A~~r~~-~~Vt~v~K 173 (334)
T PRK08997 146 RKGAERIVRFAYELARKEGR-KKVTAVHK 173 (334)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 46788999999999998853 36777763
No 253
>PRK14974 cell division protein FtsY; Provisional
Probab=49.63 E-value=1.1e+02 Score=23.10 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhh---HHHHHhhhhCCCEEEEeecCCcccce
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKD---VICGTVEKLEADTLVMGSHGYGFIKR 133 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~---~i~~~a~~~~~dllvig~~~~~~~~~ 133 (160)
++.......+ +++......+++.. ..+++++..++|+|++-+.++.....
T Consensus 186 qL~~~a~~lg--v~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~ 238 (336)
T PRK14974 186 QLEEHAERLG--VKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDA 238 (336)
T ss_pred HHHHHHHHcC--CceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcH
Confidence 3344455556 55544333335544 33455666789999998877765433
No 254
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=49.24 E-value=75 Score=24.10 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=37.2
Q ss_pred HhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC--CcccceeeccchhHH-HhhcCCCCEEEec
Q 031383 88 RNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG--YGFIKRALLGSVSDY-CAKHVKCPVVIVK 155 (160)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~--~~~~~~~~~gs~~~~-ll~~~~~pVlvv~ 155 (160)
.+.| +++..... ..+...+.+.++|.+++|... .+++.. -.|+..-. +.++-.+|++++-
T Consensus 204 ~~~G--I~vtlI~D-----sa~~~~M~~~~Vd~VivGAd~I~anGv~N-KiGT~~lA~~Ak~~~vPfyV~a 266 (339)
T PRK06036 204 MQDN--IPVTLITD-----SMAGIVMRQGMVDKVIVGADRITRDAVFN-KIGTYTHSVLAKEHEIPFYVAA 266 (339)
T ss_pred HHcC--CCEEEEeh-----hHHHHHhccCCCCEEEECccchhhcCeeh-hhhHHHHHHHHHHhCCCEEEEe
Confidence 3466 77765544 234455655579999999764 233332 34655434 5566679999974
No 255
>PRK08194 tartrate dehydrogenase; Provisional
Probab=49.18 E-value=95 Score=23.69 Aligned_cols=28 Identities=4% Similarity=0.011 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
...+.+.+++|+++|++.+ .+|+++|=.
T Consensus 160 r~~~eRI~r~Af~~A~~r~--~~Vt~v~Ka 187 (352)
T PRK08194 160 RKGTERAMRYAFELAAKRR--KHVTSATKS 187 (352)
T ss_pred HHHHHHHHHHHHHHHHHcC--CcEEEEeCc
Confidence 3568899999999998875 578887743
No 256
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=48.93 E-value=96 Score=22.13 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCccc
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI 131 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~ 131 (160)
+..-+.+..++..+.+.| +.++.+..+= +..+.|..++....+|||=+=+...+++
T Consensus 119 ~~QI~~l~~Lr~~L~~~g--~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi 175 (248)
T PF07476_consen 119 EAQIEALAELREELDRRG--INVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGI 175 (248)
T ss_dssp HHHHHHHHHHHHHHHHCT----EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSST
T ss_pred HHHHHHHHHHHHHHHhcC--CCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccch
Confidence 444456777888888899 8888887764 9999999999999999999977776654
No 257
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=48.91 E-value=71 Score=20.59 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh--hCCCEEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dllvig 124 (160)
.+...+++.| .++......+|..+.|.+..++ .++|+||+.
T Consensus 31 ~l~~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 31 LLAALLEEAG--FNVSRLGIVPDDPEEIREILRKAVDEADVVLTT 73 (144)
T ss_pred HHHHHHHHCC--CeEEEEeecCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 3445566677 6666655555555555544332 279999985
No 258
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=48.68 E-value=86 Score=21.50 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=26.2
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
++++.++|.-+|..++.++.+. + -++..+++..+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G--~~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----G--HEVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----C--CEEEEEEEEec
Confidence 4789999999999999988883 4 36777776643
No 259
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=48.40 E-value=35 Score=19.43 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=21.5
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPD 33 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~ 33 (160)
.++|++++|+......+..+..+.....+
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~g 74 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLG 74 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG---
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhc
Confidence 47899999999988888888888655444
No 260
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=48.30 E-value=96 Score=23.78 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhHH-HhhcCCCCEEEecC
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSDY-CAKHVKCPVVIVKH 156 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~~-ll~~~~~pVlvv~~ 156 (160)
+.+.| +++..... +. +........+|.+++|... .+++.. -.|+..-. +.++-.+||+++-+
T Consensus 223 L~~~G--IpvtlI~D--sa---~~~~m~~~~Vd~VivGAD~I~~NG~v~N-KiGTy~lA~~Ak~~~vPfyV~ap 288 (363)
T PRK05772 223 LMEEG--IKVTLITD--TA---VGLVMYKDMVNNVMVGADRILRDGHVFN-KIGTFKEAVIAHELGIPFYALAP 288 (363)
T ss_pred HHHCC--CCEEEEeh--hH---HHHHHhhcCCCEEEECccEEecCCCEee-hhhhHHHHHHHHHhCCCEEEEcc
Confidence 44467 77665543 22 2233334579999999764 333333 34665544 55677799999843
No 261
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=48.16 E-value=64 Score=22.33 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=27.2
Q ss_pred CCCCceEEEEEecCChHHHH-HHHHHHHhcCCCCCCCeEEEEE
Q 031383 1 MNTNERRVVVAVDESEESMH-ALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~-al~~a~~~a~~~~~~a~l~~l~ 42 (160)
|....++|++++.|+-.+-. +++.+-.+.+ .+ .+|.++-
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k-~G--~~V~vv~ 40 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVD-EG--AEVTPIV 40 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHh-Cc--CEEEEEE
Confidence 44456899999999988887 5777766643 35 5666554
No 262
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=48.04 E-value=56 Score=19.18 Aligned_cols=68 Identities=9% Similarity=0.067 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
+.+...++..+ ++..... .-.++.++..+.+.+|++++...-.. ... -...+.|-... .+|++++-..
T Consensus 12 ~~l~~~l~~~~----~~~v~~~-~~~~~~~~~~~~~~~d~iiid~~~~~-~~~---~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 12 ELLEKLLERAG----YEEVTTA-SSGEEALELLKKHPPDLIIIDLELPD-GDG---LELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHHTT----EEEEEEE-SSHHHHHHHHHHSTESEEEEESSSSS-SBH---HHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHhCC----CCEEEEE-CCHHHHHHHhcccCceEEEEEeeecc-ccc---cccccccccccccccEEEecCC
Confidence 34444455555 4222232 44556667778889999999954333 111 23455665555 4888888644
No 263
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=47.80 E-value=21 Score=20.52 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCccc
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFI 131 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~ 131 (160)
+++...+++.. -.+......|+.+..=.. ...++|++|++.......
T Consensus 5 ~~i~~~l~~~~--~~i~~i~LfGS~arg~~~--~~SDiDl~vi~~~~~~~~ 51 (93)
T cd05403 5 EEILEILRELL--GGVEKVYLFGSYARGDAR--PDSDIDLLVIFDDPLDPL 51 (93)
T ss_pred HHHHHHHHHHh--CCccEEEEEeeeecCCCC--CCCCeeEEEEeCCCCCHH
Confidence 34444444443 147778888877775554 345999999997665443
No 264
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=47.70 E-value=1.3e+02 Score=23.32 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCc
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
+.+.+.+.+-+.+.| +.+...-......++|.+.+. +++-+|+|+..-+
T Consensus 261 ~~ma~aiaegl~~~g--v~v~~~~~~~~~~~eI~~~i~--~a~~~vvGsPT~~ 309 (388)
T COG0426 261 EKMAQAIAEGLMKEG--VDVEVINLEDADPSEIVEEIL--DAKGLVVGSPTIN 309 (388)
T ss_pred HHHHHHHHHHhhhcC--CceEEEEcccCCHHHHHHHHh--hcceEEEecCccc
Confidence 445566666777788 888877777778889999888 8999999987543
No 265
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=47.64 E-value=52 Score=21.97 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=28.4
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.....+++.+.+.++|+|++|-.. ..-+ . .+.+..++.+.+|++.
T Consensus 86 ~~~~~i~~~I~~~~pdiv~vglG~-PkQE-~----~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 86 EEEEEIIERINASGADILFVGLGA-PKQE-L----WIARHKDRLPVPVAIG 130 (171)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCC-CHHH-H----HHHHHHHHCCCCEEEE
Confidence 344568999999999999998432 1111 1 2345556666666653
No 266
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=47.46 E-value=91 Score=21.40 Aligned_cols=58 Identities=10% Similarity=-0.039 Sum_probs=37.8
Q ss_pred HHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc
Q 031383 83 AEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH 146 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~ 146 (160)
+...++..| ++...... -+.+.+++.+++.++|+|.+...-....... ....+.+-+.
T Consensus 104 v~~~l~~~G----~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~--~~~i~~l~~~ 162 (197)
T TIGR02370 104 VVTMLRANG----FDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQ--KDINDKLKEE 162 (197)
T ss_pred HHHHHHhCC----cEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHH--HHHHHHHHHc
Confidence 344556667 55554433 6889999999999999999986544444332 3444444444
No 267
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=47.29 E-value=1.3e+02 Score=23.03 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=37.7
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
..+.| +++-+.+..-...+.+.+ -+|++-+|++..... .-..++..+++||.+=..
T Consensus 133 ~~e~G--lpvatE~ld~~~~~y~~d-----lvs~~~IGARt~esq-------~hr~~asg~~~PVg~Kng 188 (349)
T PRK09261 133 INELG--LPAATEFLDPITPQYIAD-----LISWGAIGARTTESQ-------VHRELASGLSCPVGFKNG 188 (349)
T ss_pred HHHhC--CCeEEEecccccHHHHHh-----hcceeeeccchhcCH-------HHHHHhcCCCCeeEecCC
Confidence 45677 888888777655444433 378899998754432 335788888999987443
No 268
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=47.16 E-value=64 Score=19.56 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=38.2
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
+++.| +.++...........|.+..++.++|+||-...+.. ..-.|-..++..-...+|++.
T Consensus 39 l~~~g--i~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~---~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 39 LQEAG--IPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKR---AIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHcC--CeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCc---cCccHHHHHHHHHHhCCCEEe
Confidence 44456 766654333234467889999999999998644322 112344555666666788764
No 269
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=46.50 E-value=2e+02 Score=25.00 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=55.5
Q ss_pred eEEEEEecCChHHHHHHHHH-HHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWC-LNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a-~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
++|+|.+.....-..++... +..+.+.. .-+++.+++.+ ...++.+++++
T Consensus 86 ~~vvVtTgTgSGKTe~FllPIld~~l~~~---~a~AL~lYPtn--------------------------ALa~DQ~~rl~ 136 (851)
T COG1205 86 RNVVVTTGTGSGKTESFLLPILDHLLRDP---SARALLLYPTN--------------------------ALANDQAERLR 136 (851)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhhCc---CccEEEEechh--------------------------hhHhhHHHHHH
Confidence 56777764433322333322 22222222 33888888877 55666777777
Q ss_pred HHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
+...+.+ ..+....-.|+....--+...+..+|+|+..
T Consensus 137 ~~~~~~~--~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTN 174 (851)
T COG1205 137 ELISDLP--GKVTFGRYTGDTPPEERRAIIRNPPDILLTN 174 (851)
T ss_pred HHHHhCC--CcceeeeecCCCChHHHHHHHhCCCCEEEeC
Confidence 7777777 4677777778777776666666789988875
No 270
>PRK08576 hypothetical protein; Provisional
Probab=46.35 E-value=1.5e+02 Score=23.48 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=25.7
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
+|+|+++|..+|..++..+.+.. + .+.++++...
T Consensus 236 rVvVafSGGKDStvLL~La~k~~---~---~V~aV~iDTG 269 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAF---G---DVTAVYVDTG 269 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhC---C---CCEEEEeCCC
Confidence 89999999999998887776652 2 4677776543
No 271
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=46.28 E-value=1.2e+02 Score=22.40 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=41.7
Q ss_pred CChhhHHHHHhhhhCCCEEEEeecCCcccce-eeccchhHHHhhcCCCCEEEecCCC
Q 031383 103 GDAKDVICGTVEKLEADTLVMGSHGYGFIKR-ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 103 g~~~~~i~~~a~~~~~dllvig~~~~~~~~~-~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
-....++++.|++.+..+|+.-+.+.-.... -.+......+.+++++||.+-=++.
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg 84 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHH 84 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3788999999999999999987654332222 1356678889999999998764443
No 272
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=45.71 E-value=1.1e+02 Score=21.70 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=51.8
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
++++.++|..+|.-|+.++.+- .. .+.++...+....... .+.. -.+.+...
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~---~~---V~~L~~~~~~~~~s~~-----~h~~-----------------~~~~~~~q 53 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE---HE---VISLVGVFSENEESYM-----FHSP-----------------NLHLTDLV 53 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc---Ce---eEEEEEEcCCCCCccc-----cccC-----------------CHHHHHHH
Confidence 5888999999999999988874 23 4555666554321100 0000 11223334
Q ss_pred HHhcCCcceEEEEEecC---ChhhHHHHHhhhhCCCEEEEee
Q 031383 87 YRNFQNNIHVKRVVGCG---DAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g---~~~~~i~~~a~~~~~dllvig~ 125 (160)
++..| +++......+ +..+.+.+..++.+++-+|.|.
T Consensus 54 A~alg--iPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~Gd 93 (222)
T TIGR00289 54 AEAVG--IPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGA 93 (222)
T ss_pred HHHcC--CCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECc
Confidence 44556 6655444333 3555666666777888888884
No 273
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=45.46 E-value=1.5e+02 Score=23.37 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=18.5
Q ss_pred EEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEE
Q 031383 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 9 lv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v 43 (160)
++...|+--+..+...|..+... + -.+.++..
T Consensus 100 lvG~~GsGKTTtaakLA~~L~~~-g--~kV~lV~~ 131 (437)
T PRK00771 100 LVGLQGSGKTTTAAKLARYFKKK-G--LKVGLVAA 131 (437)
T ss_pred EECCCCCcHHHHHHHHHHHHHHc-C--CeEEEecC
Confidence 34456665566677777766543 4 35555543
No 274
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=45.27 E-value=1e+02 Score=21.45 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcce
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
.....+.++.+.++...+ .+|.++-.-... .+...+.+...+++.| ..
T Consensus 12 ~~~~~i~~~~~~~ag~~~--~~i~~iptA~~~----------------------------~~~~~~~~~~~~~~lG--~~ 59 (217)
T cd03145 12 YDNRAILQRFVARAGGAG--ARIVVIPAASEE----------------------------PAEVGEEYRDVFERLG--AR 59 (217)
T ss_pred cCHHHHHHHHHHHcCCCC--CcEEEEeCCCcC----------------------------hhHHHHHHHHHHHHcC--Cc
Confidence 366778888999987544 466444322211 0112333344444456 43
Q ss_pred -EEEEEecC---ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc
Q 031383 96 -VKRVVGCG---DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH 146 (160)
Q Consensus 96 -~~~~~~~g---~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~ 146 (160)
+....... .....+.+... ++|.|+++.-....+-+.+.++-..++++.
T Consensus 60 ~v~~~~~~~~~~a~~~~~~~~l~--~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~ 112 (217)
T cd03145 60 EVEVLVIDSREAANDPEVVARLR--DADGIFFTGGDQLRITSALGGTPLLDALRK 112 (217)
T ss_pred eeEEeccCChHHcCCHHHHHHHH--hCCEEEEeCCcHHHHHHHHcCChHHHHHHH
Confidence 33332221 13345566666 899999986655555555555555554443
No 275
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=45.26 E-value=56 Score=20.78 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=33.7
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
...+|+|.-|....|....+.++.-....+ .++..+...+.+
T Consensus 39 ~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G--~~V~~~g~~~tP 80 (137)
T PF02878_consen 39 NGSRVVVGRDTRPSSPMLAKALAAGLRANG--VDVIDIGLVPTP 80 (137)
T ss_dssp TSSEEEEEE-SSTTHHHHHHHHHHHHHHTT--EEEEEEEEB-HH
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhhcc--cccccccccCcH
Confidence 357899999999999999999999988888 788888855443
No 276
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=45.23 E-value=1.1e+02 Score=21.68 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=50.7
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
++++.+.+..+|.-|+.+|.+. .. -+.++++.+.......+ +..+ .+.+...
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~---~~---v~~L~t~~~~~~~s~~~-----H~~~-----------------~~~~~~q 53 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE---HE---VISLVNIMPENEESYMF-----HGVN-----------------AHLTDLQ 53 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh---Ce---eEEEEEEecCCCCcccc-----cccC-----------------HHHHHHH
Confidence 3678899999999999998887 23 56677777654321111 0000 1222233
Q ss_pred HHhcCCcceEEEEEecC---ChhhHHHHHhhhhCCCEEEEee
Q 031383 87 YRNFQNNIHVKRVVGCG---DAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g---~~~~~i~~~a~~~~~dllvig~ 125 (160)
++..| ++.......+ +-.+.+.+..++.+++.+|-|.
T Consensus 54 A~alg--ipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~Gd 93 (223)
T TIGR00290 54 AESIG--IPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGA 93 (223)
T ss_pred HHHcC--CCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECC
Confidence 33445 5543322222 3445555666666888888884
No 277
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.83 E-value=1.1e+02 Score=21.58 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
....+...+.+.+++.| ..+......++.. ...++.....++|-||+........ ....+ .+.....||+
T Consensus 13 ~~~~~~~~i~~~~~~~g--~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~-----~~~i~-~~~~~~iPvV 84 (282)
T cd06318 13 FFAALTEAAKAHAKALG--YELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGL-----VPAVA-AAKAAGVPVV 84 (282)
T ss_pred HHHHHHHHHHHHHHHcC--CEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccch-----HHHHH-HHHHCCCCEE
Confidence 34456666677777777 5554433333443 2456667778999999964321110 11122 3345678998
Q ss_pred EecC
Q 031383 153 IVKH 156 (160)
Q Consensus 153 vv~~ 156 (160)
++-.
T Consensus 85 ~~~~ 88 (282)
T cd06318 85 VVDS 88 (282)
T ss_pred EecC
Confidence 8843
No 278
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=44.64 E-value=43 Score=23.24 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhh---CCCEEEEeecC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKL---EADTLVMGSHG 127 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~---~~dllvig~~~ 127 (160)
.+.++..+++.| ..-...+..|+..+.|-+...+. .+|+|++-+..
T Consensus 83 ~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 83 AEIARENFRKAG--LDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK 131 (205)
T ss_dssp HHHHHHHHHHTT--GGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG
T ss_pred HHHHHHHHHhcC--CCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc
Confidence 344555556666 54445566688888877777654 69999998654
No 279
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=44.59 E-value=1.2e+02 Score=23.11 Aligned_cols=28 Identities=4% Similarity=-0.040 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
...+.+.+++|+++|++.. .+|+++|=.
T Consensus 163 r~~~eRi~r~Af~~A~~rr--~kVt~v~Ka 190 (352)
T TIGR02089 163 RKGVERIMRFAFELAQKRR--KHLTSATKS 190 (352)
T ss_pred HHHHHHHHHHHHHHHHHcC--CCEEEEeCC
Confidence 3678899999999998875 578888743
No 280
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=44.53 E-value=1.2e+02 Score=22.09 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHH---HHhhhhCCCEEEEe
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVIC---GTVEKLEADTLVMG 124 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~---~~a~~~~~dllvig 124 (160)
...+.+.+...| +.+..+...||..+.|. +.+.++ +|+||..
T Consensus 23 a~~la~~L~~~G--~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~t 67 (255)
T COG1058 23 AAFLADELTELG--VDLARITTVGDNPDRIVEALREASER-ADVVITT 67 (255)
T ss_pred HHHHHHHHHhcC--ceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEEC
Confidence 345566777788 99999988897666665 445555 9999985
No 281
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.49 E-value=1.5e+02 Score=23.22 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCC---hhhHHHHHhhhhCCCEEEEeecCCcccceeecc
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGD---AKDVICGTVEKLEADTLVMGSHGYGFIKRALLG 137 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~---~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~g 137 (160)
+++..+.+.+ +++-....+.+ .+.+=++..+..++|+||+-+.+|...+.-+|.
T Consensus 147 QLkqnA~k~~--iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfe 203 (483)
T KOG0780|consen 147 QLKQNATKAR--VPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFE 203 (483)
T ss_pred HHHHHhHhhC--CeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHH
Confidence 3334444455 55554433334 344455667778999999998887776665553
No 282
>PHA02031 putative DnaG-like primase
Probab=44.48 E-value=1.2e+02 Score=22.10 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=30.3
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
++|++++|+......|...|++++...+ ..+.++.+-
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l~~~~--~~v~vv~lP 243 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRLRPLL--IEGQVIITP 243 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHcC--CceEEEECC
Confidence 7899999999999999999999987766 466655553
No 283
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=44.41 E-value=93 Score=25.41 Aligned_cols=84 Identities=19% Similarity=0.170 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCE
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPV 151 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pV 151 (160)
+..+.+.+.+.-++.+.+ +.++.+...+ +.+.+|.+...-.++|-||.-+. .+-+...+.|-.-+.=.+.+ +.||
T Consensus 194 ka~~~F~~~v~Pll~~A~--i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsG-DGl~hEVlNGLl~R~D~~~~~klPi 270 (579)
T KOG1116|consen 194 KAKKLFKNHVEPLLSEAG--ISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSG-DGLLHEVLNGLLERPDWEAAVKLPI 270 (579)
T ss_pred cHHHHHHhhhhhhhhhcC--ceEEEEEecCccHHHHHHHhhhccccceEEEecC-CcCHHHhhhccccccchhhHhcCce
Confidence 344556677777888888 9999988887 89999999988889998887533 23222222111111002222 4788
Q ss_pred EEecCCCCC
Q 031383 152 VIVKHPEEN 160 (160)
Q Consensus 152 lvv~~~~~~ 160 (160)
-+||-...|
T Consensus 271 giiP~GSGN 279 (579)
T KOG1116|consen 271 GIIPCGSGN 279 (579)
T ss_pred eEeecCCcc
Confidence 888865543
No 284
>PRK10481 hypothetical protein; Provisional
Probab=44.11 E-value=1.1e+02 Score=21.61 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=30.4
Q ss_pred hhhHHHHHhh---hhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 105 AKDVICGTVE---KLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 105 ~~~~i~~~a~---~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..+.+.+.++ +.++|+||+++-+.+. ...+.+-+.+..||+.
