Query 031383
Match_columns 160
No_of_seqs 106 out of 1050
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mjh_A Protein (ATP-binding do 100.0 1.1E-29 3.7E-34 168.0 17.9 154 1-158 1-161 (162)
2 3s3t_A Nucleotide-binding prot 100.0 1.2E-29 4.2E-34 165.0 15.2 142 3-155 3-146 (146)
3 2dum_A Hypothetical protein PH 100.0 1.3E-29 4.5E-34 168.9 14.2 155 1-159 1-159 (170)
4 3idf_A USP-like protein; unive 100.0 1.9E-28 6.5E-33 158.0 16.3 136 5-155 1-138 (138)
5 3fg9_A Protein of universal st 100.0 5.5E-28 1.9E-32 158.9 15.3 139 3-155 13-156 (156)
6 3hgm_A Universal stress protei 100.0 2.8E-29 9.6E-34 163.4 8.6 144 4-154 1-147 (147)
7 1tq8_A Hypothetical protein RV 100.0 2.2E-28 7.4E-33 162.2 12.9 144 3-159 15-161 (163)
8 3dlo_A Universal stress protei 100.0 5.1E-28 1.8E-32 159.1 14.2 132 4-155 23-155 (155)
9 2gm3_A Unknown protein; AT3G01 100.0 1.8E-27 6E-32 159.3 15.9 151 3-158 3-165 (175)
10 3tnj_A Universal stress protei 100.0 9.9E-29 3.4E-33 161.4 8.0 145 3-159 4-150 (150)
11 2z08_A Universal stress protei 100.0 9E-28 3.1E-32 154.7 11.8 136 4-155 1-137 (137)
12 3fdx_A Putative filament prote 99.9 3.2E-27 1.1E-31 153.0 11.4 139 6-155 2-143 (143)
13 1jmv_A USPA, universal stress 99.9 2.8E-26 9.5E-31 148.3 8.0 138 4-158 1-140 (141)
14 3olq_A Universal stress protei 99.9 6.1E-25 2.1E-29 159.4 15.2 147 3-158 5-152 (319)
15 3loq_A Universal stress protei 99.9 1.4E-25 4.8E-30 161.2 9.5 145 1-158 18-164 (294)
16 3cis_A Uncharacterized protein 99.9 4.5E-24 1.5E-28 154.4 14.9 142 3-158 17-163 (309)
17 3mt0_A Uncharacterized protein 99.9 3.2E-24 1.1E-28 153.9 12.7 137 4-157 133-277 (290)
18 3ab8_A Putative uncharacterize 99.9 2.7E-24 9.1E-29 152.6 11.1 146 6-158 1-151 (268)
19 3mt0_A Uncharacterized protein 99.9 2.8E-24 9.5E-29 154.3 11.2 126 1-157 3-129 (290)
20 3loq_A Universal stress protei 99.9 1.7E-23 5.7E-28 150.4 12.8 127 3-160 168-294 (294)
21 1q77_A Hypothetical protein AQ 99.9 1.9E-23 6.6E-28 134.4 11.1 133 3-155 2-138 (138)
22 3cis_A Uncharacterized protein 99.9 2.2E-22 7.5E-27 145.6 15.2 138 4-158 170-308 (309)
23 3olq_A Universal stress protei 99.9 2.2E-23 7.6E-28 151.2 9.8 143 4-158 155-307 (319)
24 3ab8_A Putative uncharacterize 99.9 4.8E-21 1.7E-25 135.8 12.2 116 4-155 153-268 (268)
25 3a2k_A TRNA(Ile)-lysidine synt 96.9 0.014 4.9E-07 44.3 11.2 98 3-128 16-130 (464)
26 1wy5_A TILS, hypothetical UPF0 96.7 0.029 1E-06 40.3 11.1 97 3-128 22-136 (317)
27 4b4k_A N5-carboxyaminoimidazol 96.4 0.041 1.4E-06 36.0 8.8 70 79-158 37-110 (181)
28 4grd_A N5-CAIR mutase, phospho 95.9 0.06 2E-06 35.0 7.8 69 79-157 27-99 (173)
29 3oow_A Phosphoribosylaminoimid 95.8 0.12 4.1E-06 33.5 8.6 70 79-158 20-93 (166)
30 2ywx_A Phosphoribosylaminoimid 95.7 0.097 3.3E-06 33.6 7.9 68 79-156 14-82 (157)
31 3kuu_A Phosphoribosylaminoimid 95.6 0.1 3.5E-06 34.0 8.0 69 79-157 27-99 (174)
32 3trh_A Phosphoribosylaminoimid 95.6 0.1 3.4E-06 33.9 7.8 69 79-157 21-93 (169)
33 1xmp_A PURE, phosphoribosylami 95.5 0.12 4.2E-06 33.5 8.0 70 79-158 26-99 (170)
34 2iel_A Hypothetical protein TT 95.4 0.24 8.4E-06 30.9 12.4 130 5-154 1-133 (138)
35 3lp6_A Phosphoribosylaminoimid 95.3 0.12 4.2E-06 33.7 7.7 69 79-157 22-94 (174)
36 1o4v_A Phosphoribosylaminoimid 95.3 0.13 4.4E-06 33.8 7.8 70 79-158 28-101 (183)
37 3ors_A N5-carboxyaminoimidazol 95.3 0.14 4.7E-06 33.1 7.7 69 79-157 18-90 (163)
38 3rg8_A Phosphoribosylaminoimid 95.1 0.15 5.3E-06 32.8 7.6 69 79-157 17-90 (159)
39 1u11_A PURE (N5-carboxyaminoim 95.0 0.18 6E-06 33.2 7.7 70 79-158 36-109 (182)
40 3umv_A Deoxyribodipyrimidine p 94.6 0.31 1.1E-05 37.5 9.4 89 13-123 47-135 (506)
41 1ni5_A Putative cell cycle pro 94.3 0.42 1.4E-05 35.9 9.5 42 4-47 12-54 (433)
42 2xry_A Deoxyribodipyrimidine p 93.8 0.53 1.8E-05 35.9 9.2 116 13-156 46-161 (482)
43 2wq7_A RE11660P; lyase-DNA com 93.7 0.53 1.8E-05 36.5 9.2 129 6-156 29-161 (543)
44 1zun_A Sulfate adenylyltransfe 93.2 0.71 2.4E-05 33.3 8.7 41 5-47 46-86 (325)
45 3g40_A Na-K-CL cotransporter; 92.4 0.62 2.1E-05 33.0 7.2 103 17-158 177-279 (294)
46 1np7_A DNA photolyase; protein 92.3 2.6 8.9E-05 32.1 11.1 130 6-156 6-137 (489)
47 2hma_A Probable tRNA (5-methyl 91.9 2.3 7.8E-05 31.3 10.1 38 3-46 7-44 (376)
48 1iv0_A Hypothetical protein; r 91.7 0.58 2E-05 27.5 5.5 55 104-159 38-96 (98)
49 2der_A TRNA-specific 2-thiouri 91.7 2.8 9.5E-05 31.0 10.3 101 1-128 13-143 (380)
50 3g40_A Na-K-CL cotransporter; 91.5 2.7 9.3E-05 29.8 12.4 122 6-158 21-148 (294)
51 2nz2_A Argininosuccinate synth 91.1 3.7 0.00013 30.7 10.5 37 5-47 5-41 (413)
52 3ih5_A Electron transfer flavo 91.1 1 3.5E-05 30.5 7.0 87 4-127 2-101 (217)
53 1k92_A Argininosuccinate synth 90.9 4.2 0.00014 30.8 12.3 39 3-47 8-46 (455)
54 3tqr_A Phosphoribosylglycinami 90.6 2.8 9.6E-05 28.3 11.9 88 1-127 1-93 (215)
55 2h31_A Multifunctional protein 89.9 1.3 4.4E-05 33.2 7.1 69 79-157 280-353 (425)
56 3tvs_A Cryptochrome-1; circadi 89.6 0.72 2.5E-05 35.7 5.8 120 13-155 13-135 (538)
57 2c5s_A THII, probable thiamine 88.2 6.5 0.00022 29.3 11.4 36 4-45 186-221 (413)
58 3p9x_A Phosphoribosylglycinami 87.8 4.7 0.00016 27.2 10.1 85 5-127 2-91 (211)
59 1o97_C Electron transferring f 87.8 5.4 0.00018 27.8 9.0 34 10-45 31-66 (264)
60 3nbm_A PTS system, lactose-spe 87.7 1.2 4E-05 26.7 4.7 63 80-156 23-86 (108)
61 1sur_A PAPS reductase; assimil 87.1 5 0.00017 26.7 9.7 36 6-47 45-80 (215)
62 1efp_B ETF, protein (electron 86.7 2 6.8E-05 29.8 6.0 30 13-45 34-65 (252)
63 1vl2_A Argininosuccinate synth 86.2 8.9 0.0003 28.8 10.1 36 5-46 14-49 (421)
64 3kcq_A Phosphoribosylglycinami 85.3 6.7 0.00023 26.5 11.2 86 4-127 7-92 (215)
65 3fy4_A 6-4 photolyase; DNA rep 84.6 4.1 0.00014 31.6 7.4 96 13-125 14-111 (537)
66 3da8_A Probable 5'-phosphoribo 84.4 7.4 0.00025 26.3 9.7 84 4-127 11-99 (215)
67 3bl5_A Queuosine biosynthesis 84.2 7.1 0.00024 25.8 10.9 36 5-46 3-38 (219)
68 1kor_A Argininosuccinate synth 84.1 11 0.00036 28.1 9.2 37 6-47 1-37 (400)
69 1u3d_A Cryptochrome 1 apoprote 83.9 12 0.00042 28.6 9.8 117 13-156 21-138 (509)
70 2wsi_A FAD synthetase; transfe 83.6 8.6 0.00029 27.4 8.3 91 6-127 54-167 (306)
71 1owl_A Photolyase, deoxyribodi 83.5 7.7 0.00026 29.6 8.5 118 13-156 12-129 (484)
72 2ywb_A GMP synthase [glutamine 83.0 14 0.00047 28.3 9.9 35 6-46 210-244 (503)
73 1nu0_A Hypothetical protein YQ 82.9 0.91 3.1E-05 28.5 2.7 55 104-158 40-98 (138)
74 1efv_B Electron transfer flavo 82.8 9.7 0.00033 26.4 9.6 29 14-45 38-68 (255)
75 2e0i_A 432AA long hypothetical 82.4 5.7 0.00019 29.9 7.3 117 13-156 10-126 (440)
76 1vhx_A Putative holliday junct 82.2 0.83 2.8E-05 29.1 2.3 55 104-158 42-100 (150)
77 3s40_A Diacylglycerol kinase; 81.6 7.8 0.00027 27.4 7.5 72 79-159 27-100 (304)
78 3gxq_A Putative regulator of t 81.4 2.2 7.7E-05 20.8 3.1 29 93-121 9-38 (54)
79 2pg3_A Queuosine biosynthesis 81.2 10 0.00034 25.5 11.9 36 5-46 2-37 (232)
80 2qv7_A Diacylglycerol kinase D 81.1 8.5 0.00029 27.6 7.6 73 78-158 42-116 (337)
81 2j07_A Deoxyribodipyrimidine p 80.6 11 0.00038 28.1 8.2 111 13-156 11-121 (420)
82 3o1l_A Formyltetrahydrofolate 79.7 14 0.00049 26.3 9.7 84 4-127 104-191 (302)
83 3tqi_A GMP synthase [glutamine 79.4 3.1 0.00011 32.1 5.1 36 6-46 231-266 (527)
84 2j4d_A Cryptochrome 3, cryptoc 79.2 20 0.00067 27.6 12.0 131 6-156 40-174 (525)
85 2oq2_A Phosphoadenosine phosph 78.6 14 0.00047 25.5 9.4 40 5-47 41-80 (261)
86 2yxb_A Coenzyme B12-dependent 77.5 9.4 0.00032 24.3 6.2 66 83-154 38-106 (161)
87 3vmk_A 3-isopropylmalate dehyd 77.3 19 0.00064 26.6 8.4 78 15-124 178-255 (375)
88 2q5c_A NTRC family transcripti 77.0 13 0.00045 24.5 7.3 46 99-157 32-79 (196)
89 2hy5_B Intracellular sulfur ox 76.5 5.2 0.00018 24.8 4.7 43 1-46 1-47 (136)
90 3lou_A Formyltetrahydrofolate 76.2 18 0.00062 25.6 10.0 84 4-127 94-181 (292)
91 1ccw_A Protein (glutamate muta 76.2 11 0.00038 23.2 6.4 67 82-154 22-91 (137)
92 3n0v_A Formyltetrahydrofolate 75.6 18 0.00063 25.5 10.0 84 4-127 89-176 (286)
93 3d0c_A Dihydrodipicolinate syn 75.3 19 0.00065 25.7 7.9 62 93-155 81-144 (314)
94 2dpl_A GMP synthetase, GMP syn 75.0 10 0.00034 27.0 6.4 37 6-47 21-57 (308)
95 1vbk_A Hypothetical protein PH 74.8 20 0.00069 25.5 10.1 34 4-44 178-211 (307)
96 2ywr_A Phosphoribosylglycinami 74.4 17 0.00058 24.4 11.8 62 84-156 44-110 (216)
97 3udu_A 3-isopropylmalate dehyd 74.0 21 0.00073 26.1 7.9 78 15-124 166-243 (361)
98 2l2q_A PTS system, cellobiose- 73.5 8.1 0.00028 22.8 4.8 63 81-156 22-84 (109)
99 3kht_A Response regulator; PSI 73.5 10 0.00034 22.8 5.5 69 81-157 19-90 (144)
100 2bon_A Lipid kinase; DAG kinas 72.9 19 0.00065 25.7 7.5 70 81-158 47-120 (332)
101 3eb2_A Putative dihydrodipicol 72.6 23 0.00077 25.1 8.4 64 94-157 74-139 (300)
102 3l21_A DHDPS, dihydrodipicolin 72.6 23 0.00078 25.1 8.2 62 94-155 85-148 (304)
103 3fni_A Putative diflavin flavo 72.6 14 0.00049 23.3 6.1 49 77-129 19-68 (159)
104 2r8w_A AGR_C_1641P; APC7498, d 72.0 25 0.00085 25.3 8.1 62 94-155 104-167 (332)
105 2nwr_A 2-dehydro-3-deoxyphosph 71.7 22 0.00077 24.8 7.3 64 80-157 64-127 (267)
106 2v9d_A YAGE; dihydrodipicolini 71.3 26 0.0009 25.3 8.0 62 94-155 101-164 (343)
107 3obi_A Formyltetrahydrofolate 71.0 22 0.00076 25.1 7.3 36 4-42 88-123 (288)
108 2i2x_B MTAC, methyltransferase 70.9 20 0.00067 24.7 7.0 67 83-155 143-211 (258)
109 2ojp_A DHDPS, dihydrodipicolin 70.8 25 0.00084 24.8 7.6 63 94-156 71-135 (292)
110 1xky_A Dihydrodipicolinate syn 70.7 25 0.00086 24.9 7.9 62 94-155 82-145 (301)
111 1y80_A Predicted cobalamin bin 70.7 16 0.00055 24.2 6.3 67 83-155 108-178 (210)
112 1cnz_A IPMDH, IMDH, protein (3 70.7 29 0.00098 25.5 8.4 79 14-124 168-246 (363)
113 2ehh_A DHDPS, dihydrodipicolin 70.5 25 0.00086 24.7 8.0 62 94-155 70-133 (294)
114 1vlc_A 3-isopropylmalate dehyd 70.3 29 0.001 25.5 8.4 78 15-124 173-250 (366)
115 2gkg_A Response regulator homo 70.2 13 0.00045 21.4 5.8 46 106-154 38-86 (127)
116 3zqu_A Probable aromatic acid 70.1 7.5 0.00026 26.1 4.5 36 5-43 4-39 (209)
117 1f6k_A N-acetylneuraminate lya 69.9 22 0.00075 25.0 7.1 62 94-155 74-137 (293)
118 3u1h_A 3-isopropylmalate dehyd 69.9 31 0.0011 25.6 8.4 78 15-124 185-262 (390)
119 3m5v_A DHDPS, dihydrodipicolin 69.7 24 0.00083 24.9 7.3 62 94-155 78-141 (301)
120 1dnp_A DNA photolyase; DNA rep 69.7 23 0.00077 26.9 7.5 88 17-125 14-103 (471)
121 2yxg_A DHDPS, dihydrodipicolin 69.6 26 0.00089 24.6 7.9 62 94-155 70-133 (289)
122 2vc6_A MOSA, dihydrodipicolina 69.6 22 0.00075 25.0 7.1 62 94-155 70-133 (292)
123 2y3z_A 3-isopropylmalate dehyd 69.4 31 0.001 25.3 8.4 78 15-124 162-239 (359)
124 4f2d_A L-arabinose isomerase; 69.4 7.2 0.00025 29.9 4.8 47 104-156 58-105 (500)
125 1o5k_A DHDPS, dihydrodipicolin 69.0 28 0.00096 24.7 8.0 62 94-155 82-145 (306)
126 2ejb_A Probable aromatic acid 68.9 8 0.00027 25.5 4.4 35 5-42 1-35 (189)
127 3qze_A DHDPS, dihydrodipicolin 68.9 29 0.00098 24.8 7.8 63 94-156 93-157 (314)
128 3hly_A Flavodoxin-like domain; 68.9 19 0.00064 22.7 6.3 49 77-129 15-63 (161)
129 1a05_A IPMDH, IMDH, 3-isopropy 68.8 31 0.0011 25.2 8.5 79 14-124 163-241 (358)
130 3r8w_A 3-isopropylmalate dehyd 68.8 34 0.0012 25.5 8.5 78 15-124 206-283 (405)
131 3auf_A Glycinamide ribonucleot 68.1 25 0.00087 23.8 12.2 61 84-155 65-130 (229)
132 3cpr_A Dihydrodipicolinate syn 68.0 29 0.001 24.5 8.0 63 94-156 86-150 (304)
133 3nrb_A Formyltetrahydrofolate 68.0 16 0.00055 25.8 6.0 38 4-44 87-124 (287)
134 3k32_A Uncharacterized protein 67.8 23 0.00079 23.3 9.1 36 5-46 6-41 (203)
135 1meo_A Phosophoribosylglycinam 67.5 25 0.00084 23.5 11.5 104 6-156 1-109 (209)
136 3tak_A DHDPS, dihydrodipicolin 67.5 29 0.001 24.3 7.8 63 94-156 71-135 (291)
137 3h1g_A Chemotaxis protein CHEY 67.4 16 0.00055 21.4 5.6 68 82-157 20-90 (129)
138 3flk_A Tartrate dehydrogenase/ 67.2 25 0.00086 25.8 7.0 80 14-124 164-244 (364)
139 3daq_A DHDPS, dihydrodipicolin 67.0 27 0.00092 24.6 7.1 63 93-155 71-135 (292)
140 2wkj_A N-acetylneuraminate lya 66.8 26 0.00089 24.8 7.0 62 94-155 81-145 (303)
141 2rfg_A Dihydrodipicolinate syn 66.6 27 0.00091 24.7 7.0 62 94-155 70-133 (297)
142 3e96_A Dihydrodipicolinate syn 66.6 24 0.00083 25.1 6.9 62 93-155 81-144 (316)
143 3flu_A DHDPS, dihydrodipicolin 66.4 31 0.0011 24.3 7.8 63 94-156 77-141 (297)
144 2pju_A Propionate catabolism o 66.4 27 0.00094 23.6 7.4 62 82-157 27-91 (225)
145 3i42_A Response regulator rece 66.2 17 0.00057 21.1 6.8 67 81-157 17-86 (127)
146 3en0_A Cyanophycinase; serine 66.0 7.7 0.00026 27.5 4.1 109 4-146 24-139 (291)
147 1e2b_A Enzyme IIB-cellobiose; 66.0 13 0.00045 21.8 4.6 43 79-129 19-62 (106)
148 3na8_A Putative dihydrodipicol 64.4 23 0.0008 25.2 6.4 62 94-155 94-157 (315)
149 3a5f_A Dihydrodipicolinate syn 63.2 27 0.00094 24.5 6.5 62 94-155 71-134 (291)
150 3grc_A Sensor protein, kinase; 62.7 21 0.00073 21.1 5.8 47 106-156 39-88 (140)
151 1qzu_A Hypothetical protein MD 62.0 13 0.00043 24.9 4.4 38 3-42 17-54 (206)
152 1t9k_A Probable methylthioribo 61.7 30 0.001 25.1 6.6 61 87-155 204-268 (347)
153 3si9_A DHDPS, dihydrodipicolin 61.4 31 0.0011 24.6 6.6 63 94-156 92-156 (315)
154 2yvk_A Methylthioribose-1-phos 61.3 29 0.00098 25.6 6.4 61 87-155 229-293 (374)
155 3blx_A Isocitrate dehydrogenas 61.2 45 0.0015 24.3 7.5 81 14-124 155-236 (349)
156 1g63_A Epidermin modifying enz 60.9 12 0.00041 24.5 4.0 37 5-44 2-38 (181)
157 3ezx_A MMCP 1, monomethylamine 60.8 22 0.00075 23.8 5.5 66 83-154 112-183 (215)
158 3b4u_A Dihydrodipicolinate syn 60.8 41 0.0014 23.7 7.5 63 93-155 72-140 (294)
159 2o8v_A Phosphoadenosine phosph 59.9 38 0.0013 23.1 9.6 36 6-47 46-81 (252)
160 3dff_A Teicoplanin pseudoaglyc 59.8 41 0.0014 23.4 9.6 49 106-154 137-185 (273)
161 2a0u_A Initiation factor 2B; S 59.0 30 0.001 25.6 6.2 61 87-155 233-297 (383)
162 4ds3_A Phosphoribosylglycinami 57.9 39 0.0013 22.6 11.4 85 5-127 7-96 (209)
163 3eul_A Possible nitrate/nitrit 57.8 28 0.00097 20.9 7.7 49 105-157 49-98 (152)
164 3w01_A Heptaprenylglyceryl pho 57.5 18 0.00063 24.7 4.6 48 108-158 27-74 (235)
165 3av3_A Phosphoribosylglycinami 56.9 41 0.0014 22.5 11.6 62 84-156 46-112 (212)
166 3qjg_A Epidermin biosynthesis 56.1 21 0.00073 23.1 4.6 35 5-42 5-39 (175)
167 1w0d_A 3-isopropylmalate dehyd 55.8 56 0.0019 23.7 8.2 79 14-124 152-231 (337)
168 1qv9_A F420-dependent methylen 55.2 15 0.00052 25.3 3.8 44 110-157 57-100 (283)
169 1uf3_A Hypothetical protein TT 55.0 22 0.00075 23.2 4.7 17 108-124 23-39 (228)
170 2d1c_A Isocitrate dehydrogenas 54.2 58 0.002 25.0 7.2 79 15-124 164-243 (496)
171 3vzx_A Heptaprenylglyceryl pho 54.0 18 0.00062 24.6 4.1 47 108-157 22-68 (228)
172 3lqk_A Dipicolinate synthase s 53.9 15 0.0005 24.5 3.6 40 1-43 3-43 (201)
173 3fkr_A L-2-keto-3-deoxyarabona 53.8 52 0.0018 23.3 6.7 64 93-156 77-145 (309)
174 1k68_A Phytochrome response re 53.6 31 0.0011 20.1 4.9 70 80-157 15-94 (140)
175 3t8y_A CHEB, chemotaxis respon 53.5 36 0.0012 20.9 7.6 48 105-156 59-106 (164)
176 2ppv_A Uncharacterized protein 53.3 16 0.00054 26.5 3.9 50 104-156 166-217 (332)
177 1vp8_A Hypothetical protein AF 53.2 47 0.0016 22.1 5.9 78 74-155 26-105 (201)
178 1x0l_A Homoisocitrate dehydrog 52.9 63 0.0021 23.4 8.2 81 14-124 142-222 (333)
179 3f6p_A Transcriptional regulat 51.0 33 0.0011 19.6 7.9 64 83-156 18-81 (120)
180 2f6u_A GGGPS, (S)-3-O-geranylg 50.9 20 0.00067 24.5 3.9 47 107-156 23-69 (234)
181 1w2w_B 5-methylthioribose-1-ph 50.7 11 0.00036 25.0 2.5 60 88-155 27-92 (191)
182 4e7p_A Response regulator; DNA 50.7 38 0.0013 20.3 7.5 49 105-157 54-103 (150)
183 3gl9_A Response regulator; bet 49.7 35 0.0012 19.6 5.9 65 83-157 18-85 (122)
184 2qr3_A Two-component system re 49.6 37 0.0013 19.8 6.3 66 81-155 17-87 (140)
185 3inp_A D-ribulose-phosphate 3- 49.6 32 0.0011 23.7 4.8 42 80-125 182-224 (246)
186 3m9w_A D-xylose-binding peripl 49.2 62 0.0021 22.3 9.3 71 79-157 20-92 (313)
187 2p0y_A Hypothetical protein LP 49.2 16 0.00056 26.5 3.4 50 104-156 177-228 (341)
188 2o2z_A Hypothetical protein; s 48.2 17 0.00059 26.2 3.4 51 104-157 167-219 (323)
189 1y5e_A Molybdenum cofactor bio 48.0 51 0.0017 21.0 5.5 40 83-124 36-79 (169)
190 3o1i_D Periplasmic protein TOR 47.9 63 0.0021 22.0 8.3 71 76-155 20-94 (304)
191 2q8u_A Exonuclease, putative; 47.8 14 0.00048 26.3 3.0 12 36-47 17-28 (336)
192 2l69_A Rossmann 2X3 fold prote 47.5 39 0.0013 19.5 4.6 42 82-125 41-83 (134)
193 3iwt_A 178AA long hypothetical 47.1 53 0.0018 20.9 5.6 41 82-124 44-88 (178)
194 3bul_A Methionine synthase; tr 46.9 51 0.0017 25.9 6.1 68 82-155 117-186 (579)
195 3qfe_A Putative dihydrodipicol 46.9 76 0.0026 22.6 7.7 64 93-157 80-148 (318)
196 3ty4_A Probable homoisocitrate 46.8 59 0.002 23.9 6.1 79 15-124 161-255 (366)
197 2qxy_A Response regulator; reg 46.8 42 0.0015 19.7 7.2 66 81-157 18-84 (142)
198 3cg4_A Response regulator rece 46.6 43 0.0015 19.6 5.9 49 105-157 39-90 (142)
199 3klo_A Transcriptional regulat 46.6 53 0.0018 21.4 5.6 57 96-156 33-91 (225)
200 3to5_A CHEY homolog; alpha(5)b 46.4 48 0.0016 20.2 6.6 65 82-157 27-96 (134)
201 3hv2_A Response regulator/HD d 45.9 47 0.0016 19.9 6.2 66 82-157 29-95 (153)
202 2is8_A Molybdopterin biosynthe 45.7 55 0.0019 20.7 5.3 40 83-124 26-69 (164)
203 3jy6_A Transcriptional regulat 45.2 67 0.0023 21.6 9.3 72 75-157 21-94 (276)
204 3h5i_A Response regulator/sens 45.2 46 0.0016 19.6 8.4 68 82-157 20-87 (140)
205 2q7x_A UPF0052 protein SP_1565 45.0 19 0.00065 26.0 3.2 50 104-156 173-224 (326)
206 3vk5_A MOEO5; TIM barrel, tran 45.0 25 0.00087 24.8 3.8 46 109-155 58-104 (286)
207 4e0q_A COP9 signalosome comple 44.7 52 0.0018 20.4 4.9 49 107-155 73-121 (141)
208 3l6u_A ABC-type sugar transpor 44.6 70 0.0024 21.6 9.5 74 76-157 23-98 (293)
209 1qkk_A DCTD, C4-dicarboxylate 44.0 51 0.0017 19.8 5.4 47 106-156 36-83 (155)
210 1h5y_A HISF; histidine biosynt 43.9 44 0.0015 22.3 4.9 48 107-154 157-204 (253)
211 3uug_A Multiple sugar-binding 43.7 78 0.0027 21.9 8.0 72 78-157 20-93 (330)
212 3dm5_A SRP54, signal recogniti 43.7 1E+02 0.0035 23.2 9.1 23 108-130 173-195 (443)
213 3t1i_A Double-strand break rep 43.5 33 0.0011 25.8 4.5 14 146-159 137-150 (431)
214 3mcu_A Dipicolinate synthase, 43.4 25 0.00085 23.5 3.4 40 1-43 1-41 (207)
215 1t5o_A EIF2BD, translation ini 43.3 76 0.0026 23.1 6.2 61 87-155 202-265 (351)
216 3g1w_A Sugar ABC transporter; 43.3 76 0.0026 21.6 7.3 73 77-157 20-95 (305)
217 3s5o_A 4-hydroxy-2-oxoglutarat 43.3 85 0.0029 22.2 7.4 64 93-156 83-150 (307)
218 1jkx_A GART;, phosphoribosylgl 43.2 71 0.0024 21.3 12.4 104 6-156 1-109 (212)
219 1sbz_A Probable aromatic acid 43.0 44 0.0015 22.1 4.6 35 6-42 1-35 (197)
220 3gt7_A Sensor protein; structu 42.9 54 0.0018 19.8 7.6 67 81-157 21-90 (154)
221 3h5d_A DHDPS, dihydrodipicolin 42.7 88 0.003 22.2 8.1 64 93-156 76-142 (311)
222 2qvg_A Two component response 42.3 30 0.001 20.4 3.5 38 116-157 58-98 (143)
223 3cg0_A Response regulator rece 42.2 50 0.0017 19.2 7.8 49 106-157 43-91 (140)
224 4fbk_A DNA repair and telomere 42.2 35 0.0012 26.0 4.4 19 107-125 105-123 (472)
225 3rot_A ABC sugar transporter, 41.8 80 0.0028 21.5 8.1 74 76-157 18-95 (297)
226 3nvt_A 3-deoxy-D-arabino-heptu 41.8 1E+02 0.0035 22.8 6.7 104 18-157 155-258 (385)
227 3lua_A Response regulator rece 41.8 52 0.0018 19.3 5.4 49 106-157 38-90 (140)
228 3heb_A Response regulator rece 41.8 52 0.0018 19.6 4.7 40 114-157 56-98 (152)
229 3tdn_A FLR symmetric alpha-bet 41.6 61 0.0021 21.8 5.3 48 107-154 38-85 (247)
230 3kl4_A SRP54, signal recogniti 41.1 1.1E+02 0.0038 22.9 7.4 23 108-130 170-192 (433)
231 3nhm_A Response regulator; pro 41.1 51 0.0018 19.0 4.8 49 105-157 35-86 (133)
232 2qjg_A Putative aldolase MJ040 40.9 84 0.0029 21.4 7.1 68 78-155 132-209 (273)
233 3eod_A Protein HNR; response r 40.7 52 0.0018 18.9 8.1 66 82-157 22-88 (130)
234 3e61_A Putative transcriptiona 40.6 80 0.0027 21.1 7.5 72 75-157 22-95 (277)
235 1gpm_A GMP synthetase, XMP ami 40.4 83 0.0028 24.2 6.4 36 6-46 228-263 (525)
236 1vr6_A Phospho-2-dehydro-3-deo 40.2 1.1E+02 0.0036 22.4 8.6 106 16-157 117-222 (350)
237 2ohh_A Type A flavoprotein FPR 40.2 1E+02 0.0035 22.2 10.3 89 7-127 227-317 (404)
238 3kyj_B CHEY6 protein, putative 40.2 57 0.0019 19.3 7.2 67 81-156 27-95 (145)
239 1viz_A PCRB protein homolog; s 39.9 32 0.0011 23.6 3.6 46 107-155 23-68 (240)
240 2d1p_B TUSC, hypothetical UPF0 39.8 12 0.00043 22.3 1.4 39 5-46 1-43 (119)
241 3l49_A ABC sugar (ribose) tran 39.7 85 0.0029 21.1 8.4 73 77-157 21-95 (291)
242 3blx_B Isocitrate dehydrogenas 39.0 1.1E+02 0.0038 22.3 7.3 81 14-124 161-243 (354)
243 3qvl_A Putative hydantoin race 38.9 32 0.0011 23.5 3.5 19 114-132 171-189 (245)
244 1p3y_1 MRSD protein; flavoprot 38.8 41 0.0014 22.2 3.9 35 5-42 8-42 (194)
245 2p10_A MLL9387 protein; putati 38.7 99 0.0034 21.9 5.9 72 76-153 13-99 (286)
246 1ii7_A MRE11 nuclease; RAD50, 38.4 54 0.0019 23.2 4.8 9 141-149 95-103 (333)
247 3rfq_A Pterin-4-alpha-carbinol 38.3 82 0.0028 20.5 5.7 41 82-124 53-96 (185)
248 3qi7_A Putative transcriptiona 38.1 1.2E+02 0.004 22.3 6.8 44 79-126 75-120 (371)
249 3kbq_A Protein TA0487; structu 38.1 77 0.0026 20.4 5.1 41 82-124 27-69 (172)
250 3ilh_A Two component response 38.0 61 0.0021 19.0 7.4 68 82-157 24-101 (146)
251 3mtq_A Putative phosphoenolpyr 37.8 77 0.0026 20.1 7.5 88 3-124 19-108 (159)
252 2q9u_A A-type flavoprotein; fl 37.8 1.2E+02 0.0039 22.1 8.6 49 77-129 271-319 (414)
253 3o3m_A Alpha subunit 2-hydroxy 37.6 28 0.00095 25.8 3.2 52 104-155 321-372 (408)
254 3dbi_A Sugar-binding transcrip 37.5 1E+02 0.0035 21.4 9.6 71 77-156 79-151 (338)
255 1w3i_A EDA, 2-keto-3-deoxy glu 37.4 43 0.0015 23.5 4.1 52 104-155 76-130 (293)
256 1zco_A 2-dehydro-3-deoxyphosph 37.0 1E+02 0.0035 21.3 9.2 106 16-157 34-139 (262)
257 3egc_A Putative ribose operon 36.8 96 0.0033 20.9 10.4 72 76-157 23-96 (291)
258 2iv0_A Isocitrate dehydrogenas 36.7 1.3E+02 0.0045 22.5 7.8 28 16-44 197-224 (412)