T Consensus 167 ~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-------~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 167 SEEELIDAGKELLDQGADVIVLDCLGYHQ-------RHRDLLQKALDVPVLL 211 (224)
T ss_pred CHHHHHHHHHHhhcCCCCEEEEeCCCcCH-------HHHHHHHHHHCcCEEc
Confidence 3345666666 5689999999988763 2346777888899875
No 285
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=43.99 E-value=34 Score=22.23 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=24.9
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..+.+.++++++++|.|++.-..... .. .. -.-..+++.+|.|.++|
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~~~-~~--i~-~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWSEE-EQ--IK-RIIEELENHGVRVRVVP 175 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS-H-HH--HH-HHHHHHHTTT-EEEE--
T ss_pred CHHHHHHHHHhCCCCEEEEEcCccCH-HH--HH-HHHHHHHhCCCEEEEeC
Confidence 34789999999999999998543221 11 11 12345666779998887
No 286
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=43.74 E-value=1.4e+02 Score=22.38 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=36.8
Q ss_pred ceEEEEEecC-C----hhhHHHHHhhhhCCCEEEEeecCCccc-ceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCG-D----AKDVICGTVEKLEADTLVMGSHGYGFI-KRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g-~----~~~~i~~~a~~~~~dllvig~~~~~~~-~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++...++.| + ....+.+.+++.++|.|.+..+.+... .+...-..+.++.+++++||+..-
T Consensus 134 ~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nG 201 (321)
T PRK10415 134 VPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANG 201 (321)
T ss_pred CceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeC
Confidence 4455555444 2 234677777888999998865432221 111122456677778889988753
No 287
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=43.71 E-value=1.4e+02 Score=22.57 Aligned_cols=29 Identities=3% Similarity=-0.024 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHhcCCC----CCCCeEEEEEEe
Q 031383 15 SEESMHALSWCLNNLFSP----DTNNTLVLLYVK 44 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~----~~~a~l~~l~v~ 44 (160)
...+.+.+++|+++|++. +. .+|+++|=.
T Consensus 139 r~~~~Ri~r~Af~~A~~r~~~~~~-k~Vt~v~Ka 171 (330)
T PRK14025 139 RKASERIFRFAFEMAKRRKKMGKE-GKVTCAHKA 171 (330)
T ss_pred HHHHHHHHHHHHHHHHhccccCCC-CeEEEEECC
Confidence 466889999999999887 32 367777633
No 288
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=43.44 E-value=1.7e+02 Score=23.27 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=19.3
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLF 30 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~ 30 (160)
..++|+++|..+|..++..+..-..
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~~Al~ 38 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIWNALA 38 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHH
Confidence 3468999999999988887776543
No 289
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=43.30 E-value=47 Score=24.93 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=32.6
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC-Ccc-cceeeccchhHHHhhcCCCCEEEecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG-YGF-IKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~-~~~-~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+..+.++..+ ++|+||+|... .+. ...+++..+.+.|. ++.-|++.+.+
T Consensus 178 ~a~~eaveAI~--~AD~IviGPgSl~TSIlP~Lllp~I~eaLr-~~~ap~i~v~n 229 (323)
T COG0391 178 SAAPEAVEAIK--EADLIVIGPGSLFTSILPILLLPGIAEALR-ETVAPIVYVCN 229 (323)
T ss_pred CCCHHHHHHHH--hCCEEEEcCCccHhhhchhhchhHHHHHHH-hCCCCEEEecc
Confidence 56667788888 99999999543 232 23344555555444 48888887754
No 290
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=43.16 E-value=42 Score=26.04 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=6.6
Q ss_pred HHHhhcCCCCEE
Q 031383 141 DYCAKHVKCPVV 152 (160)
Q Consensus 141 ~~ll~~~~~pVl 152 (160)
..++....+.|+
T Consensus 94 ~~~l~~~gi~vl 105 (407)
T PRK10966 94 RDLLAFLNTTVI 105 (407)
T ss_pred HHHHHHCCcEEE
Confidence 456666555444
No 291
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=42.74 E-value=91 Score=20.06 Aligned_cols=43 Identities=7% Similarity=-0.020 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
-+...++..| ++...... .+.+.+.+.+.++++|+|.++....
T Consensus 22 iv~~~lr~~G----~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~ 65 (137)
T PRK02261 22 ILDRALTEAG----FEVINLGVMTSQEEFIDAAIETDADAILVSSLYG 65 (137)
T ss_pred HHHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccc
Confidence 3445666777 66655543 6789999999999999999986543
No 292
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.71 E-value=1.2e+02 Score=21.32 Aligned_cols=71 Identities=13% Similarity=0.051 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+.+.+...+++.| ..+......++.. ...++.....++|-+|++........ .. -..+.+.++||+++
T Consensus 15 ~~~~~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~-----~~-l~~~~~~~ipvV~~ 86 (277)
T cd06319 15 QIMGRGVKSKAKALG--YDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAV-----TL-LKLAAQAKIPVVIA 86 (277)
T ss_pred HHHHHHHHHHHHhcC--CeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhH-----HH-HHHHHHCCCCEEEE
Confidence 345666666666677 5554432233433 23344444568999988643221111 11 23455678999887
Q ss_pred c
Q 031383 155 K 155 (160)
Q Consensus 155 ~ 155 (160)
-
T Consensus 87 ~ 87 (277)
T cd06319 87 D 87 (277)
T ss_pred e
Confidence 4
No 293
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=42.65 E-value=1.2e+02 Score=21.36 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
..++++...+.+ ..+...+..| ...+=+..+.+.++|.+|+|+.
T Consensus 154 I~~l~~~~~~~~--~~~~I~vdGG-I~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 154 LRAVRKMIDESG--RDIRLEIDGG-VKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHhcC--CCeeEEEECC-CCHHHHHHHHHcCCCEEEEeHH
Confidence 344444444445 4555556544 4444455555679999999954
No 294
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=42.44 E-value=1.5e+02 Score=22.37 Aligned_cols=69 Identities=25% Similarity=0.209 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCC----hhhHHHHHhhhhCCCEEE-EeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGD----AKDVICGTVEKLEADTLV-MGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~i~~~a~~~~~dllv-ig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+++.+.+++.+ +.+...+..|+ ..+.+.+.+++.++|.|| +|...-. .++..+......|++.|
T Consensus 38 ~~~v~~~l~~~~--i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~--------D~aK~ia~~~~~p~i~V 107 (349)
T cd08550 38 RPRFEAALAKSI--IVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTL--------DTAKAVADRLDKPIVIV 107 (349)
T ss_pred HHHHHHHHHhcC--CeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHH--------HHHHHHHHHcCCCEEEe
Confidence 455666666666 55544444443 345677888889999877 5532211 12233333346899999
Q ss_pred cCCC
Q 031383 155 KHPE 158 (160)
Q Consensus 155 ~~~~ 158 (160)
|...
T Consensus 108 PTta 111 (349)
T cd08550 108 PTIA 111 (349)
T ss_pred CCcc
Confidence 8653
No 295
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=42.18 E-value=1.6e+02 Score=22.73 Aligned_cols=29 Identities=3% Similarity=0.087 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEEE
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~v 43 (160)
....+.+.+++|+++|++.+. -+|+++|=
T Consensus 182 Tr~~~eRIar~AF~~A~~r~~-k~Vt~v~K 210 (372)
T PLN00118 182 TRQASLRVAEYAFHYAKTHGR-KRVSAIHK 210 (372)
T ss_pred CHHHHHHHHHHHHHHHHHcCC-CeEEEEEC
Confidence 346788999999999988863 35777763
No 296
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.03 E-value=1.4e+02 Score=22.06 Aligned_cols=49 Identities=22% Similarity=0.244 Sum_probs=30.9
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccce---------eeccchhHHHhhcCCCCEEEec
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKR---------ALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~---------~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..+++...+.++|.|.+.......... ...-..+..+-+..++||+..-
T Consensus 231 ~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 288 (327)
T cd02803 231 IEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVG 288 (327)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeC
Confidence 466777888899999987543221111 1112355667777889998764
No 297
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=41.76 E-value=98 Score=20.19 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhcCCcc---eEEEEEecC--ChhhHHHHHhhhhCCCEEEE-ee--cCCcccceeeccchhHHHhh
Q 031383 74 ESVNSVMNRAEAVYRNFQNNI---HVKRVVGCG--DAKDVICGTVEKLEADTLVM-GS--HGYGFIKRALLGSVSDYCAK 145 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g--~~~~~i~~~a~~~~~dllvi-g~--~~~~~~~~~~~gs~~~~ll~ 145 (160)
...+.+++.+.+.+.+.+ + +++.....| ...-.+-..++..++|.+|. |. +|.+.-........++.|.+
T Consensus 16 ~i~~~ll~~a~~~l~~~g--~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~ 93 (144)
T PF00885_consen 16 EITDRLLEGALEELKRHG--VAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYVANAVSRGLMD 93 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT--TTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHHHHHHHHHHHH
Confidence 667778888888888888 5 677777777 55666667777777887664 63 55555444555555555554
Q ss_pred c---CCCCEE
Q 031383 146 H---VKCPVV 152 (160)
Q Consensus 146 ~---~~~pVl 152 (160)
- ...||.
T Consensus 94 lsl~~~~PV~ 103 (144)
T PF00885_consen 94 LSLEYGIPVI 103 (144)
T ss_dssp HHHHHTSEEE
T ss_pred HhccCCccEE
Confidence 3 245654
No 298
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=41.75 E-value=48 Score=25.79 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=16.5
Q ss_pred CChhhHHHHHhhhhCCCEEEEeecC
Q 031383 103 GDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 103 g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
|+-.+.+++.+++.++.++.+.+.+
T Consensus 102 GdDi~~v~~~~~~~~~~vi~v~t~g 126 (427)
T cd01971 102 GDDVGAVVSEFQEGGAPIVYLETGG 126 (427)
T ss_pred hcCHHHHHHHhhhcCCCEEEEECCC
Confidence 5555666665566677888876654
No 299
>PRK05406 LamB/YcsF family protein; Provisional
Probab=41.33 E-value=1.3e+02 Score=21.64 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=56.3
Q ss_pred ecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031383 12 VDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQ 91 (160)
Q Consensus 12 ~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (160)
..|........+..+++|+..+ ..|- .-+..+....|+.. ......++...........+..+++..|
T Consensus 36 CG~HAGDp~~M~~tv~lA~~~g--V~IG---AHPgypD~~gFGRR-------~m~~s~~el~~~v~yQigAL~~~a~~~g 103 (246)
T PRK05406 36 CGFHAGDPAVMRRTVRLAKENG--VAIG---AHPGYPDLEGFGRR-------NMDLSPEELYALVLYQIGALQAIARAAG 103 (246)
T ss_pred ccccCCCHHHHHHHHHHHHHcC--CeEc---cCCCCCccCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344445567888889988888 3332 22222221122111 1111223444455555666677777777
Q ss_pred CcceEEEE----Eec------CChhhHHHHHhhhhCCCEEEEeec
Q 031383 92 NNIHVKRV----VGC------GDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 92 ~~~~~~~~----~~~------g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
.++..+ ..+ ...++.+++.+.+.+.++++++..
T Consensus 104 --~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~ 146 (246)
T PRK05406 104 --GRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLA 146 (246)
T ss_pred --CeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC
Confidence 444332 222 256778888888889999998843
No 300
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=41.32 E-value=88 Score=19.53 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCC-CEEEEeecCCcccceeeccchhHHHhhcCC---CCEEEec
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEA-DTLVMGSHGYGFIKRALLGSVSDYCAKHVK---CPVVIVK 155 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~-dllvig~~~~~~~~~~~~gs~~~~ll~~~~---~pVlvv~ 155 (160)
+.+...+...+ ..++...... +....+.......+. |.||+..-+ +.+ ...+..++.... +|+-++|
T Consensus 18 ~~v~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGD-GTl-----~~vv~~l~~~~~~~~~~l~iiP 89 (130)
T PF00781_consen 18 KKVEPALRAAG--IDYEVIETESAGHAEALARILALDDYPDVIVVVGGD-GTL-----NEVVNGLMGSDREDKPPLGIIP 89 (130)
T ss_dssp HHHHHHHHHTT--CEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESH-HHH-----HHHHHHHCTSTSSS--EEEEEE
T ss_pred HHHHHHHHHcC--CceEEEEEeccchHHHHHHHHhhccCccEEEEEcCc-cHH-----HHHHHHHhhcCCCccceEEEec
Confidence 55666666677 6666655544 677777764444455 677765332 222 223344444432 4888888
Q ss_pred CCC
Q 031383 156 HPE 158 (160)
Q Consensus 156 ~~~ 158 (160)
-..
T Consensus 90 ~GT 92 (130)
T PF00781_consen 90 AGT 92 (130)
T ss_dssp -SS
T ss_pred CCC
Confidence 543
No 301
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=41.29 E-value=1.6e+02 Score=22.35 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecCChh---hHHHHHhhh--hCCCEEEEeecCCcccceeeccchhHHHhhcCC
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAK---DVICGTVEK--LEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK 148 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~i~~~a~~--~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~ 148 (160)
....+++....+..++..+.+++..++..+.-. .-..+..+. .+.|+|-+.-.....-.---+.++...|..+-.
T Consensus 150 ~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~ 229 (332)
T PF07745_consen 150 DNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYG 229 (332)
T ss_dssp HHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhC
Confidence 344556666666777777678888888877433 455565555 456666665444222111224556677777778
Q ss_pred CCEEEe
Q 031383 149 CPVVIV 154 (160)
Q Consensus 149 ~pVlvv 154 (160)
.||+|+
T Consensus 230 K~V~V~ 235 (332)
T PF07745_consen 230 KPVMVV 235 (332)
T ss_dssp -EEEEE
T ss_pred CeeEEE
Confidence 999997
No 302
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=41.23 E-value=71 Score=18.62 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=30.9
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCc-cc-ceeeccchhHHHhhcCCCCEEEecCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYG-FI-KRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~-~~-~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
...+.|.+..++.+++.|.+|..+.- +. .....-++.+.+-++.++||.+..+.
T Consensus 38 ~~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~~~l~~~l~~~~~~pv~~~nDa 93 (99)
T smart00732 38 ADAARLKKLIKKYQPDLIVIGLPLNMNGTASRETEEAFAELLKERFNLPVVLVDER 93 (99)
T ss_pred hHHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHhhCCcEEEEeCC
Confidence 34566666777777888888854321 11 10011233344555677999988654
No 303
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=41.17 E-value=71 Score=20.28 Aligned_cols=53 Identities=9% Similarity=0.025 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCccccee
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRA 134 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~ 134 (160)
.+.++..+.+.| +.++...+...-.+.-+..-+-..+|+||+.....-...++
T Consensus 21 AeaLe~~A~~~g--~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD~~i~~~~f 73 (122)
T COG1445 21 AEALEKAAKKLG--VEIKVETQGAVGIENRLTAEDIAAADVVILAADIEVDLSRF 73 (122)
T ss_pred HHHHHHHHHHcC--CeEEEEcCCcccccCcCCHHHHHhCCEEEEEecccccHhHh
Confidence 345555666677 55555544433222222222233899999987654444433
No 304
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=41.16 E-value=1.3e+02 Score=22.51 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=55.6
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCC---CcCCCCCCcccchhHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPV---HSSFDAAGYIFSNDVIKAVEKYASESVNSV 79 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (160)
.+.+||+|+-...+...+|+..+.+. +. ++..++.=...... ....+... .+..+....+..+++
T Consensus 12 ~~~krIv~aeaeD~~vL~Aa~~~~~e----gi-a~pILvG~~~~I~~~a~~~~l~l~~-------~eIid~~~~~~~~~y 79 (319)
T PF01515_consen 12 KKPKRIVFAEAEDERVLEAAKQAVEE----GI-AKPILVGDREEIREIAKELGLDLDG-------FEIIDPEDSEKLEEY 79 (319)
T ss_dssp TS-EEEEES-TTSHHHHHHHHHHHHT----TS-CEEEEES-HHHHHHHHHHTTC--TT-------SEEE-TTTSTTHHHH
T ss_pred cCCCeEEEeCCCCHHHHHHHHHHHHc----Cc-eEEEEEeChHHhcchhhhccccccc-------ceecCccccHHHHHH
Confidence 45689999988888777777777666 33 56666651000000 00000000 000001112334555
Q ss_pred HHHHHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
.+.+.+..++.| +..+..... .++...-...++..++|.++-|..+.
T Consensus 80 ~~~~~~lr~rKG--~~~~~a~~~~~~~~~~a~~mv~~G~aD~lv~G~~~t 127 (319)
T PF01515_consen 80 AEEYYELRQRKG--MTPEEARREVRDPNYFAAMMVRLGDADALVKGLIHT 127 (319)
T ss_dssp HHHHHHHHTTCT--S-HHHHHHHTTSHHHHHHHHHHTTSSSEEEE-SSSH
T ss_pred HHHHHHHhcccc--CCHHHHHHHHHHHHHHHHHHHHcCCCCEEecCCCCC
Confidence 555555556666 433321111 26666666778888999999996643
No 305
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=40.90 E-value=1.1e+02 Score=20.44 Aligned_cols=81 Identities=7% Similarity=0.082 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEEeC--CCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceE
Q 031383 19 MHALSWCLNNLFSPDTNNTLVLLYVKP--PLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHV 96 (160)
Q Consensus 19 ~~al~~a~~~a~~~~~~a~l~~l~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (160)
..-+..++++|+..+ ++...+|... ..... . .+...+...+.+..+.+.+++.| +.+
T Consensus 70 ~~~~~~~i~~a~~lg--~~~i~~~~g~~~~~~~~-------------~----~~~~~~~~~~~l~~l~~~a~~~g--v~i 128 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLG--AKYIVVHSGRYPSGPED-------------D----TEENWERLAENLRELAEIAEEYG--VRI 128 (213)
T ss_dssp HHHHHHHHHHHHHHT--BSEEEEECTTESSSTTS-------------S----HHHHHHHHHHHHHHHHHHHHHHT--SEE
T ss_pred HHHHHHHHHHHHHhC--CCceeecCcccccccCC-------------C----HHHHHHHHHHHHHHHHhhhhhhc--ceE
Confidence 567778888888888 7888888551 11110 0 12444566667777778888888 665
Q ss_pred EEEEecCC---hh---hHHHHHhhhhCCCE
Q 031383 97 KRVVGCGD---AK---DVICGTVEKLEADT 120 (160)
Q Consensus 97 ~~~~~~g~---~~---~~i~~~a~~~~~dl 120 (160)
......+. .. +.+.+..++.+.+-
T Consensus 129 ~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (213)
T PF01261_consen 129 ALENHPGPFSETPFSVEEIYRLLEEVDSPN 158 (213)
T ss_dssp EEE-SSSSSSSEESSHHHHHHHHHHHTTTT
T ss_pred EEecccCccccchhhHHHHHHHHhhcCCCc
Confidence 55544432 33 78888888777554
No 306
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=40.87 E-value=77 Score=22.08 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=31.7
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+.+...+.+++.+++....+.+......-....++.+.+++||+.-
T Consensus 149 ~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~ 196 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIAS 196 (234)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEe
Confidence 356666677789998887554443333233456677888889998864
No 307
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=40.58 E-value=65 Score=22.95 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=28.1
Q ss_pred HHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 110 CGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 110 ~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
++.+.+.+.|.+++|.+..-..+ -...+...+ ++.+.||++.|...
T Consensus 25 ~~~~~~~gtdai~vGGS~~vt~~--~~~~~v~~i-k~~~lPvilfp~~~ 70 (232)
T PRK04169 25 LEAICESGTDAIIVGGSDGVTEE--NVDELVKAI-KEYDLPVILFPGNI 70 (232)
T ss_pred HHHHHhcCCCEEEEcCCCccchH--HHHHHHHHH-hcCCCCEEEeCCCc
Confidence 35666678999999965422111 122233434 44789999988654
No 308
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=40.58 E-value=1.2e+02 Score=20.79 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCCh--hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+.+.++..+++.| +.+...-..++. ....++.....++|.+|+......... .-..+.+.++|++.+
T Consensus 15 ~~~~~g~~~~~~~~g--~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-------~~~~l~~~~ip~v~~ 85 (264)
T cd01537 15 AQVLKGIEEAAKAAG--YQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-------IVKLARKAGIPVVLV 85 (264)
T ss_pred HHHHHHHHHHHHHcC--CeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-------HHHHhhhcCCCEEEe
Confidence 345555555556667 665544443333 334444455558999988643322111 235667788999888
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
...
T Consensus 86 ~~~ 88 (264)
T cd01537 86 DRD 88 (264)
T ss_pred ccC
Confidence 543
No 309
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=40.56 E-value=28 Score=26.23 Aligned_cols=29 Identities=3% Similarity=-0.058 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
..+.+.++||+++|...+. -+|+++|=..
T Consensus 184 ~kseRIaryAF~yA~k~gR-KkVTaVHKAn 212 (375)
T KOG0784|consen 184 FKSERIARYAFEYAKKNGR-KKVTAVHKAN 212 (375)
T ss_pred hhhHHHHHHHHHHHHHhCC-ceEEEEeccC
Confidence 4578899999999999887 8999999554
No 310
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=40.55 E-value=80 Score=18.83 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCC-hhhHHH-HHhhhhCCCEEEEeecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGD-AKDVIC-GTVEKLEADTLVMGSHG 127 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~i~-~~a~~~~~dllvig~~~ 127 (160)
..+.+++.+++.| +.+....+... ....+- +... .+|++|+-...
T Consensus 17 aa~~L~~aa~~~g--~~~~ve~~~~~g~~~~l~~~~i~--~Ad~vi~~~~~ 63 (96)
T cd05569 17 AAEALEKAAKKLG--WEIKVETQGSLGIENELTAEDIA--EADAVILAADV 63 (96)
T ss_pred HHHHHHHHHHHCC--CeEEEEEecCcCccCcCCHHHHh--hCCEEEEecCC
Confidence 4456667777888 66666655543 233333 3344 89999997654
No 311
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=40.51 E-value=1.1e+02 Score=20.46 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh--hCCCEEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dllvig 124 (160)
.+...+.+.| ..+......+|..+.|.+..++ ..+|+||+.
T Consensus 23 ~l~~~L~~~G--~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 23 FLAKELAELG--IEVYRVTVVGDDEDRIAEALRRASERADLVITT 65 (170)
T ss_pred HHHHHHHHCC--CEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 4445566778 7776665666655555544332 378998885
No 312
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=40.18 E-value=1.3e+02 Score=21.27 Aligned_cols=48 Identities=8% Similarity=-0.066 Sum_probs=31.5
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...+.+++.+++-...+.+-..-.--....++.+.+++||+.-
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipvias 196 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVAS 196 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEe
Confidence 456666778889987776554443322233445677888888998864
No 313
>PRK02628 nadE NAD synthetase; Reviewed
Probab=40.07 E-value=1.4e+02 Score=24.92 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=27.6
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCC-CCeEEEEEE
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDT-NNTLVLLYV 43 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~-~a~l~~l~v 43 (160)
.++|+|+++|.-+|..++..+.+.....+. +.+|..++.
T Consensus 361 ~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 361 LKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 689999999998888777777766443331 146766666
No 314
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=39.93 E-value=1.3e+02 Score=21.05 Aligned_cols=72 Identities=10% Similarity=0.005 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHh-cCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 77 NSVMNRAEAVYRN-FQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 77 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..+.+.+.+.+++ .+ ..+......++.. ...++.....++|-+|+......... .. -..+.+.++||++
T Consensus 15 ~~~~~gi~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~-~~~l~~~~iPvv~ 86 (272)
T cd06301 15 TLLRNAMKEHAKVLGG--VELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATA-----PI-VKAANAAGIPLVY 86 (272)
T ss_pred HHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhH-----HH-HHHHHHCCCeEEE
Confidence 3455555555666 56 4444433333333 24455556679999998654322111 11 2335677899998
Q ss_pred ecC
Q 031383 154 VKH 156 (160)
Q Consensus 154 v~~ 156 (160)
+..
T Consensus 87 ~~~ 89 (272)
T cd06301 87 VNR 89 (272)
T ss_pred ecC
Confidence 854
No 315
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=39.91 E-value=1.6e+02 Score=22.15 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecC---ChhhHHHHHhhhhCCCEEEEeecCCcccceee--ccchhHHHhhcCC
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCG---DAKDVICGTVEKLEADTLVMGSHGYGFIKRAL--LGSVSDYCAKHVK 148 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~--~gs~~~~ll~~~~ 148 (160)
....+++.+.....++..+.+.+-.+...| +...-+.+...+.++|.=|+|.+=-.-|.+-+ +.++...+..+-.
T Consensus 196 ~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgtl~nL~~nl~dia~rY~ 275 (403)
T COG3867 196 DKMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGTLNNLTTNLNDIASRYH 275 (403)
T ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccCcHHHHHhHHHHHHHHhc
Confidence 345556666666667677677888888877 57778889999999999999976555555432 3456667777778
Q ss_pred CCEEEec
Q 031383 149 CPVVIVK 155 (160)
Q Consensus 149 ~pVlvv~ 155 (160)
..|+|+-
T Consensus 276 K~VmV~E 282 (403)
T COG3867 276 KDVMVVE 282 (403)
T ss_pred CeEEEEE
Confidence 8888874
No 316
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=39.87 E-value=57 Score=25.34 Aligned_cols=25 Identities=16% Similarity=0.411 Sum_probs=12.2
Q ss_pred CChhhHHHHHhh-hhCCCEEEEeecC
Q 031383 103 GDAKDVICGTVE-KLEADTLVMGSHG 127 (160)
Q Consensus 103 g~~~~~i~~~a~-~~~~dllvig~~~ 127 (160)
|+-.+.+.+.++ +.++.++.+.+.+
T Consensus 105 GdDi~~v~~~~~~~~~~pvi~v~t~g 130 (426)
T cd01972 105 GDDVESVVEELEDEIGIPVVALHCEG 130 (426)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCc
Confidence 444444454443 3455666655443
No 317
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=39.83 E-value=1.4e+02 Score=21.26 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=53.1
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeE-EEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTL-VLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l-~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
++++-+++..+|.-|+-+|.+. + -+| .++.+.+......++ +... ++.+..
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~----G--~eV~~Ll~~~p~~~dS~m~-----H~~n-----------------~~~~~~ 53 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE----G--HEVVYLLTVKPENGDSYMF-----HTPN-----------------LELAEL 53 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc----C--CeeEEEEEEecCCCCeeee-----eccc-----------------hHHHHH
Confidence 4667778888888888888776 4 244 555555555421111 1111 112222
Q ss_pred HHHhcCCcceEEEEEecC---ChhhHHHHHhhhhCCCEEEEee
Q 031383 86 VYRNFQNNIHVKRVVGCG---DAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g---~~~~~i~~~a~~~~~dllvig~ 125 (160)
.++..| +++......| +..+.+.+..+..++|-|+.|.
T Consensus 54 ~Ae~~g--i~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~Ga 94 (223)
T COG2102 54 QAEAMG--IPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGA 94 (223)
T ss_pred HHHhcC--CceEEEecCccchhhHHHHHHHHHhCcccEEEEch
Confidence 333445 6666665555 4667777888888899999985
No 318
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=39.80 E-value=1.6e+02 Score=22.18 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=18.5
Q ss_pred hhhHHHHHhhhhCCCEEEEeecC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~ 127 (160)
....+.+.|.++++.+|+.|...
T Consensus 148 ~~~~l~~~A~~~gi~~Il~G~~~ 170 (343)
T TIGR03573 148 IFASVYQVALKFNIPLIIWGENI 170 (343)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCH
Confidence 44577789999999999999654
No 319
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=39.75 E-value=34 Score=22.97 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=28.3
Q ss_pred hhhhCCCEEEEeecCCcccceeeccchhHHH-----hhc--CCCCEEEecCC
Q 031383 113 VEKLEADTLVMGSHGYGFIKRALLGSVSDYC-----AKH--VKCPVVIVKHP 157 (160)
Q Consensus 113 a~~~~~dllvig~~~~~~~~~~~~gs~~~~l-----l~~--~~~pVlvv~~~ 157 (160)
..-.++|++++..-..+.......| +++.| ++. ...||+++|..
T Consensus 84 lqlGkYD~llvaPaTsNTvAKIa~G-IADtLVTNAVaqa~Kg~VPvyivP~D 134 (187)
T COG1036 84 LQLGKYDFLLVAPATSNTVAKIAYG-IADTLVTNAVAQAGKGKVPVYIVPVD 134 (187)
T ss_pred eecccccEEEEcccccchHHHHHhh-hHHHHHHHHHHHhcCCCCcEEEeccc
Confidence 3445899999986665656555544 33333 333 35999999965
No 320
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=39.52 E-value=1e+02 Score=19.77 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=24.3
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
.++|+++|.-+|..++..+.+.. + -++.++++..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~--~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---G--LNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---C--CceEEEEeCC
Confidence 58999999999988888776542 2 2566677653
No 321
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=39.47 E-value=60 Score=26.05 Aligned_cols=28 Identities=7% Similarity=-0.050 Sum_probs=14.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCC
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLP 48 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~ 48 (160)
.+....|++.+..+ + --+.++|.-....
T Consensus 10 g~~~~Ga~~~a~~i----~--~~~~i~H~p~Gc~ 37 (513)
T CHL00076 10 GPAHIGTLRVASSF----K--NVHAIMHAPLGDD 37 (513)
T ss_pred CchhhhHHHHHHhc----C--CcEEEeeCCCCch
Confidence 34445555555555 4 2556677655443
No 322
>PRK06801 hypothetical protein; Provisional
Probab=39.43 E-value=1.6e+02 Score=21.80 Aligned_cols=55 Identities=9% Similarity=-0.039 Sum_probs=42.6
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccce-eeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKR-ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~-~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....++++.|++.+..+|+....+.....+ ..+......+.++++.||.+-=++.
T Consensus 29 e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~ 84 (286)
T PRK06801 29 HFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHG 84 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 788899999999999999988665443322 3466788899999999998765443
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.41 E-value=1.9e+02 Score=22.69 Aligned_cols=49 Identities=4% Similarity=0.109 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccc
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIK 132 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~ 132 (160)
+++...+..+ +++.......+..+.|.......++|+|++-+-|+....
T Consensus 252 QLk~yae~lg--vpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d 300 (407)
T PRK12726 252 QFQGYADKLD--VELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLA 300 (407)
T ss_pred HHHHHhhcCC--CCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccC
Confidence 4444555555 544422111123223322222347899999888876543
No 324
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=39.23 E-value=88 Score=22.08 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=11.9
Q ss_pred hhhHHHHHhhhhCCCEEEEe
Q 031383 105 AKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig 124 (160)
..+.+++.+++.++|+||..
T Consensus 19 ~le~l~~~~~~~~~D~vv~~ 38 (224)
T cd07388 19 ALEKLVGLAPETGADAIVLI 38 (224)
T ss_pred HHHHHHHHHhhcCCCEEEEC
Confidence 34455565655667766664
No 325
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=39.17 E-value=91 Score=21.49 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=8.1
Q ss_pred hHHHhhcCCCCEEEe
Q 031383 140 SDYCAKHVKCPVVIV 154 (160)
Q Consensus 140 ~~~ll~~~~~pVlvv 154 (160)
...++....+||++|
T Consensus 125 ~adl~~~l~~pvilV 139 (222)
T PRK00090 125 LADLAKQLQLPVILV 139 (222)
T ss_pred HHHHHHHhCCCEEEE
Confidence 344555555666555
No 326
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=39.13 E-value=1.9e+02 Score=22.71 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=15.2
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
..+..+++.+.+.+.+...+|+.+
T Consensus 243 ~~~~~ll~~a~~~g~~~~wigs~~ 266 (458)
T cd06375 243 EDARELLAAAKRLNASFTWVASDG 266 (458)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecc
Confidence 455566677777777766666544
No 327
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=39.02 E-value=58 Score=22.23 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=27.4
Q ss_pred HHHHHhh----hhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 108 VICGTVE----KLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 108 ~i~~~a~----~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.+.+.++ ..++|.||+|+.+...+.. ..+.+....+.||+
T Consensus 162 ~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~-----~~~~l~~~~gipVi 205 (216)
T PF01177_consen 162 ILAEAARELIKEDGADAIILGCTHLPLLLG-----AIEALEEELGIPVI 205 (216)
T ss_dssp HHHHHHHHHHHCTTSSEEEEESTTGGGGHH-----HHHHHHHTCSSEEE
T ss_pred HHHHHHHHHhccCCCCEEEECCCchHHHHH-----HHHhhcccCCCEEE
Confidence 5666665 7899999999888774422 33566666677765
No 328
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=38.87 E-value=1.8e+02 Score=22.36 Aligned_cols=29 Identities=3% Similarity=0.004 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
...+.+.+++|+++|+..+. -+|+++|=.
T Consensus 167 r~~~eRIar~AF~~A~~r~r-kkVt~v~Ka 195 (360)
T PLN00123 167 KFCSERIAKYAFEYAYLNNR-KKVTAVHKA 195 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcEEEEECC
Confidence 46788999999999977643 368887743
No 329
>PF06050 HGD-D: 2-hydroxyglutaryl-CoA dehydratase, D-component ; InterPro: IPR010327 Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate [].; PDB: 3O3O_B 3O3N_D 3O3M_D.
Probab=38.86 E-value=44 Score=24.81 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=35.1
Q ss_pred CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEec
Q 031383 103 GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVK 155 (160)
Q Consensus 103 g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~ 155 (160)
.+..+.+.+.+++.++|.+|............ .....++.+++. .+|+|.+-
T Consensus 272 ~~r~~~~~~~~~~~~~dgvi~~~~~~C~~~~~-~~~~l~~~~~~~~gIP~l~le 324 (349)
T PF06050_consen 272 ERRIEYIDDLIEKYGADGVIFHGHKGCDPYSY-DQPLLKEALREFLGIPVLFLE 324 (349)
T ss_dssp HCHHHHHHHHHHHTT-SEEEEEEETT-HHHHC-CHHHHHHHHHCCHT--EEEEE
T ss_pred HhHHHHHHHHHHHhCCCEEEEhHhcCCCcHHH-HHHHHHHHHHHhcCCCeEeec
Confidence 57788899999999999999987665433222 233556777777 99999885
No 330
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=38.84 E-value=1.4e+02 Score=20.95 Aligned_cols=71 Identities=17% Similarity=0.104 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEec-C---------ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHh
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGC-G---------DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCA 144 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g---------~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll 144 (160)
...+...++.+.+.+++ +++-..... | +......+.+.+.++|.|-++..+ ++ ...+++.
T Consensus 106 ~~~~~i~~v~~~~~~~g--~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~--~~------~~~~~i~ 175 (235)
T cd00958 106 EMLEELARVAAEAHKYG--LPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG--DA------ESFKEVV 175 (235)
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC--CH------HHHHHHH
Confidence 34445556666666777 544332211 1 111222344777899999885321 11 3457888
Q ss_pred hcCCCCEEEec
Q 031383 145 KHVKCPVVIVK 155 (160)
Q Consensus 145 ~~~~~pVlvv~ 155 (160)
+.+++||++.-
T Consensus 176 ~~~~~pvv~~G 186 (235)
T cd00958 176 EGCPVPVVIAG 186 (235)
T ss_pred hcCCCCEEEeC
Confidence 89999987764
No 331
>PRK08392 hypothetical protein; Provisional
Probab=38.71 E-value=1.3e+02 Score=20.80 Aligned_cols=66 Identities=9% Similarity=-0.093 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcc--cceeeccchhHHHhhcCCCC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGF--IKRALLGSVSDYCAKHVKCP 150 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~--~~~~~~gs~~~~ll~~~~~p 150 (160)
..+++.+.+.+.| +.++.......+...+++.+.+.+. .+++|+..+.. +.. + ..+..++++...+
T Consensus 138 ~~~~i~~~~~~~g--~~lEiNt~~~~p~~~~l~~~~~~G~-~~~igSDAH~~~~vg~--~-~~a~~~~~~~g~~ 205 (215)
T PRK08392 138 ELKEILDLAEAYG--KAFEISSRYRVPDLEFIRECIKRGI-KLTFASDAHRPEDVGN--V-SWSLKVFKKAGGK 205 (215)
T ss_pred HHHHHHHHHHHhC--CEEEEeCCCCCCCHHHHHHHHHcCC-EEEEeCCCCChHHCCc--H-HHHHHHHHHcCCC
Confidence 4456666777788 6666655556677789999998886 58888764442 321 2 2456677777643
No 332
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=38.59 E-value=1.6e+02 Score=21.72 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=40.5
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccce-eeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKR-ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~-~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....++++.|++.+..+|+.-+.+.-.... -.+......+.+++++||.+-=++.
T Consensus 29 e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~ 84 (284)
T PRK12737 29 ETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHH 84 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 788999999999999999987654322111 2346678889999999998764443
No 333
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=38.58 E-value=1.6e+02 Score=21.72 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=40.6
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccce-eeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKR-ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~-~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....++++.|++.+..+|+..+.+.....+ -.+......+.+++++||.+-=++.
T Consensus 29 e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~ 84 (284)
T PRK12857 29 EIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHG 84 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 788899999999999999987654332211 2345667888999999998865443
No 334
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=38.51 E-value=52 Score=21.69 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=10.4
Q ss_pred HHhhcCCCCEEEecCCC
Q 031383 142 YCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 142 ~ll~~~~~pVlvv~~~~ 158 (160)
..+...++|+++++.-.
T Consensus 46 ~~l~~~~~p~~~v~GNH 62 (188)
T cd07392 46 NLLLAIGVPVLAVPGNC 62 (188)
T ss_pred HHHHhcCCCEEEEcCCC
Confidence 45556667777776543
No 335
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=38.50 E-value=28 Score=28.06 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=19.6
Q ss_pred ChhhHHHHHhhhhCCCEEEEee
Q 031383 104 DAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~ 125 (160)
..-++|+..|++++.|||++|.
T Consensus 39 ~tFeEIl~iA~e~~VDmiLlGG 60 (646)
T KOG2310|consen 39 VTFEEILEIAQENDVDMILLGG 60 (646)
T ss_pred HHHHHHHHHHHhcCCcEEEecC
Confidence 3567999999999999999995
No 336
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=38.34 E-value=1.5e+02 Score=21.15 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=28.3
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
++++|.+.|.-+|..++.+|.+. . .+++.+++....
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~----~--~~v~alt~dygq 37 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ----Y--DEVHCVTFDYGQ 37 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc----C--CeEEEEEEEeCC
Confidence 68999999999999998888542 3 378888887654
No 337
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=38.27 E-value=2.1e+02 Score=22.90 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc------CCCCEEE
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH------VKCPVVI 153 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~------~~~pVlv 153 (160)
+.+...++..+ +.++...... ..+..+.+.+...++|.||+.. |-+.+ ..+++.|+.. .++|+-+
T Consensus 133 ~~v~~~L~~~g--i~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vG-GDGTl-----nEVvNGL~~~~~~~~~~~~pLGi 204 (481)
T PLN02958 133 DVVKPLLEDAD--IQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVS-GDGIL-----VEVVNGLLEREDWKTAIKLPIGM 204 (481)
T ss_pred HHHHHHHHHcC--CeEEEEeccCccHHHHHHHHhhhcCCCEEEEEc-CCCHH-----HHHHHHHhhCccccccccCceEE
Confidence 34666677777 7776655444 5666777766666788777642 22322 3344555543 3589999
Q ss_pred ecCCCC
Q 031383 154 VKHPEE 159 (160)
Q Consensus 154 v~~~~~ 159 (160)
+|-...
T Consensus 205 IPaGTg 210 (481)
T PLN02958 205 VPAGTG 210 (481)
T ss_pred ecCcCc
Confidence 986544
No 338
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=38.27 E-value=75 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=12.8
Q ss_pred CChhhHHHHHhh-hhCCCEEEEeecC
Q 031383 103 GDAKDVICGTVE-KLEADTLVMGSHG 127 (160)
Q Consensus 103 g~~~~~i~~~a~-~~~~dllvig~~~ 127 (160)
|+-.+.+++.++ +.++.++.+.+.+
T Consensus 103 GdDi~~v~~~~~~~~~~~vi~v~t~g 128 (406)
T cd01967 103 GDDIEAVAKEASKELGIPVIPVNCEG 128 (406)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCC
Confidence 544444444433 4456666665543
No 339
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=38.21 E-value=88 Score=21.96 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=4.0
Q ss_pred EEEEEecCC
Q 031383 96 VKRVVGCGD 104 (160)
Q Consensus 96 ~~~~~~~g~ 104 (160)
....+..||
T Consensus 33 ~d~vv~~GD 41 (239)
T TIGR03729 33 IDHLHIAGD 41 (239)
T ss_pred CCEEEECCc
Confidence 344444444
No 340
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=38.13 E-value=1.7e+02 Score=21.73 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=41.9
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccce--eeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKR--ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~--~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....+|++.|++.+..+||=.+.+...... ..+-..+..++.+.++||.+--++.
T Consensus 29 E~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg 85 (286)
T COG0191 29 ETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHG 85 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 788899999999999999988776444333 2334567788889999998875554
No 341
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=37.89 E-value=1.5e+02 Score=21.14 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=24.2
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
..++|+|+++|.-+|..++..+.+.. + .++..+++.
T Consensus 21 ~~~~V~vglSGGiDSsvla~l~~~~~---~--~~~~~~~~~ 56 (250)
T TIGR00552 21 GAKGVVLGLSGGIDSAVVAALCVEAL---G--EQNHALLLP 56 (250)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHhh---C--CceEEEEEC
Confidence 35789999999988887766554432 2 255666664
No 342
>PLN02417 dihydrodipicolinate synthase
Probab=37.57 E-value=1.6e+02 Score=21.43 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=34.6
Q ss_pred ceEEEEEecCCh--hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 94 IHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 94 ~~~~~~~~~g~~--~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+++-..+...+. .-++.+.+++.++|-+++...-......--+-..-..+...+ ||++...+
T Consensus 71 ~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~--pi~lYn~P 134 (280)
T PLN02417 71 IKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG--PTIIYNVP 134 (280)
T ss_pred CcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC--CEEEEECh
Confidence 555554444333 445567889999999988754322211111112334566654 99988543
No 343
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.34 E-value=1.4e+02 Score=20.77 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCCh--hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
...+..+.+++.+++.| ..+.......+. ....++.+...++|-+|+......... ...+. ++..++||+
T Consensus 13 ~~~~~~~~i~~~~~~~g--~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~~~~-~~~~~ipvV 84 (267)
T cd06322 13 FYIELANAMKEEAKKQK--VNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIR-----AAIAK-AKKAGIPVI 84 (267)
T ss_pred HHHHHHHHHHHHHHhcC--CEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhH-----HHHHH-HHHCCCCEE
Confidence 33456666666677777 555443322333 335556666779999998543222111 11233 455678998
Q ss_pred EecC
Q 031383 153 IVKH 156 (160)
Q Consensus 153 vv~~ 156 (160)
.+..