259 4fe7_A Xylose operon regulator 36.5 92 0.0032 22.6 6.0 66 76-155 39-104 (412)
260 4fbw_A DNA repair protein RAD3 36.5 32 0.0011 25.7 3.4 12 146-157 118-129 (417)
261 1vzw_A Phosphoribosyl isomeras 36.4 94 0.0032 20.7 6.7 49 106-154 148-196 (244)
262 2r91_A 2-keto-3-deoxy-(6-phosp 36.4 43 0.0015 23.4 3.9 52 104-155 75-129 (286)
263 2w6r_A Imidazole glycerol phos 36.2 80 0.0027 21.4 5.3 48 107-154 33-80 (266)
264 3t6k_A Response regulator rece 35.9 66 0.0023 18.8 7.1 48 106-157 37-87 (136)
265 1e5d_A Rubredoxin\:oxygen oxid 35.8 1.2E+02 0.0042 21.8 11.6 45 79-127 269-313 (402)
266 3exr_A RMPD (hexulose-6-phosph 35.7 68 0.0023 21.4 4.7 27 1-28 1-27 (221)
267 3gv0_A Transcriptional regulat 35.6 1E+02 0.0035 20.8 8.4 71 77-157 26-98 (288)
268 1mkz_A Molybdenum cofactor bio 35.6 86 0.0029 20.0 5.6 41 82-124 32-76 (172)
269 2nuw_A 2-keto-3-deoxygluconate 35.4 44 0.0015 23.4 3.9 52 104-155 76-130 (288)
270 2g2c_A Putative molybdenum cof 35.3 79 0.0027 20.0 4.8 36 87-124 38-76 (167)
271 2y88_A Phosphoribosyl isomeras 35.2 63 0.0021 21.6 4.6 48 107-154 152-199 (244)
272 2r48_A Phosphotransferase syst 35.1 51 0.0017 19.5 3.5 44 80-127 22-67 (106)
273 2j48_A Two-component sensor ki 35.0 59 0.002 17.9 7.9 48 106-157 34-84 (119)
274 3uow_A GMP synthetase; structu 34.7 1.6E+02 0.0055 22.8 7.8 38 5-47 255-292 (556)
275 2m1z_A LMO0427 protein; homolo 34.2 37 0.0013 20.1 2.8 45 80-128 22-68 (106)
276 1wot_A Putative minimal nucleo 34.2 17 0.0006 20.8 1.4 69 77-154 10-78 (98)
277 1thf_D HISF protein; thermophI 34.2 92 0.0032 20.9 5.3 49 106-154 153-201 (253)
278 3o74_A Fructose transport syst 34.2 1E+02 0.0035 20.4 8.7 73 76-157 17-91 (272)
279 3n0r_A Response regulator; sig 34.0 1.2E+02 0.004 21.0 7.7 66 80-156 173-241 (286)
280 3qxc_A Dethiobiotin synthetase 33.8 61 0.0021 22.1 4.3 40 116-156 130-169 (242)
281 3u7q_B Nitrogenase molybdenum- 33.8 1.2E+02 0.004 23.4 6.2 29 99-127 420-448 (523)
282 2xdq_A Light-independent proto 33.4 28 0.00095 26.1 2.7 45 103-147 113-158 (460)
283 1b93_A Protein (methylglyoxal 33.3 92 0.0031 19.7 4.7 61 90-152 56-117 (152)
284 3i65_A Dihydroorotate dehydrog 33.3 1.5E+02 0.0052 22.1 8.9 62 94-155 269-352 (415)
285 3hs3_A Ribose operon repressor 33.3 1.1E+02 0.0038 20.5 6.9 68 75-157 24-94 (277)
286 3dz1_A Dihydrodipicolinate syn 33.2 1.3E+02 0.0044 21.3 9.2 62 93-155 76-141 (313)
287 1nmo_A Hypothetical protein YB 33.1 83 0.0028 21.5 4.9 31 3-42 33-63 (247)
288 1vs1_A 3-deoxy-7-phosphoheptul 33.1 1.2E+02 0.0043 21.1 7.5 105 17-157 50-154 (276)
289 3b2n_A Uncharacterized protein 33.0 73 0.0025 18.4 7.7 47 107-157 39-86 (133)
290 2yvt_A Hypothetical protein AQ 32.9 58 0.002 21.7 4.1 21 106-126 21-41 (260)
291 1o60_A 2-dehydro-3-deoxyphosph 32.8 1.3E+02 0.0044 21.2 6.3 64 80-157 78-141 (292)
292 2b4a_A BH3024; flavodoxin-like 32.6 75 0.0026 18.4 5.9 46 106-155 48-95 (138)
293 2rjn_A Response regulator rece 32.4 81 0.0028 18.8 6.8 65 82-156 22-87 (154)
294 2kyr_A Fructose-like phosphotr 32.4 67 0.0023 19.1 3.7 47 79-127 24-70 (111)
295 3miz_A Putative transcriptiona 32.2 1.1E+02 0.0037 20.8 5.5 66 79-155 32-99 (301)
296 3kke_A LACI family transcripti 32.2 1.2E+02 0.0041 20.7 8.8 70 77-157 31-103 (303)
297 2xw6_A MGS, methylglyoxal synt 32.0 89 0.003 19.3 4.4 61 90-152 48-109 (134)
298 3pzy_A MOG; ssgcid, seattle st 32.0 62 0.0021 20.5 3.9 40 82-124 31-73 (164)
299 1o2d_A Alcohol dehydrogenase, 31.9 1.1E+02 0.0037 22.2 5.6 44 80-125 58-107 (371)
300 3n53_A Response regulator rece 31.5 79 0.0027 18.4 4.6 49 105-157 34-85 (140)
301 3mm4_A Histidine kinase homolo 31.3 1.1E+02 0.0036 19.7 7.6 37 117-157 119-160 (206)
302 1wpw_A 3-isopropylmalate dehyd 31.3 1.5E+02 0.0051 21.5 7.9 77 15-124 143-219 (336)
303 3rqi_A Response regulator prot 31.1 98 0.0034 19.3 7.0 64 82-157 22-88 (184)
304 3k4h_A Putative transcriptiona 31.1 1.2E+02 0.0041 20.3 8.2 72 76-157 28-101 (292)
305 3zwt_A Dihydroorotate dehydrog 30.9 1.6E+02 0.0053 21.5 10.3 62 94-155 221-305 (367)
306 3pm6_A Putative fructose-bisph 30.8 75 0.0025 22.7 4.4 59 96-154 29-88 (306)
307 1rrm_A Lactaldehyde reductase; 30.8 1E+02 0.0034 22.5 5.3 45 79-125 47-97 (386)
308 3qk7_A Transcriptional regulat 30.5 1.3E+02 0.0044 20.4 10.1 72 75-156 24-96 (294)
309 1xrs_B D-lysine 5,6-aminomutas 30.5 1E+02 0.0036 21.4 5.0 25 104-128 167-191 (262)
310 3tho_B Exonuclease, putative; 30.5 71 0.0024 23.2 4.4 25 78-106 30-54 (379)
311 2amj_A Modulator of drug activ 30.2 1.2E+02 0.0039 19.8 6.6 50 74-127 30-80 (204)
312 3av0_A DNA double-strand break 30.1 32 0.0011 25.1 2.5 12 37-48 20-31 (386)
313 1mb3_A Cell division response 30.1 78 0.0027 17.8 6.3 46 107-156 35-83 (124)
314 4dad_A Putative pilus assembly 30.0 87 0.003 18.4 5.8 52 102-157 51-104 (146)
315 2yvq_A Carbamoyl-phosphate syn 29.9 99 0.0034 19.0 4.5 63 86-152 62-129 (143)
316 2l82_A Designed protein OR32; 29.7 91 0.0031 18.5 8.3 100 6-125 2-111 (162)
317 3cnb_A DNA-binding response re 29.7 85 0.0029 18.2 6.3 48 106-157 43-93 (143)
318 4a17_F RPL7A, 60S ribosomal pr 29.7 97 0.0033 21.5 4.6 47 106-156 129-175 (255)
319 2zki_A 199AA long hypothetical 29.5 58 0.002 20.8 3.5 43 1-46 1-43 (199)
320 2hmc_A AGR_L_411P, dihydrodipi 29.5 1.6E+02 0.0055 21.3 7.5 62 94-155 93-158 (344)
321 3kto_A Response regulator rece 29.5 86 0.003 18.2 4.8 67 82-157 21-89 (136)
322 2yyb_A Hypothetical protein TT 29.5 78 0.0027 21.5 4.2 30 4-42 35-64 (242)
323 3l4e_A Uncharacterized peptida 29.4 35 0.0012 22.7 2.4 42 80-125 46-87 (206)
324 3inp_A D-ribulose-phosphate 3- 29.2 1.4E+02 0.0048 20.4 5.7 58 81-142 124-181 (246)
325 3dfi_A Pseudoaglycone deacetyl 29.2 1.4E+02 0.0048 20.5 10.2 50 105-154 133-182 (270)
326 1mio_B Nitrogenase molybdenum 29.1 1.8E+02 0.0062 21.8 8.2 28 99-126 367-394 (458)
327 3nkl_A UDP-D-quinovosamine 4-d 29.0 77 0.0026 18.9 3.9 35 5-47 4-38 (141)
328 1zcz_A Bifunctional purine bio 29.0 58 0.002 24.7 3.6 39 85-127 421-461 (464)
329 2r4q_A Phosphotransferase syst 29.0 51 0.0017 19.5 2.8 43 81-127 23-67 (106)
330 2lpm_A Two-component response 28.6 82 0.0028 18.8 3.8 44 106-156 42-87 (123)
331 1s8n_A Putative antiterminator 28.6 1.1E+02 0.0039 19.3 8.4 45 107-155 48-92 (205)
332 3hzh_A Chemotaxis response reg 28.5 99 0.0034 18.5 8.1 48 106-157 70-120 (157)
333 3uhj_A Probable glycerol dehyd 28.3 1.1E+02 0.0038 22.4 5.1 70 79-158 67-140 (387)
334 1jlj_A Gephyrin; globular alph 28.3 1.2E+02 0.0043 19.6 5.5 40 83-124 39-85 (189)
335 3hdg_A Uncharacterized protein 28.1 91 0.0031 18.0 6.7 48 106-157 40-88 (137)
336 1ka9_F Imidazole glycerol phos 27.7 1.2E+02 0.0043 20.2 5.1 48 107-154 155-202 (252)
337 2qsj_A DNA-binding response re 27.6 1E+02 0.0034 18.3 5.5 48 106-157 38-87 (154)
338 1jq5_A Glycerol dehydrogenase; 27.5 1.7E+02 0.0059 21.0 7.1 70 79-158 46-120 (370)
339 3r7f_A Aspartate carbamoyltran 27.1 1.1E+02 0.0039 21.7 4.8 33 111-152 86-118 (304)
340 2a5l_A Trp repressor binding p 27.1 1.2E+02 0.0042 19.2 5.5 13 116-128 70-82 (200)
341 3rjz_A N-type ATP pyrophosphat 26.8 1.5E+02 0.0052 20.1 10.5 90 6-125 5-98 (237)
342 3o3m_B Beta subunit 2-hydroxya 26.6 76 0.0026 23.2 4.0 51 104-155 300-350 (385)
343 3cu2_A Ribulose-5-phosphate 3- 26.6 1.5E+02 0.0052 20.1 5.3 45 79-126 173-219 (237)
344 1xhf_A DYE resistance, aerobic 26.6 91 0.0031 17.5 7.3 48 106-157 36-83 (123)
345 1rtt_A Conserved hypothetical 26.5 88 0.003 19.9 4.0 36 7-45 8-46 (193)
346 2eq5_A 228AA long hypothetical 26.2 1E+02 0.0035 20.3 4.4 11 116-126 74-84 (228)
347 3grf_A Ornithine carbamoyltran 26.2 1.8E+02 0.0063 20.9 6.1 27 117-152 100-126 (328)
348 2q62_A ARSH; alpha/beta, flavo 26.2 1.6E+02 0.0053 20.1 5.8 47 79-129 53-110 (247)
349 3hcw_A Maltose operon transcri 26.0 1.6E+02 0.0053 20.0 8.3 73 75-157 26-100 (295)
350 2oqr_A Sensory transduction pr 26.0 1.4E+02 0.0046 19.3 7.6 46 107-156 38-83 (230)
351 3jyf_A 2',3'-cyclic nucleotide 25.9 1.8E+02 0.0063 20.8 6.1 12 116-127 233-244 (339)
352 3ipr_A PTS system, IIA compone 25.9 1.2E+02 0.0042 18.8 7.7 39 5-47 1-39 (150)
353 3ksm_A ABC-type sugar transpor 25.7 1.5E+02 0.0051 19.6 8.1 72 77-156 16-92 (276)
354 2gwr_A DNA-binding response re 25.6 1.4E+02 0.0049 19.4 7.8 45 108-156 40-84 (238)
355 2w6r_A Imidazole glycerol phos 25.6 1.6E+02 0.0054 19.9 5.5 49 106-154 158-206 (266)
356 3zzm_A Bifunctional purine bio 25.5 72 0.0025 24.7 3.7 38 86-127 481-520 (523)
357 1qgu_B Protein (nitrogenase mo 25.5 2.3E+02 0.0078 21.7 7.3 30 98-127 415-444 (519)
358 1lfd_A Ralgds; RAL, effector i 25.4 1E+02 0.0034 17.5 4.3 43 4-48 17-60 (87)
359 3j21_Z 50S ribosomal protein L 25.2 1E+02 0.0035 17.5 4.0 19 108-126 22-40 (99)
360 3q94_A Fructose-bisphosphate a 25.1 1.3E+02 0.0044 21.2 4.8 51 104-154 32-86 (288)
361 1gvf_A Tagatose-bisphosphate a 25.1 74 0.0025 22.4 3.5 52 104-155 29-81 (286)
362 1xrs_A D-lysine 5,6-aminomutas 25.0 2.3E+02 0.0079 21.6 9.0 48 93-140 150-200 (516)
363 3p52_A NH(3)-dependent NAD(+) 25.0 1.7E+02 0.0057 19.9 7.8 37 4-45 25-61 (249)
364 2vef_A Dihydropteroate synthas 24.8 1.8E+02 0.0062 20.7 5.5 106 18-156 32-137 (314)
365 1jfl_A Aspartate racemase; alp 24.8 48 0.0016 22.1 2.5 21 109-129 66-86 (228)
366 2pln_A HP1043, response regula 24.7 1.1E+02 0.0037 17.7 7.4 44 106-157 51-95 (137)
367 2a9o_A Response regulator; ess 24.7 98 0.0033 17.2 7.8 47 107-157 35-81 (120)
368 3ctl_A D-allulose-6-phosphate 24.7 1.6E+02 0.0056 19.8 6.0 43 80-126 95-137 (231)
369 4ehi_A Bifunctional purine bio 24.6 77 0.0026 24.6 3.7 37 87-127 493-531 (534)
370 3gbv_A Putative LACI-family tr 24.6 1.6E+02 0.0056 19.7 6.9 71 78-156 26-102 (304)
371 1g8m_A Aicar transformylase-IM 24.5 1.3E+02 0.0045 23.6 5.0 38 86-127 551-590 (593)
372 3of5_A Dethiobiotin synthetase 24.4 1.1E+02 0.0038 20.4 4.3 21 3-23 2-22 (228)
373 1uan_A Hypothetical protein TT 24.4 1.6E+02 0.0055 19.6 10.0 37 105-141 83-119 (227)
374 1jbe_A Chemotaxis protein CHEY 24.4 1E+02 0.0036 17.4 5.8 48 106-157 38-88 (128)
375 3q0i_A Methionyl-tRNA formyltr 24.4 2E+02 0.0067 20.5 8.2 40 83-127 55-95 (318)
376 2fn9_A Ribose ABC transporter, 24.4 1.6E+02 0.0056 19.7 8.9 72 77-156 18-91 (290)
377 3q9s_A DNA-binding response re 24.3 1.6E+02 0.0055 19.5 7.7 66 82-157 52-117 (249)
378 2zsk_A PH1733, 226AA long hypo 24.2 57 0.0019 21.7 2.8 9 117-125 73-81 (226)
379 2rgy_A Transcriptional regulat 24.2 1.7E+02 0.0057 19.7 8.2 70 77-156 24-98 (290)
380 1k66_A Phytochrome response re 24.2 1.1E+02 0.0039 17.7 5.9 38 116-157 61-101 (149)
381 3ih5_A Electron transfer flavo 24.1 1.6E+02 0.0056 19.5 6.0 80 74-156 19-99 (217)
382 3jte_A Response regulator rece 24.1 1.1E+02 0.0039 17.7 7.5 49 104-157 35-86 (143)
383 1uuy_A CNX1, molybdopterin bio 24.1 1.4E+02 0.0048 18.8 5.6 31 94-124 44-78 (167)
384 4hb7_A Dihydropteroate synthas 24.0 1.9E+02 0.0065 20.2 9.3 106 18-157 29-134 (270)
385 2rjo_A Twin-arginine transloca 23.9 1.8E+02 0.0062 20.0 6.1 72 77-156 21-96 (332)
386 1ycg_A Nitric oxide reductase; 23.9 2E+02 0.0069 20.5 11.1 45 79-127 268-312 (398)
387 2pbq_A Molybdenum cofactor bio 23.8 1.5E+02 0.0051 19.0 5.3 33 89-124 39-75 (178)
388 3fgn_A Dethiobiotin synthetase 23.6 93 0.0032 21.3 3.8 40 116-156 125-165 (251)
389 1zgz_A Torcad operon transcrip 23.5 1.1E+02 0.0036 17.2 7.8 48 106-157 35-82 (122)
390 3bzc_A TEX; helix-turn-helix, 23.4 48 0.0016 27.1 2.5 47 106-156 372-421 (785)
391 1tjy_A Sugar transport protein 23.4 1.9E+02 0.0063 19.9 7.5 71 78-156 20-93 (316)
392 2xdq_B Light-independent proto 23.3 64 0.0022 24.7 3.2 11 103-113 104-114 (511)
393 3d03_A Phosphohydrolase; glyce 23.3 1.6E+02 0.0055 19.5 5.0 8 120-127 75-82 (274)
394 1i3c_A Response regulator RCP1 23.3 1.2E+02 0.0042 17.9 6.0 38 116-157 60-100 (149)
395 3h75_A Periplasmic sugar-bindi 23.2 1.9E+02 0.0066 20.1 8.3 72 77-157 20-95 (350)
396 1vmd_A MGS, methylglyoxal synt 23.2 1.6E+02 0.0055 19.2 5.4 60 90-152 72-133 (178)
397 1t57_A Conserved protein MTH16 23.2 1.7E+02 0.0059 19.5 5.4 75 74-153 34-110 (206)
398 3dms_A Isocitrate dehydrogenas 23.0 63 0.0022 24.3 3.0 27 16-43 214-240 (427)
399 2fyw_A Conserved hypothetical 23.0 61 0.0021 22.4 2.8 29 96-124 38-66 (267)
400 3izc_H 60S ribosomal protein R 22.9 1.4E+02 0.0049 20.7 4.5 47 106-156 136-182 (256)
401 2fvy_A D-galactose-binding per 22.9 1.8E+02 0.0062 19.6 7.9 72 77-156 18-92 (309)
402 1srr_A SPO0F, sporulation resp 22.9 1.1E+02 0.0038 17.2 6.5 46 107-156 37-83 (124)
403 3kjx_A Transcriptional regulat 22.8 2E+02 0.0067 20.0 8.0 67 78-154 85-153 (344)
404 1kjq_A GART 2, phosphoribosylg 22.8 2.1E+02 0.0073 20.4 8.6 37 1-44 7-43 (391)
405 2rff_A Putative nucleotidyltra 22.7 1.2E+02 0.0042 17.6 4.3 43 79-126 19-61 (111)
406 1zmr_A Phosphoglycerate kinase 22.6 1.3E+02 0.0044 22.3 4.4 47 110-156 44-94 (387)
407 3uhf_A Glutamate racemase; str 22.5 45 0.0016 23.3 2.0 9 39-47 51-59 (274)
408 3ayv_A Putative uncharacterize 22.5 1.7E+02 0.0059 19.3 7.3 80 19-117 75-154 (254)
409 3g85_A Transcriptional regulat 22.5 1.8E+02 0.0061 19.4 7.3 71 77-157 28-100 (289)
410 3hut_A Putative branched-chain 22.4 2E+02 0.0068 20.0 9.4 47 78-126 154-203 (358)
411 3jvd_A Transcriptional regulat 22.4 2E+02 0.0069 20.0 6.6 65 76-156 79-144 (333)
412 2d4v_A Isocitrate dehydrogenas 22.3 67 0.0023 24.2 3.0 28 16-44 204-231 (429)
413 2wte_A CSA3; antiviral protein 22.2 1.9E+02 0.0065 19.6 10.2 88 4-122 7-98 (244)
414 1xv5_A AGT, DNA alpha-glucosyl 22.2 1.6E+02 0.0054 20.0 4.5 59 96-157 56-116 (401)
415 3psf_A Transcription elongatio 22.2 82 0.0028 26.7 3.7 49 107-158 568-624 (1030)
416 3brs_A Periplasmic binding pro 22.1 1.8E+02 0.0062 19.4 6.6 71 78-156 24-98 (289)
417 3ecs_A Translation initiation 22.0 2.2E+02 0.0076 20.3 11.6 59 87-155 168-230 (315)
418 3ib7_A ICC protein; metallopho 22.0 58 0.002 22.6 2.6 22 25-48 15-36 (330)
419 1to6_A Glycerate kinase; glyce 21.6 1.5E+02 0.005 21.9 4.6 38 116-155 277-316 (371)
420 3huu_A Transcription regulator 21.6 2E+02 0.0067 19.5 7.8 73 75-157 41-115 (305)
421 3s81_A Putative aspartate race 21.6 84 0.0029 21.8 3.2 35 110-152 92-126 (268)
422 3c3m_A Response regulator rece 21.5 1.3E+02 0.0044 17.4 6.9 46 107-156 37-85 (138)
423 2ffh_A Protein (FFH); SRP54, s 21.5 2.6E+02 0.0088 20.9 9.1 23 109-131 172-194 (425)
424 2e0c_A 409AA long hypothetical 21.2 72 0.0025 23.8 2.9 30 15-45 196-225 (409)
425 2gzm_A Glutamate racemase; enz 21.2 62 0.0021 22.3 2.5 29 13-47 10-38 (267)
426 1zuw_A Glutamate racemase 1; ( 21.2 62 0.0021 22.4 2.5 28 13-46 10-37 (272)
427 2qkf_A 3-deoxy-D-manno-octulos 21.0 2.2E+02 0.0075 19.9 6.2 64 80-157 75-138 (280)
428 2xgg_A Microneme protein 2; A/ 21.0 1E+02 0.0035 19.3 3.4 38 6-45 124-161 (178)
429 2xed_A Putative maleate isomer 20.9 96 0.0033 21.4 3.5 17 114-130 204-221 (273)
430 3u7q_A Nitrogenase molybdenum- 20.9 69 0.0024 24.4 2.9 27 103-129 160-187 (492)
431 1a3w_A Pyruvate kinase; allost 20.9 2E+02 0.0068 22.1 5.3 44 105-157 382-426 (500)
432 2rdm_A Response regulator rece 20.7 1.3E+02 0.0044 17.1 8.2 49 106-157 38-88 (132)
433 3g3k_A Glutamate receptor, ion 20.6 1.5E+02 0.0051 19.4 4.4 36 87-124 44-89 (259)
434 2oho_A Glutamate racemase; iso 20.6 57 0.002 22.5 2.2 7 40-46 40-46 (273)
435 1tif_A IF3-N, translation init 20.6 1.2E+02 0.0041 16.8 3.2 31 105-135 30-60 (78)
436 3gg8_A Pyruvate kinase; malari 20.5 2.2E+02 0.0075 22.0 5.5 44 104-156 396-440 (511)
437 3mcm_A 2-amino-4-hydroxy-6-hyd 20.5 2.8E+02 0.0096 20.9 6.5 55 94-157 270-324 (442)
438 3v7e_A Ribosome-associated pro 20.5 65 0.0022 17.7 2.1 17 108-124 18-34 (82)
439 4hqo_A Sporozoite surface prot 20.4 98 0.0033 21.1 3.4 38 6-45 127-164 (266)
440 2qzj_A Two-component response 20.4 1.4E+02 0.0047 17.3 7.9 66 82-157 19-84 (136)
441 2pjk_A 178AA long hypothetical 20.4 1.8E+02 0.0061 18.6 5.6 41 82-124 44-88 (178)
442 1a2o_A CHEB methylesterase; ba 20.4 2.4E+02 0.0083 20.2 9.0 44 107-156 39-84 (349)
443 2etv_A Iron(III) ABC transport 20.2 1E+02 0.0034 22.0 3.5 34 114-156 93-126 (346)
444 3lfh_A Manxa, phosphotransfera 20.1 1.6E+02 0.0056 18.1 7.9 38 6-47 4-41 (144)
445 3psi_A Transcription elongatio 20.1 94 0.0032 26.9 3.7 49 107-158 565-621 (1219)
446 3hqn_D Pyruvate kinase, PK; TI 20.1 2.3E+02 0.0077 21.8 5.5 43 105-156 381-424 (499)
447 3pdi_A Nitrogenase MOFE cofact 20.1 49 0.0017 25.1 1.9 25 103-127 138-163 (483)
448 3ist_A Glutamate racemase; str 20.0 78 0.0027 22.0 2.8 30 12-47 11-40 (269)
No 1
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.97 E-value=1.1e-29 Score=168.04 Aligned_cols=154 Identities=22% Similarity=0.231 Sum_probs=120.7
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCC----CCcCCCCCCccc-chh--HHHHHHHHHH
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLP----VHSSFDAAGYIF-SND--VIKAVEKYAS 73 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~----~~~~~~~~~~~~-~~~--~~~~~~~~~~ 73 (160)
|..++++||||+|+|+.+..|+++|+.+|+..+ ++|+++||+++.. ....+....... +.. ......+...
T Consensus 1 M~~~~~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T 1mjh_A 1 MSVMYKKILYPTDFSETAEIALKHVKAFKTLKA--EEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLT 78 (162)
T ss_dssp --CCCCEEEEECCSCHHHHHHHHHHHHTCCSSC--CEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHH
T ss_pred CccccceEEEEeCCCHHHHHHHHHHHHHHhhcC--CeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHH
Confidence 666789999999999999999999999999988 8999999997541 000110000000 110 0223445555
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
+..++.++.+.+.+...| +++++.+..|++.+.|+++++++++|+||||+++++++.++++||++++|+++++||||+
T Consensus 79 ~~~~~~l~~~~~~~~~~g--~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlv 156 (162)
T 1mjh_A 79 EEAKNKMENIKKELEDVG--FKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLV 156 (162)
T ss_dssp HHHHHHHHHHHHHHHHTT--CEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHHHHHHHcC--CceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEE
Confidence 667777888888888888 888888889999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 031383 154 VKHPE 158 (160)
Q Consensus 154 v~~~~ 158 (160)
||+..
T Consensus 157 v~~~~ 161 (162)
T 1mjh_A 157 VKRKN 161 (162)
T ss_dssp ECCCC
T ss_pred EeCCC
Confidence 99764
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.97 E-value=1.2e-29 Score=164.95 Aligned_cols=142 Identities=20% Similarity=0.328 Sum_probs=122.4
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
.++++||||+|+|+.+..|+++|+.+|+..+ ++|+++||++....... ..........+...+..++.++.
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~ 73 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQ--ANLTALYVVDDSAYHTP-------ALDPVLSELLDAEAAHAKDAMRQ 73 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEECCCCCCG-------GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCcccccc-------ccccccHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999988 89999999987644211 01113444555666777788888
Q ss_pred HHHHHHhcCCcc-eEEEEEecCChhhHHHH-HhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 83 AEAVYRNFQNNI-HVKRVVGCGDAKDVICG-TVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~-~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.+.+.+.| + .+++.+..|++.+.|++ ++++.++|+||||+++++.+.++++||++++++++++||||+||
T Consensus 74 ~~~~~~~~g--~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 74 RQQFVATTS--APNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHHTTSS--CCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHhcC--CcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 888888888 8 88999999999999999 99999999999999999999999999999999999999999997
No 3
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.3e-29 Score=168.89 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=115.4
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccc--hhHHHHHHHHHHHHHHH
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFS--NDVIKAVEKYASESVNS 78 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 78 (160)
|..++++||||+|+|+.+..|+++|+.+|+..+ ++|+++||++..............+. ........+...+..++
T Consensus 1 M~~m~~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T 2dum_A 1 MIFMFRKVLFPTDFSEGAYRAVEVFEKRNKMEV--GEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASR 78 (170)
T ss_dssp ---CCSEEEEECCSSHHHHHHHHHHHHHCCSCC--SEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHH
T ss_pred CccccceEEEEecCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 667889999999999999999999999999988 89999999875432111000000000 00001122334455566
Q ss_pred HHHHHHHHHHhcCCcceEEE--EEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKR--VVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.++.+.+.+...+ +.+++ .+..|++.+.|+++++++++|+||||+++++++.++++||++++|+++++|||||||+
T Consensus 79 ~l~~~~~~~~~~g--~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~ 156 (170)
T 2dum_A 79 KLQEKAEEVKRAF--RAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKE 156 (170)
T ss_dssp HHHHHHHHHHHHT--TCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHHcC--CceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEcc
Confidence 6777777777777 77776 8888999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 031383 157 PEE 159 (160)
Q Consensus 157 ~~~ 159 (160)
...
T Consensus 157 ~~~ 159 (170)
T 2dum_A 157 VDE 159 (170)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 4
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.96 E-value=1.9e-28 Score=157.95 Aligned_cols=136 Identities=20% Similarity=0.301 Sum_probs=116.0
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhc-CCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHH-HHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNL-FSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYAS-ESVNSVMNR 82 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a-~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (160)
|++||||+|+|+.+..|+++|+.+| +..+ ++|+++|+.+...... ..........+... +..++.++.