T Consensus 85 ~~~~ 88 (267)
T cd06322 85 TVDI 88 (267)
T ss_pred EEcc
Confidence 8853
No 344
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=37.34 E-value=35 Score=26.58 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=20.2
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+..+.|+++|++.++||+|+|..
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGPE 72 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGPE 72 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECCc
Confidence 45789999999999999999964
No 345
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=37.26 E-value=1.4e+02 Score=20.65 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=29.8
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcc-cceeeccchhHHHhhcCCCCEEEec
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGF-IKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~-~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
....+++...+.++|.|.+..+.... ......-.....+.+..++||+..-
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~G 190 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANG 190 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeC
Confidence 45567777788899999885442211 1111111234566677789988753
No 346
>PRK06455 riboflavin synthase; Provisional
Probab=37.21 E-value=1.3e+02 Score=20.10 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEE-EeecCCcccceeeccchhHHHh---hcCCCCE
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLV-MGSHGYGFIKRALLGSVSDYCA---KHVKCPV 151 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllv-ig~~~~~~~~~~~~gs~~~~ll---~~~~~pV 151 (160)
.+++.+.+.+++.+...++.....-| ...-.+-+.+++.++|.+| +|+-+++.-....-...+..|. -.+..||
T Consensus 15 ~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~t~~PV 94 (155)
T PRK06455 15 DMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAHEASIGLIMAQLMTNKHI 94 (155)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHHHHHHHHHHHHhhhCCCE
Confidence 35566666666644336676666667 5555666777777888766 4766655544444444444443 3456888
Q ss_pred EEe
Q 031383 152 VIV 154 (160)
Q Consensus 152 lvv 154 (160)
+-|
T Consensus 95 i~v 97 (155)
T PRK06455 95 IEV 97 (155)
T ss_pred EEE
Confidence 766
No 347
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=37.03 E-value=1.1e+02 Score=19.32 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh--hCCCEEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dllvig 124 (160)
.+...+++.| ..+.......+..+.|.+..++ ..+|+||+.
T Consensus 22 ~l~~~l~~~G--~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliitt 64 (135)
T smart00852 22 ALAELLTELG--IEVTRYVIVPDDKEAIKEALREALERADLVITT 64 (135)
T ss_pred HHHHHHHHCC--CeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEc
Confidence 3445566777 5554443334554444444332 268988884
No 348
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.97 E-value=1.6e+02 Score=21.28 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHh--cCCcceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 77 NSVMNRAEAVYRN--FQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 77 ~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
..+++.+.+.+++ .+ +.+.......+... .+++.+...++|-+|+........ ..... -+....+||+
T Consensus 15 ~~~~~gi~~~a~~~~~g--~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~-----~~~~~-~~~~~giPvV 86 (303)
T cd01539 15 SLVRKNLEDIQKENGGK--VEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAA-----QTVIN-KAKQKNIPVI 86 (303)
T ss_pred HHHHHHHHHHHHhhCCC--eeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhH-----HHHHH-HHHHCCCCEE
Confidence 3445555555665 44 55444433334332 456666778999888864321111 11223 3456789998
Q ss_pred Eec
Q 031383 153 IVK 155 (160)
Q Consensus 153 vv~ 155 (160)
++-
T Consensus 87 ~~~ 89 (303)
T cd01539 87 FFN 89 (303)
T ss_pred EeC
Confidence 874
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=36.78 E-value=1.7e+02 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=16.4
Q ss_pred HHHhhhhCCCEEEEeecCCcccc
Q 031383 110 CGTVEKLEADTLVMGSHGYGFIK 132 (160)
Q Consensus 110 ~~~a~~~~~dllvig~~~~~~~~ 132 (160)
+..+...++|+|++-+.++....
T Consensus 147 l~~~~~~~~D~ViIDT~G~~~~d 169 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGRLQNK 169 (272)
T ss_pred HHHHHHCCCCEEEEeCCCCCcch
Confidence 34455678999999888776543
No 350
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=36.77 E-value=87 Score=22.40 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=17.2
Q ss_pred CCCceEEEEEecCChHHHHHHHHHHHh
Q 031383 2 NTNERRVVVAVDESEESMHALSWCLNN 28 (160)
Q Consensus 2 ~~~~~~Ilv~~d~s~~s~~al~~a~~~ 28 (160)
..+.++|++++|.++ ..++.|.+.
T Consensus 33 ~~~v~~I~~alD~t~---~vi~~Ai~~ 56 (249)
T TIGR00486 33 NEEVKKVVVAVDASE---SVADEAVRL 56 (249)
T ss_pred CcccCEEEEEecCCH---HHHHHHHHC
Confidence 356789999999976 455666554
No 351
>PRK08417 dihydroorotase; Provisional
Probab=36.43 E-value=39 Score=25.83 Aligned_cols=92 Identities=7% Similarity=0.010 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Q 031383 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASE--------SVNSVMNRAEAVYRN 89 (160)
Q Consensus 18 s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 89 (160)
...++..++.+|+..+ ++++++|+...... +.+. +.++ ..-..+-.-.+.+.+
T Consensus 180 E~~~v~~~~~la~~~~--~~lhi~hvS~~~~~----------------~~i~-~ak~~g~~vt~ev~ph~L~l~~~~~~~ 240 (386)
T PRK08417 180 ETKEVAKMKELAKFYK--NKVLFDTLALPRSL----------------ELLD-KFKSEGEKLLKEVSIHHLILDDSACEN 240 (386)
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEeCCCHHHH----------------HHHH-HHHHCCCCEEEEechHHHeeCHHHhcC
Confidence 4458899999999999 89999999865432 1111 0000 000111111122223
Q ss_pred cCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCC
Q 031383 90 FQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 90 ~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
++...++.+-.+...-.+.|.+...+..+|+|.-.+...
T Consensus 241 ~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~ 279 (386)
T PRK08417 241 FNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAK 279 (386)
T ss_pred cCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 332245555566666778899999988899888875443
No 352
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=36.30 E-value=1.7e+02 Score=21.49 Aligned_cols=41 Identities=7% Similarity=-0.155 Sum_probs=25.9
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
|..+|++..+-+-+.|.---..+.+-.++.. + .+|.=+.-.
T Consensus 1 ~~~~m~~~vitv~G~DrpGIVa~VT~~La~~-~--vNI~dls~~ 41 (286)
T PRK13011 1 MSRRPDTFVLTLSCPSAAGIVAAVTGFLAEH-G--CYITELHSF 41 (286)
T ss_pred CCCCCceEEEEEEeCCCCCHHHHHHHHHHhC-C--CCEEEeeee
Confidence 6778888888887777655555555555443 4 466555543
No 353
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=36.27 E-value=1.6e+02 Score=20.96 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccch---hHHHhhcCCCCEEE
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSV---SDYCAKHVKCPVVI 153 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~---~~~ll~~~~~pVlv 153 (160)
.+.+...+++.| +..-..+-.....+.|..+++...--+.+|+..+.++....+..+. .+.+-+..++||.+
T Consensus 118 ~~~~~~~~~~~g--~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 118 AEEFREAAKEYG--LDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred HHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 445566667777 5555555555666666666553222345556555554443233333 34444455688876
No 354
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=36.26 E-value=79 Score=25.07 Aligned_cols=26 Identities=8% Similarity=0.127 Sum_probs=16.9
Q ss_pred CChhhHHHHHh-hhhCCCEEEEeecCC
Q 031383 103 GDAKDVICGTV-EKLEADTLVMGSHGY 128 (160)
Q Consensus 103 g~~~~~i~~~a-~~~~~dllvig~~~~ 128 (160)
|+-.+.+.+.+ ++.++.+|.+-+.|-
T Consensus 113 GdDle~va~~~~~~~gipVV~v~~~Gf 139 (457)
T CHL00073 113 KMDLEGMAPKLEAEIGIPIVVARANGL 139 (457)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCCc
Confidence 55555665444 477888888876553
No 355
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=36.09 E-value=67 Score=24.97 Aligned_cols=25 Identities=4% Similarity=0.021 Sum_probs=12.0
Q ss_pred CChhhHHHHHhh-hhCCCEEEEeecC
Q 031383 103 GDAKDVICGTVE-KLEADTLVMGSHG 127 (160)
Q Consensus 103 g~~~~~i~~~a~-~~~~dllvig~~~ 127 (160)
|+-.+.+.+.++ +.++.++.+.+.+
T Consensus 101 GdDi~~v~~~~~~~~~~~vi~v~t~g 126 (430)
T cd01981 101 QEDLQNFVRAAGLSSKSPVLPLDVNH 126 (430)
T ss_pred hhCHHHHHHHhhhccCCCeEEecCCC
Confidence 444445544443 3455555555444
No 356
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=36.08 E-value=1.7e+02 Score=21.19 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=32.8
Q ss_pred hcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---Ccccceeeccc-hhHHHhhcCCCCEEEec
Q 031383 89 NFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGS-VSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 89 ~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs-~~~~ll~~~~~pVlvv~ 155 (160)
+.| +++...... ++..+... ++|.+++|+.. .+++.... |+ ...-+.++.++||+++-
T Consensus 156 ~~g--i~v~~i~d~-----~~~~~m~~-~vd~VliGad~v~~nG~v~nk~-Gt~~~a~~Ak~~~vPv~v~~ 217 (282)
T PF01008_consen 156 EAG--IPVTLIPDS-----AVGYVMPR-DVDKVLIGADAVLANGGVVNKV-GTLQLALAAKEFNVPVYVLA 217 (282)
T ss_dssp HTT---EEEEE-GG-----GHHHHHHC-TESEEEEE-SEEETTS-EEEET-THHHHHHHHHHTT-EEEEE-
T ss_pred hcc--eeEEEEech-----HHHHHHHH-hCCeeEEeeeEEecCCCEeehh-hHHHHHHHHHhhCCCEEEEc
Confidence 456 666655542 34555552 49999999764 44454443 44 44446677789999983
No 357
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=36.07 E-value=83 Score=24.50 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=35.3
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..+.|.+.+++.++|=||.-..........-....-+.+..+..+|+|.+-
T Consensus 338 R~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE 388 (413)
T TIGR02260 338 RVDLLEKYINEYEADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIE 388 (413)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEE
Confidence 567789999999999999976554443322222234556666899999984
No 358
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=36.07 E-value=1.7e+02 Score=21.26 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=26.1
Q ss_pred HHHHHhhhhCCCEEEEeecCCc----ccceeeccchhHHHhhcCCCCEEEecC
Q 031383 108 VICGTVEKLEADTLVMGSHGYG----FIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~~~~~----~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+++... ++|++|+|..+.- .+...+.--....+.+....|++++..
T Consensus 57 ~~~~~l~--~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~ 107 (298)
T TIGR03609 57 AVLRALR--RADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQ 107 (298)
T ss_pred HHHHHHH--HCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEec
Confidence 5666666 8899999864321 111111100123455667789888753
No 359
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=36.07 E-value=91 Score=21.37 Aligned_cols=83 Identities=10% Similarity=0.108 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCC--cceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC
Q 031383 71 YASESVNSVMNRAEAVYR-NFQN--NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV 147 (160)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~ 147 (160)
.+++..++.+..+.+-.. ++++ .-.++..-...+..+.+.+..+..+-.-+++++..+......-+. -.++.+.+.
T Consensus 53 ~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~-~lr~~l~~~ 131 (185)
T PF09936_consen 53 AQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYA-ELRRMLEEE 131 (185)
T ss_dssp HHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HH-HHHHHHHH-
T ss_pred HHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHH-HHHHHHhcc
Confidence 445666666666665443 2221 112344455568888888888888888888887766443333333 335566777
Q ss_pred CCCEEEe
Q 031383 148 KCPVVIV 154 (160)
Q Consensus 148 ~~pVlvv 154 (160)
..|+|++
T Consensus 132 ~~P~Lll 138 (185)
T PF09936_consen 132 DRPVLLL 138 (185)
T ss_dssp -S-EEEE
T ss_pred CCeEEEE
Confidence 8899887
No 360
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.98 E-value=1.2e+02 Score=20.20 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=19.0
Q ss_pred hhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 114 EKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 114 ~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
...++|++|-. |.+++.|-++.+.||+-++..
T Consensus 31 ~~~g~dViIsR------------G~ta~~lr~~~~iPVV~I~~s 62 (176)
T PF06506_consen 31 ESEGADVIISR------------GGTAELLRKHVSIPVVEIPIS 62 (176)
T ss_dssp TTTT-SEEEEE------------HHHHHHHHCC-SS-EEEE---
T ss_pred HhcCCeEEEEC------------CHHHHHHHHhCCCCEEEECCC
Confidence 55789988864 445666777778999888653
No 361
>PLN02476 O-methyltransferase
Probab=35.94 E-value=1.3e+02 Score=22.05 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhh---hhCCCEEEEeecC
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVE---KLEADTLVMGSHG 127 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~---~~~~dllvig~~~ 127 (160)
+..+.++..+++.| +.-...+..|+..+.+-+... ...+|++++....
T Consensus 154 e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 154 NSLEVAKRYYELAG--VSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCH
Confidence 34556666667777 654566777888877766542 3479999998654
No 362
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=35.76 E-value=80 Score=20.47 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=20.0
Q ss_pred CCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 117 EADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 117 ~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.+|+||+-....+ ..+.+..++.+||+
T Consensus 94 ~~D~iv~R~~~~~---------~~~~~a~~~~vPVI 120 (142)
T PF02729_consen 94 YVDAIVIRHPSHG---------ALEELAEHSSVPVI 120 (142)
T ss_dssp HCSEEEEEESSHH---------HHHHHHHHCSSEEE
T ss_pred hhheEEEEeccch---------HHHHHHHhccCCeE
Confidence 4999999744433 45778888999986
No 363
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.57 E-value=89 Score=24.13 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=13.3
Q ss_pred CChhhHHHHHhh-hhCCCEEEEeecC
Q 031383 103 GDAKDVICGTVE-KLEADTLVMGSHG 127 (160)
Q Consensus 103 g~~~~~i~~~a~-~~~~dllvig~~~ 127 (160)
|+-.+.+++..+ +.++.++.+.+.+
T Consensus 102 GdDi~~v~~~~~~~~~~~vi~v~t~g 127 (410)
T cd01968 102 GDDIDAVCKTASEKFGIPVIPVHSPG 127 (410)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEECCC
Confidence 555555555444 3456666665444
No 364
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=35.43 E-value=2e+02 Score=21.94 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=40.9
Q ss_pred CChhhHHHHHhhhhCCCEEEEeecCCccc-cee---------------eccchhHHHhhcCCCCEEEecCC
Q 031383 103 GDAKDVICGTVEKLEADTLVMGSHGYGFI-KRA---------------LLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 103 g~~~~~i~~~a~~~~~dllvig~~~~~~~-~~~---------------~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
-....++++.|++.+..+|+.-+.+.... ... .+......+.+++++||.+-=++
T Consensus 26 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDH 96 (345)
T cd00946 26 SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDH 96 (345)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 37889999999999999999876653221 111 45677788999999998876443
No 365
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.27 E-value=2e+02 Score=21.97 Aligned_cols=106 Identities=11% Similarity=0.033 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcce
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
+....++++|..+... + +++.--..+.+......+. ...++-++.+.+..++.| +.
T Consensus 112 Es~eq~l~~A~~lk~~-g--~~~~r~g~~kpRtsp~sf~-------------------G~g~~gl~~L~~~~~e~G--l~ 167 (352)
T PRK13396 112 ENEEMIVETAKRVKAA-G--AKFLRGGAYKPRTSPYAFQ-------------------GHGESALELLAAAREATG--LG 167 (352)
T ss_pred cCHHHHHHHHHHHHHc-C--CCEEEeeeecCCCCCcccC-------------------CchHHHHHHHHHHHHHcC--Cc
Confidence 3445577777776443 5 5665555665433322221 122334455556666788 88
Q ss_pred EEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 96 ~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+-+.+..-...+.+.++ +|++=+|++....+. ..+ -+.++..||++=+..
T Consensus 168 ~~tev~d~~~v~~~~~~-----~d~lqIga~~~~n~~------LL~-~va~t~kPVllk~G~ 217 (352)
T PRK13396 168 IITEVMDAADLEKIAEV-----ADVIQVGARNMQNFS------LLK-KVGAQDKPVLLKRGM 217 (352)
T ss_pred EEEeeCCHHHHHHHHhh-----CCeEEECcccccCHH------HHH-HHHccCCeEEEeCCC
Confidence 87777765555555443 799999987655432 112 333457788876544
No 366
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=35.27 E-value=68 Score=25.21 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=11.8
Q ss_pred CChhhHHHHHhh-hhCCCEEEEeecC
Q 031383 103 GDAKDVICGTVE-KLEADTLVMGSHG 127 (160)
Q Consensus 103 g~~~~~i~~~a~-~~~~dllvig~~~ 127 (160)
|+-.+.+.+.++ +.++.++.+.+.+
T Consensus 137 GdDi~~v~~e~~~~~~~~vi~v~t~g 162 (456)
T TIGR01283 137 GDDLEAVCKAAAEKTGIPVIPVDSEG 162 (456)
T ss_pred cCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 444444444433 3455555555443
No 367
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=35.20 E-value=2.1e+02 Score=22.05 Aligned_cols=50 Identities=18% Similarity=0.033 Sum_probs=30.9
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCccc--ceeeccchhHHHhhcCCCCEEE
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFI--KRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~--~~~~~gs~~~~ll~~~~~pVlv 153 (160)
....++.+.+.+.++|+|++..+....- ...-......++.++.++||+.
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 4677888999999999999963321110 0000011234677788899986
No 368
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=35.20 E-value=64 Score=22.35 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=9.2
Q ss_pred hHHHhhcCC-CCEEEec
Q 031383 140 SDYCAKHVK-CPVVIVK 155 (160)
Q Consensus 140 ~~~ll~~~~-~pVlvv~ 155 (160)
.++.|...+ .|++|+-
T Consensus 97 L~~~L~~~~~~~~iv~~ 113 (214)
T cd07399 97 ANEVLKKHPDRPAILTT 113 (214)
T ss_pred HHHHHHHCCCCCEEEEe
Confidence 445555554 6777663
No 369
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=35.13 E-value=2.3e+02 Score=22.57 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=29.6
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
.-.++++.++|.-+|..|+.++.+. + .++.++|+....
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~kr----G--~~v~~l~f~~g~ 213 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMRR----G--SRVHYCFFNLGG 213 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHHc----C--CEEEEEEEecCC
Confidence 3478999999998888887666664 6 699999997443
No 370
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=35.05 E-value=1.8e+02 Score=21.33 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=41.0
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccce-eeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKR-ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~-~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....++++.|++.+..+|+--..+.-.... ..+......+.+++++||.+-=++.
T Consensus 24 e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~ 79 (276)
T cd00947 24 ETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHG 79 (276)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 788999999999999999987654332222 3356677888999999998864443
No 371
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=34.97 E-value=85 Score=23.47 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
..+...+.+++.+ ..++..+..++..+.=.++-. +.|+||++...
T Consensus 86 raeas~erl~~LN--PmV~v~~d~edl~ek~eeff~--qFdlVV~~~~s 130 (331)
T KOG2014|consen 86 RAEASLERLQDLN--PMVDVSVDKEDLSEKDEEFFT--QFDLVVATDQS 130 (331)
T ss_pred HHHHHHHHHHhcC--CceEEEechhhhhhcchhhhh--ceeEEEEeccc
Confidence 3344445556666 444444444444433344444 77888877443
No 372
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=34.97 E-value=1.8e+02 Score=22.33 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=35.2
Q ss_pred hHHHHHhhhhCCCEEEEeec-------CCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 107 DVICGTVEKLEADTLVMGSH-------GYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~-------~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
......+....+|++|+-.. ......-..|-.-+++|..+..|.|+.++++.
T Consensus 184 rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy~hHts 242 (402)
T COG3598 184 RRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIYIHHTS 242 (402)
T ss_pred HHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34455667778999999632 22333333445567889999999999997653
No 373
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=34.83 E-value=97 Score=18.11 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
+.++...++.| ..+....+...-...-+..-.-..+|++|+.....
T Consensus 18 e~L~~aA~~~G--~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~~ 63 (85)
T TIGR00829 18 EALEKAAKKRG--WEVKVETQGSVGAQNALTAEDIAAADGVILAADRE 63 (85)
T ss_pred HHHHHHHHHCC--CeEEEEecCCcCccCCCCHHHHHhCCEEEEeccCC
Confidence 45556666777 55555555443222222112222899999976543
No 374
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=34.67 E-value=1.7e+02 Score=20.80 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=27.9
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
+++.+|-.+|..+|...+.||.+- . -+|+++++.-..
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~~----~--~ev~alsfdYGQ 38 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKKE----G--YEVHALTFDYGQ 38 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHhc----C--CEEEEEEeeCCC
Confidence 478888888988899888888766 3 378888776433
No 375
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=34.53 E-value=1.9e+02 Score=21.29 Aligned_cols=55 Identities=16% Similarity=0.078 Sum_probs=40.6
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccce-eeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKR-ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~-~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....++++.|++.+..+|+..+.+.-.... -+++.......+++++||.+-=++.
T Consensus 29 e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~ 84 (281)
T PRK06806 29 EMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHG 84 (281)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 788899999999999999987654322212 2456677888999999998764443
No 376
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=34.53 E-value=1.1e+02 Score=18.63 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=38.9
Q ss_pred HHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC--CCEEEe
Q 031383 83 AEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK--CPVVIV 154 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~--~pVlvv 154 (160)
+...+++.| ++..... ....+.+.+.+.+.++|+|.+........ ..-.....+.+..+ +++++=
T Consensus 19 ~~~~l~~~G----~~v~~l~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~---~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 19 VAIALRDNG----FEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHM---EAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred HHHHHHHCC----CEEEEcCCCCCHHHHHHHHHHcCCCEEEEecchHhHH---HHHHHHHHHHHhcCCCCeEEEe
Confidence 344466677 3333232 35778888888889999999986543322 11224456666665 555553
No 377
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=34.33 E-value=2e+02 Score=21.61 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecC----ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCG----DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
...+.+.+.+++.+ +.+......+ +..+.+.+.++++++|.||-=..| +-+ .++..+......|++.
T Consensus 36 ~~~~~v~~~L~~~~--i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG-S~i------D~aK~ia~~~~~P~ia 106 (351)
T cd08170 36 LVGAKIEESLAAAG--IDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGG-KTL------DTAKAVADYLGAPVVI 106 (351)
T ss_pred HHHHHHHHHHHhCC--CeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCc-hhh------HHHHHHHHHcCCCEEE
Confidence 45666666777777 6654333434 234566777888999987653221 111 1222232334689999
Q ss_pred ecCCC
Q 031383 154 VKHPE 158 (160)
Q Consensus 154 v~~~~ 158 (160)
||...
T Consensus 107 IPTTa 111 (351)
T cd08170 107 VPTIA 111 (351)
T ss_pred eCCcc
Confidence 98653
No 378
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=34.15 E-value=60 Score=22.31 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=34.1
Q ss_pred ceEEEEEecC-ChhhHHHHHhhh-hC--CCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 94 IHVKRVVGCG-DAKDVICGTVEK-LE--ADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 94 ~~~~~~~~~g-~~~~~i~~~a~~-~~--~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
+.+......| |..+.|++..+. +. +++|++..-.-+++. .. ..+.|-+.+..||++|-.+.+
T Consensus 37 v~~~~itvdG~DaT~~i~~m~~~~~r~~i~~v~LdGit~agFN-ii---D~~~l~~~tg~PVI~V~~~~p 102 (187)
T PF01949_consen 37 VAFGRITVDGMDATEAIIEMVKRLFRPDIRVVMLDGITFAGFN-II---DIERLYEETGLPVIVVMRKEP 102 (187)
T ss_dssp EEEEEE-TT-S-HHHHHHHHHCCTTTTTEEEEEESSSEETTTE-E-----HHHHHHHH---EEEEESS--
T ss_pred EEEEEEEECCchHHHHHHHHHHhcccCcceEEEECCEeEEeeE-Ee---cHHHHHHHHCCCEEEEEEeCC
Confidence 5566677777 889999999874 22 456666533333221 11 457889999999999954443
No 379
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=34.01 E-value=89 Score=22.43 Aligned_cols=13 Identities=31% Similarity=0.256 Sum_probs=5.8
Q ss_pred HhhcCCCCEEEec
Q 031383 143 CAKHVKCPVVIVK 155 (160)
Q Consensus 143 ll~~~~~pVlvv~ 155 (160)
++...++|+++++
T Consensus 68 ~l~~l~~p~~~v~ 80 (267)
T cd07396 68 ILDRLKGPVHHVL 80 (267)
T ss_pred HHHhcCCCEEEec
Confidence 3334444444444
No 380
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=34.01 E-value=2e+02 Score=21.39 Aligned_cols=50 Identities=10% Similarity=-0.017 Sum_probs=30.4
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCc-ccceeeccchhHHHhhcCCCCEEEec
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYG-FIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~-~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..++.+.+++.++|.|.+..+... ...+...-..+..+.+..++||+..-
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 199 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNG 199 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeC
Confidence 346677778889999988643221 11111122345667777889988753
No 381
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=33.87 E-value=79 Score=17.38 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=17.9
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFS 31 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~ 31 (160)
++|++++|.......+.....+....
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~ 73 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKP 73 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhh
Confidence 46888888887777776666655443
No 382
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=33.66 E-value=1.3e+02 Score=19.40 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=43.1
Q ss_pred HHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEE-eecCCccccee-----eccchhHHHhhcCC-CCEEEec
Q 031383 86 VYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVM-GSHGYGFIKRA-----LLGSVSDYCAKHVK-CPVVIVK 155 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvi-g~~~~~~~~~~-----~~gs~~~~ll~~~~-~pVlvv~ 155 (160)
.+++.-+++++.....-| +..-+-.+..++.+||+|+. |+.+.+..... -.|-+.-+|+-+.. +.|.|--
T Consensus 23 ~lk~~~~~~~i~R~TVPGIKdlpvaakrLieeeGCd~Vi~lG~~G~t~~Dk~~~~~aS~GLi~~QlmTn~hiidV~VHE 101 (154)
T COG1731 23 ELKKLLPGIKIKRYTVPGIKDLPVAAKRLIEEEGCDIVIALGWVGPTEKDKYSYLAASIGLIMAQLMTNKHIIDVTVHE 101 (154)
T ss_pred HHHhhCCCCceEEeeCCCcccChHHHHHHHHhcCCcEEEEccCcCcchhhHHHHHHHhhHHHHHHHHcCCeEEEEEeec
Confidence 334344357777777777 77778888889899999875 66665544331 12334455665555 4555543
No 383
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=33.49 E-value=73 Score=23.48 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=39.1
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccce-eeccchhHHHhhcCCCCEEEe
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKR-ALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~-~~~gs~~~~ll~~~~~pVlvv 154 (160)
....++++.|++.+..+|+.-+.+...... -.+......+.+++++||.+-
T Consensus 28 e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValH 79 (287)
T PF01116_consen 28 ETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALH 79 (287)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEee
Confidence 788999999999999998887654333322 345668899999999999774
No 384
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=33.29 E-value=1.5e+02 Score=19.89 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=19.6
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
||++.+-++..+..+-+.+..+.+....+.+|.+..
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~ 37 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFA 37 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEe
Confidence 455566666666666666666666534213444333
No 385
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=33.27 E-value=1.6e+02 Score=20.07 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=23.2
Q ss_pred EEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 8 Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
++|.++|.-+|..++..+.+. + .++..+|+...
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~----g--~~v~~~~~~~~ 33 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDE----G--YEVHAITFDYG 33 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHc----C--CcEEEEEEECC
Confidence 367888888888777666552 4 47888888543
No 386
>PRK09271 flavodoxin; Provisional
Probab=33.11 E-value=1.3e+02 Score=19.77 Aligned_cols=10 Identities=20% Similarity=0.528 Sum_probs=7.4
Q ss_pred CCCEEEEeec
Q 031383 117 EADTLVMGSH 126 (160)
Q Consensus 117 ~~dllvig~~ 126 (160)
++|.|++|+.
T Consensus 51 ~~d~vilgt~ 60 (160)
T PRK09271 51 DYDLYLLGTW 60 (160)
T ss_pred cCCEEEEECc
Confidence 6788888864
No 387
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.10 E-value=1.2e+02 Score=21.56 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=30.8
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
.++.+.+.+.+++.+++....+.+..+.+.-.....+.+.++.||+.--
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~G 204 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASG 204 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEEC
Confidence 4556667778999887754433222222333456778888889998753
No 388
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=32.97 E-value=1.4e+02 Score=19.46 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeecCC-cccceeeccchhHHHhhcCCCC
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHGY-GFIKRALLGSVSDYCAKHVKCP 150 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~~-~~~~~~~~gs~~~~ll~~~~~p 150 (160)
....+.++.+..+.++.| -.+...+..+ ...+.+.+.....++|-++.-.... ......-.......++++.+..
T Consensus 15 ~~~~e~l~~A~~La~~~g--~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~ 92 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALG--GEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPD 92 (164)
T ss_dssp HHHHHHHHHHHHHHHCTT--SEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHHHhhcC--CeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCC
Confidence 556678888888888777 5666555543 3455555556668999777754432 2222223455677788888888
Q ss_pred EEEecCC
Q 031383 151 VVIVKHP 157 (160)
Q Consensus 151 Vlvv~~~ 157 (160)
+++++..
T Consensus 93 lVl~~~t 99 (164)
T PF01012_consen 93 LVLFGST 99 (164)
T ss_dssp EEEEESS
T ss_pred EEEEcCc
Confidence 8888754
No 389
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=32.86 E-value=2.5e+02 Score=22.26 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEee
Q 031383 64 VIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~ 125 (160)
..++.....-+.....++++.+.+.+.| ..+.+--...+..+-|-+.+.+++.+.||.+.
T Consensus 51 ~~~eik~~~lenLd~~l~~~~~~v~~~G--g~vy~A~~aedA~~ii~~iv~~k~~k~vVKsK 110 (459)
T COG1139 51 LAREIKLHVLENLDEYLEQLEENVTRNG--GHVYFAKDAEDAREIIGEIVGEKNGKKVVKSK 110 (459)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHcC--CEEEEeCCHHHHHHHHHHHHhhccCcEEEEec
Confidence 3344444455677778888888888888 55544444346777777889999999999984
No 390
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=32.73 E-value=1.2e+02 Score=21.10 Aligned_cols=41 Identities=7% Similarity=-0.013 Sum_probs=34.2
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
+.-||+-+||.+.+..++..++.-|...+ .-+.++.+=...
T Consensus 105 P~~VlFiTDG~~~~~~~~~~~i~~as~~p--ifwqFVgiG~~~ 145 (200)
T PF10138_consen 105 PALVLFITDGGPDDRRAIEKLIREASDEP--IFWQFVGIGDSN 145 (200)
T ss_pred CeEEEEEecCCccchHHHHHHHHhccCCC--eeEEEEEecCCc
Confidence 45689999999999999999999997766 688888876554
No 391
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=32.71 E-value=1.5e+02 Score=21.26 Aligned_cols=43 Identities=5% Similarity=0.026 Sum_probs=27.5
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..+.+++.+.+.++|+|++|-.. ..-+ . ...+.....+.+|++
T Consensus 145 e~~~i~~~I~~s~~dil~VglG~-PkQE-~----~~~~~~~~~~~~v~~ 187 (243)
T PRK03692 145 QRQALFERIHASGAKIVTVAMGS-PKQE-I----FMRDCRLVYPDALYM 187 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC-cHHH-H----HHHHHHHhCCCCEEE
Confidence 34568899999999999998332 1111 1 235566666777654
No 392
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=32.68 E-value=2.3e+02 Score=21.74 Aligned_cols=55 Identities=7% Similarity=-0.080 Sum_probs=36.4
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..+.| +++-+.+..-...+-+.+ -+|++-+|++..... .-..++..+++||.+=.
T Consensus 134 ~~e~G--lp~atE~ld~~~~~y~~D-----lvs~~aIGARt~esq-------~hre~aSgl~~PVgfKn 188 (353)
T PRK12755 134 LVELG--LPLATEALDPISPQYLGD-----LISWGAIGARTTESQ-------THREMASGLSMPVGFKN 188 (353)
T ss_pred HHHhC--CCEEEEecCcccHHHHHh-----hhhheeeccchhcCH-------HHHHHhcCCCCeeEecC
Confidence 45567 888777776654444444 367888887754332 34678888899998743
No 393
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=32.56 E-value=1.3e+02 Score=19.81 Aligned_cols=13 Identities=8% Similarity=0.406 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhcC
Q 031383 79 VMNRAEAVYRNFQ 91 (160)
Q Consensus 79 ~~~~~~~~~~~~~ 91 (160)
.++++.+.+.+.+
T Consensus 29 ~~~~l~~~~~~~~ 41 (172)
T cd07391 29 TLERLDRLIEEYG 41 (172)
T ss_pred HHHHHHHHHHhcC
Confidence 3333444444333
No 394
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=32.54 E-value=2.1e+02 Score=21.31 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=35.2
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---Ccccceeeccc-hhHHHhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGS-VSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs-~~~~ll~~~~~pVlvv~ 155 (160)
+.+.| +++..... +....+ .. ++|.+++|+.. .+++-.. .|+ ...-+.++.+.||+++-
T Consensus 167 L~~~G--I~vtlI~D--sav~~~---m~--~vd~VivGAd~v~~nG~v~nk-iGT~~~A~~Ak~~~vPv~V~a 229 (310)
T PRK08535 167 LAEYG--IPVTLIVD--SAVRYF---MK--DVDKVVVGADAITANGAVINK-IGTSQIALAAHEARVPFMVAA 229 (310)
T ss_pred HHHCC--CCEEEEeh--hHHHHH---HH--hCCEEEECccEEecCCCEEeH-HhHHHHHHHHHHhCCCEEEec
Confidence 34467 77665554 222233 33 69999999764 3334433 355 34445566779999983
No 395
>PF13362 Toprim_3: Toprim domain
Probab=32.51 E-value=1.1e+02 Score=17.95 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=22.7
Q ss_pred CceEEEEEecCChH--HHHHHHHHHHhcCCCC
Q 031383 4 NERRVVVAVDESEE--SMHALSWCLNNLFSPD 33 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~--s~~al~~a~~~a~~~~ 33 (160)
..++|++..|.... ...++..+.+.+...+
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g 71 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAG 71 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCC
Confidence 57889999998877 6777777766666655
No 396
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=32.46 E-value=1.8e+02 Score=20.36 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=32.8
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..+.+...+.++|.+++......+-.....-....++.+.++.||+..-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~G 204 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALG 204 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEEC
Confidence 4566777778999888876433332222334567888888899998763
No 397
>PRK03670 competence damage-inducible protein A; Provisional
Probab=32.30 E-value=1.9e+02 Score=20.89 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh---hCCCEEEEe
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK---LEADTLVMG 124 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~---~~~dllvig 124 (160)
..+...+.+.| +.+......+|..+.|.+..+. ..+|+||+.
T Consensus 23 ~~la~~L~~~G--~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVItt 67 (252)
T PRK03670 23 AFIAQKLTEKG--YWVRRITTVGDDVEEIKSVVLEILSRKPEVLVIS 67 (252)
T ss_pred HHHHHHHHHCC--CEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEEC
Confidence 34555577788 8887777777777767666443 257988885
No 398
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=32.25 E-value=61 Score=24.60 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
...+.+.+++|+++|++.+. .+|+++|=.
T Consensus 159 r~~~~RIa~~AF~~A~~r~~-k~Vt~v~Ka 187 (344)
T PRK03437 159 AFGVERVVRDAFERAQKRPR-KHLTLVHKT 187 (344)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CeEEEEECC
Confidence 46788999999999988753 468888743
No 399
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=32.24 E-value=2.1e+02 Score=21.10 Aligned_cols=61 Identities=26% Similarity=0.426 Sum_probs=37.9
Q ss_pred HHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhH-HHhhcCCCCEEEecC
Q 031383 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSD-YCAKHVKCPVVIVKH 156 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~-~ll~~~~~pVlvv~~ 156 (160)
.+.+.+ ++++..+.. .... ..+ ++|+|++|+.| .+++-.. .|...- -+.++.+.|+.++-+
T Consensus 176 ~L~~~~--IPvtlvlDS--aVgy---vMe--~vD~VlVGAEGVvEsGGIIN~-iGTyq~~v~Ak~~~kPfYV~AE 240 (313)
T KOG1466|consen 176 ELKKLG--IPVTLVLDS--AVGY---VME--RVDLVLVGAEGVVESGGIINK-IGTYQVAVCAKSMNKPFYVVAE 240 (313)
T ss_pred HHHhcC--CCeEEEehh--hHHH---HHh--hccEEEEccceeeecCceeee-cccchhhhhHHhcCCCeEEEee
Confidence 344566 777766653 2222 233 89999999876 4555444 455444 456666799999854
No 400
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=32.16 E-value=1.6e+02 Score=21.12 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh----hCCCEEEEeecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMGSHG 127 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~----~~~dllvig~~~ 127 (160)
..+.++..+++.| +.-...+..|+..+.+-+.... ..+|+|++-+..
T Consensus 116 ~~~~Ar~~~~~ag--~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK 166 (247)
T PLN02589 116 NYELGLPVIQKAG--VAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADK 166 (247)
T ss_pred HHHHHHHHHHHCC--CCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCH
Confidence 3445566666777 6555667778887777776542 489999997543
No 401
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=32.11 E-value=2.4e+02 Score=21.74 Aligned_cols=24 Identities=4% Similarity=-0.042 Sum_probs=17.2
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.....+++.+++.+.+.+.+|+.+
T Consensus 245 ~~~~~l~~~a~~~g~~~~wigs~~ 268 (403)
T cd06361 245 FHVFLLFNKAIERNINKVWIASDN 268 (403)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECc
Confidence 566677777777777877777554
No 402
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=31.94 E-value=1.1e+02 Score=21.49 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.9
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~ 126 (160)
.++..+-..++..+.|++++|..
T Consensus 101 ~vAKiLk~~vekek~~lVllGKQ 123 (254)
T KOG3180|consen 101 HVAKILKKLVEKEKSDLVLLGKQ 123 (254)
T ss_pred HHHHHHHHHHHhhcCCEEEEccc
Confidence 67778888999999999999954
No 403
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=31.91 E-value=1.9e+02 Score=20.63 Aligned_cols=49 Identities=22% Similarity=0.159 Sum_probs=31.4
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..+.+...+.++|.+++....+.+-...+.-.....+...+++||+..-
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~G 206 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASG 206 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeC
Confidence 4556666778999888854333222222233467788888899998764
No 404
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.89 E-value=2.5e+02 Score=22.00 Aligned_cols=28 Identities=4% Similarity=0.001 Sum_probs=17.2
Q ss_pred cCChHHHHHHHHHHHhc-CCCCCCCeEEEEE
Q 031383 13 DESEESMHALSWCLNNL-FSPDTNNTLVLLY 42 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a-~~~~~~a~l~~l~ 42 (160)
.|.--+..++..|..++ ...+ ..+.++.
T Consensus 230 tGvGKTTt~~kLA~~~~~~~~g--~~V~li~ 258 (424)
T PRK05703 230 TGVGKTTTLAKLAARYALLYGK--KKVALIT 258 (424)
T ss_pred CCCCHHHHHHHHHHHHHHhcCC--CeEEEEE
Confidence 55555667777887776 3334 3666654
No 405
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=31.87 E-value=53 Score=22.79 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=23.8
Q ss_pred CEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 119 DTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 119 dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
=+.|+|..|.+. ..+.+...+.++++...+++|+-++.
T Consensus 25 H~~I~G~TGsGK--S~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 25 HIAIFGTTGSGK--SNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred eEEEECCCCCCH--HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 456777666543 23456666777766667777776544
No 406
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=31.79 E-value=1.9e+02 Score=20.61 Aligned_cols=73 Identities=15% Similarity=0.055 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
...+++.+...+++.| ..+......++.. ..+++.+...++|-+|+.......... ..+ .+.+.++||+.
T Consensus 14 ~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~-----~l~-~l~~~~ipvV~ 85 (288)
T cd01538 14 WIRDRPNFEAALKELG--AEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALAS-----AVE-KAADAGIPVIA 85 (288)
T ss_pred HHHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHH-----HHH-HHHHCCCCEEE
Confidence 3455566666667777 5554443333332 355555566789988886432221111 122 34456789988
Q ss_pred ecC
Q 031383 154 VKH 156 (160)
Q Consensus 154 v~~ 156 (160)
+-.
T Consensus 86 ~~~ 88 (288)
T cd01538 86 YDR 88 (288)
T ss_pred ECC
Confidence 843
No 407
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=31.72 E-value=2.2e+02 Score=21.31 Aligned_cols=61 Identities=18% Similarity=0.070 Sum_probs=31.8
Q ss_pred ceEEEEEecCChh--hHHHHHhhhhCCCEEEEeec---CCcccce----eeccchhHHHhhcCCCCEEEe
Q 031383 94 IHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSH---GYGFIKR----ALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 94 ~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~---~~~~~~~----~~~gs~~~~ll~~~~~pVlvv 154 (160)
+.+-..+...+.. ..+.+.+++.++|.|-+... ....... ..+-.+.+.+...+++||++=
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vK 171 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVK 171 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEE
Confidence 4444444333332 35566666678999999532 1111111 012234466667778998763
No 408
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=31.61 E-value=1.4e+02 Score=20.69 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=29.0
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.++.+...+.+++.+++-...+.+-..-.--.....+.+.+++||+.-
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~ 196 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIAS 196 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEe
Confidence 566777777889955554333322211122345678888888998764
No 409
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=31.55 E-value=2e+02 Score=20.79 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
++-+..+.+.+++.| +.+-+.+..-...+.+. +. +|++=+|+....... ..+ -+.++..||++=..
T Consensus 75 ~~gl~~l~~~~~~~G--l~~~t~~~d~~~~~~l~----~~-~d~lkI~s~~~~n~~------LL~-~~a~~gkPVilk~G 140 (260)
T TIGR01361 75 EEGLKLLRRAADEHG--LPVVTEVMDPRDVEIVA----EY-ADILQIGARNMQNFE------LLK-EVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHHHHHHHHHhC--CCEEEeeCChhhHHHHH----hh-CCEEEECcccccCHH------HHH-HHhcCCCcEEEeCC
Confidence 344555666778888 88777766655555444 33 689999877544432 222 23445678877554
Q ss_pred C
Q 031383 157 P 157 (160)
Q Consensus 157 ~ 157 (160)
.