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDAD--CTLTLIHVKPEFMLYG--------EAVLAAYDEIEMKEEEKAKLLTQK 70 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTT--EEEEEEEEECCCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCC--CEEEEEEEecCCCccc--------ccccCcHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999 8888 8999999998764321 01112223344445 677788888
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.+.+...+ +++++.+..|++.+.|+++++ ++|+||||+++++++.+++ ||++++++++++||||+||
T Consensus 71 ~~~~~~~~g--~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 71 FSTFFTEKG--INPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHTTT--CCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHHCC--CCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 888888888 888999999999999999999 9999999999999999999 9999999999999999997
No 5
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.96 E-value=5.5e-28 Score=158.93 Aligned_cols=139 Identities=20% Similarity=0.255 Sum_probs=116.8
Q ss_pred CCceEEEEEec--CChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVD--ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (160)
Q Consensus 3 ~~~~~Ilv~~d--~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
.++++||||+| +|+.+..|+++|+.+|+..+ ++|+++||++...... +. .......+...+..++.+
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~l 81 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYD--VPLGICSVLESEDINI-FD--------SLTPSKIQAKRKHVEDVV 81 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHT--CCEEEEEEECCCCTTC-CC--------SSHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEeCCCccc-cc--------cCCHHHHHHHHHHHHHHH
Confidence 35799999999 99999999999999999988 8999999998764321 11 112234455666777788
Q ss_pred HHHHHHHHhcCCcc-eEEEEEec-CChhhHHHHH-hhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 81 NRAEAVYRNFQNNI-HVKRVVGC-GDAKDVICGT-VEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~i~~~-a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.+.+.+.+.| + .+++.+.. |++.+.|+++ +++.++|+||||+++++++. .++||++++++++++||||+||
T Consensus 82 ~~~~~~~~~~g--~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 82 AEYVQLAEQRG--VNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp HHHHHHHHHHT--CSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHcC--CCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCCEEEeC
Confidence 88888888888 7 58888888 9999999999 99999999999999999997 5899999999999999999996
No 6
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.96 E-value=2.8e-29 Score=163.35 Aligned_cols=144 Identities=22% Similarity=0.249 Sum_probs=115.2
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+|++||||+|+|+.+..|+++|+.+|+..+ ++|+++|+++........... ..........+...+..++.++.+
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~ 75 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTG--AELYILCVFKHHSLLEASLSM---ARPEQLDIPDDALKDYATEIAVQA 75 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHC--CEEEEEEEECCHHHHHHTBSS---CCCGGGCCCTTHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCcccccccccc---cChhhhhhHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999988 899999999865311111000 001111112233445666777777
Q ss_pred HHHHHhcCCcceE---EEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 84 EAVYRNFQNNIHV---KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 84 ~~~~~~~~~~~~~---~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+.+.+.| +.+ ++.+..|++.+.|+++++++++|+||||+++++++.++++||++++++++++||||+|
T Consensus 76 ~~~~~~~g--~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 76 KTRATELG--VPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHTT--CCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHhcC--CCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 77887777 666 8889999999999999999999999999999999999999999999999999999986
No 7
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.96 E-value=2.2e-28 Score=162.17 Aligned_cols=144 Identities=23% Similarity=0.284 Sum_probs=111.8
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEE--EEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLL--YVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
.++++||||+|+|+.+..|+++|+.+|+ .+ ++|+++ ||.+......... .. .....+...+..++.+
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~--a~l~ll~a~v~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~l 83 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-AD--AKLIIASAYLPQHEDARAADI-----LK---DESYKVTGTAPIYEIL 83 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TT--SEEEEEEECCC----------------------------CCTHHHHH
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CC--CEEEEEEeeeccCcccccccc-----cc---cHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999 88 899999 8876543210000 00 1122233445566777
Q ss_pred HHHHHHHHhcCCcce-EEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 81 NRAEAVYRNFQNNIH-VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
+.+.+.+...+ ++ +++.+..|++.+.|++++++.++||||||+++++.+.++++||++++|+++++||||+||++..
T Consensus 84 ~~~~~~~~~~g--v~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~~~~ 161 (163)
T 1tq8_A 84 HDAKERAHNAG--AKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTTEG 161 (163)
T ss_dssp HHHHHHHHTTT--CCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECCC--
T ss_pred HHHHHHHHHcC--CCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeCCCC
Confidence 77777777777 87 8889999999999999999999999999999999999999999999999999999999997653
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.96 E-value=5.1e-28 Score=159.13 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=111.7
Q ss_pred CceEEEEEecC-ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDE-SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 4 ~~~~Ilv~~d~-s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
++++||||+|+ |+.+..|+++|+.+|+..+ ++|+++||.+..... . +...+..++.++.
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~--a~l~llhV~~~~~~~----------~--------~~~~~~~~~~l~~ 82 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRG--VPVYVVHSLPGGGRT----------K--------DEDIIEAKETLSW 82 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHT--CCEEEEEEECCSTTS----------C--------HHHHHHHHHHHHH
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEcCCCcc----------c--------HHHHHHHHHHHHH
Confidence 57999999999 9999999999999999988 899999999854321 0 2334456667777
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+.+.+.+.+..+.+...+..|++.+.|++++++.++|+||||+++++++.++++||++++++++++||||+|+
T Consensus 83 ~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 83 AVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp HHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 7778887883334444566789999999999999999999999999999999999999999999999999986
No 9
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.96 E-value=1.8e-27 Score=159.29 Aligned_cols=151 Identities=25% Similarity=0.433 Sum_probs=106.4
Q ss_pred CCceEEEEEecCCh---------HHHHHHHHHHHhcCC---CCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHH
Q 031383 3 TNERRVVVAVDESE---------ESMHALSWCLNNLFS---PDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEK 70 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~---------~s~~al~~a~~~a~~---~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (160)
..+++||||+|+|+ .+..|+++|+.++.. .+ ++|+++||++.......... .............+
T Consensus 3 ~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~--a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSD--FKILLLHVQVVDEDGFDDVD-SIYASPEDFRDMRQ 79 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTS--EEEEEEEEEC-----------CCCCSHHHHHHHTT
T ss_pred CCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCC--CEEEEEEEeecccccccccc-cccCCHHHHHHHHH
Confidence 46899999999999 999999999998744 46 89999999865422110000 00011222222223
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCC
Q 031383 71 YASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCP 150 (160)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~p 150 (160)
...+..++.++.+.+.+...+ +.+++.+..|++.+.|+++++++++||||||+++++++.++++||++++|+++++||
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~g--~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~p 157 (175)
T 2gm3_A 80 SNKAKGLHLLEFFVNKCHEIG--VGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECP 157 (175)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT--CEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHCC--CceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCC
Confidence 334455667777777777788 888888999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 031383 151 VVIVKHPE 158 (160)
Q Consensus 151 Vlvv~~~~ 158 (160)
||+||+..
T Consensus 158 Vlvv~~~~ 165 (175)
T 2gm3_A 158 VMTIKRNA 165 (175)
T ss_dssp EEEEECCG
T ss_pred EEEEcCCc
Confidence 99998753
No 10
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.95 E-value=9.9e-29 Score=161.39 Aligned_cols=145 Identities=21% Similarity=0.266 Sum_probs=98.4
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCc-CCCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHS-SFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
.++++||||+|+|+.+..|+++|+.+|+..+ ++|+++||++...... .+............ +...+..++.++
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~ 77 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQIG--ARLSLIHVLDNIPMPDTPYGTAIPLDTETTY----DAMLDVEKQKLS 77 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEC--------CTTCCCSSSCCCH----HHHHHHHHHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEEcCccccccccccccCcCHHHHH----HHHHHHHHHHHH
Confidence 3589999999999999999999999999988 8999999998653310 01100000011111 222223333333
Q ss_pred HHHHHHHhcCCcce-EEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 82 RAEAVYRNFQNNIH-VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
.+ .++.+ +. ++..+..|++.+.|+++++++++|+||||+++++++. +++||++++++++++||||+||+..+
T Consensus 78 ~~---~~~~~--~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~~~~d 150 (150)
T 3tnj_A 78 QI---GNTLG--IDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVRLRDD 150 (150)
T ss_dssp HH---HHHHT--CCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEECCC-
T ss_pred HH---HHHcC--CCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEeCCCC
Confidence 33 33445 44 4677888999999999999999999999999999999 99999999999999999999998753
No 11
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.95 E-value=9e-28 Score=154.69 Aligned_cols=136 Identities=21% Similarity=0.295 Sum_probs=103.7
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
++++||||+|+|+.+..|+++|..+|+..+ ++|+++||.++... .+.. . .. ....+...+..++.++.+
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~--~~~~---~-~~---~~~~~~~~~~~~~~l~~~ 69 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHG--ARLIVVHAYEPVPD--YLGE---P-FF---EEALRRRLERAEGVLEEA 69 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEECC-----------------------CHHHHHHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCCCc--cccc---c-ch---HHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999888 89999999974321 1110 0 00 111122233334444443
Q ss_pred HHHHHhcCCcc-eEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 84 EAVYRNFQNNI-HVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
.+. .| + .+++.+..|++.+.|+++++++++|+||||+++++++.++++||++++++++++||||+||
T Consensus 70 ~~~---~g--~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 70 RAL---TG--VPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHH---HC--CCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHH---cC--CCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 332 55 6 6666778899999999999999999999999999999999999999999999999999997
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.95 E-value=3.2e-27 Score=152.99 Aligned_cols=139 Identities=23% Similarity=0.318 Sum_probs=108.5
Q ss_pred eEEEEEecCChH--HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEE--SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 6 ~~Ilv~~d~s~~--s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
++||||+|+|+. +..|+++|+.+|+..+ ++|+++||++.......... ... . ..+...+..++.++.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~---~~~----~-~~~~~~~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDD--AEVHFLTVIPSLPYYASLGM---AYT----A-ELPGMDELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHT--CEEEEEEEECC------------------------CHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcC--CeEEEEEEecCCcccccccc---ccc----c-hhhhHHHHHHHHHHHH
Confidence 799999999999 9999999999999988 89999999987543211110 000 0 0122334455566667
Q ss_pred HHHHHhcCC-cceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 84 EAVYRNFQN-NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
.+.+++.+. .+.+++.+..|++.+.|+++++++++|+||||+++ +++.++++||++++++++++||||+||
T Consensus 72 ~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 777777752 35688999999999999999999999999999995 889999999999999999999999997
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.93 E-value=2.8e-26 Score=148.26 Aligned_cols=138 Identities=20% Similarity=0.275 Sum_probs=102.0
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC-CCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP-LPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
++++||||+|+|+.+..|+++|..+|+..+ ++|+++|+.+. ...+.. ..........+...+..++.
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--- 68 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHD--AKLSIIHVDVNFSDLYTG-------LIDVNMSSMQDRISTETQKA--- 68 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEECCGGGCCC-------CEEHHHHHHTTCCCCHHHHH---
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcC--CEEEEEEEecCchhhhcc-------ccccchHHHHHHHHHHHHHH---
Confidence 369999999999999999999999999888 89999999843 211110 01111111111111222233
Q ss_pred HHHHHHhcCCcceE-EEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 83 AEAVYRNFQNNIHV-KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
+....++.+ +.+ +..+..|++.+.|+++++++++|+||||++ ++++.+ +||++++++++++||||+||+..
T Consensus 69 l~~~~~~~~--~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 69 LLDLAESVD--YPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp HHHHHHHSS--SCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEEEECCC
T ss_pred HHHHHHHcC--CCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEEeeCCC
Confidence 333344456 555 567778999999999999999999999999 888877 48999999999999999999765
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.93 E-value=6.1e-25 Score=159.40 Aligned_cols=147 Identities=15% Similarity=0.133 Sum_probs=119.0
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
.+|++||||+|+|+.+..|++||+.+|+..+ ++|+++|+.+...... . ............+...+..++.++.
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRNG--GRIKAFLPVYDLSYDM--T---TLLSPDERNAMRKGVINQKTAWIKQ 77 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHHC--CEEEEEEEECCGGGGC--T---TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHHHcC--CeEEEEEEecccchhh--c---cccChhhHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999 8999999986532211 0 1112333444444555566667777
Q ss_pred HHHHHHhcCCcceEEEEEe-cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 83 AEAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
+.+.+...+ +.+++.+. .|++.+.|++++++.++||||||+++++.+.++++||++++++++++||||++|+..
T Consensus 78 ~~~~~~~~~--v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 78 QARYYLEAG--IQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKE 152 (319)
T ss_dssp HHHHHHHTT--CCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSC
T ss_pred HHHHHhhcC--CeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcc
Confidence 777777777 99999988 899999999999999999999999999999999999999999999999999998754
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.92 E-value=1.4e-25 Score=161.25 Aligned_cols=145 Identities=22% Similarity=0.182 Sum_probs=118.7
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
|..++++||||+|+|+.+..|+++|+.+|+..+ ++|+++|+++........ .........+...+..++.+
T Consensus 18 ~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l 88 (294)
T 3loq_A 18 LYFQSNAMLLPTDLSENSFKVLEYLGDFKKVGV--EEIGVLFVINLTKLSTVS-------GGIDIDHYIDEMSEKAEEVL 88 (294)
T ss_dssp CSSTTCEEEEECCSCTGGGGGGGGHHHHHHTTC--CEEEEECCEECTTC------------CCCTTHHHHHHHHHHHHHH
T ss_pred HHHhhccEEEecCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCccccccc-------ccccHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999999999988 899999999766432100 01112223344556667777
Q ss_pred HHHHHHHHhcCCcceEEE-EEe-cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 81 NRAEAVYRNFQNNIHVKR-VVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
+.+.+.+...| +.+++ .+. .|++.+.| ++++.++|+||||+++++.+.++++||++++++++++||||+||+..
T Consensus 89 ~~~~~~~~~~g--~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 164 (294)
T 3loq_A 89 PEVAQKIEAAG--IKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDM 164 (294)
T ss_dssp HHHHHHHHHTT--CEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCT
T ss_pred HHHHHHHHHcC--CCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCcc
Confidence 88888888888 88888 777 89999999 89999999999999999999999999999999999999999999764
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.92 E-value=4.5e-24 Score=154.43 Aligned_cols=142 Identities=21% Similarity=0.277 Sum_probs=113.9
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
.++++||||+|+|+.+..|+++|+.+|+..+ ++|+++|++++....+.. ..... ...+...+..++.++.
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~l~~ 86 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRK--IPLTLVHAVSPEVATWLE----VPLPP----GVLRWQQDHGRHLIDD 86 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHT--CCEEEEEECCCCCCCTTC----CCCCH----HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcC--CcEEEEEEecCccccccc----CCCCc----hhhHHHHHHHHHHHHH
Confidence 4679999999999999999999999999988 899999999743221111 01111 2223334555566666
Q ss_pred HHHHHHhc-----CCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 83 AEAVYRNF-----QNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 83 ~~~~~~~~-----~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+.+.+.+. + +.+++.+..|++.+.|+++++ ++|+||||+++++++.++++||++++|+++++||||++|..
T Consensus 87 ~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 162 (309)
T 3cis_A 87 ALKVVEQASLRAGP--PTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDE 162 (309)
T ss_dssp HHHHHHHHCSSSCC--SCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTT
T ss_pred HHHHHHHhcccCCC--ceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCC
Confidence 66666655 5 889999999999999999997 99999999999999999999999999999999999999876
Q ss_pred C
Q 031383 158 E 158 (160)
Q Consensus 158 ~ 158 (160)
.
T Consensus 163 ~ 163 (309)
T 3cis_A 163 D 163 (309)
T ss_dssp C
T ss_pred c
Confidence 4
No 17
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.92 E-value=3.2e-24 Score=153.94 Aligned_cols=137 Identities=16% Similarity=0.202 Sum_probs=105.0
Q ss_pred CceEEEEEecCChH-------HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEE-------SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESV 76 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~-------s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (160)
++++||||+|+|+. +..++++|..+|+..+ ++|+++||++....... .+.. ...+...+.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~--------~~~~--~~~~~~~~~- 199 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAK--ATLHVISAHPSPMLSSA--------DPTF--QLSETIEAR- 199 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTT--CEEEEEEEEC-----------------CH--HHHHHHHHH-
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcC--CeEEEEEEecCcccccc--------Cchh--HHHHHHHHH-
Confidence 57999999999998 8999999999999988 89999999986543211 0110 111222222
Q ss_pred HHHHHHHHHHHHhcCCcce-EEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 77 NSVMNRAEAVYRNFQNNIH-VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..+.+...+++.+ +. +...+..|++.+.|+++++++++||||||+++++++.++++||++++++++++||||+||
T Consensus 200 --~~~~l~~~~~~~g--~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~ 275 (290)
T 3mt0_A 200 --YREACRTFQAEYG--FSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLK 275 (290)
T ss_dssp --HHHHHHHHHHHHT--CCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEEC
T ss_pred --HHHHHHHHHHHcC--CCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEEC
Confidence 2333333445556 53 566778899999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 031383 156 HP 157 (160)
Q Consensus 156 ~~ 157 (160)
+.
T Consensus 276 ~~ 277 (290)
T 3mt0_A 276 PD 277 (290)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 18
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.91 E-value=2.7e-24 Score=152.63 Aligned_cols=146 Identities=19% Similarity=0.179 Sum_probs=113.7
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCc-CCCCCCcccchh---HHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHS-SFDAAGYIFSND---VIKAVEKYASESVNSVMN 81 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 81 (160)
++||||+|+|+.+..|+++|+.+|+..+ ++|+++|+++...... ....... ...+ ..+...+...+..++.++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLS--APLTVLFVVDTRLARIPELLDFGA-LTVPVPVLRTELERALALRGEAVLE 77 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHT--CCEEEEEEEEHHHHTHHHHC--------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCcccccccCchH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999988 8999999986532110 0000000 0001 111113344566677788
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCc-ccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG-FIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~-~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
.+...+...| +++++.+..|++.+.|+++ +.++|+||||+++++ ++.++++||++++++++++|||++||+..
T Consensus 78 ~~~~~~~~~g--~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~ 151 (268)
T 3ab8_A 78 RVRQSALAAG--VAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEP 151 (268)
T ss_dssp HHHHHHHHTT--CCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSC
T ss_pred HHHHHHHhCC--CCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCC
Confidence 8888888888 8899888999999999999 779999999999998 99999999999999999999999999754
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.91 E-value=2.8e-24 Score=154.26 Aligned_cols=126 Identities=14% Similarity=0.109 Sum_probs=107.6
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
|..++++|||++|+|+.+..|+++|+.+|+..+ ++|+++|+.++ +..++.+
T Consensus 3 ~M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~---------------------------~~~~~~l 53 (290)
T 3mt0_A 3 AMQAIRSILVVIEPDQLEGLALKRAQLIAGVTQ--SHLHLLVCEKR---------------------------RDHSAAL 53 (290)
T ss_dssp TTTTCCEEEEECCSSCSCCHHHHHHHHHHHHHC--CEEEEEEECSS---------------------------SCCHHHH
T ss_pred hhhhhceEEEEeCCCccchHHHHHHHHHHHhcC--CeEEEEEeeCc---------------------------HHHHHHH
Confidence 456789999999999999999999999999998 89999999873 1112233
Q ss_pred HHHHHHHHhcCCcceEEEEEe-cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+.+.+.+...+ +.+++.+. .|++.+.|++++++.++|+||||+++++.+.++++||++++++++++||||++|+.
T Consensus 54 ~~~~~~~~~~~--~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 54 NDLAQELREEG--YSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp HHHHHHHHHTT--CCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHHhhCC--CeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCC
Confidence 34444445667 88998887 46899999999999999999999999999999999999999999999999999954
No 20
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.91 E-value=1.7e-23 Score=150.45 Aligned_cols=127 Identities=24% Similarity=0.284 Sum_probs=111.6
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
..+++|||++|+++.+..++++|..+++..+ ++|+++|+.+... .++.++.
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~--~~l~ll~v~~~~~---------------------------~~~~l~~ 218 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTG--GELHIIHVSEDGD---------------------------KTADLRV 218 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEECSSSC---------------------------CHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcC--CEEEEEEEccCch---------------------------HHHHHHH
Confidence 4579999999999999999999999999888 8999999997652 1234445
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCCCC
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPEEN 160 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~~ 160 (160)
+.+.+++.+ +.++..+..|++.+.|++++++.++||||||+++++++.++++||++++++++++||||++|+..++
T Consensus 219 ~~~~l~~~~--~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~~~ 294 (294)
T 3loq_A 219 MEEVIGAEG--IEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGDDE 294 (294)
T ss_dssp HHHHHHHTT--CCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCTTC
T ss_pred HHHHHHHcC--CcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCCCC
Confidence 555666677 7888888999999999999999999999999999999999999999999999999999999987653
No 21
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.90 E-value=1.9e-23 Score=134.42 Aligned_cols=133 Identities=11% Similarity=0.005 Sum_probs=97.2
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe-CC-C-CCCcCCCCCCcccchhHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK-PP-L-PVHSSFDAAGYIFSNDVIKAVEKYASESVNSV 79 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (160)
.++++||||+|+|+.+..|+++|..+|+..+ ++|+++|+. +. + ........ .... ....+...+..++.
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~ 73 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLG--AELDILAVLEDVYNLERANVTFG----LPFP--PEIKEESKKRIERR 73 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTC--CEEEEEEECHHHHHHHHHHHHHC----CCCC--THHHHHHHHHHHHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcC--CeEEEEEEecccccccccccccC----CCCC--hHHHHHHHHHHHHH
Confidence 4689999999999999999999999999988 899999998 53 1 00000000 0000 11223333444455
Q ss_pred HHHHHHHH-HhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 80 MNRAEAVY-RNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
++.+ ..+ .... + .+++.+..|++.+.|+++++++++|+||||++++ |++++++++++||||+||
T Consensus 74 l~~~-~~~~~~~~-~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 74 LREV-WEKLTGST-E-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHHH-HHHHHSCC-C-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEEEECC
T ss_pred HHHH-HHHhhccC-C-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCceEeeC
Confidence 5555 443 1122 3 5666788899999999999999999999998876 899999999999999986
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.89 E-value=2.2e-22 Score=145.57 Aligned_cols=138 Identities=24% Similarity=0.305 Sum_probs=105.4
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.+++|||++|+++.+..++++|+.+|...+ ++|+++|++++.... .. ......... +..++.++.+
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~-~~-------~~~~~~~~~----~~~~~~l~~~ 235 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRN--VDLVALHAWSDVDVS-EW-------PGIDWPATQ----SMAEQVLAER 235 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTT--CCEEEEEESCSSCCT-TC-------SSCCHHHHH----HHHHHHHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcC--CEEEEEEEeeccccc-CC-------CcccHHHHH----HHHHHHHHHH
Confidence 478999999999999999999999999888 799999998754321 00 011111122 2222333333
Q ss_pred HHHHHh-cCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 84 EAVYRN-FQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
...+.+ +. ++.++..+..|++.+.|+++++ ++|+||||+++++++.++++||++++|+++++||||++|+..
T Consensus 236 ~~~~~~~~~-~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~~ 308 (309)
T 3cis_A 236 LAGWQERYP-NVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARESL 308 (309)
T ss_dssp HTTHHHHCT-TSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC--
T ss_pred HHHHHhhCC-CCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCCC
Confidence 333322 21 3788888899999999999998 999999999999999999999999999999999999999753
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.89 E-value=2.2e-23 Score=151.19 Aligned_cols=143 Identities=20% Similarity=0.258 Sum_probs=109.6
Q ss_pred CceEEEEEecCCh-------HHHHHHHHHHHhcCCC--CCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESE-------ESMHALSWCLNNLFSP--DTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASE 74 (160)
Q Consensus 4 ~~~~Ilv~~d~s~-------~s~~al~~a~~~a~~~--~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (160)
.+++|||++|+|+ .+..++++|..+|... + ++|+++|+++......... .+........+..
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~--a~l~ll~v~~~~~~~~~~~-----~~~~~~~~~~~~~-- 225 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKD--PDVHLLSAYPVAPINIAIE-----LPDFDPNLYNNAL-- 225 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSS--CCEEEEEEECCCSCSCCTT-----CTTCCHHHHHHHH--
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCC--CeEEEEEeecCcchhhhcc-----CCcccHHHHHHHH--
Confidence 5799999999998 6799999999999998 7 8999999998765421110 0111112222222
Q ss_pred HHHHHHHHHHHHHHhcCCcc-eEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 75 SVNSVMNRAEAVYRNFQNNI-HVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
.++..+.+...+++.+ + .++..+..|++.+.|+++++++++||||||+++++++.++++||++++|+++++||||+
T Consensus 226 -~~~~~~~l~~~~~~~~--~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLv 302 (319)
T 3olq_A 226 -RGQHLIAMKELRQKFS--IPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLA 302 (319)
T ss_dssp -HHHHHHHHHHHHHHTT--CCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEE
T ss_pred -HHHHHHHHHHHHHHhC--CCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEE
Confidence 2333333444455666 3 34566778999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 031383 154 VKHPE 158 (160)
Q Consensus 154 v~~~~ 158 (160)
||+..
T Consensus 303 v~~~~ 307 (319)
T 3olq_A 303 IKPDG 307 (319)
T ss_dssp ECCTT
T ss_pred ECCCC
Confidence 98764
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.86 E-value=4.8e-21 Score=135.81 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=99.5
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.+++||||+|+|+.+..++++|..++...+ ++++++|+.++. +..++.++.+
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~--a~l~ll~v~~~~--------------------------~~~~~~l~~~ 204 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALG--LGVRVVSVHEDP--------------------------ARAEAWALEA 204 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHT--CCEEEEEECSSH--------------------------HHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCC--CEEEEEEEcCcH--------------------------HHHHHHHHHH
Confidence 468999999999999999999999999888 799999998642 1123344555
Q ss_pred HHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
...+.+.+ +++++.+..|++.+.|+++++++ |+||||+ ++.++++||++++++++++||||++|
T Consensus 205 ~~~l~~~~--~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 205 EAYLRDHG--VEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHHHHTT--CCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHcC--CceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 66666677 88888888899999999999987 9999998 78889999999999999999999996
No 25
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=96.93 E-value=0.014 Score=44.27 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=67.8
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
.+.++|+|+++|..+|..++..+.++....+ .++.++|+-..... ....+-.+.
T Consensus 16 ~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~--~~v~avhvdhglrg------------------------~~s~~~~~~ 69 (464)
T 3a2k_A 16 SEGAAVIVGVSGGPDSLALLHVFLSLRDEWK--LQVIAAHVDHMFRG------------------------RESEEEMEF 69 (464)
T ss_dssp SCSSBEEEECCSSHHHHHHHHHHHHHHHTTT--CBCEEEEEECTTCT------------------------HHHHHHHHH
T ss_pred CCCCEEEEEEcCcHHHHHHHHHHHHHHHHcC--CeEEEEEEECCCCc------------------------cccHHHHHH
Confidence 4567899999999999999998888876666 68999999754321 111223445
Q ss_pred HHHHHHhcCCcceEEEEEec--------C-C--------hhhHHHHHhhhhCCCEEEEeecCC
Q 031383 83 AEAVYRNFQNNIHVKRVVGC--------G-D--------AKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~--------g-~--------~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
+...+++.| +++...... + + ....+.+++++++++.|++|++..
T Consensus 70 v~~~~~~lg--i~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 70 VKRFCVERR--ILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp HHHHHHHTT--CEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred HHHHHHHcC--CcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 666677778 776654332 1 1 124556778889999999997643
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=96.74 E-value=0.029 Score=40.34 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=64.5
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCe-EEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNT-LVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~-l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
.+.++|+|+++|..+|..++..+.++....+ .+ +.++|+-..... ...+-.+
T Consensus 22 ~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g--~~~v~av~vd~g~r~-------------------------~s~~~~~ 74 (317)
T 1wy5_A 22 SGERRVLIAFSGGVDSVVLTDVLLKLKNYFS--LKEVALAHFNHMLRE-------------------------SAERDEE 74 (317)
T ss_dssp SSCCEEEEECCSSHHHHHHHHHHHHSTTTTT--CSEEEEEEEECCSST-------------------------HHHHHHH
T ss_pred CCCCEEEEEecchHHHHHHHHHHHHHHHHcC--CCEEEEEEEECCCCc-------------------------ccHHHHH
Confidence 4567999999999999999988888766556 47 999999754311 1112234
Q ss_pred HHHHHHHhcCCcceEEEEEec--------C-C--------hhhHHHHHhhhhCCCEEEEeecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGC--------G-D--------AKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--------g-~--------~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
.++..+++.| +++...... | + ....+.+.+++.+++.|++|++..
T Consensus 75 ~v~~~a~~lg--i~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~d 136 (317)
T 1wy5_A 75 FCKEFAKERN--MKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLN 136 (317)
T ss_dssp HHHHHHHHHT--CCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHH
T ss_pred HHHHHHHHcC--CcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchh
Confidence 4555566677 666554321 1 1 112456678889999999997643
No 27
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=96.38 E-value=0.041 Score=36.04 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHh---hhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTV---EKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a---~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.++++.+.++++| ++++..+..- +..+.+.+|+ ++.+++++|.|..+...+.+. +...++.||+-|
T Consensus 37 v~~~a~~~L~~~g--I~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGv--------vAa~T~~PVIGV 106 (181)
T 4b4k_A 37 TMKYACDILDELN--IPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM--------VAAKTNLPVIGV 106 (181)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH--------HHTTCCSCEEEE
T ss_pred HHHHHHHHHHHcC--CCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhh--------HHhcCCCCEEEE
Confidence 4556667778889 9999988886 5555555554 557889999998777765543 556788999999
Q ss_pred cCCC
Q 031383 155 KHPE 158 (160)
Q Consensus 155 ~~~~ 158 (160)
|...
T Consensus 107 Pv~s 110 (181)
T 4b4k_A 107 PVQS 110 (181)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 9754
No 28
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=95.93 E-value=0.06 Score=35.05 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHH---hhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~---a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| ++++..+..- +..+.+.++ +++.+++.+|.+....+.+.+. +...+++||+-|
T Consensus 27 v~~~a~~~l~~~g--i~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgv--------vA~~t~~PVIgV 96 (173)
T 4grd_A 27 VMKHAVAILQEFG--VPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGM--------LAAKTTVPVLGV 96 (173)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHH--------HHHHCCSCEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhh--------heecCCCCEEEE
Confidence 4455666777888 9999888876 555555555 4557889999988777665443 556778999999
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
|-.
T Consensus 97 Pv~ 99 (173)
T 4grd_A 97 PVA 99 (173)
T ss_dssp EEC
T ss_pred EcC
Confidence 854
No 29
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=95.75 E-value=0.12 Score=33.47 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhh---hhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| +.++..+..- +..+.+.++++ +.+++.+|.+....+.+.. -+...+++||+-|
T Consensus 20 v~~~a~~~l~~~g--i~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgV 89 (166)
T 3oow_A 20 TMKECCDILDNLG--IGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPG--------MVAAKTTLPVLGV 89 (166)
T ss_dssp HHHHHHHHHHHTT--CEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--------HHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHH--------HHHhccCCCEEEe
Confidence 4556667777888 8999888876 55666666654 4578999998777666543 3666788999999
Q ss_pred cCCC
Q 031383 155 KHPE 158 (160)
Q Consensus 155 ~~~~ 158 (160)
|...
T Consensus 90 P~~~ 93 (166)
T 3oow_A 90 PVKS 93 (166)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 8643
No 30
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=95.65 E-value=0.097 Score=33.58 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
..+++...++.+| ++++..+..- +..+.+.+++++...+.+|.+....+.+.+ -+...+++||+-||.
T Consensus 14 v~~~a~~~l~~~g--i~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpg--------vva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 14 IAEKAVNILKEFG--VEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPG--------VVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHH--------HHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHcC--CCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHH--------HHHhccCCCEEEecC
Confidence 4556667777888 8999888876 777888888886656889888777666543 356677899999986
No 31
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=95.61 E-value=0.1 Score=34.03 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHh---hhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTV---EKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a---~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| ++++..+..- +..+.+.+++ ++.+++++|.+....+.+.. -+...+++||+-|
T Consensus 27 v~~~a~~~L~~~G--i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgV 96 (174)
T 3kuu_A 27 TMQFAADVLTTLN--VPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPG--------MLAAKTLVPVLGV 96 (174)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHH--------HHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH--------HHHhccCCCEEEe
Confidence 4556667777888 9999888876 5666666665 45689999988777666543 3566778999999
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
|..
T Consensus 97 P~~ 99 (174)
T 3kuu_A 97 PVQ 99 (174)
T ss_dssp EEC
T ss_pred eCC
Confidence 864
No 32
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=95.57 E-value=0.1 Score=33.92 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHH---hhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~---a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| ++++..+..- +..+.+.++ +++.+++.+|.+....+.+.. -+...+++||+-|
T Consensus 21 v~~~a~~~l~~~g--i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgV 90 (169)
T 3trh_A 21 TMETAFTELKSLG--IPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAG--------TIAAHTLKPVIGV 90 (169)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHH--------HHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH--------HHHhcCCCCEEEe
Confidence 4556667777888 9999888775 555556655 445789988888776666543 3666788999999
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
|..
T Consensus 91 P~~ 93 (169)
T 3trh_A 91 PMA 93 (169)
T ss_dssp ECC
T ss_pred ecC
Confidence 865
No 33
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=95.50 E-value=0.12 Score=33.51 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhh---hhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| ++++..+..- +..+.+.++++ +.+++++|.+....+.+.. -+...+++||+-|
T Consensus 26 v~~~a~~~L~~~G--i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgV 95 (170)
T 1xmp_A 26 TMKYACDILDELN--IPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG--------MVAAKTNLPVIGV 95 (170)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHTTCCSCEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH--------HHHhccCCCEEEe
Confidence 4556666777888 8999888875 66666666665 4568998888777666544 3566778999999
Q ss_pred cCCC
Q 031383 155 KHPE 158 (160)
Q Consensus 155 ~~~~ 158 (160)
|...
T Consensus 96 P~~~ 99 (170)
T 1xmp_A 96 PVQS 99 (170)
T ss_dssp EECC
T ss_pred eCCC
Confidence 8653
No 34
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=95.44 E-value=0.24 Score=30.90 Aligned_cols=130 Identities=17% Similarity=0.053 Sum_probs=87.3
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
|.+|||.+.-.-.+..+......+...... +.+.+|-=.++... +. . ...+..+..++.++...