T Consensus 141 ~ 141 (260)
T TIGR01361 141 M 141 (260)
T ss_pred C
Confidence 3
No 410
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=31.55 E-value=83 Score=22.88 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=29.2
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
-...+...++..++.||||...- +...... +...+.+...+|++++...
T Consensus 136 Gin~VtklIekkKAkLVIIA~DV-sP~t~kk---~LP~LC~k~~VPY~iv~sK 184 (266)
T PTZ00365 136 GLNHVTDLVEYKKAKLVVIAHDV-DPIELVC---FLPALCRKKEVPYCIIKGK 184 (266)
T ss_pred hhHHHHHHHHhCCccEEEEeCCC-CHHHHHH---HHHHHHhccCCCEEEECCH
Confidence 34566677777889999997542 2222111 1234556667788777653
No 411
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=31.52 E-value=58 Score=24.37 Aligned_cols=28 Identities=4% Similarity=0.025 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
..|.+.++||++.|+..+. ..++++|=.
T Consensus 178 ~AS~Ria~~AF~yAr~~~R-~~vtvvHKa 205 (365)
T KOG0785|consen 178 AASRRIAEYAFEYARQNGR-KRVTVVHKA 205 (365)
T ss_pred HHHHHHHHHHHHHHHHcCC-CceEEEehh
Confidence 4578899999999998887 788988854
No 412
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=31.50 E-value=67 Score=24.76 Aligned_cols=38 Identities=18% Similarity=0.065 Sum_probs=27.7
Q ss_pred HHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 86 VYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.+.+.| ++.+++-| -..+++++.|.++++.|++.|.+.
T Consensus 348 ~Aa~~G----V~aIiQPGGSiRD~evI~aane~giaMvfTg~Rh 387 (390)
T PRK07106 348 RAAKSG----VKYIAQPGGSIRDDNVIETCNKYGMTMAFTGVRL 387 (390)
T ss_pred HHHHcC----CEEEECCCCCCCcHHHHHHHHHhCCEEEECCCCC
Confidence 344455 45555555 466699999999999999998664
No 413
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=31.48 E-value=1.1e+02 Score=22.29 Aligned_cols=69 Identities=23% Similarity=0.364 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec------CCcccceee-ccc-------hhHHHh
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH------GYGFIKRAL-LGS-------VSDYCA 144 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~------~~~~~~~~~-~gs-------~~~~ll 144 (160)
.+++++...++.. +.+..|--.--..+.++..++|+|++-.. +++.+..++ +|+ .++.++
T Consensus 3 il~~l~~~i~~~~------pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiL 76 (268)
T PF09370_consen 3 ILDRLRAQIKAGK------PIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREIL 76 (268)
T ss_dssp HHHHHHHHHHTT--------EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhCCC------ceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhh
Confidence 4455555544333 33333333334457788889999999643 345454433 443 245666
Q ss_pred hcCC-CCEEE
Q 031383 145 KHVK-CPVVI 153 (160)
Q Consensus 145 ~~~~-~pVlv 153 (160)
-..+ .||+.
T Consensus 77 p~v~~tPVia 86 (268)
T PF09370_consen 77 PVVKDTPVIA 86 (268)
T ss_dssp GG-SSS-EEE
T ss_pred hhccCCCEEE
Confidence 6666 78874
No 414
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=31.40 E-value=1.8e+02 Score=20.61 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecC
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.+..+.++..++++| +.-...... |+..+.+.+ -....+|+|+|-+..
T Consensus 94 ~e~~~~A~~n~~~ag--~~~~i~~~~~gdal~~l~~-~~~~~fDliFIDadK 142 (219)
T COG4122 94 EERAEIARENLAEAG--VDDRIELLLGGDALDVLSR-LLDGSFDLVFIDADK 142 (219)
T ss_pred HHHHHHHHHHHHHcC--CcceEEEEecCcHHHHHHh-ccCCCccEEEEeCCh
Confidence 445566677777788 655555555 588888887 333599999997544
No 415
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=31.32 E-value=1.5e+02 Score=21.33 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCcceEEEEE-ecC----ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVV-GCG----DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~-~~g----~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
.-+.+++.+++.+ +.+.... ..+ +....+.+.++..++|++|-=..| ..-.++..+..+.++|.+.
T Consensus 34 ~g~~v~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG-------~i~D~~K~~A~~~~~p~is 104 (250)
T PF13685_consen 34 AGEKVEESLKSAG--IEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGG-------TIIDIAKYAAFELGIPFIS 104 (250)
T ss_dssp HHHHHHHHHHTTT---EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESH-------HHHHHHHHHHHHHT--EEE
T ss_pred HHHHHHHHHHHcC--CeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCc-------HHHHHHHHHHHhcCCCEEE
Confidence 4455666677777 6665332 112 223344555555577755532221 1234678888899999999
Q ss_pred ecCCCC
Q 031383 154 VKHPEE 159 (160)
Q Consensus 154 v~~~~~ 159 (160)
||....
T Consensus 105 VPTa~S 110 (250)
T PF13685_consen 105 VPTAAS 110 (250)
T ss_dssp EES--S
T ss_pred eccccc
Confidence 986543
No 416
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=31.20 E-value=1.7e+02 Score=19.97 Aligned_cols=10 Identities=40% Similarity=0.720 Sum_probs=5.2
Q ss_pred CEEEEeecCC
Q 031383 119 DTLVMGSHGY 128 (160)
Q Consensus 119 dllvig~~~~ 128 (160)
...+.|.+..
T Consensus 66 v~~v~GNHD~ 75 (223)
T cd07385 66 VYAVLGNHDY 75 (223)
T ss_pred EEEECCCccc
Confidence 3455565553
No 417
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=31.14 E-value=1.4e+02 Score=18.96 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecC-----------------ChhhHHHHHhhhhCCCEEEEeecCCc
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCG-----------------DAKDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------------~~~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
.....+.+.+.+.+++.+ +.++..-... +..+.+.+... .+|.+|+++.-..
T Consensus 14 ~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iI~~sP~y~ 82 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLK--EADGIIFASPVYN 82 (152)
T ss_dssp SHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHH--HSSEEEEEEEEBT
T ss_pred CHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhcee--cCCeEEEeecEEc
Confidence 345556666777777667 6666654432 23345555555 8999999976433
No 418
>PRK07667 uridine kinase; Provisional
Probab=31.13 E-value=95 Score=21.04 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=22.2
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.|++...+++.+-+++|-.|..+...-.+.......+....+|+.++.
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~ 52 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFH 52 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3445555555555555554444443332223333333333445655553
No 419
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.13 E-value=1.3e+02 Score=22.22 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=33.3
Q ss_pred ChhhHHHHHhhhhCCCE-----EEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 104 DAKDVICGTVEKLEADT-----LVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dl-----lvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
....++++..+.+++++ +|+|++. +.|.-...++.+-.+.|.+++.+..
T Consensus 141 cTp~avi~ll~~y~i~l~Gk~vvViGrS~-------iVGkPla~lL~~~~atVt~chs~T~ 194 (284)
T PRK14177 141 CTPYGMVLLLKEYGIDVTGKNAVVVGRSP-------ILGKPMAMLLTEMNATVTLCHSKTQ 194 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCC-------cchHHHHHHHHHCCCEEEEeCCCCC
Confidence 35567777777776644 8888553 3455666677777788888876543
No 420
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=30.96 E-value=67 Score=21.75 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.7
Q ss_pred EEEEEecCChHHHHHHHHHHHhc
Q 031383 7 RVVVAVDESEESMHALSWCLNNL 29 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a 29 (160)
+|++.+|+...+.++++.|..-.
T Consensus 1 kVIlvTDGD~~A~ravE~aa~~i 23 (180)
T PF14097_consen 1 KVILVTDGDEYAKRAVEIAAKNI 23 (180)
T ss_pred CEEEEECChHHHHHHHHHHHHHh
Confidence 57888999999999999988763
No 421
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=30.91 E-value=96 Score=20.71 Aligned_cols=47 Identities=17% Similarity=0.047 Sum_probs=24.7
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
...+..+-+.++|++|+..-++-...+.=+...... .-...+|||+.
T Consensus 83 ~~~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~-A~~~giPVLt~ 129 (159)
T PF10649_consen 83 SAALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAA-ALAAGIPVLTA 129 (159)
T ss_pred HHHHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHH-HHHCCCCEEEE
Confidence 344555555689999998665443333211111111 22335788875
No 422
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=30.87 E-value=1.5e+02 Score=20.00 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=27.0
Q ss_pred EEEEEecC------ChhhHHHHHhhhhCCCEEEEeecCCcccc
Q 031383 96 VKRVVGCG------DAKDVICGTVEKLEADTLVMGSHGYGFIK 132 (160)
Q Consensus 96 ~~~~~~~g------~~~~~i~~~a~~~~~dllvig~~~~~~~~ 132 (160)
.+..+..| .....+...+++.++|++|-|+.......
T Consensus 82 ~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH~p~~~ 124 (172)
T COG0622 82 VKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTHKPVAE 124 (172)
T ss_pred EEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCCcccEE
Confidence 44556666 35667778899999999999976655443
No 423
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=30.68 E-value=99 Score=23.16 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=29.1
Q ss_pred CCCEEEEeecC---CcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 117 EADTLVMGSHG---YGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 117 ~~dllvig~~~---~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
..+.||+|++. .+++...--+..+....++-..||+++-+
T Consensus 230 rVnKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp 272 (353)
T KOG1465|consen 230 RVNKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLAP 272 (353)
T ss_pred hcceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEecc
Confidence 78899999874 55555554555667777888899999853
No 424
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.62 E-value=1.6e+02 Score=19.36 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 17 ESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 17 ~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
.+..|++.|++.....+ .++.++.+++..
T Consensus 3 ~aA~Al~eal~~~~~~~--~~v~v~D~~~~~ 31 (169)
T PF06925_consen 3 SAARALAEALERRRGPD--AEVEVVDFLEEA 31 (169)
T ss_pred HHHHHHHHHHHhhcCCC--CEEEEEehHHhh
Confidence 35567777777653334 688888877643
No 425
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=30.61 E-value=1.4e+02 Score=18.79 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=21.9
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhh--hCCCEEEEe
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dllvig 124 (160)
+...+++.| .++.......|-.+.|.+..+. ..+|+||+.
T Consensus 24 l~~~l~~~G--~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dlvitt 65 (133)
T cd00758 24 LEALLEDLG--CEVIYAGVVPDDADSIRAALIEASREADLVLTT 65 (133)
T ss_pred HHHHHHHCC--CEEEEeeecCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 344456677 5555554445544444444322 248998885
No 426
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=30.52 E-value=2.2e+02 Score=20.97 Aligned_cols=55 Identities=7% Similarity=0.149 Sum_probs=41.1
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccce-eeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKR-ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~-~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....++++.|++.+..+|+.-+.+.-.... ..+......+.+++++||.+-=++.
T Consensus 27 e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg 82 (282)
T TIGR01858 27 ETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHH 82 (282)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 788999999999999999987654332211 2355688889999999998864443
No 427
>PRK09222 isocitrate dehydrogenase; Validated
Probab=30.45 E-value=69 Score=25.57 Aligned_cols=28 Identities=7% Similarity=0.056 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEE
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v 43 (160)
...+.+.+++|+++|+..+. .+|+++|=
T Consensus 148 r~~~eRI~r~AFe~A~~r~r-kkVt~v~K 175 (482)
T PRK09222 148 RPGSEKIIRYAFEYARANGR-KKVTCLTK 175 (482)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CeEEEEEC
Confidence 36788999999999998863 36887773
No 428
>PTZ00323 NAD+ synthase; Provisional
Probab=30.25 E-value=2.3e+02 Score=21.03 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=27.4
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
.++++|+++|.-+|.-++..|.+.....+. ....++.+..+
T Consensus 46 ~~~vVVglSGGVDSav~aaLa~~alg~~~~-~~~~~~~v~~P 86 (294)
T PTZ00323 46 LKGCVTSVSGGIDSAVVLALCARAMRMPNS-PIQKNVGLCQP 86 (294)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHhccccC-CceEEEEEECC
Confidence 678999999998888888777775544221 12445555544
No 429
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=30.20 E-value=1.3e+02 Score=18.32 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=25.2
Q ss_pred hHHHHHhhhh--CCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 107 DVICGTVEKL--EADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 107 ~~i~~~a~~~--~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
.+=++..... ++|+||+|+... ..+.......-+++..+.|-+++
T Consensus 41 ~~~l~~l~~~~p~pe~liiGtG~~----~~~~~~~~~~~l~~~GI~ve~m~ 87 (110)
T PF04430_consen 41 PEDLEELLELEPKPEVLIIGTGKR----QLFLPPELREYLRKKGIGVEVMD 87 (110)
T ss_dssp THHHHHHHCTCCS-SEEEEEETTS-----SECTHHHHHHHHTTT-EEEEE-
T ss_pred HHHHHHHHhccCCCcEEEEccCCc----cccCCHHHHHHHHHcCCeEEEEC
Confidence 3334444444 899999996433 23455556666677777776654
No 430
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=30.16 E-value=2.6e+02 Score=21.69 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=24.7
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLP 48 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~ 48 (160)
.++|+-+++.=+|.-|. +++-+.+ +++..+|...++.
T Consensus 176 Gk~l~LlSGGIDSPVA~----~l~mkRG--~~v~~v~f~~~p~ 212 (383)
T COG0301 176 GKVLLLLSGGIDSPVAA----WLMMKRG--VEVIPVHFGNPPY 212 (383)
T ss_pred CcEEEEEeCCCChHHHH----HHHHhcC--CEEEEEEEcCCCC
Confidence 56777777766666443 4444557 8999999965543
No 431
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=30.06 E-value=2e+02 Score=20.29 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh---hCCCEEEEeec
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK---LEADTLVMGSH 126 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~---~~~dllvig~~ 126 (160)
+..+.+++.+++.+ +.-...+..|+..+.+-+.... ..+|++++...
T Consensus 104 ~~~~~A~~n~~~~g--l~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 104 EAYEVGLEFIKKAG--VDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHHHHHHHHHHcC--CCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 34445555666666 5544566777777766555432 47999999753
No 432
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=30.00 E-value=1.3e+02 Score=20.93 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=7.9
Q ss_pred HHhhcCCCCEEEecC
Q 031383 142 YCAKHVKCPVVIVKH 156 (160)
Q Consensus 142 ~ll~~~~~pVlvv~~ 156 (160)
.++.+.++|++.++.
T Consensus 64 ~~l~~~~~p~~~v~G 78 (240)
T cd07402 64 ELLAALPIPVYLLPG 78 (240)
T ss_pred HHHhhcCCCEEEeCC
Confidence 344444566666554
No 433
>PRK05595 replicative DNA helicase; Provisional
Probab=29.75 E-value=1.5e+02 Score=23.28 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=26.1
Q ss_pred HHHhhhhCCCEEEEeec-----CCc-ccceeeccchhH---HHhhcCCCCEEEec
Q 031383 110 CGTVEKLEADTLVMGSH-----GYG-FIKRALLGSVSD---YCAKHVKCPVVIVK 155 (160)
Q Consensus 110 ~~~a~~~~~dllvig~~-----~~~-~~~~~~~gs~~~---~ll~~~~~pVlvv~ 155 (160)
.+...++++|+||+-.= ... .-...-++.+++ .+.++.+|||+++-
T Consensus 304 r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~ls 358 (444)
T PRK05595 304 RRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALS 358 (444)
T ss_pred HHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEee
Confidence 34444568999998531 111 111112344444 45888899999983
No 434
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=29.74 E-value=2.4e+02 Score=22.85 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCE--EEEeecCCcc
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADT--LVMGSHGYGF 130 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dl--lvig~~~~~~ 130 (160)
..+.+++.+++.+++.+ +-.+-....+-+.++.|.++....+.+. .++|...+..
T Consensus 349 Kl~~l~eilke~~~k~~-~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~ 405 (542)
T COG1111 349 KLEKLREILKEQLEKNG-DSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREG 405 (542)
T ss_pred cHHHHHHHHHHHHhcCC-CceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccc
Confidence 44556666666665555 3445555555699999999999999998 7899544433
No 435
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=29.67 E-value=1.2e+02 Score=21.88 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=30.7
Q ss_pred CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 103 GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 103 g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
.+..+.+.+..+...+|-||+..+..+.-... ......-+.++.|||+
T Consensus 163 ~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~---~el~~a~~~~~~pvlv 210 (263)
T COG0434 163 RSLEEAVKDTVERGLADAVIVTGSRTGSPPDL---EELKLAKEAVDTPVLV 210 (263)
T ss_pred cCHHHHHHHHHHccCCCEEEEecccCCCCCCH---HHHHHHHhccCCCEEE
Confidence 37777888888889999999975543322111 1234455566688876
No 436
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=29.66 E-value=2.3e+02 Score=21.59 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=39.7
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec-CCcccce----------------eeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH-GYGFIKR----------------ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~-~~~~~~~----------------~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....++++.|++.+..+|+..+. +...... ..+...+..+..++++||.+-=++.
T Consensus 24 e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~ 95 (340)
T cd00453 24 DSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHC 95 (340)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 67889999999999999998766 2211111 2355677888899999998865443
No 437
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=29.62 E-value=2.4e+02 Score=20.97 Aligned_cols=59 Identities=22% Similarity=0.457 Sum_probs=35.3
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---Ccccceeeccch-hHHHhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSV-SDYCAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~-~~~ll~~~~~pVlvv~ 155 (160)
+.+.| +++..... +....+ +. ++|.+++|+.. .+++-.. .|+. ..-+.++..+||+++-
T Consensus 162 L~~~g--I~vtlI~D--sa~~~~---m~--~vd~VivGad~v~~nG~v~nk-iGT~~lA~~Ak~~~vPv~V~a 224 (301)
T TIGR00511 162 LRDYG--IPVTLIVD--SAVRYF---MK--EVDHVVVGADAITANGALINK-IGTSQLALAAREARVPFMVAA 224 (301)
T ss_pred HHHCC--CCEEEEeh--hHHHHH---HH--hCCEEEECccEEecCCCEEEH-HhHHHHHHHHHHhCCCEEEEc
Confidence 34567 77766544 223233 33 69999999764 3334433 3553 4445566679999983
No 438
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=29.50 E-value=2.6e+02 Score=21.42 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=39.9
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCccc-c---eee------------ccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFI-K---RAL------------LGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~-~---~~~------------~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
....++++.|++.+..+|+..+.+.... . -.. +......+.+++++||.+-=++.
T Consensus 32 e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg 102 (350)
T PRK09197 32 DSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHC 102 (350)
T ss_pred HHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 7889999999999999999876543221 1 011 44677888999999998764443
No 439
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=29.50 E-value=99 Score=24.55 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=13.8
Q ss_pred CChhhHHHHHhh-hhCCCEEEEeecC
Q 031383 103 GDAKDVICGTVE-KLEADTLVMGSHG 127 (160)
Q Consensus 103 g~~~~~i~~~a~-~~~~dllvig~~~ 127 (160)
|+-.+.+++.++ +.++.++.+.+.+
T Consensus 135 GdDi~~v~~~~~~~~~~pvi~v~t~G 160 (475)
T PRK14478 135 GDDIDAVCKRAAEKFGIPVIPVNSPG 160 (475)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEECCC
Confidence 555555554443 4566677665544
No 440
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=29.50 E-value=2e+02 Score=20.21 Aligned_cols=89 Identities=21% Similarity=0.255 Sum_probs=41.9
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
++++-+.|..+|.-|+..|.+. .. -..+++..+.......+ +... .+.+...
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~---~~---v~~L~t~~~~~~~s~~~-----H~~~-----------------~~~~~~q 53 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ---HE---VVCLLTMVPEEEDSYMF-----HGVN-----------------IELIEAQ 53 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT----E---EEEEEEEEESTTT-SSS------STT-----------------GTCHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHh---CC---ccEEEEeccCCCCcccc-----cccC-----------------HHHHHHH
Confidence 4667789999999999888776 22 44556666543321111 1110 0111222
Q ss_pred HHhcCCcceEEEEEecC---ChhhHHHHHhhhhCCCEEEEee
Q 031383 87 YRNFQNNIHVKRVVGCG---DAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g---~~~~~i~~~a~~~~~dllvig~ 125 (160)
++..| ++.......| +-.+.+.+..++.+++.+|-|.
T Consensus 54 A~alg--ipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~Gd 93 (218)
T PF01902_consen 54 AEALG--IPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGD 93 (218)
T ss_dssp HHHHT----EEEEEE---CCCHHHHHHHHHCTC--SEEE--T
T ss_pred HHHCC--CCEEEEEccCccchhhHHHHHHHHHcCCCEEEECc
Confidence 23344 5555444443 4445666767778888888884
No 441
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=29.49 E-value=94 Score=22.35 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=25.7
Q ss_pred HHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 111 GTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 111 ~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
...++.++|.||.=.+|..+.... -...+...+||++++.+.
T Consensus 188 al~~~~~i~~lVtK~SG~~g~~eK------i~AA~~lgi~vivI~RP~ 229 (249)
T PF02571_consen 188 ALFRQYGIDVLVTKESGGSGFDEK------IEAARELGIPVIVIKRPP 229 (249)
T ss_pred HHHHHcCCCEEEEcCCCchhhHHH------HHHHHHcCCeEEEEeCCC
Confidence 456677888888754443332222 235667788888885543
No 442
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=29.46 E-value=2e+02 Score=19.96 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..++...+...+++.| ..+.......+.. ...++.....++|-+|++........ .. -..+.+.++|++.