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~-~~f~VLVPa~~~~a-~~--------~------e~~~a~~~A~~~l~~sl 64 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPE-ARFVLLVPAVPPPG-WV--------Y------EENEVRRRAEEEAAAAK 64 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTT-CEEEEEEEEECCCC-SC--------C--------CHHHHHHHHHHHHHH
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCc-eEEEEEecCCCCcc-cc--------c------ChHHHHHHHHHHHHHHH
Confidence 478999988876666666664555444321 34433321122100 00 0 11234455666666777
Q ss_pred HHHHhcCCcceEE-EEEecCChhhHHHHHhhhhC--CCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 85 AVYRNFQNNIHVK-RVVGCGDAKDVICGTVEKLE--ADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 85 ~~~~~~~~~~~~~-~~~~~g~~~~~i~~~a~~~~--~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..++..| +... -.+..+++..+|.....+.+ +|-||+-+... .++.+|.-..+.+.=+ ...||+=+
T Consensus 65 ~aL~~~G--~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs~~fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 65 RALEAQG--IPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPP-GLSRWLRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp HHHHTTT--CCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCT-TTCHHHHTTHHHHGGG-GSSCEEEE
T ss_pred HHHHHcC--CcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCc-hHHHHHhccHHHHHHh-cCCCEEEE
Confidence 7778888 8887 88888999999999999999 99999987754 4777888888888888 89999855
No 35
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=95.34 E-value=0.12 Score=33.66 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHH---hhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~---a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| ++++..+..- +..+.+.++ +++.+++.+|.+....+.+.. -+...+++||+-|
T Consensus 22 v~~~a~~~L~~~g--i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgV 91 (174)
T 3lp6_A 22 VMADAAAALAEFD--IPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPG--------MVAAATPLPVIGV 91 (174)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHH--------HHHhccCCCEEEe
Confidence 4556667777888 8898888775 455555555 556789999998777666543 3566788999999
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
|..
T Consensus 92 P~~ 94 (174)
T 3lp6_A 92 PVP 94 (174)
T ss_dssp EEC
T ss_pred eCC
Confidence 864
No 36
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=95.33 E-value=0.13 Score=33.81 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhh---hhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| ++++..+..- +..+.+.++++ +.+++++|.+....+.+.. -+...+++||+-|
T Consensus 28 v~~~a~~~L~~~G--i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgV 97 (183)
T 1o4v_A 28 VMKQAAEILEEFG--IDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPG--------MVASITHLPVIGV 97 (183)
T ss_dssp HHHHHHHHHHHTT--CEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHcC--CCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHH--------HHHhccCCCEEEe
Confidence 4556667777888 9999888875 55555566544 5678998888777666543 3566688999999
Q ss_pred cCCC
Q 031383 155 KHPE 158 (160)
Q Consensus 155 ~~~~ 158 (160)
|...
T Consensus 98 P~~~ 101 (183)
T 1o4v_A 98 PVKT 101 (183)
T ss_dssp EECC
T ss_pred eCCC
Confidence 8643
No 37
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=95.31 E-value=0.14 Score=33.11 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHh---hhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTV---EKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a---~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| ++++..+..- +..+.+.+++ ++.+++++|.+....+.+.. -+...+++||+-|
T Consensus 18 v~~~a~~~l~~~g--i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgV 87 (163)
T 3ors_A 18 IMQESCNMLDYFE--IPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPG--------MVASLTTLPVIGV 87 (163)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH--------HHHhccCCCEEEe
Confidence 4556667778889 8999888775 5666666654 45678999988777666543 3566788999999
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
|..
T Consensus 88 P~~ 90 (163)
T 3ors_A 88 PIE 90 (163)
T ss_dssp EEC
T ss_pred eCC
Confidence 854
No 38
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=95.14 E-value=0.15 Score=32.76 Aligned_cols=69 Identities=10% Similarity=0.201 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhh---h-CCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEK---L-EADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~---~-~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..+++...++++| ++++..+..- +..+.+.+++++ . +++.+|.+....+.+.. -+...+++||+-
T Consensus 17 v~~~a~~~l~~~g--i~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIg 86 (159)
T 3rg8_A 17 HAEKIASELKTFG--IEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSG--------FVDGFVKGATIA 86 (159)
T ss_dssp HHHHHHHHHHHTT--CEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHH--------HHHHHSSSCEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHH--------HHHhccCCCEEE
Confidence 4556667777888 9999888776 666677666543 2 58999998777666543 356678899999
Q ss_pred ecCC
Q 031383 154 VKHP 157 (160)
Q Consensus 154 v~~~ 157 (160)
||..
T Consensus 87 VP~~ 90 (159)
T 3rg8_A 87 CPPP 90 (159)
T ss_dssp CCCC
T ss_pred eeCC
Confidence 9864
No 39
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=95.03 E-value=0.18 Score=33.17 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhh---hhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++...++++| ++++..+..- +..+.+.++++ +.+++++|.+....+.+.. -+...+++||+-|
T Consensus 36 v~~~a~~~L~~~G--i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgV 105 (182)
T 1u11_A 36 TMRHADALLTELE--IPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPG--------MCAAWTRLPVLGV 105 (182)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHcC--CCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHH--------HHHhccCCCEEEe
Confidence 4556666777888 8999888875 66666666665 4568998888777666543 3566778999999
Q ss_pred cCCC
Q 031383 155 KHPE 158 (160)
Q Consensus 155 ~~~~ 158 (160)
|...
T Consensus 106 P~~~ 109 (182)
T 1u11_A 106 PVES 109 (182)
T ss_dssp EECC
T ss_pred eCCC
Confidence 8643
No 40
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=94.61 E-value=0.31 Score=37.48 Aligned_cols=89 Identities=18% Similarity=0.113 Sum_probs=61.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
|.--....||.+|++.|...+ ..|..|+++++.......+ .....-.-+.+..+...+++.|
T Consensus 47 DLRl~DN~AL~~A~~~a~~~~--~pVl~vfildp~~~~~~~~---------------~~r~~FL~~sL~dL~~~L~~lG- 108 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAASA--SPLAVAFALFPRPFLLSAR---------------RRQLGFLLRGLRRLAADAAARH- 108 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHHT--CCEEEEEECCCTTCGGGCC---------------HHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CcchhhcHHHHHHHHhhhhcC--CCEEEEEeccchhhccCCC---------------HHHHHHHHHHHHHHHHHHHHcC-
Confidence 444456678999998876556 5899999998763211100 1222445556666667777777
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEE
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVM 123 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvi 123 (160)
+...+..|++.+. .+.+++.+++.|+.
T Consensus 109 ---~~L~v~~G~p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 109 ---LPFFLFTGGPAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp ---CCEEEESSCTTHH-HHHHHHTTCSEEEE
T ss_pred ---CceEEEecChHHH-HHHHHhcCCCEEEe
Confidence 4456678999999 99999999999997
No 41
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=94.30 E-value=0.42 Score=35.91 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=34.7
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCC-CCCCCeEEEEEEeCCC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFS-PDTNNTLVLLYVKPPL 47 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~-~~~~a~l~~l~v~~~~ 47 (160)
+.++|+|+++|..+|..++..+.++... .+ .++.++|+-...
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g--~~v~avhvdhgl 54 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPG--VALRAIHVHHGL 54 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTT--CEEEEEEECCSC
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCC--CeEEEEEEECCC
Confidence 4578999999999999999888887765 55 699999997543
No 42
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=93.78 E-value=0.53 Score=35.88 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=73.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
|.--....||..|++.+...+ ..|..|+++++.... . ......-.-+.+..+.+.+++.|
T Consensus 46 DLRl~DN~aL~~A~~~a~~~~--~~v~~vfi~dp~~~~--~---------------~~~r~~Fl~~sL~~L~~~L~~~G- 105 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEAN--VPVVVVFCLTDEFLE--A---------------GIRQYEFMLKGLQELEVSLSRKK- 105 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHHT--SCEEEEEEECTTGGG--S---------------CHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCccccHHHHHHHHHHHHcC--CcEEEEEEeChhhhc--c---------------CHHHHHHHHHHHHHHHHHHHHcC-
Confidence 333345568888888765555 489999999875321 0 11222344455666666777777
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+. ..+..|++.+.|.+.+++.+++.|+........ .. ...+.+.+...|++..+..
T Consensus 106 -~~--L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~-~~----~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 106 -IP--SFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRI-KN----QWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp -CC--EEEEESCHHHHHHHHHHHTTCSEEEEECCCSHH-HH----HHHHHHHHHCCSCEEEECC
T ss_pred -Cc--EEEEeCCHHHHHHHHHHHcCCCEEEEecccchh-HH----HHHHHHHHHcCCEEEEEeC
Confidence 43 445679999999999999999999986433221 11 1223444445888877754
No 43
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=93.72 E-value=0.53 Score=36.50 Aligned_cols=129 Identities=10% Similarity=-0.018 Sum_probs=78.9
Q ss_pred eEEEEEe--cCChHHHHHHHHHHHhcCC--CCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAV--DESEESMHALSWCLNNLFS--PDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (160)
Q Consensus 6 ~~Ilv~~--d~s~~s~~al~~a~~~a~~--~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
..+|+=+ |.--....||..|++.+.. .+ ..|..|+++++........ ......-.-+.+.
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~--~pv~~vfi~dp~~~~~~~~--------------~~~r~~Fl~~sL~ 92 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGR--YFVRPIFILDPGILDWMQV--------------GANRWRFLQQTLE 92 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTT--EEEEEEEEECTTGGGCTTS--------------CHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccCC--CeEEEEEEECchhhcccCC--------------CHHHHHHHHHHHH
Confidence 3445555 4445566788888887643 34 5799999998754310000 0112234445566
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+.+.+++.| + ...+..|++.+.|.+.+++.+++.|+.-..- ...+ .....-....+....+++..+..
T Consensus 93 ~L~~~L~~~G--~--~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~p~~-~~rd~~v~~~~~~~gi~~~~~~~ 161 (543)
T 2wq7_A 93 DLDNQLRKLN--S--RLFVVRGKPAEVFPRIFKSWRVEMLTFETDI-EPYS-VTRDAAVQKLAKAEGVRVETHCS 161 (543)
T ss_dssp HHHHHHHHTT--C--CCEEEESCHHHHHHHHHHHTTEEEEEEECCC-SHHH-HHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHCC--C--eEEEEeCCHHHHHHHHHHHcCCCEEEEecCc-CHHH-HHHHHHHHHHHHHcCCEEEEecC
Confidence 6666677777 3 3444669999999999999999999886432 2221 11223445566666788777654
No 44
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=93.25 E-value=0.71 Score=33.33 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=32.7
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
+.+|+|+++|..+|..++..+.+.....+ .++.++|+-...
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~--~~i~vv~vDtg~ 86 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGK--LPFPVMHVDTRW 86 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSC--CSSCEEEECCSC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccC--CCEEEEEEECCC
Confidence 46899999999999999998888866544 478889986554
No 45
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=92.44 E-value=0.62 Score=33.03 Aligned_cols=103 Identities=7% Similarity=0.023 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceE
Q 031383 17 ESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHV 96 (160)
Q Consensus 17 ~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (160)
+..-++-.|-.+....+ ++|.+.-|++.. ...+.+++.++.+.+.++ +..
T Consensus 177 Ng~LmlllAylL~~nW~--A~I~L~~vV~de-----------------------~a~~~a~~~l~~Lv~~~R-----i~a 226 (294)
T 3g40_A 177 NMDLALLIAYKLKSNWK--ASLSFMTFAPTA-----------------------IQAQAAENFLQSLAELAR-----IPN 226 (294)
T ss_dssp TTHHHHHHHHHHHHHHT--CEEEEEEECSSH-----------------------HHHHHHHHHHHHHHHHHT-----CCS
T ss_pred chhHHHHHHHHHhhCcC--CeEEEEEecCCH-----------------------HHHHHHHHHHHHHHHHhc-----CCc
Confidence 34445555555555565 899999998633 334555555555555544 222
Q ss_pred EEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 97 KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 97 ~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
++.+.. ..-.+|+..+. .+|++++|-.....++ ..++++..+....+.+.+..
T Consensus 227 ~~~vv~-~~F~~il~~s~--~ADL~flGl~~~~df~------~~~~~~~~~~ssc~f~~dsg 279 (294)
T 3g40_A 227 VKMQVL-RENPIKSSKLP--FASLHIFSLDPNPDLD------LARHLMEKAGSSCIFALDSG 279 (294)
T ss_dssp CEEEEE-SSCTTTSSSCC--CCSEEEEECCSSCCHH------HHHHHHHHHTSEEEEEECCS
T ss_pred eEEEec-CchHHHHhhCc--CCCEEEEcCCCCCcHH------HHHHHHHhcCCeEEEEecCc
Confidence 222223 44445555554 7999999987666554 45788888887777776543
No 46
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=92.27 E-value=2.6 Score=32.15 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=74.1
Q ss_pred eEEEEEe--cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAV--DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 6 ~~Ilv~~--d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+.+|+=+ |.--....||..|++. + ..+..|+++++........ +..... .....-.-+.+..+
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~~----~--~~v~~vfi~dp~~~~~~~~--~~~~~~-------~~r~~Fl~~sL~~L 70 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALKS----G--LAITAVYCYDPRQFAQTHQ--GFAKTG-------PWRSNFLQQSVQNL 70 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----T--SEEEEEEEECGGGGSBCTT--SCBSSC-------HHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCcchHHHHHHHHhc----C--CCEEEEEEECchhhccccc--ccCCCC-------HHHHHHHHHHHHHH
Confidence 4455555 4445566788888753 3 3788999998753211000 000000 11223444556666
Q ss_pred HHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+.+++.| + ...+..|++.+.|.+.+++.+++.|+.-..-. ..... ...-+.+.+....+++..+..
T Consensus 71 ~~~L~~~G--~--~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-~~~~~-rd~~v~~~l~~~gi~~~~~~~ 137 (489)
T 1np7_A 71 AESLQKVG--N--KLLVTTGLPEQVIPQIAKQINAKTIYYHREVT-QEELD-VERNLVKQLTILGIEAKGYWG 137 (489)
T ss_dssp HHHHHHTT--C--CEEEEESCHHHHHHHHHHHTTEEEEEEECCCS-HHHHH-HHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHCC--C--cEEEEECCHHHHHHHHHHHcCCCEEEEecccC-HHHHH-HHHHHHHHHHhcCCeEEEecC
Confidence 66677777 4 34456799999999999999999998864322 22111 122334445555677766643
No 47
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=91.93 E-value=2.3 Score=31.35 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=29.8
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
.+.++|+|+++|.-+|..++..+.+. + -++..+|+...
T Consensus 7 ~~~~kVlVa~SGGvDSsv~a~lL~~~----G--~~V~~v~~~~~ 44 (376)
T 2hma_A 7 NSKTRVVVGMSGGVDSSVTALLLKEQ----G--YDVIGIFMKNW 44 (376)
T ss_dssp GGGSEEEEECCSSHHHHHHHHHHHHT----T--CEEEEEEEECC
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHc----C--CcEEEEEEECC
Confidence 34579999999999998888777654 5 58899988644
No 48
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=91.71 E-value=0.58 Score=27.52 Aligned_cols=55 Identities=9% Similarity=-0.005 Sum_probs=38.0
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec----CCcccceeeccchhHHHhhcCCCCEEEecCCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH----GYGFIKRALLGSVSDYCAKHVKCPVVIVKHPEE 159 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~----~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~~ 159 (160)
...+.|.+++++++++.||+|-. +..+......-..++.|-.. +.||..+.+..+
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DERlT 96 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCCCC
Confidence 46778999999999999999932 22222222233456777777 899999877643
No 49
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=91.65 E-value=2.8 Score=30.96 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=59.3
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
|..+.++|+|++++.-+|..++..+.+. + -+|..+|+....... .... -...+-.
T Consensus 13 ~~~~~~kVvVa~SGGvDSsv~a~lL~~~----G--~~V~~v~~~~~~~~~----------~~~~---------~~s~~d~ 67 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQQQ----G--YQVEGLFMKNWEEDD----------GEEY---------CTAAADL 67 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHHTT----C--CEEEEEEEECCCCCS----------HHHH---------HHHHHHH
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHHHc----C--CeEEEEEEEcCcccc----------ccCC---------CCCHHHH
Confidence 5566789999999998888777776553 5 589999886432110 0000 0011224
Q ss_pred HHHHHHHHhcCCcceEEEEEec-----------------C---C---------hhhHHHHHhhh-hCCCEEEEeecCC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGC-----------------G---D---------AKDVICGTVEK-LEADTLVMGSHGY 128 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-----------------g---~---------~~~~i~~~a~~-~~~dllvig~~~~ 128 (160)
+.++..+++.| +++...-.. | + -...+.++|.+ .++|.|+.|.+..
T Consensus 68 ~~a~~va~~LG--Ip~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~ 143 (380)
T 2der_A 68 ADAQAVCDKLG--IELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVR 143 (380)
T ss_dssp HHHHHHHHHHT--CCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCE
T ss_pred HHHHHHHHHcC--CcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccc
Confidence 45555666667 665544321 1 0 12456678888 9999999997543
No 50
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=91.51 E-value=2.7 Score=29.81 Aligned_cols=122 Identities=8% Similarity=0.084 Sum_probs=76.7
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
.+|||++.........+++|-.+....+ -++++++.+..... . ..++ +..+++
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~p~~~~~--------------------~---l~~q-l~~l~~ 73 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLAGNTDKE--------------------N---LLSQ-LPSISE 73 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC---CTT--------------------C---HHHH-HHHHHH
T ss_pred CcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEccCCCcc--------------------H---HHHH-HHHHHH
Confidence 4799999777788889999999998877 89999997554321 0 0111 255677
Q ss_pred HHHhcCCcceEEEEEecC-ChhhHHHHHhhhh-----CCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 86 VYRNFQNNIHVKRVVGCG-DAKDVICGTVEKL-----EADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~-----~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
.+++.+ +.....+... ++...+...++.+ .++.|++|......-.. -+..++.++ .+...-|++++..+
T Consensus 74 ~l~~r~--v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~-~y~~~i~~~-~~~~~nVlil~~~~ 148 (294)
T 3g40_A 74 GFQEEG--VFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDE-EIREIIRKA-SMYRMGVLLFSKHP 148 (294)
T ss_dssp HHHHTT--CEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHH-HHHHHHHHH-HHTTCEEEEEECCT
T ss_pred HHHhCC--ceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhH-HHHHHHHHH-HHhCceEEEEecCC
Confidence 888888 7776665554 7888888777664 57899999664433222 123333332 34478888886543
No 51
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=91.13 E-value=3.7 Score=30.68 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=30.4
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
.++|+++++|.-+|..++.++.+. + .++..+|+....
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G--~eV~av~vd~g~ 41 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----G--YDVIAYLANIGQ 41 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----T--EEEEEEEEESSC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----C--CEEEEEEEECCc
Confidence 478999999999999888888764 5 589999987543
No 52
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=91.06 E-value=1 Score=30.48 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=56.8
Q ss_pred CceEEEEEecC-----ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDE-----SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNS 78 (160)
Q Consensus 4 ~~~~Ilv~~d~-----s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (160)
.|+.|||-.+. ++.+..++..|.+++...+ .+++++-+=+.. . +..
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g--~~v~av~~G~~~-~------------------------~~~-- 52 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANELN--CQLEAVVAGTGL-K------------------------EIE-- 52 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHT--CCEEEEEEESCC-T------------------------TTH--
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcC--CeEEEEEECCCH-H------------------------HHH--
Confidence 46789998764 4778999999999998777 588887765431 1 111
Q ss_pred HHHHHHHHHHhcCCcceEEEEEec----C----ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGC----G----DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~----g----~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
..+..+| ..--..+.. + ..+..|.+.++++++|+|++|...
T Consensus 53 ------~~~~~~G--ad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 53 ------KQILPYG--VDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp ------HHHGGGT--CSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred ------HHHHhcC--CCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1122345 433333321 1 245678888999999999999754
No 53
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=90.90 E-value=4.2 Score=30.84 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=31.9
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
.+.++|+|+++|.-+|..++.++.+. + .+|.++|+.-..
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~----G--~eViavtvd~Gq 46 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK----G--AVPYAYTANLGQ 46 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT----T--CEEEEEEEECCC
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc----C--CEEEEEEEEcCC
Confidence 35689999999999999999988764 5 699999987553
No 54
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=90.58 E-value=2.8 Score=28.34 Aligned_cols=88 Identities=9% Similarity=0.070 Sum_probs=54.3
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
|+...+||.|-++++.....++-.++.-- .+ .+|.+|-...+...
T Consensus 1 ~~~~~~riavl~SG~Gsnl~all~~~~~~--~~--~eI~~Vis~~~~a~------------------------------- 45 (215)
T 3tqr_A 1 MNREPLPIVVLISGNGTNLQAIIGAIQKG--LA--IEIRAVISNRADAY------------------------------- 45 (215)
T ss_dssp ---CCEEEEEEESSCCHHHHHHHHHHHTT--CS--EEEEEEEESCTTCH-------------------------------
T ss_pred CCCCCcEEEEEEeCCcHHHHHHHHHHHcC--CC--CEEEEEEeCCcchH-------------------------------
Confidence 77788899999999988877777776542 34 56555544332211
Q ss_pred HHHHHHHHhcCCcceEEEEEec--CC---hhhHHHHHhhhhCCCEEEEeecC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGC--GD---AKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~--g~---~~~~i~~~a~~~~~dllvig~~~ 127 (160)
..+.+++.| +++...-.. .+ ..+++++..++.++|++|+....
T Consensus 46 --~~~~A~~~g--Ip~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 46 --GLKRAQQAD--IPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp --HHHHHHHTT--CCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred --HHHHHHHcC--CCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 024455677 666543221 11 24578899999999999997554
No 55
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=89.91 E-value=1.3 Score=33.25 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHH---hhhhCC-CEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEA-DTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~---a~~~~~-dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..+++...++.+| ++++..+..- ...+.+.++ +++.++ +++|.++...+.+.+ -+...+++||+-
T Consensus 280 ~~~~a~~~l~~~g--i~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpg--------vva~~t~~PVIg 349 (425)
T 2h31_A 280 HCEKIKKACGNFG--IPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGP--------VMSGNTAYPVIS 349 (425)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHH--------HHHHHCSSCEEE
T ss_pred HHHHHHHHHHHcC--CceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHh--------HHhccCCCCEEE
Confidence 4667777788899 8888888765 455555555 445678 588888766665543 356677899999
Q ss_pred ecCC
Q 031383 154 VKHP 157 (160)
Q Consensus 154 v~~~ 157 (160)
||..
T Consensus 350 vP~~ 353 (425)
T 2h31_A 350 CPPL 353 (425)
T ss_dssp CCCC
T ss_pred eeCc
Confidence 9963
No 56
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=89.58 E-value=0.72 Score=35.74 Aligned_cols=120 Identities=8% Similarity=-0.052 Sum_probs=72.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNF-- 90 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 90 (160)
|..-....||..|++.+. .+ ..|..|+|+++........ ......-..+.+..+...+++.
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g--~~vl~vfi~dp~~~~~~~~--------------~~~r~~Fl~~sL~~L~~~L~~~~~ 75 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QG--IALIPVFIFDGESAGTKNV--------------GYNRMRFLLDSLQDIDDQLQAATD 75 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TT--CBCCEEEEECSSSSCSTTC--------------CHHHHHHHHHHHHHHHHHGGGSCS
T ss_pred CcchhhhHHHHHHHHhCC-CC--CCEEEEEecChhhhccCCC--------------CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333445567888877654 34 4899999998764321000 0122234455566666677766
Q ss_pred -CCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 91 -QNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 91 -~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
| ....++.|++.+.|.+.+++.+++.|+.... -..... -...-+...++...+++..+.
T Consensus 76 ~G----~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~-~~~~~~-~RD~~v~~~l~~~gi~~~~~~ 135 (538)
T 3tvs_A 76 GR----GRLLVFEGEPAYIFRRLHEQVRLHRICIEQD-CEPIWN-ERDESIRSLCRELNIDFVEKV 135 (538)
T ss_dssp SS----SCCEEEESCHHHHHHHHHHHHCEEEECEECC-CCGGGH-HHHHHHHHHHHHSSCCCCEEC
T ss_pred CC----CeEEEEeCCHHHHHHHHHHHcCCCEEEEccC-CCHHHH-HHHHHHHHHHHhCCceEEEec
Confidence 6 3455567999999999999999999987532 222221 112234555556666665543
No 57
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=88.21 E-value=6.5 Score=29.28 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=29.3
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
+.++++++++|.-+|..++..+.+. + .++.++|+..
T Consensus 186 ~~~kvlvalSGGvDS~vll~ll~~~----G--~~v~av~v~~ 221 (413)
T 2c5s_A 186 VGGKVMVLLSGGIDSPVAAYLTMKR----G--VSVEAVHFHS 221 (413)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHHB----T--EEEEEEEEEC
T ss_pred CCCeEEEEeCCCChHHHHHHHHHHc----C--CcEEEEEEeC
Confidence 3578999999999898888877663 5 6999999874
No 58
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=87.81 E-value=4.7 Score=27.18 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=53.7
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
|+||.|-++++-....++-.+.+- ...+ ++|.+|-...+.. .+.
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-~~l~--~eI~~Visn~~~a---------------------------------~v~ 45 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-GQLP--CEVALLITDKPGA---------------------------------KVV 45 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-TCCS--SEEEEEEESCSSS---------------------------------HHH
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-CCCC--cEEEEEEECCCCc---------------------------------HHH
Confidence 578999999988777777777654 3334 5666654432221 244
Q ss_pred HHHHhcCCcceEEEEEec--CCh---hhHHHHHhhhhCCCEEEEeecC
Q 031383 85 AVYRNFQNNIHVKRVVGC--GDA---KDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~--g~~---~~~i~~~a~~~~~dllvig~~~ 127 (160)
+.+++.| +++...... .+. ..++++..++.++|++|+...+
T Consensus 46 ~~A~~~g--Ip~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 46 ERVKVHE--IPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp HHHHTTT--CCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHcC--CCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 5566677 766433221 121 3578889999999999997554
No 59
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=87.80 E-value=5.4 Score=27.84 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=25.1
Q ss_pred EEecCChHHHHHHHHHHHhcCCCCCCC--eEEEEEEeC
Q 031383 10 VAVDESEESMHALSWCLNNLFSPDTNN--TLVLLYVKP 45 (160)
Q Consensus 10 v~~d~s~~s~~al~~a~~~a~~~~~~a--~l~~l~v~~ 45 (160)
++...++.+..|++.|.+++...+ . +++++.+=+
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g--~~~~V~av~~G~ 66 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSD--TDVEVVVVSVGP 66 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCS--SCCEEEEEEESC
T ss_pred CCCccCHHHHHHHHHHHHHHHhcC--CCceEEEEEeCc
Confidence 344457889999999999976655 4 888776653
No 60
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=87.73 E-value=1.2 Score=26.70 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCcceEEEEEe-cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+..++.+++.| ++++.... .+.. .++.. ++|++++|.+=+..... .+.......+||.+++.
T Consensus 23 v~km~~~a~~~g--i~v~i~a~~~~~~----~~~~~--~~DvvLLgPQV~y~~~~------ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 23 ANAINEGANLTE--VRVIANSGAYGAH----YDIMG--VYDLIILAPQVRSYYRE------MKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHHHT--CSEEEEEEETTSC----TTTGG--GCSEEEECGGGGGGHHH------HHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHHHCC--CceEEEEcchHHH----Hhhcc--CCCEEEEChHHHHHHHH------HHHHhhhcCCcEEEeCH
Confidence 344444455567 66666542 2332 22333 79999999765544332 25566667899999874
No 61
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=87.07 E-value=5 Score=26.72 Aligned_cols=36 Identities=6% Similarity=-0.010 Sum_probs=28.6
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
.+|+|+++|..+|..++..+.+.. -++.++|+-...
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~------~~v~~v~vd~g~ 80 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR------PDIPVILTDTGY 80 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS------TTCEEEEEECSC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC------CCCeEEEeeCCC
Confidence 489999999999998888887772 267888887643
No 62
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=86.67 E-value=2 Score=29.80 Aligned_cols=30 Identities=3% Similarity=-0.090 Sum_probs=23.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCC--eEEEEEEeC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNN--TLVLLYVKP 45 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a--~l~~l~v~~ 45 (160)
..++.+..|++.|.++... + . +++++.+=+
T Consensus 34 ~lnp~d~~Ale~A~~Lke~-g--~~~~V~av~~G~ 65 (252)
T 1efp_B 34 SMNPFDEIAVEEAIRLKEK-G--QAEEIIAVSIGV 65 (252)
T ss_dssp EECHHHHHHHHHHHHHHTT-T--SCSEEEEEEEES
T ss_pred cCCHHHHHHHHHHHHHHhc-C--CCceEEEEEeCC
Confidence 3467889999999999765 4 4 888887664
No 63
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=86.22 E-value=8.9 Score=28.76 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=29.0
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
.++|+|+++|.-+|..++.++.+. + .+++.+++.-.
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke~----G--~eViavt~d~G 49 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCEK----G--FDVIAYVANVG 49 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHT----T--CEEEEEEEESS
T ss_pred cCCEEEEeCCcHHHHHHHHHHHHC----C--CeEEEEEEEcC
Confidence 378999999999999888888654 5 58888888643
No 64
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=85.31 E-value=6.7 Score=26.49 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=50.7
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+++||.|-+.++.....++-.++.- ...+ ++|.+|-...+... .
T Consensus 7 ~~~ri~vl~SG~gsnl~all~~~~~-~~~~--~~I~~Vis~~~~a~---------------------------------~ 50 (215)
T 3kcq_A 7 KELRVGVLISGRGSNLEALAKAFST-EESS--VVISCVISNNAEAR---------------------------------G 50 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHTCC-C-CS--EEEEEEEESCTTCT---------------------------------H
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHc-CCCC--cEEEEEEeCCcchH---------------------------------H
Confidence 4678999999988777666665532 1122 34444433222211 0
Q ss_pred HHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.+.+++.| +++.......-..+++.+..++.++|++|+....
T Consensus 51 l~~A~~~g--Ip~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 51 LLIAQSYG--IPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp HHHHHHTT--CCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcC--CCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 13456677 6665432222123788899999999999997554
No 65
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=84.64 E-value=4.1 Score=31.58 Aligned_cols=96 Identities=10% Similarity=0.129 Sum_probs=58.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCC--CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFD--AAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNF 90 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (160)
|..-....||..|++. + ..|..|+|+++........ ..+....+ .....-..+.+..+...+++.
T Consensus 14 DLRl~DN~AL~~A~~~----~--~~vlpvfi~dp~~~~~~~~~~~~g~~~~g-------~~r~~Fl~~sL~~L~~~L~~~ 80 (537)
T 3fy4_A 14 GLRVHDNPALEYASKG----S--EFMYPVFVIDPHYMESDPSAFSPGSSRAG-------VNRIRFLLESLKDLDSSLKKL 80 (537)
T ss_dssp CCCSTTCHHHHHHHTT----C--SCEEEEEEECHHHHSCCTTSSSSBCSSCB-------HHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccchhHHHHHHHhc----C--CCEEEEEEeChhhhcccccccccccccCC-------HHHHHHHHHHHHHHHHHHHHc
Confidence 5555566788888753 4 4899999997643210000 00000000 112234445566666667777
Q ss_pred CCcceEEEEEecCChhhHHHHHhhhhCCCEEEEee
Q 031383 91 QNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 91 ~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~ 125 (160)
| ....++.|++.+.|.+.+++.+++.|+...
T Consensus 81 G----~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~ 111 (537)
T 3fy4_A 81 G----SRLLVFKGEPGEVLVRCLQEWKVKRLCFEY 111 (537)
T ss_dssp T----CCCEEEESCHHHHHHHHHTTSCEEEEEECC
T ss_pred C----CceEEEECCHHHHHHHHHHHcCCCEEEEec
Confidence 7 445566799999999999999999998864
No 66
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=84.41 E-value=7.4 Score=26.26 Aligned_cols=84 Identities=15% Similarity=0.032 Sum_probs=51.7
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.+.||.|-++++.....++-.+.. ...+ ++|.+| +..... ..
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~--~~~~--~eI~~V--is~~~a--------------------------------~~ 52 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAV--GDYP--ARVVAV--GVDREC--------------------------------RA 52 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSS--TTCS--EEEEEE--EESSCC--------------------------------HH
T ss_pred CCcEEEEEEeCChHHHHHHHHHHh--ccCC--CeEEEE--EeCCch--------------------------------HH
Confidence 467899999998777777666552 2233 566554 432212 01
Q ss_pred HHHHHhcCCcceEEEEEec--CC---hhhHHHHHhhhhCCCEEEEeecC
Q 031383 84 EAVYRNFQNNIHVKRVVGC--GD---AKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~--g~---~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.+.+++.| +++...-.. .+ ..+++.+..++.++|++|+....
T Consensus 53 ~~~A~~~g--Ip~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 53 AEIAAEAS--VPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp HHHHHHTT--CCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHcC--CCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 34556677 766544221 11 14578888999999999997654
No 67
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=84.16 E-value=7.1 Score=25.83 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=28.9
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
.++|+|+++|.-+|..++..+.+. + .++..+|+...
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~----~--~~v~~~~~~~~ 38 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE----F--EEVETVTFHYN 38 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----C--SEEEEEEEESS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc----C--CceEEEEEeCC
Confidence 468999999999999888887665 3 38888888754
No 68
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=84.08 E-value=11 Score=28.09 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=29.3
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
++|+++++|.-+|..++.++.+.. + .++.++|+-...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~---g--~~V~av~vd~g~ 37 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY---R--AEVIAFTADIGQ 37 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---T--CEEEEEEEESSC
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh---C--CcEEEEEEeCCC
Confidence 479999999999998888886542 4 588899987544
No 69
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=83.89 E-value=12 Score=28.61 Aligned_cols=117 Identities=10% Similarity=0.066 Sum_probs=70.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
|.--....||..|++. + .+..|+++++....... .. .......-+.+..+.+.+++.|
T Consensus 21 DLRl~DN~aL~~A~~~----~---~v~pvfi~dp~~~~~~~-------~~-------~~~~~fl~~sL~~L~~~L~~~G- 78 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G---PVIALFVWAPEEEGHYH-------PG-------RVSRWWLKNSLAQLDSSLRSLG- 78 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S---CEEEEEEECGGGGTTCC-------CC-------HHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCccchhHHHHHHHhC----C---CEEEEEEECchhcccCC-------cc-------hHHHHHHHHHHHHHHHHHHHCC-
Confidence 4445566788888875 3 46788888765321000 00 0111134556666677777778
Q ss_pred cceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 93 NIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 93 ~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+.+ .+.. |++.+.|.+.+++.+++.|+....- ...... ...-....+....+++..+..
T Consensus 79 -~~L--~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~-~p~~~~-rd~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 79 -TCL--ITKRSTDSVASLLDVVKSTGASQIFFNHLY-DPLSLV-RDHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp -CCE--EEEECSCHHHHHHHHHHHHTCCEEEEECCC-SHHHHH-HHHHHHHHHHTTTCEEEEECC
T ss_pred -CeE--EEEeCCCHHHHHHHHHHHcCCCEEEEeccc-CHHHHH-HHHHHHHHHHHcCcEEEEECC
Confidence 443 4444 6999999999999999999986432 222211 122335556666788877654
No 70
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=83.64 E-value=8.6 Score=27.37 Aligned_cols=91 Identities=11% Similarity=0.182 Sum_probs=55.3
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCC------------------CCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFS------------------PDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKA 67 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~------------------~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 67 (160)
.+|+|+++|..+|..++..+.+.... .+ .++.++|+.....+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~i~vv~iDtg~~f------------------ 113 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPM--QRLPTVFIDQEETF------------------ 113 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCC--CCEEEEECCCTTCC------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCC--CCeeEEEEeCCCCC------------------
Confidence 47999999999999888877765311 12 46888888765433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEe----cCChhhHHHHHhhhh-CCCEEEEeecC
Q 031383 68 VEKYASESVNSVMNRAEAVYRNFQNNIHVKRVVG----CGDAKDVICGTVEKL-EADTLVMGSHG 127 (160)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~i~~~a~~~-~~dllvig~~~ 127 (160)
... .+.+....++++ +++..... .....+.+.++++.. ..+.+++|.+.
T Consensus 114 ------pet---~~fv~~~~~~yg--l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 114 ------PTL---ENFVLETSERYC--LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp ------HHH---HHHHHHHHHHTT--EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred ------HHH---HHHHHHHHHHcC--CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 112 222333445566 55533211 124556666666653 57899999764
No 71
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=83.49 E-value=7.7 Score=29.55 Aligned_cols=118 Identities=13% Similarity=0.065 Sum_probs=70.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
|.--....||..|++. . ..|..|+++++........ ......-.-+.+..+.+.+++.|
T Consensus 12 DLRl~Dn~aL~~A~~~----~--~~v~~vfi~dp~~~~~~~~--------------~~~r~~fl~~sL~~L~~~L~~~G- 70 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQ----S--AQLIGLFCLDPQILQSADM--------------APARVAYLQGCLQELQQRYQQAG- 70 (484)
T ss_dssp CCCSSSCHHHHHHHHH----C--SCEEEEEEECHHHHTCTTC--------------CHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCCcchhHHHHHHHhc----C--CCEEEEEEEcchhhcCCCC--------------CHHHHHHHHHHHHHHHHHHHHCC-
Confidence 4444455678888764 2 2688999987642210000 01122344455566666667777
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+. ..+..|++.+.|.+.+++.+++.|+....-.. .... ...-+.+.+....+++..+..
T Consensus 71 -~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p-~~~~-rd~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 71 -SR--LLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEP-YGRD-RDGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp -SC--EEEEESCHHHHHHHHHHHTTCSEEEEECCCSH-HHHH-HHHHHHHHHHHTTCEEEEECC
T ss_pred -Ce--EEEEeCCHHHHHHHHHHHcCCCEEEEeccCCh-hHHH-HHHHHHHHHHHcCcEEEEecC
Confidence 43 44556999999999999999999998643222 2221 223344555666788777653
No 72
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=83.00 E-value=14 Score=28.30 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=28.8
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
++|+++++|.-+|..++..+.+. + .++.++|+-..
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g--~~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----G--VDHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----T--CEEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHHc----C--CeEEEEEEeCC
Confidence 68999999999999888877765 4 48999998654
No 73
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=82.87 E-value=0.91 Score=28.48 Aligned_cols=55 Identities=9% Similarity=0.072 Sum_probs=36.8
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec-CCcccc---eeeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH-GYGFIK---RALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~-~~~~~~---~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
...+.|.+++++.+++.||+|-. ..++-. ....-..++.|-...+.||..+.+..
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERl 98 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERL 98 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 45789999999999999999932 222211 11223455666666689999886543
No 74
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=82.77 E-value=9.7 Score=26.39 Aligned_cols=29 Identities=7% Similarity=-0.092 Sum_probs=22.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCCC--eEEEEEEeC
Q 031383 14 ESEESMHALSWCLNNLFSPDTNN--TLVLLYVKP 45 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a--~l~~l~v~~ 45 (160)
.++.+..|++.|.++... + . +++++.+=+
T Consensus 38 lnp~d~~Ale~A~~Lke~-g--~~~~V~av~~G~ 68 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK-K--LVKEVIAVSCGP 68 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT-T--SCSEEEEEEEES
T ss_pred CCHHHHHHHHHHHHHHhc-C--CCceEEEEEeCC
Confidence 357788999999999765 4 4 888887764
No 75
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=82.42 E-value=5.7 Score=29.92 Aligned_cols=117 Identities=10% Similarity=0.084 Sum_probs=69.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
|..-....||.+|++. + ..|..|+++++........ .......-.-+.+..+.+.+++.|
T Consensus 10 DLRl~DN~aL~~A~~~----~--~~v~~vfi~dp~~~~~~~~-------------~~~~r~~Fl~~sL~~L~~~L~~~G- 69 (440)
T 2e0i_A 10 DLRLEDNTGLNYALSE----C--DRVIPVFIADPRQLINNPY-------------KSEFAVSFMINSLLELDDELRKKG- 69 (440)
T ss_dssp CCCSSSCHHHHHHHHH----S--SEEEEEEEECHHHHSSCTT-------------CCHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred CCccchhHHHHHHHhc----C--CCEEEEEEeChhhhccCCc-------------CCHHHHHHHHHHHHHHHHHHHHcC-
Confidence 3333445688888773 4 4899999998642210000 001222344556666667777777
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+ ...+..|++.+.|.+.++ +++.|+....-.. ... -....+.+.+....+++..+..
T Consensus 70 -~--~L~v~~g~~~~~l~~l~~--~~~~v~~~~~~~~-~~~-~rd~~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 70 -S--RLNVFFGEAEKVVSRFFN--KVDAIYVNEDYTP-FSI-SRDEKIRKVCEENGIEFKAYED 126 (440)
T ss_dssp -C--CCEEEESCHHHHHHHHCT--TCSEEEEECCCSH-HHH-HHHHHHHHHHHTTTCEEEEECC
T ss_pred -C--eEEEEECCHHHHHHHHHc--CCCEEEEecccCh-HHH-HHHHHHHHHHHHcCceEEEecC
Confidence 3 344457999999999999 9999988543222 221 1223445556666788777654
No 76
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=82.24 E-value=0.83 Score=29.07 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=36.2
Q ss_pred ChhhHHHHHhhhhCCCEEEEeec----CCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSH----GYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~----~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
...+.|.+.+++++++.+|+|-. +.........-.++..+....++||..+.+..
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 57889999999999999999932 11111111112344456666689999987653
No 77
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=81.62 E-value=7.8 Score=27.40 Aligned_cols=72 Identities=7% Similarity=0.028 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh-cCCCCEEEecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK-HVKCPVVIVKH 156 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~-~~~~pVlvv~~ 156 (160)
...++...+++.+ +.++...... ..+..+.+.+.+ ++|.||+..- -+.+ ..+++.+.. ...+|+.++|-
T Consensus 27 ~~~~i~~~l~~~~--~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GG-DGTl-----~~v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 27 NLTKIVPPLAAAF--PDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGG-DGTV-----FECTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp HHHHHHHHHHHHC--SEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEEC-HHHH-----HHHHHHHTTCSSCCEEEEEEC
T ss_pred HHHHHHHHHHHcC--CeEEEEEccCcchHHHHHHHhhc-CCCEEEEEcc-chHH-----HHHHHHHhhCCCCCcEEEecC
Confidence 3445566666677 7777665544 566666666544 7887776422 2222 224444544 25689999986
Q ss_pred CCC
Q 031383 157 PEE 159 (160)
Q Consensus 157 ~~~ 159 (160)
...
T Consensus 98 Gt~ 100 (304)
T 3s40_A 98 GTC 100 (304)
T ss_dssp SSC
T ss_pred CcH
Confidence 543
No 78
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=81.42 E-value=2.2 Score=20.76 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=22.5
Q ss_pred cceEEEEEecC-ChhhHHHHHhhhhCCCEE
Q 031383 93 NIHVKRVVGCG-DAKDVICGTVEKLEADTL 121 (160)
Q Consensus 93 ~~~~~~~~~~g-~~~~~i~~~a~~~~~dll 121 (160)
+.++..+.... +..++|++|+++.+.|-+
T Consensus 9 kkkvslhllvdpdmkdeiikyaqekdfdnv 38 (54)
T 3gxq_A 9 KKKVSLHLLVDPDMKDEIIKYAQEKDFDNV 38 (54)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHHHHSTTCH
T ss_pred cceeEEEEeeCCchhHHHHHHHHHccchhH
Confidence 34566666665 899999999999888753
No 79
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=81.20 E-value=10 Score=25.51 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=28.6
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
+++++|.++|.-+|..++.++.+. . .++..+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~----~--~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD----Y--DDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----C--SEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc----C--CCEEEEEEECC
Confidence 478999999999999888888765 2 37888887643
No 80
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=81.11 E-value=8.5 Score=27.62 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHh-hcCCCCEEEec
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCA-KHVKCPVVIVK 155 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll-~~~~~pVlvv~ 155 (160)
+..+++...+++.+ +.+....... ..+..+.+.+...++|+||+..-+ +. +..+++.+. ....+|+.++|
T Consensus 42 ~~~~~i~~~L~~~g--~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGD-GT-----v~~v~~~l~~~~~~~pl~iIP 113 (337)
T 2qv7_A 42 RELPDALIKLEKAG--YETSAYATEKIGDATLEAERAMHENYDVLIAAGGD-GT-----LNEVVNGIAEKPNRPKLGVIP 113 (337)
T ss_dssp HHHHHHHHHHHHTT--EEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECH-HH-----HHHHHHHHTTCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHcC--CeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCc-hH-----HHHHHHHHHhCCCCCcEEEec
Confidence 34455666677777 6666554443 455556655555678877764222 21 233445553 24578999998
Q ss_pred CCC
Q 031383 156 HPE 158 (160)
Q Consensus 156 ~~~ 158 (160)
-..
T Consensus 114 ~GT 116 (337)
T 2qv7_A 114 MGT 116 (337)
T ss_dssp CSS
T ss_pred CCc
Confidence 654
No 81
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=80.59 E-value=11 Score=28.12 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=66.0
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
|.--....||..|++. +.+..|+++++.... . ......-.-+.+..+.+.+++.|
T Consensus 11 DlRl~Dn~aL~~A~~~-------~~v~~vfi~d~~~~~-~----------------~~~r~~fl~~sL~~l~~~L~~~g- 65 (420)
T 2j07_A 11 DLRLHDHPALLEALAR-------GPVVGLVVLDPNNLK-T----------------TPRRRAWFLENVRALREAYRARG- 65 (420)
T ss_dssp CCCSTTCHHHHHHHTT-------SCEEEEEEECHHHHS-S----------------CHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCccccHHHHHHHhC-------CCEEEEEEECCcccc-C----------------CHHHHHHHHHHHHHHHHHHHHCC-
Confidence 4444455677777653 267888888754221 0 11222344455666666777777
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+ ...+..|++.+.|.+.+++.+++.|+....-.. .....- +.|-..+.|++..+..
T Consensus 66 -~--~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~-~~~~rd----~~v~~~l~i~~~~~~~ 121 (420)
T 2j07_A 66 -G--ALWVLEGLPWEKVPEAARRLKAKAVYALTSHTP-YGRYRD----GRVREALPVPLHLLPA 121 (420)
T ss_dssp -C--CEEEEESCHHHHHHHHHHHTTCSEEEEECCCSH-HHHHHH----HHHHHHCSSCEEEECC
T ss_pred -C--eEEEEeCCHHHHHHHHHHHcCCCEEEEecccCh-hHHHHH----HHHHHHcCCeEEEeCC
Confidence 4 345567999999999999999999998643222 121111 2232223777776653
No 82
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=79.65 E-value=14 Score=26.29 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=53.2
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.++||+|-+.++.....++-.+.+- ...+ ++|.++-.-.+. +
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~--~~I~~Visn~~~-----------------------------------~ 145 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHS-DELD--CDIACVISNHQD-----------------------------------L 145 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHT-TCSC--SEEEEEEESSST-----------------------------------T
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHC-CCCC--cEEEEEEECcHH-----------------------------------H
Confidence 4678999999988777777777654 3333 566555443322 1
Q ss_pred HHHHHhcCCcceEEEEEec-C-C--hhhHHHHHhhhhCCCEEEEeecC
Q 031383 84 EAVYRNFQNNIHVKRVVGC-G-D--AKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-g-~--~~~~i~~~a~~~~~dllvig~~~ 127 (160)
...+++.| +++...... . . ...++++..++.++|++|+....
T Consensus 146 ~~~A~~~g--Ip~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 146 RSMVEWHD--IPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp HHHHHTTT--CCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcC--CCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 12355677 776544211 1 2 23578899999999999997654
No 83
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=79.35 E-value=3.1 Score=32.07 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=28.5
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
++|+++++|.-+|..++..+.+.. + .+++++|+...
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~~---G--~~v~av~vd~g 266 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKAI---G--DQLVCVLVDTG 266 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHHH---G--GGEEEEEECCS
T ss_pred CeEEEEEecCcCHHHHHHHHHHHh---C--CeEEEEEeccC
Confidence 789999999999988887776642 3 48899998654
No 84
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=79.21 E-value=20 Score=27.65 Aligned_cols=131 Identities=9% Similarity=0.071 Sum_probs=74.1
Q ss_pred eEEEEEe--cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAV--DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 6 ~~Ilv~~--d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+.+|+=+ |.--....||..|+.. + ..|..|+++++........ .+.... ......-.-+.+..+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~--~~v~~vfi~dp~~~~~~~~-~~~~~~-------~~~r~~Fl~~sL~~L 105 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----S--DTILPVYCLDPRLFHTTHF-FNFPKT-------GALRGGFLMECLVDL 105 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----C--SEEEEEEEECGGGGSBCTT-TCCBSS-------CHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----C--CcEEEEEEECchhhccccc-ccCCCC-------CHHHHHHHHHHHHHH
Confidence 4455554 4444556688887764 3 3789999998753211000 000000 011223444556666
Q ss_pred HHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC--CCEEEecC
Q 031383 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK--CPVVIVKH 156 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~--~pVlvv~~ 156 (160)
.+.+++.| + ...++.|++.+.|.+.+++.+++.|+.-..-. ...... ...+.+.+.... |++..+..
T Consensus 106 ~~~L~~~G--~--~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-p~~~~r-d~~v~~~l~~~gv~i~~~~~~~ 174 (525)
T 2j4d_A 106 RKNLMKRG--L--NLLIRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVDV-ERLVNQGLKRVGNSTKLELIWG 174 (525)
T ss_dssp HHHHHHTT--C--CCEEEESCHHHHHHHHHHHHTCSEEEEECCCS-HHHHHH-HHHHHHHHHTTCSSCEEEEECC
T ss_pred HHHHHHcC--C--eEEEEeCCHHHHHHHHHHHcCCCEEEEeccCC-HHHHHH-HHHHHHHHHhcCCceEEEEecC
Confidence 66677777 3 34446699999999999999999999864322 222211 233344555555 67766654
No 85
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=78.62 E-value=14 Score=25.54 Aligned_cols=40 Identities=5% Similarity=-0.113 Sum_probs=31.7
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
+.+|+|+++|..+|...+..+.++... + .++.++|+-...
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~--~~i~vv~iDtg~ 80 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-Y--YMPELLFIDTLH 80 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-S--CCCEEEEECCSC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-C--CCeeEEEecCCC
Confidence 457999999999999999988887654 3 478888886544
No 86
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=77.49 E-value=9.4 Score=24.33 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=41.2
Q ss_pred HHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC--CCCEEEe
Q 031383 83 AEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV--KCPVVIV 154 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~--~~pVlvv 154 (160)
+...++..| ++...... .+.+.+++.+.+.++|+|.+.......... +..+.+.|-... .++|++=
T Consensus 38 va~~l~~~G----~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~--~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 38 VARALRDAG----FEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHL--MKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp HHHHHHHTT----CEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHH--HHHHHHHHHHTTCTTSCEEEE
T ss_pred HHHHHHHCC----CEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHH--HHHHHHHHHhcCCCCCEEEEe
Confidence 445566677 55554433 688899999999999999998764433322 233444443332 3677664
No 87
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=77.34 E-value=19 Score=26.57 Aligned_cols=78 Identities=8% Similarity=0.029 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
...+.+.+++|+++|++.. .+|+++|= .+.. +...-+.+.+.+..++++ .+
T Consensus 178 r~~~eRIar~AFe~A~~rr--kkVT~v~K--aNvl------------------------~~~glf~~~~~eva~eyp-dV 228 (375)
T 3vmk_A 178 RKEIRRIAKIAFESAQGRR--KKVTSVDK--ANVL------------------------ACSVLWREVVEEVAKDYP-DV 228 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEEC--TTTC------------------------HHHHHHHHHHHHHHTTCT-TS
T ss_pred HHHHHHHHHHHHHHHHHcC--CcEEEEEC--chhh------------------------hhhhHHHHHHHHHHHHCC-Cc
Confidence 3578899999999999876 58888773 3322 111233444555555665 57
Q ss_pred eEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 95 ~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.++..... +.+-.++..= ...|+||+.
T Consensus 229 ~~~~~~VD-~~am~lv~~P--~~FDViVt~ 255 (375)
T 3vmk_A 229 ELEHIYID-NATMQLLRRP--NEFDVMLCS 255 (375)
T ss_dssp EEEEEEHH-HHHHHHHHCG--GGCSEEEEC
T ss_pred eEeeeeHH-HHHHHHHhCc--ccCcEEEEC
Confidence 77766653 4444555433 378988875
No 88
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=76.97 E-value=13 Score=24.47 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=28.0
Q ss_pred EEecCChhhHHH--HHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 99 VVGCGDAKDVIC--GTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 99 ~~~~g~~~~~i~--~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.+..++..+.+. +.. ..++|++|-. |.++..|-++.+.||+-++..
T Consensus 32 ~i~~~~l~~~v~~a~~~-~~~~dVIISR------------Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 32 ITKTASLTRASKIAFGL-QDEVDAIISR------------GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp EEEECCHHHHHHHHHHH-TTTCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred EEEECCHHHHHHHHHHh-cCCCeEEEEC------------ChHHHHHHHhCCCCEEEEcCC
Confidence 344555444332 233 5688855542 446677777788999988753
No 89
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=76.54 E-value=5.2 Score=24.84 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=26.8
Q ss_pred CCCCceEEEEEecCChH----HHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 1 MNTNERRVVVAVDESEE----SMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~----s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
|...|+++++.+..+++ +..++++|...+.. + .++.++..-+.
T Consensus 1 ~~~~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~-~--~~v~Vff~~DG 47 (136)
T 2hy5_B 1 MSEVVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF-D--QDVCVLFLDDG 47 (136)
T ss_dssp ----CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG-C--CEEEEEECGGG
T ss_pred CccchhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC-C--CCEEEEEEhHH
Confidence 66778899999977765 45677777766555 3 37766665543
No 90
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=76.19 E-value=18 Score=25.61 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=53.6
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
..+||+|-+.++.....++-.+.+- ...+ ++|.++-.-.+..
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~--~~i~~Visn~~~~----------------------------------- 135 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKM-GELK--MDIVGIVSNHPDF----------------------------------- 135 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHH-TSSC--CEEEEEEESSSTT-----------------------------------
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHc-CCCC--cEEEEEEeCcHHH-----------------------------------
Confidence 4578999999988888888777665 3334 5665544332221
Q ss_pred HHHHHhcCCcceEEEEEec-CC---hhhHHHHHhhhhCCCEEEEeecC
Q 031383 84 EAVYRNFQNNIHVKRVVGC-GD---AKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-g~---~~~~i~~~a~~~~~dllvig~~~ 127 (160)
...+++.| +++...... .+ ...++++..++.++|++|+....
T Consensus 136 ~~~A~~~g--Ip~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 136 APLAAQHG--LPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp HHHHHHTT--CCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHcC--CCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 12355677 776653222 12 23478899999999999997654
No 91
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=76.17 E-value=11 Score=23.20 Aligned_cols=67 Identities=9% Similarity=-0.038 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC--CCCEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV--KCPVVIV 154 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~--~~pVlvv 154 (160)
-+...++..| ++..-.. ..+.+.+++.+.++++|+|.+......... .+..+.+.|-... +++|++=
T Consensus 22 ~v~~~l~~~G----~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 22 ILDHAFTNAG----FNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHHHTT----CEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHHCC----CEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEE
Confidence 3445666777 5555332 378899999999999999999876543332 2344555554432 3666553
No 92
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=75.62 E-value=18 Score=25.46 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=53.1
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
..+||+|-+.++.....++-.+.+- ...+ ++|.++-.-.+..
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~--~~i~~Visn~~~~----------------------------------- 130 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRI-GQLG--MDVVAVVSNHPDL----------------------------------- 130 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHT-TSSC--CEEEEEEESSSTT-----------------------------------
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHC-CCCC--cEEEEEEeCcHHH-----------------------------------
Confidence 4578999999988787777777654 3333 5665554433221
Q ss_pred HHHHHhcCCcceEEEEEec-CC---hhhHHHHHhhhhCCCEEEEeecC
Q 031383 84 EAVYRNFQNNIHVKRVVGC-GD---AKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-g~---~~~~i~~~a~~~~~dllvig~~~ 127 (160)
...+++.| +++...... .+ ...++++..++.++|++|+....
T Consensus 131 ~~~A~~~g--Ip~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 131 EPLAHWHK--IPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp HHHHHHTT--CCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHcC--CCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 12345677 776643221 11 23478899999999999997554
No 93
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=75.27 E-value=19 Score=25.67 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=40.1
Q ss_pred cceEEEEEecCChhhH--HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 93 NIHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~--i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
++++-..+.. +..+. +.+.+++.++|-+.+-..-......--+=..-..|...++.||++..
T Consensus 81 rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 81 RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3666666666 65554 46888999999998875433222211112234678888999999975
No 94
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=75.04 E-value=10 Score=27.01 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=28.8
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
++|+|+++|.-+|..++..+.+.. + .++.++|+-...
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~---g--~~v~av~vd~g~ 57 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAI---G--DRLHAVFVNTGF 57 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHH---G--GGEEEEEEECSC
T ss_pred CCEEEEEeChHHHHHHHHHHHHhh---C--CCEEEEEEcCCC
Confidence 689999999999988888777652 3 378889887543
No 95
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=74.81 E-value=20 Score=25.48 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=26.1
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
..+++++.++| -+|..|+..+.+ .+ .++..+|..
T Consensus 178 ~~~kvlvllSG-vDS~vaa~ll~~----~G--~~v~~v~~~ 211 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIFLMMK----RG--VEVIPVYIG 211 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHHHHHH----BT--CEEEEEEES
T ss_pred CCCcEEEEEeC-CcHHHHHHHHHh----CC--CeEEEEEEE
Confidence 34689999999 888766665554 36 699999987
No 96
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=74.42 E-value=17 Score=24.42 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=35.8
Q ss_pred HHHHHhcCCcceEEEEEecC--C---hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 84 EAVYRNFQNNIHVKRVVGCG--D---AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g--~---~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+.+++.| +++....... + ..+++++..++.++|++|+...++- +...++...+..++=+++
T Consensus 44 ~~~A~~~g--Ip~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~i---------l~~~~l~~~~~~~iNiHp 110 (216)
T 2ywr_A 44 IERCKKHN--VECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMRI---------LSHNFLKYFPNKVINIHP 110 (216)
T ss_dssp HHHHHHHT--CCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSC---------CCHHHHTTSTTCEEEEES
T ss_pred HHHHHHcC--CCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCchhh---------CCHHHHhhccCCeEEEcC
Confidence 34556667 6654322111 1 1357888889999999999755322 124455555555555543
No 97
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=74.05 E-value=21 Score=26.13 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
...+.+.+++|+++|++.. .+|+++|= .+.. +...-+++.+.+..++++ .+
T Consensus 166 r~~~eRIar~AFe~A~~rr--kkVT~v~K--aNvl------------------------~t~glf~~~~~eva~eyp-dV 216 (361)
T 3udu_A 166 KKEIERIARIAFESARIRK--KKVHLIDK--ANVL------------------------ASSILWREVVANVAKDYQ-DI 216 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SEEEEEEC--TTTC------------------------HHHHHHHHHHHHHGGGCT-TS
T ss_pred HHHHHHHHHHHHHHHHHcC--CcEEEEEC--chhh------------------------ccchHHHHHHHHHHHHCC-CC
Confidence 3568899999999998876 58888873 2322 111223344555556665 57
Q ss_pred eEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 95 ~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.++..... +.+-.++..= ...|+||+.
T Consensus 217 ~~~~~~VD-~~am~lv~~P--~~FDViVt~ 243 (361)
T 3udu_A 217 NLEYMYVD-NAAMQIVKNP--SIFDVMLCS 243 (361)
T ss_dssp EEEEEEHH-HHHHHHHHCG--GGCSEEEEC
T ss_pred eEEeeeHH-HHHHHHHhCc--ccCcEEEec
Confidence 77766653 4444454433 478988875
No 98
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=73.52 E-value=8.1 Score=22.79 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+.+++.+.+.+ +.++.....-... .++.. ++|+++.+..-.....+ .+......++||.++++
T Consensus 22 ~kl~~~~~~~g--i~~~i~~~~~~~~---~~~~~--~~D~Ii~t~~l~~~~~~------~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 22 QRIEKYAKSKN--INATIEAIAETRL---SEVVD--RFDVVLLAPQSRFNKKR------LEEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHHHHHT--CSEEEEEECSTTH---HHHTT--TCSEEEECSCCSSHHHH------HHHHHHHHTCCEEECCH
T ss_pred HHHHHHHHHCC--CCeEEEEecHHHH---HhhcC--CCCEEEECCccHHHHHH------HHHHhcccCCCEEEECh
Confidence 34555556667 6655433322222 22233 79999998653332211 12333344678877753
No 99
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=73.50 E-value=10 Score=22.77 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh---cCCCCEEEecCC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK---HVKCPVVIVKHP 157 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~---~~~~pVlvv~~~ 157 (160)
+.+...+.+.+ ..+. +....-..+.++......+|+|++...-. ...+ -...+.|-. ...+||+++-..
T Consensus 19 ~~l~~~L~~~~--~~~~--v~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 19 ALIRRVLDRKD--IHCQ--LEFVDNGAKALYQVQQAKYDLIILDIGLP-IANG---FEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHHHTT--CCEE--EEEESSHHHHHHHHTTCCCSEEEECTTCG-GGCH---HHHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHHHhcC--CCee--EEEECCHHHHHHHhhcCCCCEEEEeCCCC-CCCH---HHHHHHHHhcccccCCCEEEEeCC
Confidence 34445555566 3322 22223344455666777899999985421 1111 123344444 235899988544
No 100
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=72.87 E-value=19 Score=25.74 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh---cCCCCEEEecC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK---HVKCPVVIVKH 156 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~---~~~~pVlvv~~ 156 (160)
.++...+.+.+ +.+....... ..+..+...+...++|+||+..-+ +. +..+++.+.. ...+|+.++|-
T Consensus 47 ~~i~~~l~~~g--~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGD-GT-----l~~v~~~l~~~~~~~~~plgiiP~ 118 (332)
T 2bon_A 47 REAIMLLREEG--MTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGD-GT-----INEVSTALIQCEGDDIPALGILPL 118 (332)
T ss_dssp HHHHHHHHTTT--CCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESH-HH-----HHHHHHHHHHCCSSCCCEEEEEEC
T ss_pred HHHHHHHHHcC--CcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccc-hH-----HHHHHHHHhhcccCCCCeEEEecC
Confidence 34455666677 6666554432 344455554444578877664222 21 2335566664 45689999886
Q ss_pred CC
Q 031383 157 PE 158 (160)
Q Consensus 157 ~~ 158 (160)
..
T Consensus 119 Gt 120 (332)
T 2bon_A 119 GT 120 (332)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 101
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=72.63 E-value=23 Score=25.09 Aligned_cols=64 Identities=30% Similarity=0.266 Sum_probs=41.1
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+++-..+...+..+ ++.+.+++.++|-+++...-......--+=..-+.|...++.||++..-+
T Consensus 74 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 139 (300)
T 3eb2_A 74 VPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNP 139 (300)
T ss_dssp SCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECT
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECc
Confidence 55555555544444 55678999999999987544332222111224577889999999998643
No 102
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=72.59 E-value=23 Score=25.13 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=39.9
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+ ++.+.+++.++|-+++...-......--+=..-+.|...++.||++..
T Consensus 85 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 148 (304)
T 3l21_A 85 ARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYD 148 (304)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 66655555445444 556789999999999985433222211112245778999999999985
No 103
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=72.57 E-value=14 Score=23.26 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCC-hhhHHHHHhhhhCCCEEEEeecCCc
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGD-AKDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
+++.+.+.+.+.+.| +.++..-.... ..+.+..... ++|.||+|+....
T Consensus 19 ~~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 19 DRLAQAIINGITKTG--VGVDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTT
T ss_pred HHHHHHHHHHHHHCC--CeEEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCC
Confidence 334444445555567 66665544444 4556665555 7999999976544
No 104
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=71.98 E-value=25 Score=25.32 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=39.4
Q ss_pred ceEEEEEecCChhhH--HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~--i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+. +.+.+++.++|-+.+...-......--+=..-+.|...++.||++..
T Consensus 104 vpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 167 (332)
T 2r8w_A 104 RTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYN 167 (332)
T ss_dssp SEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 666555555455554 46888999999998875433222211111234678888999999985
No 105
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=71.69 E-value=22 Score=24.79 Aligned_cols=64 Identities=9% Similarity=0.033 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+..+.+.+++.| +.+-+.+..-...+.+ .+ .+|++=+|+....... ..+.+ ..+.+||++=...
T Consensus 64 L~~l~~~~~e~G--lp~~te~~d~~~~~~l----~~-~vd~~~IgA~~~rn~~------ll~~~-a~~~~PV~lK~G~ 127 (267)
T 2nwr_A 64 VKALRKVKEEFG--LKITTDIHESWQAEPV----AE-VADIIQIPAFLCRQTD------LLLAA-AKTGRAVNVKKGQ 127 (267)
T ss_dssp HHHHHHHHHHHC--CEEEEECSSGGGHHHH----HT-TCSEEEECGGGTTCHH------HHHHH-HTTTSEEEEECCT
T ss_pred HHHHHHHHHhcC--CeEEEecCCHHhHHHH----Hh-cCCEEEECcccccCHH------HHHHH-HcCCCcEEEeCCC
Confidence 333555567788 8877766654444444 33 5899999987655443 33555 4678999886554
No 106
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=71.35 E-value=26 Score=25.33 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=38.8
Q ss_pred ceEEEEEecCChhhH--HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~--i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+. +.+.+++.++|-+++-..-......--+-..-..|...++.||++..