T Consensus 14 ~~~~~~~i~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~-----~~-l~~l~~~~ipvv~ 85 (268)
T cd06323 14 FVTLKDGAQKEAKELG--YELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVV-----PA-VKAANEAGIPVFT 85 (268)
T ss_pred HHHHHHHHHHHHHHcC--ceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHH-----HH-HHHHHHCCCcEEE
Confidence 3445555566666667 5554433323333 24555556668999888643211000 01 1234566889988
Q ss_pred ecC
Q 031383 154 VKH 156 (160)
Q Consensus 154 v~~ 156 (160)
+-.
T Consensus 86 ~~~ 88 (268)
T cd06323 86 IDR 88 (268)
T ss_pred Ecc
Confidence 843
No 443
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=29.44 E-value=2.3e+02 Score=21.00 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=21.1
Q ss_pred EEEecCChhhHHHHHh---hhhCCCEEEEeecC
Q 031383 98 RVVGCGDAKDVICGTV---EKLEADTLVMGSHG 127 (160)
Q Consensus 98 ~~~~~g~~~~~i~~~a---~~~~~dllvig~~~ 127 (160)
..+.-|...++|.+.. +++++|+|.+|..=
T Consensus 219 iMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYl 251 (306)
T COG0320 219 LMVGLGETDEEVIEVMDDLRSAGVDILTIGQYL 251 (306)
T ss_pred eeeecCCcHHHHHHHHHHHHHcCCCEEEecccc
Confidence 3455566677777664 45899999999753
No 444
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=29.32 E-value=2.7e+02 Score=22.29 Aligned_cols=90 Identities=19% Similarity=0.136 Sum_probs=53.8
Q ss_pred EEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (160)
Q Consensus 7 ~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
..+|++.++ ...++.|..+... + ..++++|-.+..... .......+.++..
T Consensus 214 ~~vV~vG~G---~ig~Evaa~l~~~-~--~~VT~V~~e~~~~~~-----------------------lf~~~i~~~~~~y 264 (478)
T KOG1336|consen 214 GKVVCVGGG---FIGMEVAAALVSK-A--KSVTVVFPEPWLLPR-----------------------LFGPSIGQFYEDY 264 (478)
T ss_pred ceEEEECch---HHHHHHHHHHHhc-C--ceEEEEccCccchhh-----------------------hhhHHHHHHHHHH
Confidence 344555443 3577777777665 4 488888866544321 3334455566677
Q ss_pred HHhcCCcceEEEEEec--------CChhhHHHHHhhhhCCCEEEEeecC
Q 031383 87 YRNFQNNIHVKRVVGC--------GDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~--------g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
+++.+ +++...... |......+.--+...+|+||+|...
T Consensus 265 ~e~kg--Vk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~ 311 (478)
T KOG1336|consen 265 YENKG--VKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGI 311 (478)
T ss_pred HHhcC--eEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecc
Confidence 77788 665433221 2334445555667899999999543
No 445
>PRK09932 glycerate kinase II; Provisional
Probab=29.25 E-value=87 Score=24.20 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=23.1
Q ss_pred hCCCEEEEeecCCcccceeeccchhHHHhh---cCCCCEEEec
Q 031383 116 LEADTLVMGSHGYGFIKRALLGSVSDYCAK---HVKCPVVIVK 155 (160)
Q Consensus 116 ~~~dllvig~~~~~~~~~~~~gs~~~~ll~---~~~~pVlvv~ 155 (160)
.++|+||.|- ++-.. +-+.|.+.-.+.+ +..+||+++-
T Consensus 283 ~~ADlVITGE-G~~D~-Qt~~GK~p~~Va~~A~~~~~Pvi~i~ 323 (381)
T PRK09932 283 QGAALVITGE-GRIDS-QTAGGKAPLGVASVAKQFNVPVIGIA 323 (381)
T ss_pred ccCCEEEECC-Ccccc-cccCCccHHHHHHHHHHcCCCEEEEe
Confidence 4899999983 22221 2345665555544 4469999983
No 446
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=29.18 E-value=71 Score=25.42 Aligned_cols=29 Identities=7% Similarity=0.022 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEEE
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~v 43 (160)
....+.+.+++|+++|++.+. .+|+++|=
T Consensus 143 Tr~g~eRI~r~AFe~A~~r~r-kkVT~v~K 171 (473)
T TIGR02924 143 TRSGSEKICRYAFEYARKHNR-KKVTCLTK 171 (473)
T ss_pred CHHHHHHHHHHHHHHHHhcCC-CeEEEEEC
Confidence 346788999999999998863 46888773
No 447
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=29.14 E-value=1.7e+02 Score=19.05 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=59.0
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
+...+|++.++.++ ...+++++..+..... ...+ +-.. .
T Consensus 2 ~~~~~v~lsv~d~d-K~~l~~~a~~l~~ll~---Gf~l---~AT~----------------------------------g 40 (142)
T PRK05234 2 PARKRIALIAHDHK-KDDLVAWVKAHKDLLE---QHEL---YATG----------------------------------T 40 (142)
T ss_pred CcCcEEEEEEeccc-hHHHHHHHHHHHHHhc---CCEE---EEeC----------------------------------h
Confidence 35678888887776 3557788888766532 2222 2111 1
Q ss_pred HHHHHHhc-CCcceEEEEEecCC--hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 83 AEAVYRNF-QNNIHVKRVVGCGD--AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~g~--~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..+.+++. | +.++.++ .+. -...|.+..++..+|+||--....+.-...--|...++..-..++|++.
T Consensus 41 Ta~~L~~~~G--i~v~~vi-~~~~gg~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T 111 (142)
T PRK05234 41 TGGLIQEATG--LDVTRLL-SGPLGGDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVAT 111 (142)
T ss_pred HHHHHHhccC--CeeEEEE-cCCCCCchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEc
Confidence 11223344 6 7777663 331 2367999999999999987542111111111233445555555677653
No 448
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.12 E-value=2.1e+02 Score=20.20 Aligned_cols=71 Identities=15% Similarity=0.091 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
.+.+.+.+.+++.| ..+.......+.. ...++.....++|-||+........ ....++ +.....||+++-
T Consensus 16 ~~~~gi~~~~~~~G--~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~-----~~~i~~-~~~~~iPvV~~~ 87 (272)
T cd06313 16 QGKQAADEAGKLLG--VDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTL-----TEAVQK-AIARGIPVIDMG 87 (272)
T ss_pred HHHHHHHHHHHHcC--CEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHh-----HHHHHH-HHHCCCcEEEeC
Confidence 35555556666677 5555443333333 2455556678999999954321111 112233 344578998884
Q ss_pred C
Q 031383 156 H 156 (160)
Q Consensus 156 ~ 156 (160)
.
T Consensus 88 ~ 88 (272)
T cd06313 88 T 88 (272)
T ss_pred C
Confidence 3
No 449
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=29.10 E-value=1.7e+02 Score=19.05 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=23.3
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhh----hCCCEEEEe
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~----~~~dllvig 124 (160)
+...+++.| .++.......|..+.|.+..++ ..+|+||+.
T Consensus 25 l~~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVitt 68 (152)
T cd00886 25 LVELLEEAG--HEVVAYEIVPDDKDEIREALIEWADEDGVDLILTT 68 (152)
T ss_pred HHHHHHHcC--CeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 345566777 6555554445544545444332 279999985
No 450
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=29.04 E-value=2.4e+02 Score=20.87 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=38.6
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCccc-c-eeeccchhHHHhhcC--CCCEEEecCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFI-K-RALLGSVSDYCAKHV--KCPVVIVKHP 157 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~-~-~~~~gs~~~~ll~~~--~~pVlvv~~~ 157 (160)
....++++.|++.+..+|+.-+.+.... . ...+......+..+. +.||.+-=++
T Consensus 29 e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH 86 (293)
T PRK07315 29 EWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDH 86 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 7888999999999999999876653322 1 123456677888888 6698875433
No 451
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=28.96 E-value=1.9e+02 Score=19.70 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=32.2
Q ss_pred ceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeecCCc---ccceeeccchhHHHhhcCC-CCEEEec
Q 031383 94 IHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHGYG---FIKRALLGSVSDYCAKHVK-CPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~~~---~~~~~~~gs~~~~ll~~~~-~pVlvv~ 155 (160)
.++--.=..| ....++.++..+.++|++++-.-... .+... .....+.|-..-| +||++|-
T Consensus 34 ~~~iNLGfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~-~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 34 LDVINLGFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRER-LDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp -EEEEEE-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHH-HHHHHHHHHTT-SSS-EEEEE
T ss_pred CCeEeeeecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHH-HHHHHHHHHHhCCCCCEEEEe
Confidence 4444444444 67778999999999999999754321 11111 1224455555554 9999995
No 452
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=28.82 E-value=1.9e+02 Score=20.56 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=32.8
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccc--hhH-----HHhhcCCCCEEEecCCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGS--VSD-----YCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs--~~~-----~ll~~~~~pVlvv~~~~~ 159 (160)
+....+++.+.+..+|++|++..=. -+-+|. .+. .-+.....||+.+|...+
T Consensus 17 ~~~~k~~~~~~~~~~D~lviaGDlt----~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD 75 (226)
T COG2129 17 DSLKKLLNAAADIRADLLVIAGDLT----YFHFGPKEVAEELNKLEALKELGIPVLAVPGNCD 75 (226)
T ss_pred HHHHHHHHHHhhccCCEEEEeccee----hhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCC
Confidence 4457888999999999999984321 111222 112 234556789999986543
No 453
>PRK07369 dihydroorotase; Provisional
Probab=28.65 E-value=1.6e+02 Score=22.90 Aligned_cols=93 Identities=11% Similarity=0.142 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCc
Q 031383 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYA----SESVNSVMNRAEAVYRNFQNN 93 (160)
Q Consensus 18 s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 93 (160)
...++..++.+|+..+ +++++.|+....... ........- -+..-..+-.-.+.+..++..
T Consensus 212 E~~av~r~~~la~~~~--~~~hi~HvSs~~~~~-------------~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~ 276 (418)
T PRK07369 212 ETTALAALLELVAAIG--TPVHLMRISTARSVE-------------LIAQAKARGLPITASTTWMHLLLDTEALASYDPN 276 (418)
T ss_pred HHHHHHHHHHHHHHHC--CcEEEEeCCCHHHHH-------------HHHHHHHcCCCeEEEecHHHHhccHHHHhccCCC
Confidence 4557888999999998 899999998754320 011000000 001111222122233333423
Q ss_pred ceEEEEEecCChhhHHHHHhhhhCCCEEEEee
Q 031383 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~ 125 (160)
.++.+-.+...-.++|.+..++..+|+|.--+
T Consensus 277 ~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDH 308 (418)
T PRK07369 277 LRLDPPLGNPSDRQALIEGVRTGVIDAIAIDH 308 (418)
T ss_pred cEECCCCCCHHHHHHHHHHHhcCCCCEEEcCC
Confidence 45556566556778999999988899655543
No 454
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=28.60 E-value=2.3e+02 Score=20.53 Aligned_cols=28 Identities=4% Similarity=-0.059 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
+.+....+.|+.+|+..+ .+..=|.-++
T Consensus 92 ~~aleiM~KaI~LA~dLG--IRtIQLAGYD 119 (287)
T COG3623 92 QQALEIMEKAIQLAQDLG--IRTIQLAGYD 119 (287)
T ss_pred HHHHHHHHHHHHHHHHhC--ceeEeeccce
Confidence 346677889999999877 4444444333
No 455
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=28.54 E-value=2.5e+02 Score=20.88 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=26.2
Q ss_pred HHHhhhhCCCEEEEeecCCccc-ceeeccchhHHHhhcCCCCEEEe
Q 031383 110 CGTVEKLEADTLVMGSHGYGFI-KRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 110 ~~~a~~~~~dllvig~~~~~~~-~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+.+.+.++|.|++-.+..++- ...-.-.....+.+..++||+.-
T Consensus 122 a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaa 167 (307)
T TIGR03151 122 AKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAA 167 (307)
T ss_pred HHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4566677999999843322221 11111234566777778998764
No 456
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=28.50 E-value=2.6e+02 Score=21.16 Aligned_cols=29 Identities=3% Similarity=0.027 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
...+.+.+++|+++|++.+. -+|+++|=.
T Consensus 144 r~~~eRi~r~Af~~A~~r~~-k~Vt~v~Ka 172 (333)
T TIGR00175 144 RDKSERIARYAFEYARKNGR-KKVTAVHKA 172 (333)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CeEEEEECC
Confidence 46688899999999988863 357777633
No 457
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=28.45 E-value=2e+02 Score=19.84 Aligned_cols=68 Identities=12% Similarity=0.009 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+...+...+++.| ..+.......+... .+++.....++|-+|+........ .. -..+.+.+.|++++-
T Consensus 17 ~~~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~------~~-~~~~~~~~ipvV~~~ 86 (266)
T cd06282 17 CVQGIQEEARAAG--YSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATS------PA-LDLLDAERVPYVLAY 86 (266)
T ss_pred HHHHHHHHHHHCC--CEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCch------HH-HHHHhhCCCCEEEEe
Confidence 4445555556666 55544333333322 445555556889888853221111 11 234556678877763
No 458
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=28.44 E-value=1.6e+02 Score=20.74 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCCh---------hhHHHHHhhhhCCCEEEE-eecC
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDA---------KDVICGTVEKLEADTLVM-GSHG 127 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~i~~~a~~~~~dllvi-g~~~ 127 (160)
++.++++...+++.+ ....+..||. .+.+.+..+....+++++ |.++
T Consensus 44 ~~~l~rl~~li~~~~----~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~~~v~~V~GNHD 100 (225)
T TIGR00024 44 REIIERALSIADKYG----IEALIINGDLKHEFKKGLEWRFIREFIEVTFRDLILIRGNHD 100 (225)
T ss_pred HHHHHHHHHHHhhcC----CCEEEEcCccccccCChHHHHHHHHHHHhcCCcEEEECCCCC
Confidence 455666666666555 4444555543 234444555445555555 4444
No 459
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=28.37 E-value=2.3e+02 Score=20.40 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=3.3
Q ss_pred CCCEEEE
Q 031383 117 EADTLVM 123 (160)
Q Consensus 117 ~~dllvi 123 (160)
++|+|+-
T Consensus 218 ~vD~Ilg 224 (277)
T cd07410 218 GIDAILT 224 (277)
T ss_pred CCcEEEe
Confidence 4555443
No 460
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=28.33 E-value=2e+02 Score=19.81 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=46.1
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
|+||.|-+.++-....++-.++.--. .. +.|.+ ++...... .+.
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~-~~--~~I~~--vvs~~~~~-------------------------------~~~ 44 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQ-LP--AEIVA--VISDRPDA-------------------------------YGL 44 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCC-CC--cEEEE--EEecCccc-------------------------------hHH
Confidence 36788888877666666666643321 12 33333 44332110 134
Q ss_pred HHHHhcCCcceEEEEEec-----CChhhHHHHHhhhhCCCEEEEeec
Q 031383 85 AVYRNFQNNIHVKRVVGC-----GDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-----g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+.+++.+ +++...... ......+.+..++.++|++|+-..
T Consensus 45 ~~a~~~g--Ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 45 ERAEAAG--IPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred HHHHHcC--CCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHHh
Confidence 5556677 665432111 122457778888889999988543
No 461
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=28.29 E-value=2.2e+02 Score=20.20 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHH
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYC 143 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~l 143 (160)
...++-...++.| ++.-...--+.+.+.+..+.. ..|+|.+=+-.-+.-.+.|..++.++|
T Consensus 97 ~~~r~i~~Ik~~G--~kaGv~lnP~Tp~~~i~~~l~--~vD~VllMsVnPGfgGQ~Fi~~~l~Ki 157 (220)
T COG0036 97 HIHRTIQLIKELG--VKAGLVLNPATPLEALEPVLD--DVDLVLLMSVNPGFGGQKFIPEVLEKI 157 (220)
T ss_pred CHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHh--hCCEEEEEeECCCCcccccCHHHHHHH
Confidence 3344445555566 666666666788888888888 888877755544544455665655554
No 462
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=28.21 E-value=65 Score=24.43 Aligned_cols=31 Identities=3% Similarity=-0.055 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
....+.+.+++|+++|++.+. -+|+.+|=..
T Consensus 154 Tr~~~eRI~r~AFe~A~~R~~-kkvTsv~KaN 184 (348)
T COG0473 154 TRKGSERIARFAFELARKRGR-KKVTSVHKAN 184 (348)
T ss_pred cHHHHHHHHHHHHHHHHhhCC-CceEEEehhh
Confidence 346788999999999999832 5999988543
No 463
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=28.21 E-value=2.4e+02 Score=21.15 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=29.3
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC-Ccccce-eeccchhHHHhhcCCCCEEEe
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG-YGFIKR-ALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~-~~~~~~-~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+..+.++..+ .+|+||+|... -+.+-- +...-+.+.| ++.||+.|
T Consensus 174 ~a~p~vl~AI~--~AD~IiiGPgnp~TSI~P~L~v~gi~eAL---~~a~vV~V 221 (303)
T PRK13606 174 KPAPGVLEAIE--EADAVIIGPSNPVTSIGPILAVPGIREAL---TEAPVVAV 221 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHhhchhccchhHHHHH---hCCCEEEE
Confidence 46667778777 89999999543 333333 3344455555 67788744
No 464
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=28.20 E-value=2e+02 Score=20.10 Aligned_cols=9 Identities=44% Similarity=0.955 Sum_probs=5.3
Q ss_pred EEEEeecCC
Q 031383 120 TLVMGSHGY 128 (160)
Q Consensus 120 llvig~~~~ 128 (160)
.+|.|.+..
T Consensus 75 ~~V~GNHD~ 83 (232)
T cd07393 75 VLLKGNHDY 83 (232)
T ss_pred EEEeCCccc
Confidence 566666653
No 465
>PRK12569 hypothetical protein; Provisional
Probab=28.19 E-value=2.3e+02 Score=20.45 Aligned_cols=100 Identities=8% Similarity=0.038 Sum_probs=55.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
.|........+..+++|+..+ ..|-. -+..+....++ ........++........+..+...++..|
T Consensus 40 G~HAGDp~~M~~tv~lA~~~~--V~IGA---HPsyPD~~gFG-------Rr~m~~s~~el~~~v~yQigaL~~~~~~~g- 106 (245)
T PRK12569 40 GFHAGDPNIMRRTVELAKAHG--VGIGA---HPGFRDLVGFG-------RRHINASPQELVNDVLYQLGALREFARAHG- 106 (245)
T ss_pred cccCCCHHHHHHHHHHHHHcC--CEecc---CCCCCcCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 344445567888889998888 34322 22221111111 111111223444455555666677777777
Q ss_pred cceEEEE----Eec------CChhhHHHHHhhhhCCCEEEEeec
Q 031383 93 NIHVKRV----VGC------GDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 93 ~~~~~~~----~~~------g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
.++..+ ..+ ...++.|++.+++.+.++++++..
T Consensus 107 -~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~ 149 (245)
T PRK12569 107 -VRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMD 149 (245)
T ss_pred -CeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC
Confidence 444332 222 257788899999889999888843
No 466
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=28.09 E-value=2.8e+02 Score=21.32 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=27.1
Q ss_pred HHHHHHHHHHH--hcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCC
Q 031383 78 SVMNRAEAVYR--NFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 78 ~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
++.+.+.+-++ ..| +.++..-......+.+..... ++|.||+|+...
T Consensus 263 ~mA~~ia~g~~~~~~g--~~v~~~~~~~~~~~~i~~~~~--~~d~ii~GspT~ 311 (394)
T PRK11921 263 RMAEAIAEGIKKANKD--VTVKLYNSAKSDKNDIITEVF--KSKAILVGSSTI 311 (394)
T ss_pred HHHHHHHHHHhhcCCC--CeEEEEECCCCCHHHHHHHHH--hCCEEEEECCCc
Confidence 33344444444 445 666655444444556655554 799999997653
No 467
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=28.07 E-value=89 Score=25.14 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=24.9
Q ss_pred EEEEEecC--ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 96 VKRVVGCG--DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 96 ~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
++.+++-| -..+++++.|.++++.|++.|.+.
T Consensus 475 i~aIiQPGGSiRD~evI~aa~e~giaMvfTg~Rh 508 (511)
T TIGR00355 475 ITCIIQPGGSMRDEDSIWAADEHGIVMVFTGMRH 508 (511)
T ss_pred CEEEEcCCCCCCcHHHHHHHHHhCCEEEECCCCC
Confidence 45555555 456699999999999999999764
No 468
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.51 E-value=2.6e+02 Score=20.69 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=40.1
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccce-eeccchhHHHhhcCCCCEEEecCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKR-ALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~-~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
....++++.|++.+..+|+..+.+.-...+ ..+......+.+++++||.+-=++
T Consensus 29 e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH 83 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDH 83 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcC
Confidence 678899999999999999987654322222 235667788889999999876444
No 469
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=27.50 E-value=58 Score=23.02 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=20.2
Q ss_pred eeccchhHHHhhcCCCCEEEecCCC
Q 031383 134 ALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 134 ~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
+--|.+.+.++.+.+||-||++..-
T Consensus 202 ~~dG~fCr~~lp~vkcPtli~hG~k 226 (277)
T KOG2984|consen 202 FCDGRFCRLVLPQVKCPTLIMHGGK 226 (277)
T ss_pred cCCCchHhhhcccccCCeeEeeCCc
Confidence 3457788899999999999997543
No 470
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=27.46 E-value=62 Score=18.76 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=8.7
Q ss_pred HHHHHhhhhCCCEEEEee
Q 031383 108 VICGTVEKLEADTLVMGS 125 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~ 125 (160)
+.++..+..++-+||+..