T Consensus 101 vpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 164 (343)
T 2v9d_A 101 VPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYN 164 (343)
T ss_dssp SCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 555555554455554 46788999999988875433222111111234678888999999975
No 107
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=70.96 E-value=22 Score=25.08 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=24.6
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
.++||+|-++++.....++-.+.+- ...+ ++|.++-
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~--~~i~~Vi 123 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRV-GDLH--MIPTAIV 123 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHT-TSSC--EEEEEEE
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHC-CCCC--eEEEEEE
Confidence 4678999999998888888777654 2223 4554443
No 108
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=70.86 E-value=20 Score=24.73 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=41.0
Q ss_pred HHHHHHhcCCcceEEEEEe-cCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc-CCCCEEEec
Q 031383 83 AEAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH-VKCPVVIVK 155 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~-~~~pVlvv~ 155 (160)
+...++..| ++.... ..-+.+.+++.++++++|+|.+.......... +..+.+.+-+. .++||++--
T Consensus 143 va~~L~~~G----~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~--~~~~i~~l~~~~~~~~v~vGG 211 (258)
T 2i2x_B 143 VTALLRANG----YNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYA--FKEVNDMLLENGIKIPFACGG 211 (258)
T ss_dssp HHHHHHHTT----CEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTH--HHHHHHHHHTTTCCCCEEEES
T ss_pred HHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHH--HHHHHHHHHhcCCCCcEEEEC
Confidence 344566677 444322 23788999999999999999998654333322 22333444333 238887753
No 109
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=70.85 E-value=25 Score=24.76 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=38.8
Q ss_pred ceEEEEEecCChhhH--HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 94 IHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~--i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+++-..+...+..+. +.+.+++.++|-+++-..-......--+-..-+.|...++.||++...
T Consensus 71 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (292)
T 2ojp_A 71 IPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV 135 (292)
T ss_dssp SCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECC
T ss_pred CcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 555555544455554 467788899998888754332222111122446788889999999853
No 110
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=70.74 E-value=25 Score=24.85 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=38.5
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+ ++.+.+++.++|-+++...-......--+=..-+.|...++.||++..
T Consensus 82 vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (301)
T 1xky_A 82 VPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYN 145 (301)
T ss_dssp SCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred ceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 55555554445555 456788999999888875433222211111234678888999999975
No 111
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=70.69 E-value=16 Score=24.16 Aligned_cols=67 Identities=10% Similarity=-0.034 Sum_probs=39.5
Q ss_pred HHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC---CCCEEEec
Q 031383 83 AEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV---KCPVVIVK 155 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~---~~pVlvv~ 155 (160)
+...++..| ++..... ..+.+.+.+.+++.++|+|.+.......... +..+.+.+-+.. .+||++--
T Consensus 108 va~~l~~~G----~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 108 VAMMLESGG----FTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMN--MKSTIDALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHHHTT----CEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHH--HHHHHHHHHHTTCGGGCEEEEES
T ss_pred HHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHhcCCCCCCeEEEEC
Confidence 334445555 4444332 3688899999999999999998654332221 233334443332 27877753
No 112
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=70.69 E-value=29 Score=25.48 Aligned_cols=79 Identities=9% Similarity=0.011 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNN 93 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (160)
....+.+.+++|+++|++.. .+|+++|=...- +...-+.+.+.+..++++ .
T Consensus 168 T~~~~eRiar~AFe~A~~rr--kkVt~v~KaNvl--------------------------k~~~lf~~~~~eva~eyp-d 218 (363)
T 1cnz_A 168 HRFEIERIARIAFESARKRR--RKVTSIDKANVL--------------------------QSSILWREIVNDVAKTYP-D 218 (363)
T ss_dssp EHHHHHHHHHHHHHHHHTTT--SEEEEEECTTTC--------------------------HHHHHHHHHHHHHHTTCT-T
T ss_pred cHHHHHHHHHHHHHHHHhcC--CeEEEEECCccc--------------------------ccchhHHHHHHHHHHHCC-C
Confidence 34678899999999999876 588888743222 111223444445555665 5
Q ss_pred ceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
+.++..... +.+-.++..=. ..|+||+.
T Consensus 219 I~~~~~~vD-~~~m~lv~~P~--~FDVivt~ 246 (363)
T 1cnz_A 219 VELAHMYID-NATMQLIKDPS--QFDVLLCS 246 (363)
T ss_dssp SEEEEEEHH-HHHHHHHHCGG--GCSEEEEC
T ss_pred ceEeeeeHH-HHHHHHhhCcc--cceEEEEC
Confidence 777765553 44444544444 78888875
No 113
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=70.50 E-value=25 Score=24.73 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=38.5
Q ss_pred ceEEEEEecCChhhH--HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~--i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+. +.+.+++.++|-+++-..-......--+-..-+.|...++.||++..
T Consensus 70 vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (294)
T 2ehh_A 70 IKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYN 133 (294)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 555555544455554 46788999999988875433222211111234678888999999985
No 114
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=70.28 E-value=29 Score=25.46 Aligned_cols=78 Identities=8% Similarity=-0.019 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
...+.+.+++|+++|++.. .+|+++|=...- +...-+.+.+.+..++++ .+
T Consensus 173 r~~~eRIar~AFe~A~~rr--kkVt~v~KaNvl--------------------------kt~glf~~~~~eva~eyp-dV 223 (366)
T 1vlc_A 173 RKTVERIARTAFEIAKNRR--KKVTSVDKANVL--------------------------YSSMLWRKVVNEVAREYP-DV 223 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEECTTTC--------------------------HHHHHHHHHHHHHHTTCT-TS
T ss_pred HHHHHHHHHHHHHHHHHcC--CeEEEEECCccc--------------------------ccchHHHHHHHHHHHHCC-Cc
Confidence 4678899999999999886 588887743222 211223444555555665 57
Q ss_pred eEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 95 ~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.++..... +.+-.++..=. ..|+||..
T Consensus 224 ~~~~~~VD-~~~mqlv~~P~--~FDVivt~ 250 (366)
T 1vlc_A 224 ELTHIYVD-NAAMQLILKPS--QFDVILTT 250 (366)
T ss_dssp EEEEEEHH-HHHHHHHHCGG--GCSEEEEC
T ss_pred eEEeeeHH-HHHHHHhhCcc--cceEEEEc
Confidence 77766553 44445555444 78988875
No 115
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=70.23 E-value=13 Score=21.37 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=26.8
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEe
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIV 154 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv 154 (160)
..+.++..+...+|++++...-.+...+. ...+.+-.. ..+||+++
T Consensus 38 ~~~a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 38 GKGSVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 34445556667899999985432111111 234555544 45899988
No 116
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=70.15 E-value=7.5 Score=26.14 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=28.2
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEE
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v 43 (160)
.++|++++.|+-.+-.+++..-.+.+. + .+++++.-
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~~-g--~eV~vv~T 39 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQE-E--REVHFLIS 39 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHHT-T--CEEEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-C--CEEEEEEC
Confidence 489999999998888888887777554 5 68776654
No 117
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=69.91 E-value=22 Score=25.04 Aligned_cols=62 Identities=15% Similarity=0.063 Sum_probs=38.4
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+ ++.+.+++.++|-+.+...-......--+-..-+.|...++.||++..
T Consensus 74 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 137 (293)
T 1f6k_A 74 IALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYS 137 (293)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 55555554445555 456788899999988875433222211112244668888899999975
No 118
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=69.88 E-value=31 Score=25.57 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
...+.+.+++|+++|++.. .+|+++|= .+.. ....-+.+.+.+..++++ .+
T Consensus 185 r~~~eRIar~AFe~A~~rr--kkVT~v~K--aNVl------------------------~t~glfr~~~~eva~eYP-dV 235 (390)
T 3u1h_A 185 REEIERIIRKAFELALTRK--KKVTSVDK--ANVL------------------------ESSRLWREVAEEVAKEYP-DV 235 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEEC--TTTC------------------------HHHHHHHHHHHHHHTTCT-TS
T ss_pred HHHHhHHHHHHHHHHHHcC--CceEEEEC--Cccc------------------------ccchHHHHHHHHHHhHCC-CC
Confidence 3578899999999999876 58888873 2322 111123333444455564 57
Q ss_pred eEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 95 ~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.++..... +.+-.++..= ...|+||+.
T Consensus 236 ~~~~~~VD-~~amqLV~~P--~~FDViVt~ 262 (390)
T 3u1h_A 236 ELEHMLVD-NAAMQLIRNP--RQFDVIVTE 262 (390)
T ss_dssp EEEEEEHH-HHHHHHHHCG--GGCSEEEEC
T ss_pred eEEeeeHH-HHHHHHHhCc--ccCcEEEec
Confidence 77766654 4444555433 478988875
No 119
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=69.65 E-value=24 Score=24.93 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=39.0
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+ ++.+.+++.++|-+++-..-......--+=..-+.|...++.||++..
T Consensus 78 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 141 (301)
T 3m5v_A 78 VKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYN 141 (301)
T ss_dssp CEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 55555444434444 455788999999999875433322221112244678889999999985
No 120
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=69.65 E-value=23 Score=26.89 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceE
Q 031383 17 ESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHV 96 (160)
Q Consensus 17 ~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (160)
....||.+|++. . . ..|..|+++++...... ........-.-+.+..+.+.+++.| +.+
T Consensus 14 ~DN~aL~~A~~~--~-~--~~v~~vfi~dp~~~~~~--------------~~~~~r~~fl~~sL~~L~~~L~~~G--~~L 72 (471)
T 1dnp_A 14 HDNLALAAACRN--S-S--ARVLALYIATPRQWATH--------------NMSPRQAELINAQLNGLQIALAEKG--IPL 72 (471)
T ss_dssp TTCHHHHHHSSS--T-T--SEEEEEEEECHHHHHHT--------------TCCHHHHHHHHHHHHHHHHHHHHTT--CCE
T ss_pred cchHHHHHHHhC--C-C--CCEEEEEEECchhhccC--------------CCCHHHHHHHHHHHHHHHHHHHHCC--CeE
Confidence 344577777653 1 2 38999999976421000 0001222344555666666777778 444
Q ss_pred EEEEe--cCChhhHHHHHhhhhCCCEEEEee
Q 031383 97 KRVVG--CGDAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 97 ~~~~~--~g~~~~~i~~~a~~~~~dllvig~ 125 (160)
..... .|++.+.|.+.+++.+++.|+...
T Consensus 73 ~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~ 103 (471)
T 1dnp_A 73 LFREVDDFVASVEIVKQVCAENSVTHLFYNY 103 (471)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred EEEEccCCCCHHHHHHHHHHHcCCCEEEEec
Confidence 33222 689999999999999999999854
No 121
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=69.60 E-value=26 Score=24.57 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=38.6
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+ ++.+.+++.++|-+.+-..-......--+-..-+.|...++.||++..
T Consensus 70 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (289)
T 2yxg_A 70 VQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYN 133 (289)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 55555554445555 446888999999988875433222221112244678888999999975
No 122
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=69.57 E-value=22 Score=24.99 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=38.3
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+ ++.+.+++.++|-+++-..-......--+-..-+.|...++.||++..
T Consensus 70 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (292)
T 2vc6_A 70 VPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYN 133 (292)
T ss_dssp SCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 55555555445554 456788999999988875433222111111233578888999999975
No 123
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=69.40 E-value=31 Score=25.30 Aligned_cols=78 Identities=13% Similarity=0.045 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
...+.+.+++|+++|++.. .+|+++|=...- +...-+.+.+.+..++++ .+
T Consensus 162 ~~~~eRIar~AFe~A~~rr--kkVt~v~KaNvl--------------------------k~~~lf~~~~~eva~eyp-dI 212 (359)
T 2y3z_A 162 KPEVERVARVAFEAARKRR--KHVVSVDKANVL--------------------------EVGEFWRKTVEEVGRGYP-DV 212 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEECTTTC--------------------------HHHHHHHHHHHHHHTTCT-TS
T ss_pred HHHHHHHHHHHHHHHHHcC--CeEEEEECCccc--------------------------cccHHHHHHHHHHHHHCC-cE
Confidence 3568899999999999876 588887743222 111123444445555665 57
Q ss_pred eEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 95 ~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.++..... +.+-.++..= ...|+||..
T Consensus 213 ~~~~~~VD-~~~mqlv~~P--~~FDVivt~ 239 (359)
T 2y3z_A 213 ALEHQYVD-AMAMHLVRSP--ARFDVVVTG 239 (359)
T ss_dssp EEEEEEHH-HHHHHHHHCG--GGCSEEEEC
T ss_pred EEEeeEHH-HHHHHHhhCc--ccccEEEEc
Confidence 77766553 4444455443 488988875
No 124
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=69.38 E-value=7.2 Score=29.94 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=31.7
Q ss_pred ChhhHHHHHh-hhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 104 DAKDVICGTV-EKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 104 ~~~~~i~~~a-~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+....+.+.+ ++.++|.||+-.+.-+. ++..-.+++..++|||+...
T Consensus 58 ~~~~~~~~~~n~~~~vdgvi~~~~TFs~------a~~~i~~l~~l~~PvL~~~~ 105 (500)
T 4f2d_A 58 DEITAICRDANYDDRCAGLVVWLHTFSP------AKMWINGLTMLNKPLLQFHT 105 (500)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEECCSCCC------THHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHHHhccccCCcEEEEeCCcCcc------HHHHHHHHHhcCCCEEEEeC
Confidence 3444555566 56689999987654443 33445678889999999754
No 125
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=69.01 E-value=28 Score=24.69 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=38.8
Q ss_pred ceEEEEEecCChhhH--HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~--i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+. +.+.+++.++|-+++-..-......--+-..-+.|...++.||++..
T Consensus 82 vpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (306)
T 1o5k_A 82 IPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYN 145 (306)
T ss_dssp SCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred CeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 555555544455554 56788999999988875433222211111244678888999999975
No 126
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=68.95 E-value=8 Score=25.49 Aligned_cols=35 Identities=6% Similarity=0.026 Sum_probs=26.9
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
|++|++++.|+..+-.+.+..-.+.+. + .+++++.
T Consensus 1 mk~IllgvTGs~aa~k~~~l~~~L~~~-g--~~V~vv~ 35 (189)
T 2ejb_A 1 MQKIALCITGASGVIYGIKLLQVLEEL-D--FSVDLVI 35 (189)
T ss_dssp CCEEEEEECSSTTHHHHHHHHHHHHHT-T--CEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-C--CEEEEEE
Confidence 379999999998888888877777554 5 5776654
No 127
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=68.95 E-value=29 Score=24.77 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=39.7
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+++-..+...+..+ ++.+.+++.++|-+.+...-......--+=..-+.|...++.||++..-
T Consensus 93 vpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 157 (314)
T 3qze_A 93 IPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNV 157 (314)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred CcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 55555555444444 4557899999999988754332222111122456788889999999853
No 128
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=68.92 E-value=19 Score=22.66 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCc
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
+++.+.+.+.+.+.| +.++..-......+.+..... ++|.||+|+...+
T Consensus 15 ~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 63 (161)
T 3hly_A 15 DRLSQAIGRGLVKTG--VAVEMVDLRAVDPQELIEAVS--SARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEEETTTCCHHHHHHHHH--HCSEEEEECCBSS
T ss_pred HHHHHHHHHHHHhCC--CeEEEEECCCCCHHHHHHHHH--hCCEEEEEcCCcC
Confidence 344444455555566 666655444444455555454 7999999976544
No 129
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=68.83 E-value=31 Score=25.21 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNN 93 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (160)
....+.+.+++|+++|++.. .+|+++|=...- +...-+.+.+.+.+++++ .
T Consensus 163 T~~~~eRiar~AFe~A~~rr--kkVt~v~KaNvl--------------------------k~~~lf~~~~~eva~eyp-d 213 (358)
T 1a05_A 163 DEDEIRRIAHVAFRAAQGRR--KQLCSVDKANVL--------------------------ETTRLWREVVTEVARDYP-D 213 (358)
T ss_dssp EHHHHHHHHHHHHHHHHTTT--SEEEEEECTTTC--------------------------HHHHHHHHHHHHHGGGCT-T
T ss_pred cHHHHHHHHHHHHHHHHhcC--CeEEEEECCccc--------------------------ccchhHHHHHHHHHHHCC-C
Confidence 34668899999999999876 588887743222 112234444555556665 5
Q ss_pred ceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
+.++..... +.+-.++..=. ..|+||..
T Consensus 214 I~~~~~~vD-~~~mqlv~~P~--~FDVivt~ 241 (358)
T 1a05_A 214 VRLSHMYVD-NAAMQLIRAPA--QFDVLLTG 241 (358)
T ss_dssp SEEEEEEHH-HHHHHHHHCGG--GCSEEEEC
T ss_pred ceEEeeeHH-HHHHHHHhCCC--cccEEEec
Confidence 777765543 44445554444 88888875
No 130
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=68.76 E-value=34 Score=25.53 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
...+.+.+++|+++|+... .+|+++|= .+.. +...-+.+.+.+..++++ .+
T Consensus 206 r~~~eRIar~AFe~A~~rr--kkVT~v~K--aNVl------------------------k~sglf~~~~~eva~eYP-dV 256 (405)
T 3r8w_A 206 AHEIDRIARVAFETARKRR--GKLCSVDK--ANVL------------------------EASILWRKRVTALASEYP-DV 256 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEEC--TTTC------------------------HHHHHHHHHHHHHGGGST-TS
T ss_pred HHHHHHHHHHHHHHHHHcC--CeEEEEEC--chhh------------------------ccccHHHHHHHHHHhHCC-CC
Confidence 4568899999999998766 58888773 3322 112233444455555665 57
Q ss_pred eEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 95 ~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.++..... +.+-.++..= ..+|+||+.
T Consensus 257 ~~~~~~VD-~~amqLV~~P--~~FDViVt~ 283 (405)
T 3r8w_A 257 ELSHMYVD-NAAMQLVRDP--KQFDTIVTN 283 (405)
T ss_dssp EEEEEEHH-HHHHHHHHCG--GGCSEEEEC
T ss_pred eEEeeeHH-HHHHHHHhCh--hhCcEEeec
Confidence 77766653 4444454443 378988874
No 131
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=68.06 E-value=25 Score=23.84 Aligned_cols=61 Identities=5% Similarity=-0.024 Sum_probs=35.3
Q ss_pred HHHHHhcCCcceEEEEEecC--C---hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 84 EAVYRNFQNNIHVKRVVGCG--D---AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g--~---~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
.+.+++.| +++....... + ..+++++..++.++|++|+...++- +...++...+..++=++
T Consensus 65 ~~~A~~~g--Ip~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~I---------L~~~~l~~~~~~~iNiH 130 (229)
T 3auf_A 65 LERARRAG--VDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYMRL---------VRGPMLTAFPNRILNIH 130 (229)
T ss_dssp HHHHHHTT--CEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCCSC---------CCHHHHHHSTTCEEEEE
T ss_pred HHHHHHcC--CCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChhHh---------CCHHHHhhccCCEEEEc
Confidence 34556677 6655322211 1 1357888889999999999755322 12345555555555444
No 132
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=67.99 E-value=29 Score=24.55 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=38.7
Q ss_pred ceEEEEEecCChhhH--HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 94 IHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~--i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+++-..+...+..+. +.+.+++.++|-+.+...-......--+-..-..|...++.||++..-
T Consensus 86 vpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 150 (304)
T 3cpr_A 86 AKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDI 150 (304)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 555555544455554 568889999998888754322221111122346788889999999753
No 133
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=67.96 E-value=16 Score=25.81 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=25.8
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
.++||+|-++++.....++-.+.+- ...+ ++|.++-.-
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~--~~i~~Visn 124 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYRHRL-GELD--MEVVGIISN 124 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHHHHH-TSSC--CEEEEEEES
T ss_pred CCcEEEEEEeCCCcCHHHHHHHHHC-CCCC--eEEEEEEeC
Confidence 4678999999988888777777654 3334 566555443
No 134
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=67.76 E-value=23 Score=23.28 Aligned_cols=36 Identities=11% Similarity=-0.070 Sum_probs=28.1
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
+++|+|+++|..+|..++..+.+ .+ .++.++|+...
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~----~g--~~v~~~~v~~~ 41 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKK----LG--YNPHLITINFG 41 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHH----TT--EEEEEEEEECS
T ss_pred CCeEEEEEECcHHHHHHHHHHHH----cC--CCeEEEEEeCC
Confidence 57999999999999888766554 35 58888888754
No 135
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=67.55 E-value=25 Score=23.51 Aligned_cols=104 Identities=10% Similarity=0.042 Sum_probs=59.6
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
+||.|-++++.....++-.++.- ...+ .+|.+|-..++... ..+
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~~~~--~~I~~Vvs~~~~~~---------------------------------~~~ 44 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-PNSS--AQIDIVISNKAAVA---------------------------------GLD 44 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-TTCS--CEEEEEEESSTTCH---------------------------------HHH
T ss_pred CeEEEEEECCchHHHHHHHHHhc-CCCC--cEEEEEEeCCCChH---------------------------------HHH
Confidence 47889999988777777665543 2223 46555544432211 024
Q ss_pred HHHhcCCcceEEEEEec--CC---hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 86 VYRNFQNNIHVKRVVGC--GD---AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~--g~---~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+++.| +++...... .+ ..+++.+..++.++|++|+...++- +...++...+..++=+++
T Consensus 45 ~A~~~g--Ip~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~i---------l~~~~l~~~~~~~iNiHp 109 (209)
T 1meo_A 45 KAERAG--IPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRI---------LSGPFVQKWNGKMLNIHP 109 (209)
T ss_dssp HHHHTT--CCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCCSC---------CCHHHHHHTTTSEEEEES
T ss_pred HHHHcC--CCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchhhh---------CCHHHHhhhcCCEEEEcc
Confidence 456677 766532221 12 1357888888999999999755422 123455555555555543
No 136
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=67.48 E-value=29 Score=24.34 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=39.7
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+++-..+...+..+ ++.+.+++.++|-+.+...-......--+=..-+.|...++.||++..-
T Consensus 71 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3tak_A 71 IPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNV 135 (291)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 55555555444444 5567899999999988754322222111122456788899999999853
No 137
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=67.44 E-value=16 Score=21.36 Aligned_cols=68 Identities=4% Similarity=0.053 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHP 157 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~ 157 (160)
.++..+++.| .. ......+..+.+........+|+|++...- ....++ ...+.+-.. ..+||+++-..
T Consensus 20 ~l~~~L~~~g--~~--~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~-p~~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 20 IIKNTLSRLG--YE--DVLEAEHGVEAWEKLDANADTKVLITDWNM-PEMNGL---DLVKKVRSDSRFKEIPIIMITAE 90 (129)
T ss_dssp HHHHHHHHTT--CC--CEEEESSHHHHHHHHHHCTTCCEEEECSCC-SSSCHH---HHHHHHHTSTTCTTCCEEEEESC
T ss_pred HHHHHHHHcC--Cc--EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHH---HHHHHHHhcCCCCCCeEEEEeCC
Confidence 3444455556 32 223334555555544444579999997432 111111 233444432 35899988544
No 138
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=67.17 E-value=25 Score=25.80 Aligned_cols=80 Identities=8% Similarity=-0.073 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVN-SVMNRAEAVYRNFQN 92 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (160)
....+.+.+++|+++|++.+. .+|+++|=. +.. +... -+.+.+.+..++++
T Consensus 164 T~~~~eRIar~AFe~A~~r~~-kkVt~v~Ka--Nvl------------------------k~s~glf~~~~~eva~eyp- 215 (364)
T 3flk_A 164 TRRGVDRILKYAFDLAEKRER-KHVTSATKS--NGM------------------------AISMPYWDKRTEAMAAHYP- 215 (364)
T ss_dssp EHHHHHHHHHHHHHHHHHSSS-CEEEEEECT--TTS------------------------TTHHHHHHHHHHHHHTTCT-
T ss_pred CHHHHHHHHHHHHHHHHhcCC-CeEEEEECc--chh------------------------hhHHHHHHHHHHHHHHHCC-
Confidence 346788999999999998763 368888743 222 1111 23333444455554
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.+.++..... +.+-.++..= ...|+||+.
T Consensus 216 dv~~~~~~vD-~~am~lv~~P--~~FDVivt~ 244 (364)
T 3flk_A 216 HVSWDKQHID-ILCARFVLQP--ERFDVVVAS 244 (364)
T ss_dssp TCEEEEEEHH-HHHHHHHHCG--GGCSEEEEC
T ss_pred CceEEeeEHH-HHHHHHHhCc--ccCcEEEec
Confidence 5777766654 4444455443 478988875
No 139
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=66.99 E-value=27 Score=24.57 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=39.3
Q ss_pred cceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 93 NIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
++++-..+...+..+ ++.+.+++.++|-+.+...-......--+=..-+.|...++.||++..
T Consensus 71 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 135 (292)
T 3daq_A 71 RVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYN 135 (292)
T ss_dssp SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred CCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 366655555445544 455789999999988875432222211112244678888899999985
No 140
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=66.84 E-value=26 Score=24.80 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=38.1
Q ss_pred ceEEEEEecCChhhH--HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEec
Q 031383 94 IHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~--i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~ 155 (160)
+++-..+...+..+. +.+.+++.++|-+.+-..-......--+-..-+.|...++ .||++..
T Consensus 81 vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 81 IKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 555555544355554 4688899999998887543322221111124466888888 9999975
No 141
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=66.57 E-value=27 Score=24.68 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=38.5
Q ss_pred ceEEEEEecCChhhH--HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~--i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+. +.+.+++.++|-+.+...-......--+-..-+.|...++.||++..
T Consensus 70 vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (297)
T 2rfg_A 70 VPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYN 133 (297)
T ss_dssp SCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 555555544455554 46888999999998875433222211111234678888999999975
No 142
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=66.57 E-value=24 Score=25.13 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=38.2
Q ss_pred cceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 93 NIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
++++-..+.. +..+ ++.+.+++.++|-+++...-......--+=..-+.|...++.||++..
T Consensus 81 rvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (316)
T 3e96_A 81 RALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYF 144 (316)
T ss_dssp SSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred CCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3666555543 4444 455788999999999874332221111111244678888899999985
No 143
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=66.45 E-value=31 Score=24.29 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=39.8
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+++-..+...+..+ ++.+.+++.++|-+.+...-......--+=..-+.|...++.||++..-
T Consensus 77 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 141 (297)
T 3flu_A 77 VPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNV 141 (297)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 55655555444444 5567899999999988754322222111112457788899999999853
No 144
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=66.44 E-value=27 Score=23.62 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHH---HHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVIC---GTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~---~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.++....+++ ......+..++..+.+. +.....++|++|-. |.++..|-++.+.||+-++..
T Consensus 27 ~~~~i~~e~~--~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------------Ggta~~Lr~~~~iPVV~I~vs 91 (225)
T 2pju_A 27 LFRDISLEFD--HLANITPIQLGFEKAVTYIRKKLANERCDAIIAA------------GSNGAYLKSRLSVPVILIKPS 91 (225)
T ss_dssp HHHHHHTTTT--TTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred HHHHHHHhhC--CCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------------ChHHHHHHhhCCCCEEEecCC
Confidence 3344444444 34455555555544433 22333458855543 446677777788999988753
No 145
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=66.22 E-value=17 Score=21.09 Aligned_cols=67 Identities=4% Similarity=-0.096 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHP 157 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~ 157 (160)
+.+...+.+.| . .... . .-.++.++...+..+|+|++...-.+ ..++ ...+.+-.. ..+||+++-..
T Consensus 17 ~~l~~~L~~~g--~--~v~~-~-~~~~~a~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 17 ETFKELLEMLG--F--QADY-V-MSGTDALHAMSTRGYDAVFIDLNLPD-TSGL---ALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HHHHHHHHHTT--E--EEEE-E-SSHHHHHHHHHHSCCSEEEEESBCSS-SBHH---HHHHHHHHSCCSSCCEEEEEECC
T ss_pred HHHHHHHHHcC--C--CEEE-E-CCHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhhccCCCCEEEEECC
Confidence 34444555566 3 2222 2 33445556667788999999854221 1111 234455443 45899888543
No 146
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=65.97 E-value=7.7 Score=27.49 Aligned_cols=109 Identities=8% Similarity=0.013 Sum_probs=58.5
Q ss_pred CceEEEEEecCChH---HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEE---SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~---s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
+.+--|+.+.+.+. ...++++.++++...+ ++|.++-..... . +...
T Consensus 24 ~~~g~l~iiGGgedk~~~~~i~~~~v~lagg~~--~~I~~IptAs~~-------------~---------------~~~~ 73 (291)
T 3en0_A 24 SSQPAILIIGGAEDKVHGREILQTFWSRSGGND--AIIGIIPSASRE-------------P---------------LLIG 73 (291)
T ss_dssp CCSCCEEEECSSCCSSSCCHHHHHHHHHTTGGG--CEEEEECTTCSS-------------H---------------HHHH
T ss_pred CCCceEEEEECCCCccChHHHHHHHHHHcCCCC--CeEEEEeCCCCC-------------h---------------HHHH
Confidence 33445666666543 4578999999998654 455554221111 0 0122
Q ss_pred HHHHHHHHhcCCcc-eEEEEEecC---ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc
Q 031383 81 NRAEAVYRNFQNNI-HVKRVVGCG---DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH 146 (160)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~g---~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~ 146 (160)
+.+.+.+++.| . .++...... -....+.+..+ ++|.|+++.-....+-+.+.++-...++++
T Consensus 74 ~~~~~~f~~lG--~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~ 139 (291)
T 3en0_A 74 ERYQTIFSDMG--VKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCGLLADTPLMDRIRQ 139 (291)
T ss_dssp HHHHHHHHHHC--CSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcC--CCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHHHHHhCCHHHHHHH
Confidence 22334555567 5 444332211 22345666676 899999986555555555555544444443
No 147
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=65.95 E-value=13 Score=21.83 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCc
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
+.+.+++.+++.| ++++..... +...+. .. ++|++++|..-+.
T Consensus 19 l~~k~~~~~~~~g--i~~~i~a~~~~~~~~~----~~--~~Dvil~~pqv~~ 62 (106)
T 1e2b_A 19 LVSKMRAQAEKYE--VPVIIEAFPETLAGEK----GQ--NADVVLLGPQIAY 62 (106)
T ss_dssp HHHHHHHHHHHSC--CSEEEEEECSSSTTHH----HH--HCSEEEECTTSGG
T ss_pred HHHHHHHHHHHCC--CCeEEEEecHHHHHhh----cc--CCCEEEEccchhh
Confidence 3445666677788 776654333 233332 33 6899999865443
No 148
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=64.37 E-value=23 Score=25.23 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=39.3
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+ ++.+.+++.++|-+++...-......--+=..-+.|...++.||++..
T Consensus 94 vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 157 (315)
T 3na8_A 94 VPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYN 157 (315)
T ss_dssp SCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 55555554444444 555789999999999975433322221112244678888999999985
No 149
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=63.21 E-value=27 Score=24.48 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=36.5
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+++-..+...+..+ ++.+.+++.++|-+++...-......--+-..-+.|...++.||++..
T Consensus 71 ~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 134 (291)
T 3a5f_A 71 IPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYN 134 (291)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEE
T ss_pred CcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 55555554445454 456788999999988875433222111011122456778889999975
No 150
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=62.66 E-value=21 Score=21.05 Aligned_cols=47 Identities=9% Similarity=-0.032 Sum_probs=26.8
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh---cCCCCEEEecC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK---HVKCPVVIVKH 156 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~---~~~~pVlvv~~ 156 (160)
.++.++..+...+|+|++...-. ...++ ...+.|-. ...+||+++-.
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDLNLP-DQDGV---SLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCS-SSCHH---HHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC-CCCHH---HHHHHHHhCcccCCCCEEEEec
Confidence 44555666778999999985421 11111 13344443 23588888754
No 151
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=61.97 E-value=13 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=27.5
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
...++|++.+.|+-.+-.+++..-.+.+..+ .+++++.
T Consensus 17 l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g--~~V~vv~ 54 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALKLPLLVSKLLDIPG--LEVAVVT 54 (206)
T ss_dssp CSSEEEEEEECSSGGGGTHHHHHHHHC---C--EEEEEEE
T ss_pred cCCCEEEEEEeChHHHHHHHHHHHHHhcccC--CEEEEEE
Confidence 3458999999999888888888877754245 5776664
No 152
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=61.73 E-value=30 Score=25.14 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=37.2
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhHH-HhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSDY-CAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~~-ll~~~~~pVlvv~ 155 (160)
+.+.| +++..... + ++....+..++|.|++|+.. .+.+... .|+..-. +.++-.+|++++-
T Consensus 204 L~~~G--I~vtlI~D--s---a~~~~M~~~~Vd~VivGAd~V~aNG~v~NK-iGT~~lAl~Ak~~~vPfyV~a 268 (347)
T 1t9k_A 204 LMKDG--IEVYVITD--N---MAGWLMKRGLIDAVVVGADRIALNGDTANK-IGTYSLAVLAKRNNIPFYVAA 268 (347)
T ss_dssp HHTTT--CEEEEECG--G---GHHHHHHTTCCSEEEECCSEEETTSCEEEE-TTHHHHHHHHHHTTCCEEEEC
T ss_pred HHhCC--CCEEEEeh--h---HHHHHhhcCCCCEEEECccEEecCCCEEec-ccHHHHHHHHHHcCCCEEEec
Confidence 34566 76665542 2 33444555579999999764 3334333 4654444 5566679999984
No 153
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=61.38 E-value=31 Score=24.61 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=39.4
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+++-..+...+..+ ++.+.+++.++|-+.+...-......--+=..-+.|...++.||++..-
T Consensus 92 vpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 156 (315)
T 3si9_A 92 VPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNI 156 (315)
T ss_dssp SCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeC
Confidence 55555554444444 5567899999999988754322222111122446788889999999853
No 154
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=61.26 E-value=29 Score=25.60 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=37.2
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhHH-HhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSDY-CAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~~-ll~~~~~pVlvv~ 155 (160)
+.+.| +++..... + ++....+..++|.||+|+.. .+.+... .|+..-. +.++-++|++|+-
T Consensus 229 L~~~G--IpvtlI~D--s---a~~~~M~~~~Vd~ViVGAD~V~aNG~v~NK-iGTy~lAl~Ak~~~vPfyV~a 293 (374)
T 2yvk_A 229 LMQGG--IDVTLITD--S---MAAHTMKEKQISAVIVGADRIAKNGDTANK-IGTYGLAILANAFDIPFFVAA 293 (374)
T ss_dssp HHTTT--CEEEEECG--G---GHHHHHHHTTCCEEEECCSEEETTCCEEEE-TTHHHHHHHHHHTTCCEEEEC
T ss_pred HHHcC--CCEEEEeh--h---HHHHHhhhcCCCEEEECccEEecCCCEEec-ccHHHHHHHHHHcCCCEEEec
Confidence 44566 76665543 2 33344555679999999764 3334333 4654444 5666679999974
No 155
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=61.18 E-value=45 Score=24.32 Aligned_cols=81 Identities=9% Similarity=0.070 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY-RNFQN 92 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 92 (160)
....+.+.+++|+++|.+.+. -+|+++|=...-.. ..--+.+.+.+.. ++++
T Consensus 155 T~~~~eRiar~AF~~A~~r~r-kkVt~v~KaNvlk~-------------------------sdglf~~~~~eva~~eyp- 207 (349)
T 3blx_A 155 TRPKTERIARFAFDFAKKYNR-KSVTAVHKANIMKL-------------------------GDGLFRNIITEIGQKEYP- 207 (349)
T ss_dssp EHHHHHHHHHHHHHHHHHTTC-CEEEEEECTTTSTT-------------------------HHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHHHHHHHhcCC-CcEEEEeCCccchh-------------------------hHHHHHHHHHHHHHhhCC-
Confidence 346788999999999998743 47888874433221 0111333444444 4554
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.+.++..... +.+-.++..= ...|++|..
T Consensus 208 ~i~~~~~~vD-~~~~qlv~~P--~~FDVivt~ 236 (349)
T 3blx_A 208 DIDVSSIIVD-NASMQAVAKP--HQFDVLVTP 236 (349)
T ss_dssp TSEEEEEEHH-HHHHHHHHCG--GGCSEEEEC
T ss_pred CeeEEEeeHH-HHHHHHhhCc--ccccEEEEC
Confidence 5777766653 4444444443 378888875
No 156
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=60.91 E-value=12 Score=24.46 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=29.1
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
++||++.+.|+-.+-.+++..-.+.+. + .+++++.--
T Consensus 2 ~k~IllgvTGs~aa~k~~~l~~~L~~~-g--~~V~vv~T~ 38 (181)
T 1g63_A 2 YGKLLICATASINVININHYIVELKQH-F--DEVNILFSP 38 (181)
T ss_dssp CCCEEEEECSCGGGGGHHHHHHHHTTT-S--SCEEEEECG
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-C--CEEEEEEch
Confidence 489999999999888888888888554 5 677776543
No 157
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=60.85 E-value=22 Score=23.79 Aligned_cols=66 Identities=5% Similarity=-0.067 Sum_probs=40.8
Q ss_pred HHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEE--eecCCcccceeeccchhHHHhhcC---CCCEEEe
Q 031383 83 AEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVM--GSHGYGFIKRALLGSVSDYCAKHV---KCPVVIV 154 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvi--g~~~~~~~~~~~~gs~~~~ll~~~---~~pVlvv 154 (160)
+...++..| ++..... .-+.+.+++.+.++++|+|.+ ...-..... .+..+.+.+-... ++||++=
T Consensus 112 v~~~l~~~G----~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 112 VTTMLGANG----FQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHHHHHHTS----CEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHHHHHHCC----CeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEE
Confidence 445566677 5555443 368999999999999999999 543222221 1233445554443 3677664
No 158
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=60.82 E-value=41 Score=23.67 Aligned_cols=63 Identities=8% Similarity=-0.004 Sum_probs=39.7
Q ss_pred cceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcc-cceeeccchhHHHhhcC---CCCEEEec
Q 031383 93 NIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGF-IKRALLGSVSDYCAKHV---KCPVVIVK 155 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~-~~~~~~gs~~~~ll~~~---~~pVlvv~ 155 (160)
++++-..+...+..+ ++.+.+++.++|-+++...-... ...--+=..-+.|...+ +.||++..
T Consensus 72 r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn 140 (294)
T 3b4u_A 72 PSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYN 140 (294)
T ss_dssp GGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred CCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 466666665545555 45688899999999887543322 11111112346788888 89999975
No 159
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=59.86 E-value=38 Score=23.09 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=27.6
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
.+|+|+++|..+|..++..+.+.. . ++.++|+-...
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~---~---~v~vv~idtg~ 81 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR---P---DIPVILTDTGY 81 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS---T---TCEEEECCCSC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC---C---CCeEEEecCCC
Confidence 489999999999998888887773 2 56777776543
No 160
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=59.77 E-value=41 Score=23.37 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=36.0
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+.|.+.+++.++|+|+.-....+...+...+..+....+...+|++..
T Consensus 137 ~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 137 ADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 3456678888999999997555566667766777777777777777665
No 161
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=58.96 E-value=30 Score=25.60 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---CcccceeeccchhHH-HhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSVSDY-CAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~~~~-ll~~~~~pVlvv~ 155 (160)
+.+.| +++..... + .+....+..++|.||+|+.. .+.+.. ..|+..-. +.++-.+|++|+-
T Consensus 233 L~~~G--IpvtlI~D--s---a~~~~M~~~~Vd~ViVGAD~V~aNG~v~N-KiGTy~lAl~Ak~~~vPfyV~a 297 (383)
T 2a0u_A 233 CVQED--IPCTLICD--G---AASSLMLNRKIDAVVVGADRICQNGDTAN-KIGTYNLAVSAKFHGVKLYVAA 297 (383)
T ss_dssp HHHTT--CCEEEECG--G---GHHHHHHHSCCCEEEECCSEECTTCCEEE-ETTHHHHHHHHHHTTCCEEEEC
T ss_pred HHHcC--CCEEEEeh--h---HHHHHhhcCCCCEEEECccEEecCCCEee-cccHHHHHHHHHHcCCCEEEeC
Confidence 34456 77765543 2 33344555679999999764 333433 34654444 5566679999984
No 162
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=57.91 E-value=39 Score=22.58 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=51.6
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
.+||.|-+.++.....++-.++.- ...+ ++|.+|-...+... . .
T Consensus 7 ~~ri~vl~SG~gsnl~all~~~~~-~~l~--~~I~~Visn~~~a~------------------------~---------l 50 (209)
T 4ds3_A 7 RNRVVIFISGGGSNMEALIRAAQA-PGFP--AEIVAVFSDKAEAG------------------------G---------L 50 (209)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHTS-TTCS--EEEEEEEESCTTCT------------------------H---------H
T ss_pred CccEEEEEECCcHHHHHHHHHHHc-CCCC--cEEEEEEECCcccH------------------------H---------H
Confidence 368999999998777777666642 2222 45554443322211 0 1
Q ss_pred HHHHhcCCcceEEEEEec--CC---hhhHHHHHhhhhCCCEEEEeecC
Q 031383 85 AVYRNFQNNIHVKRVVGC--GD---AKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~--g~---~~~~i~~~a~~~~~dllvig~~~ 127 (160)
+.+++.| +++...... .+ ..+++.+..++.++|++|+....
T Consensus 51 ~~A~~~g--Ip~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 51 AKAEAAG--IATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp HHHHHTT--CCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred HHHHHcC--CCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 4456677 766543221 12 23688899999999999997554
No 163
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=57.75 E-value=28 Score=20.91 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=27.8
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKHP 157 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~~ 157 (160)
-.++.++..+...+|+|++...-.. ..+ -...+.+-...+ +||+++-..
T Consensus 49 ~~~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 49 DGAAALELIKAHLPDVALLDYRMPG-MDG---AQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp SHHHHHHHHHHHCCSEEEEETTCSS-SCH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCeEEEEEcc
Confidence 3344555666779999999854211 111 123344544444 788887544
No 164
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=57.46 E-value=18 Score=24.73 Aligned_cols=48 Identities=8% Similarity=0.003 Sum_probs=29.9
Q ss_pred HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCCC
Q 031383 108 VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHPE 158 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~~ 158 (160)
+.++.+.+.+.|.|.+|.+..-..+.. -.+.+.|-+ .+.||++.|...
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~~--~~~v~~ik~-~~~Piil~p~~~ 74 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDNV--IHLMSKIRR-YPLPLVLEISNI 74 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHHH--HHHHHHHTT-SCSCEEEECCCS
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHHH--HHHHHHhcC-cCCCEEEecCCH
Confidence 455556678999999997532222221 224444444 789999988643
No 165
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=56.94 E-value=41 Score=22.45 Aligned_cols=62 Identities=5% Similarity=-0.113 Sum_probs=35.5
Q ss_pred HHHHHhcCCcceEEEEEecC--C---hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 84 EAVYRNFQNNIHVKRVVGCG--D---AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g--~---~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+.+++.| +++....... + ...++++..++.++|++|+...++- +...++...+..++=+++
T Consensus 46 ~~~A~~~g--Ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~~i---------l~~~~l~~~~~~~iNiHp 112 (212)
T 3av3_A 46 IERAAREN--VPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYMRL---------IGPTLLSAYEGKIVNIHP 112 (212)
T ss_dssp HHHHHHTT--CCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSC---------CCHHHHHHTTTCEEEEES
T ss_pred HHHHHHcC--CCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhhhh---------CCHHHHhhhcCCEEEEec
Confidence 34556677 7665322211 1 1347888889999999999754322 123455555555555543
No 166
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=56.10 E-value=21 Score=23.14 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=27.2
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
.+||++.+.|+..+-.+++..-.+.+ .+ .+++++.
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~L~~-~g--~~V~vv~ 39 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIELKS-KF--DEVNVIA 39 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHTT-TC--SEEEEEE
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHH-CC--CEEEEEE
Confidence 38999999999888888887777754 45 6776655
No 167
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=55.81 E-value=56 Score=23.69 Aligned_cols=79 Identities=9% Similarity=-0.021 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVN-SVMNRAEAVYRNFQN 92 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (160)
....+.+.+++|+++|++.. .+|+++|=. +.. +... -+.+.+.+..++++
T Consensus 152 T~~~~eRiar~AFe~A~~rr--kkVt~v~Ka--Nvl------------------------k~s~glf~~~~~eva~eyp- 202 (337)
T 1w0d_A 152 TAFGVRRVVADAFERARRRR--KHLTLVHKT--NVL------------------------TFAGGLWLRTVDEVGECYP- 202 (337)
T ss_dssp EHHHHHHHHHHHHHHHHHTT--SEEEEEECT--TTS------------------------HHHHHHHHHHHHHHHTTCT-
T ss_pred cHHHHHHHHHHHHHHHHHcC--CeEEEEECC--ccc------------------------hhhhHHHHHHHHHHHHHCC-
Confidence 34668899999999999886 588888733 322 2122 23444455555665
Q ss_pred cceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.+.++..... +.+-.++..=. ..|++|..
T Consensus 203 ~i~~~~~~vD-~~~mqlv~~P~--~FDVivt~ 231 (337)
T 1w0d_A 203 DVEVAYQHVD-AATIHMITDPG--RFDVIVTD 231 (337)
T ss_dssp TSEEEEEEHH-HHHHHHHHCGG--GCSEEEEC
T ss_pred ceEEEEEEHH-HHHHHHhhCcc--cccEEEEC
Confidence 5777766653 44444544433 78988875
No 168
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=55.18 E-value=15 Score=25.33 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=31.1
Q ss_pred HHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 110 CGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 110 ~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
++.+++.++|++|+.+...... -.+-++.++.....|.+|+.+.
T Consensus 57 ~~~~~~~~pDfvI~isPN~a~P----GP~~ARE~l~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 57 LDIAEDFEPDFIVYGGPNPAAP----GPSKAREMLADSEYPAVIIGDA 100 (283)
T ss_dssp HHHHHHHCCSEEEEECSCTTSH----HHHHHHHHHHTSSSCEEEEEEG
T ss_pred hhhhhhcCCCEEEEECCCCCCC----CchHHHHHHHhCCCCEEEEcCC
Confidence 3445788999999986643321 2335677999999999998654
No 169
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=55.04 E-value=22 Score=23.18 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=7.9
Q ss_pred HHHHHhhhhCCCEEEEe
Q 031383 108 VICGTVEKLEADTLVMG 124 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig 124 (160)
.+++.+.+.++|+||+.
T Consensus 23 ~~~~~~~~~~~D~vi~~ 39 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALI 39 (228)
T ss_dssp HHHTHHHHHTCSEEEEE
T ss_pred HHHHHHhhcCCCEEEEC
Confidence 33444444455555554
No 170
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=54.23 E-value=58 Score=25.00 Aligned_cols=79 Identities=8% Similarity=0.078 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCc
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVN-SVMNRAEAVYRNFQNN 93 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 93 (160)
...+.+.+++|+++|++.+. -+|+++|=...-.. .+ -+.+.+.+..++++ .
T Consensus 164 r~~ieRIar~AFe~A~~r~r-kkVT~V~KaNVlk~--------------------------sdGlfr~v~~eVa~eYP-d 215 (496)
T 2d1c_A 164 WKGSEKIVRFAFELARAEGR-KKVHCATKSNIMKL--------------------------AEGTLKRAFEQVAQEYP-D 215 (496)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CEEEEEECTTTCTT--------------------------HHHHHHHHHHHHHTTCT-T
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcEEEEECCCchhh--------------------------HHHHHHHHHHHHHHHCC-C
Confidence 36788999999999998742 47888874433321 11 12333344444554 5
Q ss_pred ceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
+.++..... +.+-.++..= ...|++|..
T Consensus 216 I~~e~~~VD-~~amqLV~~P--~~FDVIVt~ 243 (496)
T 2d1c_A 216 IEAVHIIVD-NAAHQLVKRP--EQFEVIVTT 243 (496)
T ss_dssp SEEEEEEHH-HHHHHHHHCG--GGCSEEEEC
T ss_pred ceEEEEeHH-HHHHHHhhCc--CcceEEEEC
Confidence 777766654 3444444443 378888875
No 171
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=53.95 E-value=18 Score=24.62 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=29.1
Q ss_pred HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 108 VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
..++.+.+.+.|.|.+|.+..-..+.. ..+.+.+-+ ++.|+++.|..
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~~--~~~v~~ik~-~~~Pvvlfp~~ 68 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDNV--LRMMSKVRR-FLVPCVLEVSA 68 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHHH--HHHHHHHTT-SSSCEEEECSC
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHHH--HHHHHHhhc-cCCCEEEeCCC
Confidence 345555677999999997532222221 224444444 78999998865
No 172
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=53.93 E-value=15 Score=24.50 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=28.6
Q ss_pred CCCCceEEEEEecCChHHH-HHHHHHHHhcCCCCCCCeEEEEEE
Q 031383 1 MNTNERRVVVAVDESEESM-HALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~-~al~~a~~~a~~~~~~a~l~~l~v 43 (160)
|....++|++++.|+-..- .+++..-.+.+. + .+++++.-
T Consensus 3 m~l~~k~I~lgiTGs~aa~~k~~~ll~~L~~~-g--~eV~vv~T 43 (201)
T 3lqk_A 3 MNFAGKHVGFGLTGSHCTYHEVLPQMERLVEL-G--AKVTPFVT 43 (201)
T ss_dssp CCCTTCEEEEECCSCGGGGGGTHHHHHHHHHT-T--CEEEEECS
T ss_pred CCcCCCEEEEEEEChHHHHHHHHHHHHHHhhC-C--CEEEEEEC
Confidence 5556689999999997666 677777766443 5 57776653
No 173
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=53.81 E-value=52 Score=23.31 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=39.4
Q ss_pred cceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCC---cccceeeccchhHHHhhcCCCCEEEecC
Q 031383 93 NIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGY---GFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~---~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
++++-..+...+..+ ++.+.+++.++|-+.+-..-. .....--+=..-+.|...++.||++...
T Consensus 77 rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~ 145 (309)
T 3fkr_A 77 RVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDA 145 (309)
T ss_dssp SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 366655555444444 556789999999998875322 1111111112446788889999999854
No 174
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=53.61 E-value=31 Score=20.08 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh-------hCCCEEEEeecCCcccceeeccchhHHHhhc---CCC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK-------LEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKC 149 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~-------~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~ 149 (160)
.+.+...+.+.| ..+... ...+. .+.++.... ..+|++++...-.. ..++ ...+.+-.. ..+
T Consensus 15 ~~~l~~~L~~~~--~~~~v~-~~~~~-~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~---~~~~~l~~~~~~~~~ 86 (140)
T 1k68_A 15 IRLIQEALANST--VPHEVV-TVRDG-MEAMAYLRQEGEYANASRPDLILLXLNLPK-KDGR---EVLAEIKSDPTLKRI 86 (140)
T ss_dssp HHHHHHHHHTCS--SCCEEE-EECSH-HHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHH---HHHHHHHHSTTGGGS
T ss_pred HHHHHHHHHhcC--CCceEE-EECCH-HHHHHHHHcccccccCCCCcEEEEecCCCc-ccHH---HHHHHHHcCcccccc
Confidence 344455556666 322222 22233 344444444 68999999854221 1111 234455544 358
Q ss_pred CEEEecCC
Q 031383 150 PVVIVKHP 157 (160)
Q Consensus 150 pVlvv~~~ 157 (160)
||+++-..
T Consensus 87 pii~ls~~ 94 (140)
T 1k68_A 87 PVVVLSTS 94 (140)
T ss_dssp CEEEEESC
T ss_pred cEEEEecC
Confidence 99888543
No 175
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=53.55 E-value=36 Score=20.89 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=28.5
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
-..+.++......+|+|++...-.+ ..+ -...+.|-...++|++++-.
T Consensus 59 ~~~~al~~l~~~~~dlvilD~~l~~-~~g---~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 59 DGLEAVEKAIELKPDVITMDIEMPN-LNG---IEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp SHHHHHHHHHHHCCSEEEECSSCSS-SCH---HHHHHHHHHHSCCEEEEEES
T ss_pred CHHHHHHHhccCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCceEEEEec
Confidence 3344455666678999999854211 111 12445566666788888743
No 176
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=53.33 E-value=16 Score=26.50 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=32.5
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC-Ccccce-eeccchhHHHhhcCCCCEEEecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG-YGFIKR-ALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~-~~~~~~-~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+..+.++.++ ++|+||+|... .+.+-- ++...+.+ -++++++|++.|.+
T Consensus 166 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~-Ai~~s~A~kV~v~N 217 (332)
T 2ppv_A 166 EPMNEAIEALE--QADLIVLGPGSLYTSVISNLCVKGISE-ALLRTSAPKLYVSN 217 (332)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHH-HHHHCCSCEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHH-HHHhCCCCEEEEcC
Confidence 45567888887 89999999543 222222 33333444 46888999988865
No 177
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=53.22 E-value=47 Score=22.08 Aligned_cols=78 Identities=12% Similarity=0.059 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEE-EEecCChhhHHHHHhhhhCCCEEEEeec-CCcccceeeccchhHHHhhcCCCCE
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKR-VVGCGDAKDVICGTVEKLEADTLVMGSH-GYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~i~~~a~~~~~dllvig~~-~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
+..++.++.+.+.+++.+ ++.-. -...|..+...++.. .+.++|+++.+ +-.....+-+..-..+-|.+...+|
T Consensus 26 eNT~~tl~la~era~e~~--Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V 101 (201)
T 1vp8_A 26 ENTEETLRLAVERAKELG--IKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKI 101 (201)
T ss_dssp GGHHHHHHHHHHHHHHHT--CCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEE
T ss_pred ccHHHHHHHHHHHHHHcC--CCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEE
Confidence 566777777778888777 54322 233355666666655 36889999854 3333334566777788888888888
Q ss_pred EEec
Q 031383 152 VIVK 155 (160)
Q Consensus 152 lvv~ 155 (160)
+.-.
T Consensus 102 ~t~t 105 (201)
T 1vp8_A 102 VRQS 105 (201)
T ss_dssp EECC
T ss_pred EEEe
Confidence 7543
No 178
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=52.85 E-value=63 Score=23.39 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNN 93 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (160)
....+.+.+++|+++|++.+. -+|+++|=...-.. ..--+.+.+.+..++++ .
T Consensus 142 T~~~~eRiar~AF~~A~~r~r-kkvt~v~KaNvlk~-------------------------t~glf~~~~~eva~eyp-~ 194 (333)
T 1x0l_A 142 SKKASERIGRAALRIAEGRPR-KTLHIAHKANVLPL-------------------------TQGLFLDTVKEVAKDFP-L 194 (333)
T ss_dssp EHHHHHHHHHHHHHHHHTSTT-CEEEEEECTTTCTT-------------------------HHHHHHHHHHHHHTTCT-T
T ss_pred cHHHHHHHHHHHHHHHHhcCC-CeEEEEecCccchh-------------------------hhHHHHHHHHHHHHHCC-C
Confidence 346688999999999998842 47888874332211 11123334444555565 5
Q ss_pred ceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
+.++..... +..-.++..=. ..|++|..
T Consensus 195 I~~~~~~vD-~~~m~lv~~P~--~FDVivt~ 222 (333)
T 1x0l_A 195 VNVQDIIVD-NCAMQLVMRPE--RFDVIVTT 222 (333)
T ss_dssp SEEEEEEHH-HHHHHHHHCGG--GCSEEEEC
T ss_pred ceEEEEEHH-HHHHHHhhCcc--cceEEEEc
Confidence 777766654 34444444433 78888874
No 179
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=51.02 E-value=33 Score=19.64 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=35.2
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+...+++.| ..+. ...+. ++.++..+...+|++++...- .+..++ ...+.+-...++||+++-.
T Consensus 18 l~~~L~~~g--~~v~---~~~~~-~~al~~~~~~~~dlii~D~~~-p~~~g~---~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 18 LEFNLRKEG--YEVH---CAHDG-NEAVEMVEELQPDLILLDIML-PNKDGV---EVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHHHHHTT--CEEE---EESSH-HHHHHHHHTTCCSEEEEETTS-TTTHHH---HHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHhCC--EEEE---EeCCH-HHHHHHHhhCCCCEEEEeCCC-CCCCHH---HHHHHHHhcCCCCEEEEEC
Confidence 344455556 4332 22344 445566677899999998542 111111 2345555555789988743
No 180
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=50.85 E-value=20 Score=24.53 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=29.5
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.++++...+.++|+|.+|.+.....+.. -...+.+-+ .+.|+++.+-
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~~--~~~v~~ir~-~~~Pivl~~y 69 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEKA--RTLIEKVSQ-YGLPIVVEPS 69 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHHH--HHHHHHHTT-SCCCEEECCS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHH--HHHHHHhcC-CCCCEEEecC
Confidence 4567777888999999996422222222 123444433 6799998764
No 181
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=50.75 E-value=11 Score=24.99 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=35.3
Q ss_pred HhcCCcceEEEEEecCChhhHHHHHhhhhC--CCEEEEeecC---CcccceeeccchhHH-HhhcCCCCEEEec
Q 031383 88 RNFQNNIHVKRVVGCGDAKDVICGTVEKLE--ADTLVMGSHG---YGFIKRALLGSVSDY-CAKHVKCPVVIVK 155 (160)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~--~dllvig~~~---~~~~~~~~~gs~~~~-ll~~~~~pVlvv~ 155 (160)
.+.| ++++.... + ++...+++.+ +|++++|++. .+.+.. ..|+..-. +.++..+|++++-
T Consensus 27 ~~~g--I~vtlI~D--s---a~~~~m~~~~~~Vd~VivGAd~v~~nG~v~n-kiGT~~~Al~Ak~~~vPf~V~a 92 (191)
T 1w2w_B 27 VYDK--IPSTLITD--S---SIAYRIRTSPIPIKAAFVGADRIVRNGDTAN-KIGTLQLAVICKQFGIKFFVVA 92 (191)
T ss_dssp HHHT--CCBEEBCG--G---GHHHHHHHCSSCEEEEEECCSEECTTSCEEE-ETTHHHHHHHHHHHTCEEEEEC
T ss_pred HHcC--CCEEEEec--h---HHHHHHHhCCCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEec
Confidence 3456 66655443 2 3334444445 9999999864 333433 34664444 4556679999974
No 182
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=50.74 E-value=38 Score=20.28 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=28.3
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
-.++.++......+|+|++...-.. ..++ ...+.|-... .+||+++-..
T Consensus 54 ~~~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 54 NGQEAIQLLEKESVDIAILDVEMPV-KTGL---EVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp SHHHHHHHHTTSCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred CHHHHHHHhhccCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEeCC
Confidence 3445556667788999999854221 1111 2344454444 4888887544
No 183
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=49.68 E-value=35 Score=19.61 Aligned_cols=65 Identities=9% Similarity=0.159 Sum_probs=34.0
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCC
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHP 157 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~ 157 (160)
++..+++.| ..+ . ...+. .+.++..+...+|++++...- .+..++ ...+.+-.. ..+||+++-..
T Consensus 18 l~~~l~~~g--~~v--~-~~~~~-~~al~~l~~~~~dlvllD~~~-p~~~g~---~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 18 VSFNLKKEG--YEV--I-EAENG-QIALEKLSEFTPDLIVLXIMM-PVMDGF---TVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp HHHHHHHTT--CEE--E-EESSH-HHHHHHHTTBCCSEEEECSCC-SSSCHH---HHHHHHHTSTTTTTSCEEEEESC
T ss_pred HHHHHHHCC--cEE--E-EeCCH-HHHHHHHHhcCCCEEEEeccC-CCCcHH---HHHHHHHhcccccCCCEEEEecC
Confidence 344455556 332 2 22344 444556677899999997431 211111 133444333 35899888543
No 184
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=49.61 E-value=37 Score=19.83 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCc----ccceeeccchhHHHhhcC-CCCEEEec
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG----FIKRALLGSVSDYCAKHV-KCPVVIVK 155 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~----~~~~~~~gs~~~~ll~~~-~~pVlvv~ 155 (160)
+.+...+.+.| ..+. ...+ ..+.++......+|++++...-.. ...++ ...+.+-+.. .+||+++-
T Consensus 17 ~~l~~~L~~~g--~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~ls 87 (140)
T 2qr3_A 17 TAVQLLLKNHF--SKVI---TLSS-PVSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLFT 87 (140)
T ss_dssp HHHHHHHTTTS--SEEE---EECC-HHHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhCC--cEEE---EeCC-HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEEE
Confidence 34444555556 4332 2223 355556666778999999854220 11111 2334454444 48998874
No 185
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=49.60 E-value=32 Score=23.67 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEee
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~ 125 (160)
..++++...+.+ ..+...+..| +. +. +..+.+.++|.+|+|+
T Consensus 182 I~~lr~~~~~~~--~~~~I~VDGGI~~-~t-i~~~~~aGAD~~V~GS 224 (246)
T 3inp_A 182 AKEISKWISSTD--RDILLEIDGGVNP-YN-IAEIAVCGVNAFVAGS 224 (246)
T ss_dssp HHHHHHHHHHHT--SCCEEEEESSCCT-TT-HHHHHTTTCCEEEESH
T ss_pred HHHHHHHHHhcC--CCeeEEEECCcCH-HH-HHHHHHcCCCEEEEeh
Confidence 444555555556 5666667766 43 33 4455566999999995
No 186
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=49.24 E-value=62 Score=22.26 Aligned_cols=71 Identities=13% Similarity=-0.034 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+...+...+++.| ..+......++... .+++.....++|-||+.......... . -..+....+||+++-.
T Consensus 20 ~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~-~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 20 DRDIFVKKAESLG--AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSN-----V-VKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHTS--CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHH-----H-HHHHHTTTCEEEEESS
T ss_pred HHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH-----H-HHHHHHCCCeEEEECC
Confidence 4455556666677 65555544444433 45666667799999987554332211 1 2345667899998854
Q ss_pred C
Q 031383 157 P 157 (160)
Q Consensus 157 ~ 157 (160)
.
T Consensus 92 ~ 92 (313)
T 3m9w_A 92 M 92 (313)
T ss_dssp C
T ss_pred c
Confidence 3
No 187
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=49.18 E-value=16 Score=26.50 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=32.2
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC-Cccc-ceeeccchhHHHhhcCCCCEEEecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG-YGFI-KRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~-~~~~-~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+..+.++.++ ++|+||+|... .+.+ ..++...+.+. ++++++|++.|.+
T Consensus 177 ~a~p~al~AI~--~AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~N 228 (341)
T 2p0y_A 177 QAVQPVIDAIM--AADQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICN 228 (341)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeC
Confidence 45566777777 89999999543 2222 22333334444 6788899988865
No 188
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=48.15 E-value=17 Score=26.19 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=33.4
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC-Cccc-ceeeccchhHHHhhcCCCCEEEecCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG-YGFI-KRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~-~~~~-~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.+..+.++.++ ++|+||+|... -+.+ ..++...+.+. ++++++|++.|.+-
T Consensus 167 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~Nl 219 (323)
T 2o2z_A 167 KPLREGLEAIR--KADVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICNV 219 (323)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECCS
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCC
Confidence 45567888887 89999999543 2222 22334445454 67889999888653
No 189
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=47.96 E-value=51 Score=20.96 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=23.9
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhh----hCCCEEEEe
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~----~~~dllvig 124 (160)
+...+++.| ..+......+|-.+.|.+..++ .++|+||+.
T Consensus 36 l~~~L~~~G--~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 36 LHELLKEAG--HKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHT--CEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHCC--CeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 344555677 6666655556555555544333 379999884
No 190
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=47.91 E-value=63 Score=21.96 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEecC--Ch--hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCE
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCG--DA--KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~--~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
...+...+.+.+++.| ..+......+ +. ....++.....++|-||+.......+.. ..+.+ . ..+||
T Consensus 20 ~~~~~~g~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~-----~~~~~-~-~~iPv 90 (304)
T 3o1i_D 20 WLSVNYGMVSEAEKQG--VNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH-----NLKSW-V-GNTPV 90 (304)
T ss_dssp HHHHHHHHHHHHHHHT--CEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT-----THHHH-T-TTSCE
T ss_pred HHHHHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH-----HHHHH-c-CCCCE
Confidence 3445555666666677 6666555444 43 3345666667899999987554432222 23333 4 78999
Q ss_pred EEec
Q 031383 152 VIVK 155 (160)
Q Consensus 152 lvv~ 155 (160)
+++-
T Consensus 91 V~~~ 94 (304)
T 3o1i_D 91 FATV 94 (304)
T ss_dssp EECS
T ss_pred EEec
Confidence 9983
No 191
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=47.81 E-value=14 Score=26.33 Aligned_cols=12 Identities=17% Similarity=0.005 Sum_probs=9.2
Q ss_pred CeEEEEEEeCCC
Q 031383 36 NTLVLLYVKPPL 47 (160)
Q Consensus 36 a~l~~l~v~~~~ 47 (160)
....++|+.+..
T Consensus 17 ~~mrilh~SD~H 28 (336)
T 2q8u_A 17 KELKILHTSDWH 28 (336)
T ss_dssp CEEEEEEEECCC
T ss_pred CceEEEEECccc
Confidence 477888888765
No 192
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=47.53 E-value=39 Score=19.48 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEee
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~ 125 (160)
.++++.+++. ..+-..+... ..++.-+.+++..++.++++--
T Consensus 41 sieelvkkyn--ativvvvvddkewaekairfvkslgaqvliiiy 83 (134)
T 2l69_A 41 SIEELVKKYN--ATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIY 83 (134)
T ss_dssp HHHHHTTCCC--CEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred HHHHHHHHhC--CeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEE
Confidence 3445555666 5555555544 5677788899999998888753
No 193
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=47.05 E-value=53 Score=20.93 Aligned_cols=41 Identities=12% Similarity=-0.043 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHh----hhhCCCEEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTV----EKLEADTLVMG 124 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a----~~~~~dllvig 124 (160)
.+...+.+.| ..+......+|-.+.|.+.. ...++|+||..