T Consensus 18 ~v~kai~~gkaklViiA~ 35 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAE 35 (82)
T ss_pred HHHHHHHcCCeeEEEEEC
Confidence 344444445555555543
No 471
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=27.42 E-value=1.5e+02 Score=21.03 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=22.4
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh--cCCCCEEEecCCC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK--HVKCPVVIVKHPE 158 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~--~~~~pVlvv~~~~ 158 (160)
..+++.++..++|+||+... .+.....--=.....++. ..+.|++++|..+
T Consensus 23 ~~~~~~i~~~~~D~~v~tGD-l~~~~~~~~~~~~~~~l~~~~~~~~~~~vpGNH 75 (301)
T COG1409 23 EALLAAIEQLKPDLLVVTGD-LTNDGEPEEYRRLKELLARLELPAPVIVVPGNH 75 (301)
T ss_pred HHHHHHHhcCCCCEEEEccC-cCCCCCHHHHHHHHHHHhhccCCCceEeeCCCC
Confidence 33444444556677766532 111100000012334555 5556677776544
No 472
>PLN02347 GMP synthetase
Probab=27.35 E-value=3.4e+02 Score=22.12 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=29.7
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
.++|+++++|.-+|..++..+.+.. + .++.++++-.+.
T Consensus 229 ~~~vvvalSGGVDSsvla~l~~~al---G--~~v~av~id~g~ 266 (536)
T PLN02347 229 DEHVICALSGGVDSTVAATLVHKAI---G--DRLHCVFVDNGL 266 (536)
T ss_pred CCeEEEEecCChhHHHHHHHHHHHh---C--CcEEEEEEeCCC
Confidence 5789999999988888887777732 4 388888888654
No 473
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=27.34 E-value=1.3e+02 Score=21.60 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=9.3
Q ss_pred CeEEEEEEeCCCC
Q 031383 36 NTLVLLYVKPPLP 48 (160)
Q Consensus 36 a~l~~l~v~~~~~ 48 (160)
..+.++|+.+...
T Consensus 13 ~~~~i~~iSD~Hl 25 (275)
T PRK11148 13 ARVRILQITDTHL 25 (275)
T ss_pred CCEEEEEEcCccc
Confidence 3678888887663
No 474
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=27.27 E-value=2.1e+02 Score=20.07 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=26.9
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
+.++||+.+.+|-.+-.+.+..-.+- . + ++|.++.--
T Consensus 18 ~~k~IllgVtGSIAAyk~~~lvr~L~-~-g--~~V~VvmT~ 54 (209)
T PLN02496 18 RKPRILLAASGSVAAIKFGNLCHCFS-E-W--AEVRAVVTK 54 (209)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHhc-C-C--CeEEEEECh
Confidence 45789999999988888888776664 3 4 576655433
No 475
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=27.17 E-value=1.9e+02 Score=19.14 Aligned_cols=40 Identities=8% Similarity=-0.030 Sum_probs=22.5
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhh----hhCCCEEEEe
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVE----KLEADTLVMG 124 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~----~~~~dllvig 124 (160)
+...+++.| ..+.......|-.+.|.+..+ ..++|+||+.
T Consensus 27 l~~~L~~~G--~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVItt 70 (163)
T TIGR02667 27 LVERLTEAG--HRLADRAIVKDDIYQIRAQVSAWIADPDVQVILIT 70 (163)
T ss_pred HHHHHHHCC--CeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 344556677 655554444544444443332 3579999985
No 476
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.10 E-value=2.5e+02 Score=20.37 Aligned_cols=64 Identities=9% Similarity=0.144 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
-+..+.+..++.| +.+-+.+..-...+.+.+ .+|++=+|++...... ..+ -+.++..||++=+.
T Consensus 67 gl~~L~~~~~~~G--l~~~Tev~d~~~v~~~~e-----~vdilqIgs~~~~n~~------LL~-~va~tgkPVilk~G 130 (250)
T PRK13397 67 GIRYLHEVCQEFG--LLSVSEIMSERQLEEAYD-----YLDVIQVGARNMQNFE------FLK-TLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHHHHcC--CCEEEeeCCHHHHHHHHh-----cCCEEEECcccccCHH------HHH-HHHccCCeEEEeCC
Confidence 4566666777788 777776665444444332 5889999877654422 112 22344677776544
No 477
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.08 E-value=2.2e+02 Score=19.82 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
....+.+...+.+.| ..+.......+.. ..+++.....++|-+|+........ .... ..+....+||+++
T Consensus 16 ~~~~~g~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~-----~~~l-~~~~~~~iPvV~~ 87 (275)
T cd06317 16 TTYNKAFQAAAEEDG--VEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAY-----IPGL-RKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHHHHHHHhcC--CEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCcccc-----HHHH-HHHHHCCCcEEEe
Confidence 344455555555566 5555443323332 2445555567899988864322111 1112 3346678999887
Q ss_pred c
Q 031383 155 K 155 (160)
Q Consensus 155 ~ 155 (160)
.
T Consensus 88 ~ 88 (275)
T cd06317 88 N 88 (275)
T ss_pred C
Confidence 4
No 478
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=27.01 E-value=2.3e+02 Score=19.99 Aligned_cols=68 Identities=7% Similarity=0.023 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHh--hcCCCCEEEecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCA--KHVKCPVVIVKH 156 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll--~~~~~pVlvv~~ 156 (160)
+.+.+...++..| +...... +. ++..+.+... +|+|++-..- ....++- ..+.+- .....||+++-.
T Consensus 12 i~~~l~~~L~~~g----~~v~~~~-~~-~~a~~~~~~~-~dlviLD~~l-P~~dG~~---~~~~iR~~~~~~~PIi~Lta 80 (229)
T COG0745 12 LAELLKEYLEEEG----YEVDVAA-DG-EEALEAAREQ-PDLVLLDLML-PDLDGLE---LCRRLRAKKGSGPPIIVLTA 80 (229)
T ss_pred HHHHHHHHHHHCC----CEEEEEC-CH-HHHHHHHhcC-CCEEEEECCC-CCCCHHH---HHHHHHhhcCCCCcEEEEEC
Confidence 4455566666677 3333222 22 5666666666 9999998532 2222211 222333 335678998854
Q ss_pred C
Q 031383 157 P 157 (160)
Q Consensus 157 ~ 157 (160)
.
T Consensus 81 ~ 81 (229)
T COG0745 81 R 81 (229)
T ss_pred C
Confidence 4
No 479
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=26.95 E-value=1.6e+02 Score=18.19 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=35.7
Q ss_pred cCCcceEEEEEec--CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 90 FQNNIHVKRVVGC--GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 90 ~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
.| +.++.. .. ..-...|.+..+...+|+||--....+.-...--|...++..-..++|++-
T Consensus 44 ~G--i~v~~v-k~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 44 TG--LTVNRM-KSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred hC--CcEEEE-ecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 56 777766 33 122367999999999999987644211111112244555555556677653
No 480
>PLN02285 methionyl-tRNA formyltransferase
Probab=26.69 E-value=2.8e+02 Score=20.91 Aligned_cols=42 Identities=7% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHHHHhcCCcceEEEEEecCC-hhhHHHHHhhhhCCCEEEEeecC
Q 031383 84 EAVYRNFQNNIHVKRVVGCGD-AKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~-~~~~i~~~a~~~~~dllvig~~~ 127 (160)
+..+.+.+ +++........ -.+.+++..++.++|++|+...+
T Consensus 61 ~~~A~~~g--Ip~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~ 103 (334)
T PLN02285 61 AQLALDRG--FPPDLIFTPEKAGEEDFLSALRELQPDLCITAAYG 103 (334)
T ss_pred HHHHHHcC--CCcceecCccccCCHHHHHHHHhhCCCEEEhhHhh
Confidence 34445566 65332222222 13456677778899999987543
No 481
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=26.68 E-value=1.1e+02 Score=17.52 Aligned_cols=30 Identities=3% Similarity=-0.067 Sum_probs=22.3
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceee
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRAL 135 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~ 135 (160)
..+-++.|++.+-|||.+.......+.+++
T Consensus 30 ~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~ 59 (76)
T PF05198_consen 30 LREALRLAKEKGLDLVEVSPNADPPVCKIM 59 (76)
T ss_dssp HHHHHHHHHHTT-EEEEEETTSSS-EEEEE
T ss_pred HHHHHHHHHHcCCcEEEEcCCCCCCeEEEe
Confidence 567788999999999999977666666654
No 482
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=26.63 E-value=2.4e+02 Score=20.03 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=27.7
Q ss_pred hhHHHHHh---hhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 106 KDVICGTV---EKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 106 ~~~i~~~a---~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+.+.+.+ ++.++|+|||-+-|.+... -+.+-+.+.+||++-
T Consensus 164 ~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~-------r~~~~~~~g~PVlLs 208 (221)
T PF07302_consen 164 EEELAAAARELAEQGADLIVLDCMGYTQEM-------RDIVQRALGKPVLLS 208 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCHHH-------HHHHHHHhCCCEEeH
Confidence 34444444 4468999999887766432 244566678999874
No 483
>PRK05370 argininosuccinate synthase; Validated
Probab=26.52 E-value=3.3e+02 Score=21.66 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=64.6
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHH----------
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYAS---------- 73 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 73 (160)
.-++|++++++.-+++-++.|..+- + .+|+.+++--.... .++...+++...
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~----~--~eVia~~aDvGQ~~------------~ed~~~i~~kA~~~GA~~~~vi 71 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK----G--AVPYAYTANLGQPD------------EDDYDAIPRRAMEYGAENARLI 71 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc----C--CeEEEEEEECCCCC------------ccchHHHHHHHHHhCCCEEEEe
Confidence 3578999999988888888887765 5 79999998865421 011122222221
Q ss_pred HHHHHHHHHHHHHHHhcCCcceE----E------EEEecCChhhHHHHHhhhhCCCEEEEeecCCcccc
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHV----K------RVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIK 132 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~ 132 (160)
...+++.+... .+-+.+ .-+ + +-...-=.+..+++.|++.+++.|.=|+.+.+.-.
T Consensus 72 Dlr~eF~e~~i-~aI~an--A~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQ 137 (447)
T PRK05370 72 DCRAQLVAEGI-AAIQCG--AFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDI 137 (447)
T ss_pred ccHHHHHHHHH-HHHHcC--CccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCch
Confidence 12333443333 222233 211 1 11111246778999999999999999988766543
No 484
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=26.47 E-value=1.1e+02 Score=23.57 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEE------ecCChhhHHHHHhh-hhCCCEEEEeecC
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVV------GCGDAKDVICGTVE-KLEADTLVMGSHG 127 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~i~~~a~-~~~~dllvig~~~ 127 (160)
+++.+.+.+..+++++ ++-.++ .-|+-.+.+++.++ +.++.+|.+.+.+
T Consensus 73 ~~L~~aI~ei~~~~~P--~~I~V~sTCv~e~IGDDi~~v~~~~~~~~~~pvi~v~t~g 128 (396)
T cd01979 73 AELDRVVTQIKRDRNP--SVIFLIGSCTTEVIKMDLEGAAPRLSAEIGVPILVASASG 128 (396)
T ss_pred HHHHHHHHHHHHhcCC--CEEEEECCCHHHHHhcCHHHHHHHHhhcCCCcEEEeeCCC
Confidence 3444555566666663 222221 22666666666554 4567777776554
No 485
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=26.45 E-value=2.2e+02 Score=20.36 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=27.7
Q ss_pred EecCC---hhhHHHHHhhhhCCCE-EEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 100 VGCGD---AKDVICGTVEKLEADT-LVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 100 ~~~g~---~~~~i~~~a~~~~~dl-lvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
+..|. ..+.+.+.++ ++|+ ||||++..-..... .. ...+....+|++|...+
T Consensus 154 V~FGE~~~~~~~~~~~~~--~~DlllviGTSl~V~pa~~----l~-~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 154 VWFGEMPLYMDEIESVMS--KTDLFVAVGTSGNVYPAAG----FV-GRAQFYGATTLELNLEE 209 (242)
T ss_pred EEcCCCCCcHHHHHHHHH--hCCEEEEEccCCccccHHH----HH-HHHHHcCCeEEEECCCC
Confidence 44454 3345555554 7888 56676543322111 11 23455678888886554
No 486
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=26.45 E-value=2.9e+02 Score=21.00 Aligned_cols=49 Identities=4% Similarity=-0.031 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCC
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
..++.++...+..+ +++-.............+...+.++|.|+++.++.
T Consensus 173 ~~le~i~~i~~~~~--vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GG 221 (352)
T PRK05437 173 GWLDNIAEIVSALP--VPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGG 221 (352)
T ss_pred HHHHHHHHHHHhhC--CCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCC
Confidence 34455555555445 44444333222334666677778999999987653
No 487
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.39 E-value=2.6e+02 Score=20.41 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=18.1
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCccccee
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRA 134 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~ 134 (160)
..+.+....+..++|+|++-+.|+......
T Consensus 142 l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~ 171 (270)
T PRK06731 142 MTRALTYFKEEARVDYILIDTAGKNYRASE 171 (270)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCcCCHH
Confidence 333333333345789999988877754433
No 488
>PLN02329 3-isopropylmalate dehydrogenase
Probab=26.32 E-value=80 Score=24.62 Aligned_cols=26 Identities=8% Similarity=-0.086 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEE
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v 43 (160)
..+.+.+++|+++|++.+ .+|+++|=
T Consensus 211 ~~~eRI~r~AFe~A~~r~--~kVT~v~K 236 (409)
T PLN02329 211 HEIDRIARVAFETARKRR--GKLCSVDK 236 (409)
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEEC
Confidence 568899999999998876 47777663
No 489
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.29 E-value=1.9e+02 Score=22.83 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=36.0
Q ss_pred ChhhHHHHHhhh--hCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEK--LEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~--~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
.....|++..++ .++|.||+.-++.+.+.. -...-++.++.+.|||+=|..-
T Consensus 128 ~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~---~q~~I~~ar~~~~pVLvDPKg~ 181 (467)
T COG2870 128 EDENKLLEKIKNALKSFDALVLSDYAKGVLTN---VQKMIDLAREAGIPVLVDPKGK 181 (467)
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeccccccchh---HHHHHHHHHHcCCcEEECCCCc
Confidence 445566666665 689999999888776553 1233457788889999887543
No 490
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=26.21 E-value=3.5e+02 Score=21.81 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=21.4
Q ss_pred EEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 96 ~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+...+..+.....|..-+.+-++|+|++...
T Consensus 306 I~VKlva~~~v~~iaagvakA~AD~I~IdG~ 336 (485)
T COG0069 306 ISVKLVAEHGVGTIAAGVAKAGADVITIDGA 336 (485)
T ss_pred EEEEEecccchHHHHhhhhhccCCEEEEcCC
Confidence 5555666666666666466679999999643
No 491
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=26.08 E-value=3.1e+02 Score=21.24 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=27.5
Q ss_pred EEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 8 Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
|+++++|.-+|..++.++.+. .+ .+++.+++....
T Consensus 1 Vvva~SGGlDSsvll~~l~e~---~~--~eV~av~~d~Gq 35 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK---GG--YEVIAVTADVGQ 35 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh---CC--CeEEEEEEECCC
Confidence 578999998899898888764 23 489999987653
No 492
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.03 E-value=2.3e+02 Score=19.71 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCCh--hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+.+.+...+++.| ..+.......+. ...+.+...+.++|-||+....... ..+ .+...++||+++
T Consensus 18 ~~~~~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~--------~~~-~l~~~~ipvV~~ 86 (268)
T cd06277 18 SEIYRAIEEEAKKYG--YNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGISTE--------YIK-EIKELGIPFVLV 86 (268)
T ss_pred HHHHHHHHHHHHHcC--CEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCChH--------HHH-HHhhcCCCEEEE
Confidence 344555555666667 544443333222 2234555556788888885432111 123 345567888887
Q ss_pred cC
Q 031383 155 KH 156 (160)
Q Consensus 155 ~~ 156 (160)
-.
T Consensus 87 ~~ 88 (268)
T cd06277 87 DH 88 (268)
T ss_pred cc
Confidence 43
No 493
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=26.01 E-value=3.5e+02 Score=21.76 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=20.9
Q ss_pred cceEEEEEec-C--ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 93 NIHVKRVVGC-G--DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 93 ~~~~~~~~~~-g--~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
...+.+.... | ..+.++-.-++..+.|-|+.=+.-
T Consensus 313 ~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dv 350 (499)
T PF05679_consen 313 FSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFCDV 350 (499)
T ss_pred ccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEEeC
Confidence 3667777666 5 344444455666667777665443
No 494
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=25.92 E-value=1.8e+02 Score=18.50 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh--hCCCEEEEe
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dllvig 124 (160)
..+...+++.| ..+.......|-.+.|.+..++ .++|+||+-
T Consensus 20 ~~l~~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~Vitt 63 (144)
T PF00994_consen 20 PFLAALLEELG--IEVIRYGIVPDDPDAIKEALRRALDRADLVITT 63 (144)
T ss_dssp HHHHHHHHHTT--EEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcC--CeeeEEEEECCCHHHHHHHHHhhhccCCEEEEc
Confidence 34455666688 6666554445555555444432 266999984
No 495
>PRK08299 isocitrate dehydrogenase; Validated
Probab=25.90 E-value=64 Score=25.09 Aligned_cols=26 Identities=12% Similarity=-0.055 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
...+.+.+++|+++|+..+ .+|+++|
T Consensus 184 r~~~eRIa~~AF~~A~~r~--~kVt~v~ 209 (402)
T PRK08299 184 DESIRDFARASFNYGLDRK--YPVYLST 209 (402)
T ss_pred HHHHHHHHHHHHHHHHHcC--CCEEEEC
Confidence 4578999999999999987 4666665
No 496
>PRK06247 pyruvate kinase; Provisional
Probab=25.88 E-value=2.1e+02 Score=22.99 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=32.2
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKHP 157 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~~ 157 (160)
.+......+...++.+||+-++. |+++..+.+.-| |||+.+-+.
T Consensus 357 ia~sa~~~A~~l~a~~Iv~~T~s---------G~ta~~isk~RP~~pI~a~t~~ 401 (476)
T PRK06247 357 ISYAARDIAERLDLAALVAYTSS---------GDTALRAARERPPLPILALTPN 401 (476)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCC---------cHHHHHHHhhCCCCCEEEECCC
Confidence 55566677888899988886442 667777887766 999988543
No 497
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.87 E-value=2.4e+02 Score=19.85 Aligned_cols=66 Identities=11% Similarity=0.161 Sum_probs=37.6
Q ss_pred HHHHHHhcCCcceEEEEEecC--ChhhHHH---HHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 83 AEAVYRNFQNNIHVKRVVGCG--DAKDVIC---GTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g--~~~~~i~---~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+...+++.| +..+..++ +...++. +..+ .+.|+++..-..++..... ++=+-.|.+.+.||++.+.
T Consensus 83 iA~~l~kfG----~~~IRGSs~Kgg~~Alr~l~k~Lk-~G~~i~itpDgPkGp~~~~--~~Gii~LA~~sg~pi~pv~ 153 (214)
T COG2121 83 IARLLEKFG----LRVIRGSSNKGGISALRALLKALK-QGKSIAITPDGPKGPVHKI--GDGIIALAQKSGVPIIPVG 153 (214)
T ss_pred HHHHHHHcC----ceEEeccCCcchHHHHHHHHHHHh-CCCcEEEcCCCCCCCceec--cchhhHhhHhcCCCeEEEE
Confidence 344555677 44444443 3333333 3333 4777777754445555444 4444578888889988764
No 498
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.78 E-value=1.8e+02 Score=21.52 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=25.2
Q ss_pred CCCCceEEEEEec-CChHHHHHHHHHHHhcCCCCCCCeEEE
Q 031383 1 MNTNERRVVVAVD-ESEESMHALSWCLNNLFSPDTNNTLVL 40 (160)
Q Consensus 1 m~~~~~~Ilv~~d-~s~~s~~al~~a~~~a~~~~~~a~l~~ 40 (160)
|++++++|++... .++.+...++.........+ .++.+
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g--~~v~~ 39 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQHG--FTVYL 39 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHCC--CEEEE
Confidence 8899999988876 44566666666665445555 45554
No 499
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=25.71 E-value=2.4e+02 Score=19.75 Aligned_cols=74 Identities=11% Similarity=-0.013 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCCh--hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
......+.+.+.+++.| ..+......++. ...+++.....++|-+|+......... ... ..+.+...||+
T Consensus 13 ~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~i-~~~~~~~iPvV 84 (273)
T cd06309 13 WRTAETKSIKDAAEKRG--FDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWD-----PVL-KEAKAAGIPVI 84 (273)
T ss_pred HHHHHHHHHHHHHHhcC--CEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccch-----HHH-HHHHHCCCCEE
Confidence 34556666777777777 554443222232 224555566678999888643221111 111 23456678998
Q ss_pred EecC
Q 031383 153 IVKH 156 (160)
Q Consensus 153 vv~~ 156 (160)
++-.
T Consensus 85 ~~~~ 88 (273)
T cd06309 85 LVDR 88 (273)
T ss_pred EEec
Confidence 8854
No 500
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=25.67 E-value=2.4e+02 Score=19.75 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=29.6
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCc----ccce---eeccchhHHHhhcCCCCEEEecCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYG----FIKR---ALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~----~~~~---~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
..+.|.+.+...++++||+-.-..- .... ..+-.....+.+...|.|+++.+.
T Consensus 99 ~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~ 158 (239)
T cd01125 99 EFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHV 158 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 4455666666679999999742110 0000 011122344556678999998653
Done!