T Consensus 44 ~L~~~L~~~G--~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 44 IIKQLLIENG--HKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHTT--CEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHCC--CEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 3455666788 77776666676555554433 34578999985
No 194
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=46.89 E-value=51 Score=25.85 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCcceEEEEEec-CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc-CCCCEEEec
Q 031383 82 RAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH-VKCPVVIVK 155 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~-~~~pVlvv~ 155 (160)
-+...++..| ++..... .-+.+.|++.++++++|+|.+.......... +..+.+.|-+. ..+||++--
T Consensus 117 iva~~L~~~G----~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~--m~~~i~~Lr~~g~~i~ViVGG 186 (579)
T 3bul_A 117 IVGVVLQCNN----YEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDE--MVNVAKEMERQGFTIPLLIGG 186 (579)
T ss_dssp HHHHHHHTTT----CEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHH--HHHHHHHHHHTTCCSCEEEES
T ss_pred HHHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHH--HHHHHHHHHHcCCCCeEEEEc
Confidence 3444566667 5555443 3788999999999999999998654333221 22333444332 248887753
No 195
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=46.88 E-value=76 Score=22.61 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=39.4
Q ss_pred cceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcc--c-ceeeccchhHHHhhcCCCCEEEecCC
Q 031383 93 NIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGF--I-KRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~--~-~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
++++-..+...+..+ ++.+.+++.++|-+++-...... . ...+ =..-+.|...++.||++..-+
T Consensus 80 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l-~~~f~~ia~a~~lPiilYn~P 148 (318)
T 3qfe_A 80 DFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVI-KSFFDDVSCQSPLPVVIYNFP 148 (318)
T ss_dssp TSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHH-HHHHHHHHHHCSSCEEEEECC
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHH-HHHHHHHHhhCCCCEEEEeCC
Confidence 356655555444444 55578899999988886542111 1 1111 124467888899999998654
No 196
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=46.82 E-value=59 Score=23.87 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHhcCCC------------CCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHH-HHHH
Q 031383 15 SEESMHALSWCLNNLFSP------------DTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVN-SVMN 81 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~------------~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (160)
...+.+.+++|+++|++. +. .+|+++|=. +.. +... -+.+
T Consensus 161 r~~~eRIar~AFe~A~~r~~~~~~~~~~~~~r-kkVt~v~Ka--NVl------------------------~~s~glf~~ 213 (366)
T 3ty4_A 161 EEASTKIGKMAFEIAKSRQKIRESGTYSIHKK-PLVTIIHKS--NVM------------------------SVTDGLFRE 213 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSS-CEEEEEECT--TTC------------------------TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccccccccCCC-CeEEEEECC--cch------------------------HhHHHHHHH
Confidence 356888999999999876 22 588888733 222 1111 1233
Q ss_pred HHHHH---HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 82 RAEAV---YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 82 ~~~~~---~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.+.+. .++++ .+.++..... +.+-.++..=+ ..|+||..
T Consensus 214 ~~~ev~~~a~eyp-dV~~~~~~VD-~~am~lv~~P~--~FDViVt~ 255 (366)
T 3ty4_A 214 SCRHAQSLDPSYA-SINVDEQIVD-SMVYRLFREPE--CFDVVVAP 255 (366)
T ss_dssp HHHHHGGGCGGGT-TSEEEEEEHH-HHHHHHHHCGG--GCSEEEEC
T ss_pred HHHHHHHhHhhCC-CceEEeeeHH-HHHHHHHhCcc--cCcEEEEC
Confidence 33444 44555 5777766654 44444444443 78988875
No 197
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=46.81 E-value=42 Score=19.70 Aligned_cols=66 Identities=5% Similarity=0.014 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
+.+...+.+.| ..+ . ...+ ..+.++......+|+|++.. .....+. ...+.+-... .+||+++-..
T Consensus 18 ~~l~~~L~~~g--~~v--~-~~~~-~~~a~~~l~~~~~dlvi~d~--~~~~~g~---~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 18 LAVKNALEKDG--FNV--I-WAKN-EQEAFTFLRREKIDLVFVDV--FEGEESL---NLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHGGGT--CEE--E-EESS-HHHHHHHHTTSCCSEEEEEC--TTTHHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHhCC--CEE--E-EECC-HHHHHHHHhccCCCEEEEeC--CCCCcHH---HHHHHHHHHCCCCCEEEEECC
Confidence 34444555556 432 2 2233 34455666667999999986 3322211 2344444444 4899888543
No 198
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=46.57 E-value=43 Score=19.65 Aligned_cols=49 Identities=6% Similarity=-0.020 Sum_probs=28.2
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh---cCCCCEEEecCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK---HVKCPVVIVKHP 157 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~---~~~~pVlvv~~~ 157 (160)
-.++.++..+...+|++++...-.. ..+ -...+.+-. ...+||+++-..
T Consensus 39 ~~~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 39 SGGQCIDLLKKGFSGVVLLDIMMPG-MDG---WDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp SHHHHHHHHHTCCCEEEEEESCCSS-SCH---HHHHHHHHHTTCCTTEEEEEEECT
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhhcccCCCCEEEEECC
Confidence 3455556667778999999854221 111 123455544 234899888543
No 199
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=46.56 E-value=53 Score=21.40 Aligned_cols=57 Identities=9% Similarity=-0.152 Sum_probs=32.9
Q ss_pred EEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh--cCCCCEEEecC
Q 031383 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK--HVKCPVVIVKH 156 (160)
Q Consensus 96 ~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~--~~~~pVlvv~~ 156 (160)
+.......+..+++...+....+|+|++...- .+..++ ...+.+-. ...+||+++-.
T Consensus 33 ~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~m-p~~~G~---~~~~~lr~~~~~~~~ii~lt~ 91 (225)
T 3klo_A 33 LALEITPFSELWLEENKPESRSIQMLVIDYSR-ISDDVL---TDYSSFKHISCPDAKEVIINC 91 (225)
T ss_dssp EEEEEECGGGHHHHTTCSGGGGCCEEEEEGGG-CCHHHH---HHHHHHHHHHCTTCEEEEEEE
T ss_pred ceEEEEeCCcHHHHHHHhhccCCCEEEEeCCC-CCCCHH---HHHHHHHHhhCCCCcEEEEEC
Confidence 44434444566667666777899999998542 111111 13344544 34589988843
No 200
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=46.45 E-value=48 Score=20.16 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec--CCcccceeeccchhHHHhh---cCCCCEEEecC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH--GYGFIKRALLGSVSDYCAK---HVKCPVVIVKH 156 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~--~~~~~~~~~~gs~~~~ll~---~~~~pVlvv~~ 156 (160)
.++..+++.| .. ......+. .+.++..++..+|+|++-.. +.++++ .++.|-. ...+||+++-.
T Consensus 27 ~l~~~L~~~G--~~--~v~~a~~g-~~al~~~~~~~~DlillD~~MP~mdG~e------l~~~ir~~~~~~~ipvI~lTa 95 (134)
T 3to5_A 27 IVKNLLRDLG--FN--NTQEADDG-LTALPMLKKGDFDFVVTDWNMPGMQGID------LLKNIRADEELKHLPVLMITA 95 (134)
T ss_dssp HHHHHHHHTT--CC--CEEEESSH-HHHHHHHHHHCCSEEEEESCCSSSCHHH------HHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHHHcC--Cc--EEEEECCH-HHHHHHHHhCCCCEEEEcCCCCCCCHHH------HHHHHHhCCCCCCCeEEEEEC
Confidence 3445556666 32 11122233 33445566779999999853 333332 3334432 23589998854
Q ss_pred C
Q 031383 157 P 157 (160)
Q Consensus 157 ~ 157 (160)
.
T Consensus 96 ~ 96 (134)
T 3to5_A 96 E 96 (134)
T ss_dssp S
T ss_pred C
Confidence 3
No 201
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=45.89 E-value=47 Score=19.93 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
.+...+.+.| ..+ . ...+. .+.++......+|+|++...-.. ..++ ...+.|-... .+||+++-..
T Consensus 29 ~l~~~L~~~g--~~v--~-~~~~~-~~a~~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 29 RLQQLLSPLP--YTL--H-FARDA-TQALQLLASREVDLVISAAHLPQ-MDGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHTTSS--CEE--E-EESSH-HHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHhcccC--cEE--E-EECCH-HHHHHHHHcCCCCEEEEeCCCCc-CcHH---HHHHHHHhHCCCCeEEEEECC
Confidence 3444555556 332 2 22333 44445556779999999854221 1111 1334444443 4888888554
No 202
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=45.66 E-value=55 Score=20.69 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=24.2
Q ss_pred HHHHHHhcCCcceEEEEEecCChhhHHHHHhhh----hCCCEEEEe
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~----~~~dllvig 124 (160)
+...+++.| ..+......+|..+.|.+..++ .++|+||+.
T Consensus 26 l~~~l~~~G--~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 26 IREVLAGGP--FEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHTTSS--EEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHCC--CeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 445566778 6666555556555555444333 279999884
No 203
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=45.19 E-value=67 Score=21.55 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
...+++..+.+.+++.| ..+......++.. ..+++.....++|-||+..... . ..-..+....+||+
T Consensus 21 ~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~------~~~~~l~~~~iPvV 89 (276)
T 3jy6_A 21 FSTELFKGISSILESRG--YIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---P------QTVQEILHQQMPVV 89 (276)
T ss_dssp HHHHHHHHHHHHHHTTT--CEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---H------HHHHHHHTTSSCEE
T ss_pred HHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---H------HHHHHHHHCCCCEE
Confidence 34456666777777788 6665554444433 3566777778999999875432 1 11234566789999
Q ss_pred EecCC
Q 031383 153 IVKHP 157 (160)
Q Consensus 153 vv~~~ 157 (160)
++-..
T Consensus 90 ~i~~~ 94 (276)
T 3jy6_A 90 SVDRE 94 (276)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 88543
No 204
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=45.16 E-value=46 Score=19.60 Aligned_cols=68 Identities=9% Similarity=0.015 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.+...+.+.| ..+. ...+..+.+....+...+|+|++...-..+..++ ...+.+-+...+||+++-..
T Consensus 20 ~l~~~L~~~g--~~v~---~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 20 TIANILNKYG--YTVE---IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp HHHHHHHHTT--CEEE---EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEESS
T ss_pred HHHHHHHHcC--CEEE---EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEECC
Confidence 3444455556 4332 2334444444433336899999985421111111 23444544556899988543
No 205
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=44.99 E-value=19 Score=25.96 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=31.8
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecC-Cccc-ceeeccchhHHHhhcCCCCEEEecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHG-YGFI-KRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~-~~~~-~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+..+.++.++ ++|+||+|... .+.+ ..++...+.+. ++++++|++.|.+
T Consensus 173 ~a~p~al~AI~--~AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 224 (326)
T 2q7x_A 173 LASRRVVQTIL--ESDMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCN 224 (326)
T ss_dssp CBCSHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEecc
Confidence 34556777777 89999999543 2222 22333334444 6788899988865
No 206
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=44.96 E-value=25 Score=24.84 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE-ec
Q 031383 109 ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI-VK 155 (160)
Q Consensus 109 i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv-v~ 155 (160)
+++.+.+.+.|.+++|+.+-+.+... ...+...|-+.++.||++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCCCCEEEECC
Confidence 56667778999999993333322222 244556666668999999 87
No 207
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=44.74 E-value=52 Score=20.40 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=25.7
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..-.+.-++.+.+.-++|+...+..-....-.+-+.+.+..+.||+++=
T Consensus 73 ~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~ 121 (141)
T 4e0q_A 73 NKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQL 121 (141)
T ss_dssp HHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEE
Confidence 3444445556677888887654431111111244556666678888773
No 208
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=44.56 E-value=70 Score=21.59 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
...+...+...+.+.| ..+......++... ..++.....++|-||+......... ... ..+....+||++
T Consensus 23 ~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~~-~~~~~~~iPvV~ 94 (293)
T 3l6u_A 23 AQRLINAFKAEAKANK--YEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG-----SAI-EEAKKAGIPVFA 94 (293)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH-----HHH-HHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HHH-HHHHHcCCCEEE
Confidence 3455666667777778 66655544444433 4556666779999998644332211 112 344566899999
Q ss_pred ecCC
Q 031383 154 VKHP 157 (160)
Q Consensus 154 v~~~ 157 (160)
+-..
T Consensus 95 ~~~~ 98 (293)
T 3l6u_A 95 IDRM 98 (293)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 8543
No 209
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=43.97 E-value=51 Score=19.78 Aligned_cols=47 Identities=9% Similarity=0.003 Sum_probs=27.5
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKH 156 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~ 156 (160)
.++.++......+|++++...-.+ ..+. ...+.+-... .+||+++-.
T Consensus 36 ~~~a~~~l~~~~~dliild~~l~~-~~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 36 ATEALAGLSADFAGIVISDIRMPG-MDGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHHTCCTTCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEEC
Confidence 445556666778999999854221 1111 2344454443 489988743
No 210
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=43.86 E-value=44 Score=22.28 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=30.6
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+.++.+.+.++|.|++......+...-+.-.....+.+..++||++.
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~ 204 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIAS 204 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEe
Confidence 355677777899999887554433322222234566777778999875
No 211
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=43.68 E-value=78 Score=21.85 Aligned_cols=72 Identities=11% Similarity=-0.059 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
.+...+.+.+++.| ..+......++... ..++.....++|-||+......... .. -..+....+||+++-
T Consensus 20 ~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~giPvV~~~ 91 (330)
T 3uug_A 20 DDGNNIVKQLQEAG--YKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLS-----DV-LKQAGEQGIKVIAYD 91 (330)
T ss_dssp HHHHHHHHHHHHTT--CEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGH-----HH-HHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcC--CEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHH-----HH-HHHHHHCCCCEEEEC
Confidence 35556666667777 66555554445443 4455566679999998754322211 11 234556789999985
Q ss_pred CC
Q 031383 156 HP 157 (160)
Q Consensus 156 ~~ 157 (160)
..
T Consensus 92 ~~ 93 (330)
T 3uug_A 92 RL 93 (330)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=43.67 E-value=1e+02 Score=23.22 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=16.0
Q ss_pred HHHHHhhhhCCCEEEEeecCCcc
Q 031383 108 VICGTVEKLEADTLVMGSHGYGF 130 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~~~~~~ 130 (160)
..++.++.+++|+|++-+.++..
T Consensus 173 ~al~~a~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCCCSS
T ss_pred HHHHHHHhCCCCEEEEECCCccc
Confidence 44566666779999987666554
No 213
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=43.52 E-value=33 Score=25.76 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=10.2
Q ss_pred cCCCCEEEecCCCC
Q 031383 146 HVKCPVVIVKHPEE 159 (160)
Q Consensus 146 ~~~~pVlvv~~~~~ 159 (160)
+..+||++++.-++
T Consensus 137 ~~~ipV~~I~GNHD 150 (431)
T 3t1i_A 137 NISIPVFSIHGNHD 150 (431)
T ss_dssp CBCSCEEECCCSSS
T ss_pred cCCCcEEEEccCCC
Confidence 45799999976543
No 214
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=43.40 E-value=25 Score=23.54 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=26.2
Q ss_pred CCCCceEEEEEecCChHHHH-HHHHHHHhcCCCCCCCeEEEEEE
Q 031383 1 MNTNERRVVVAVDESEESMH-ALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~-al~~a~~~a~~~~~~a~l~~l~v 43 (160)
|.-..++|++++.|+-..-. +++..-.+.+ .+ .+++++--
T Consensus 1 m~l~~k~IllgiTGsiaayk~~~~ll~~L~~-~g--~eV~vv~T 41 (207)
T 3mcu_A 1 MSLKGKRIGFGFTGSHCTYEEVMPHLEKLIA-EG--AEVRPVVS 41 (207)
T ss_dssp -CCTTCEEEEEECSCGGGGTTSHHHHHHHHH-TT--CEEEEEEC
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHHHHHHh-CC--CEEEEEEe
Confidence 44456899999999865554 6666655544 35 67776653
No 215
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=43.35 E-value=76 Score=23.11 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=37.7
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC--CcccceeeccchhHH-HhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG--YGFIKRALLGSVSDY-CAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~--~~~~~~~~~gs~~~~-ll~~~~~pVlvv~ 155 (160)
+.+.| ++++.... + ++.......++|.|++|+.. .+++ -.-.|+..-. +.++-++|++|+-
T Consensus 202 L~~~G--I~vtlI~D--s---a~~~~M~~~~Vd~VivGAd~V~aNGv-~NKiGT~~lAl~Ak~~~vPfyV~a 265 (351)
T 1t5o_A 202 LMEDG--IDVTLITD--S---MVGIVMQKGMVDKVIVGADRIVRDAV-FNKIGTYTVSVVAKHHNIPFYVAA 265 (351)
T ss_dssp HHHTT--CCEEEECG--G---GHHHHHHTTCCSEEEECCSEEETTEE-EEETTHHHHHHHHHHTTCCEEEEC
T ss_pred HHhCC--CCEEEEeh--h---HHHHHhhcCCCCEEEECccchhhcCc-ccccCHHHHHHHHHHcCCCEEEeC
Confidence 34466 77765543 2 33444555579999999764 4443 3345664444 5566679999984
No 216
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=43.34 E-value=76 Score=21.61 Aligned_cols=73 Identities=8% Similarity=0.038 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEe-cCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVG-CGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..++..+...+++.| ..+..... .++... ..++.....++|-||+.......... . -.-+....+||++
T Consensus 20 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~-~~~~~~~~iPvV~ 91 (305)
T 3g1w_A 20 KRCLKGFEDAAQALN--VTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTD-----T-INKAVDAGIPIVL 91 (305)
T ss_dssp HHHHHHHHHHHHHHT--CEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHH-----H-HHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHcC--CEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHH-----H-HHHHHHCCCcEEE
Confidence 345556666666677 55554322 234433 45566666799999986543322111 1 2334567899998
Q ss_pred ecCC
Q 031383 154 VKHP 157 (160)
Q Consensus 154 v~~~ 157 (160)
+-..
T Consensus 92 ~~~~ 95 (305)
T 3g1w_A 92 FDSG 95 (305)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 8543
No 217
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=43.26 E-value=85 Score=22.17 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=38.8
Q ss_pred cceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcc--cceeeccchhHHHhhcCCCCEEEecC
Q 031383 93 NIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGF--IKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~--~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
++.+-..+...+..+ ++.+.+++.++|-+.+-..-... ...--+=..-+.|...++.||++..-
T Consensus 83 r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~ 150 (307)
T 3s5o_A 83 NRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSV 150 (307)
T ss_dssp TSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeC
Confidence 355555444434444 45678899999999986543221 11111112446788889999999853
No 218
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=43.23 E-value=71 Score=21.27 Aligned_cols=104 Identities=10% Similarity=0.084 Sum_probs=57.2
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
+||.|-+.++-....++-.++.- ...+ .+|.+|-..++.. ...+
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~~~~-~~~~--~~i~~Vis~~~~~---------------------------------~~~~ 44 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACKT-NKIK--GTVRAVFSNKADA---------------------------------FGLE 44 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHT-TSSS--SEEEEEEESCTTC---------------------------------HHHH
T ss_pred CEEEEEEECCcHHHHHHHHHHHc-CCCC--ceEEEEEeCCCch---------------------------------HHHH
Confidence 37888888877666666555443 2223 4555444332221 0134
Q ss_pred HHHhcCCcceEEEEEecC--C---hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 86 VYRNFQNNIHVKRVVGCG--D---AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g--~---~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+++.| +++....... + ...++++..++.++|++|+...++- +...++...+..++=+++
T Consensus 45 ~A~~~g--Ip~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~i---------l~~~~l~~~~~~~iNiHp 109 (212)
T 1jkx_A 45 RARQAG--IATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRI---------LSPAFVSHYAGRLLNIHP 109 (212)
T ss_dssp HHHHTT--CEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCCSC---------CCHHHHHHTTTSEEEEES
T ss_pred HHHHcC--CcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChhhh---------CCHHHHhhccCCEEEEcc
Confidence 556677 6655422111 1 1357888899999999999755322 123455555555555543
No 219
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=43.01 E-value=44 Score=22.14 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=26.4
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
+||++++.|+-.+-.+++..-.+.+..+ .+++++.
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g--~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPN--VETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTT--CEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccC--CEEEEEE
Confidence 3799999999888888888877754325 5776664
No 220
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=42.89 E-value=54 Score=19.75 Aligned_cols=67 Identities=4% Similarity=0.033 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHP 157 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~ 157 (160)
+.+...+++.| ..+ . ...+ .++.++......+|+|++...-.+ ..++ ...+.|-.. ..+||+++-..
T Consensus 21 ~~l~~~L~~~g--~~v--~-~~~~-~~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 21 EHLKHILEETG--YQT--E-HVRN-GREAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHHHTTT--CEE--E-EESS-HHHHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHHHCC--CEE--E-EeCC-HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEECC
Confidence 33445555566 433 2 2233 444556667789999999854211 1111 133444443 35899988543
No 221
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=42.75 E-value=88 Score=22.18 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=38.2
Q ss_pred cceEEEEEecCChhhH--HHHHhhhhCC-CEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 93 NIHVKRVVGCGDAKDV--ICGTVEKLEA-DTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~--i~~~a~~~~~-dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
++++-..+...+..+. +.+.+++.++ |-+++...-......--+=..-+.|...++.||++..-
T Consensus 76 rvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 142 (311)
T 3h5d_A 76 RVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNI 142 (311)
T ss_dssp SSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEEC
T ss_pred CCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEec
Confidence 3566555554455554 4577888776 98777653322221111122457788999999999853
No 222
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=42.29 E-value=30 Score=20.41 Aligned_cols=38 Identities=3% Similarity=0.038 Sum_probs=21.4
Q ss_pred hCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCC
Q 031383 116 LEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHP 157 (160)
Q Consensus 116 ~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~ 157 (160)
..+|+|++...-.. ..++ ...+.+-.. ..+||+++-..
T Consensus 58 ~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 58 IHPKLILLDINIPK-MNGI---EFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp CCCSEEEEETTCTT-SCHH---HHHHHHTTSGGGTTCEEEEEESC
T ss_pred CCCCEEEEecCCCC-CCHH---HHHHHHHcCccccCCcEEEEeCC
Confidence 68999999854221 1111 233444444 45888887543
No 223
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=42.21 E-value=50 Score=19.22 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=27.8
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.++.++......+|++++...-.+...++ ...+.+-....+||+++-..
T Consensus 43 ~~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 43 GEEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 34445556667899999985432111111 13344444456899988543
No 224
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=42.18 E-value=35 Score=26.02 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=16.2
Q ss_pred hHHHHHhhhhCCCEEEEee
Q 031383 107 DVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~ 125 (160)
+.+++.+.+.++|+||++.
T Consensus 105 ~~lv~~~~~~~~D~VliaG 123 (472)
T 4fbk_A 105 NEILEIARERDVDMILLGG 123 (472)
T ss_dssp HHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHhcCCCEEEEcC
Confidence 6788888889999999974
No 225
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=41.79 E-value=80 Score=21.47 Aligned_cols=74 Identities=9% Similarity=0.075 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEec--CChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCE
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGC--GDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
...+...+.+.+++.| ..+...... ++... ..++.....++|-||+.......... . -.-+....+||
T Consensus 18 ~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~-----~-~~~~~~~giPv 89 (297)
T 3rot_A 18 WTSLFQGAKKAAEELK--VDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSK-----S-LQRANKLNIPV 89 (297)
T ss_dssp HHHHHHHHHHHHHHHT--CEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHH-----H-HHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHhC--cEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH-----H-HHHHHHCCCCE
Confidence 3445556666666677 555544322 23333 45566666799999986543332211 1 23355568999
Q ss_pred EEecCC
Q 031383 152 VIVKHP 157 (160)
Q Consensus 152 lvv~~~ 157 (160)
+.+-..
T Consensus 90 V~~~~~ 95 (297)
T 3rot_A 90 IAVDTR 95 (297)
T ss_dssp EEESCC
T ss_pred EEEcCC
Confidence 988543
No 226
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=41.78 E-value=1e+02 Score=22.78 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEE
Q 031383 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (160)
Q Consensus 18 s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
-..|+++|-.++. .+ +.+..+.++.+......+.+ . ..+-+..+.+.+++.| +.+-
T Consensus 155 ~e~a~~~a~~~k~-aG--a~~vk~q~fkprts~~~f~g-----l--------------~~egl~~L~~~~~~~G--l~~~ 210 (385)
T 3nvt_A 155 YEQVAAVAESIKA-KG--LKLIRGGAFKPRTSPYDFQG-----L--------------GLEGLKILKRVSDEYG--LGVI 210 (385)
T ss_dssp HHHHHHHHHHHHH-TT--CCEEECBSSCCCSSTTSCCC-----C--------------THHHHHHHHHHHHHHT--CEEE
T ss_pred HHHHHHHHHHHHH-cC--CCeEEcccccCCCChHhhcC-----C--------------CHHHHHHHHHHHHHcC--CEEE
Confidence 3345555555543 46 68777777764432111110 0 0123345556677788 7777
Q ss_pred EEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 98 RVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 98 ~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+.+..-...+.+ .+. +|++=+|+....... .. .-+.++.+||++=...
T Consensus 211 te~~d~~~~~~l----~~~-vd~lkIgs~~~~n~~------LL-~~~a~~gkPVilk~G~ 258 (385)
T 3nvt_A 211 SEIVTPADIEVA----LDY-VDVIQIGARNMQNFE------LL-KAAGRVDKPILLKRGL 258 (385)
T ss_dssp EECCSGGGHHHH----TTT-CSEEEECGGGTTCHH------HH-HHHHTSSSCEEEECCT
T ss_pred EecCCHHHHHHH----Hhh-CCEEEECcccccCHH------HH-HHHHccCCcEEEecCC
Confidence 666554443333 344 899999977655431 11 2344567888776544
No 227
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=41.76 E-value=52 Score=19.27 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=27.9
Q ss_pred hhHHHHHhhh-hCCCEEEEeecCCcccceeeccchhHHHhh---cCCCCEEEecCC
Q 031383 106 KDVICGTVEK-LEADTLVMGSHGYGFIKRALLGSVSDYCAK---HVKCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~-~~~dllvig~~~~~~~~~~~~gs~~~~ll~---~~~~pVlvv~~~ 157 (160)
..+.++.... ..+|+|++...-.+...++ ...+.|-. ...+||+++-..
T Consensus 38 ~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 38 LKKFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp HHHHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEEEeCC
Confidence 3445566666 8999999985432122111 13344444 345899988543
No 228
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=41.75 E-value=52 Score=19.64 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=22.5
Q ss_pred hhhCCCEEEEeecCCcccceeeccchhHHHhh--c-CCCCEEEecCC
Q 031383 114 EKLEADTLVMGSHGYGFIKRALLGSVSDYCAK--H-VKCPVVIVKHP 157 (160)
Q Consensus 114 ~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~--~-~~~pVlvv~~~ 157 (160)
....+|+|++...-. ...++ ...+.|-. . ..+||+++-..
T Consensus 56 ~~~~~dliilD~~l~-~~~g~---~~~~~lr~~~~~~~~pii~~t~~ 98 (152)
T 3heb_A 56 SAGRAQLVLLDLNLP-DMTGI---DILKLVKENPHTRRSPVVILTTT 98 (152)
T ss_dssp GTTCBEEEEECSBCS-SSBHH---HHHHHHHHSTTTTTSCEEEEESC
T ss_pred ccCCCCEEEEeCCCC-CCcHH---HHHHHHHhcccccCCCEEEEecC
Confidence 356899999985421 11111 23444544 2 34899888544
No 229
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=41.56 E-value=61 Score=21.83 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=28.1
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+.+...+.++|.|.+.............-.....+.+..++||++.
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ 85 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 85 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEe
Confidence 356666666788888775433222111122235667777778888775
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=41.14 E-value=1.1e+02 Score=22.92 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=16.5
Q ss_pred HHHHHhhhhCCCEEEEeecCCcc
Q 031383 108 VICGTVEKLEADTLVMGSHGYGF 130 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~~~~~~ 130 (160)
..++.+...++|+|++-+.++..
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHHhcCCCEEEEECCCCcc
Confidence 34555666789999998877655
No 231
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=41.05 E-value=51 Score=18.99 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=27.8
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHP 157 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~ 157 (160)
-.++.++......+|+|++...-.. ..++ ...+.+-+. ..+||+++-..
T Consensus 35 ~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 35 DGASGLQQALAHPPDVLISDVNMDG-MDGY---ALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp SHHHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHSTTTTTCCEEEEESC
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCccCCCCEEEEeCC
Confidence 3344455666778999999854211 1111 133444443 25899988543
No 232
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=40.95 E-value=84 Score=21.44 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEe-cC-------C--hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVG-CG-------D--AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV 147 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~-~g-------~--~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~ 147 (160)
+...++.+.+.+++ +.+...+. .| + ....+.+.+.+.++|.|.++.. .++ .....+...+
T Consensus 132 ~~~~~v~~~~~~~g--~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~------~~l~~i~~~~ 201 (273)
T 2qjg_A 132 RDLGMIAETCEYWG--MPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDI------DSFRDVVKGC 201 (273)
T ss_dssp HHHHHHHHHHHHHT--CCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSH------HHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC--CCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCH------HHHHHHHHhC
Confidence 34455555666667 55443331 11 1 1233447788889999988731 112 2446777778
Q ss_pred CCCEEEec
Q 031383 148 KCPVVIVK 155 (160)
Q Consensus 148 ~~pVlvv~ 155 (160)
++||+...
T Consensus 202 ~ipvva~G 209 (273)
T 2qjg_A 202 PAPVVVAG 209 (273)
T ss_dssp SSCEEEEC
T ss_pred CCCEEEEe
Confidence 89998864
No 233
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=40.66 E-value=52 Score=18.92 Aligned_cols=66 Identities=6% Similarity=0.065 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
.+...+.+.| ..+. . ..+ .++.++..+...+|++++...-.. ..+ -...+.+-+.. .+||+++-..
T Consensus 22 ~l~~~L~~~g--~~v~--~-~~~-~~~a~~~l~~~~~dlvi~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 22 LLDSWFSSLG--ATTV--L-AAD-GVDALELLGGFTPDLMICDIAMPR-MNG---LKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHHHTT--CEEE--E-ESC-HHHHHHHHTTCCCSEEEECCC------C---HHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHhCC--ceEE--E-eCC-HHHHHHHHhcCCCCEEEEecCCCC-CCH---HHHHHHHHhcCCCCCEEEEEcC
Confidence 3444455566 4332 2 233 344555667778999999854211 111 12334454444 4899888554
No 234
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=40.62 E-value=80 Score=21.11 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
...++++.+...+++.| ..+......++.. ..+++.....++|-||+.... ....+..+.....||+
T Consensus 22 ~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~---------~~~~~~~l~~~~iPvV 90 (277)
T 3e61_A 22 FFTLIARGVEDVALAHG--YQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN---------ENIIENTLTDHHIPFV 90 (277)
T ss_dssp HHHHHHHHHHHHHHHTT--CCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG---------HHHHHHHHHHC-CCEE
T ss_pred HHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---------hHHHHHHHHcCCCCEE
Confidence 34456666677777778 6665544444433 356677777899999996511 1112214566789999
Q ss_pred EecCC
Q 031383 153 IVKHP 157 (160)
Q Consensus 153 vv~~~ 157 (160)
++...
T Consensus 91 ~~~~~ 95 (277)
T 3e61_A 91 FIDRI 95 (277)
T ss_dssp EGGGC
T ss_pred EEecc
Confidence 88543
No 235
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=40.44 E-value=83 Score=24.18 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=28.1
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
++++++++|.-+|..++..+.+.. + .++.++|+-..
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a~---G--~~v~av~v~~g 263 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRAI---G--KNLTCVFVDNG 263 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---G--GGEEEEEEECS
T ss_pred cceEEEecCCCCHHHHHHHHHHHh---C--CCEEEEEEeCC
Confidence 689999999998888887776542 3 38889988754
No 236
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=40.25 E-value=1.1e+02 Score=22.38 Aligned_cols=106 Identities=10% Similarity=0.026 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcce
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
..-..++++|-.++. .+ +.+.-++.+.+......+.+ . + ++-+..+++.+++.| +.
T Consensus 117 es~e~a~~~a~~~k~-aG--a~~vr~q~fKprTs~~~f~g---l-g---------------~egl~~l~~~~~e~G--l~ 172 (350)
T 1vr6_A 117 EGREMLMETAHFLSE-LG--VKVLRGGAYKPRTSPYSFQG---L-G---------------EKGLEYLREAADKYG--MY 172 (350)
T ss_dssp CCHHHHHHHHHHHHH-TT--CCEEECBSCCCCCSTTSCCC---C-T---------------HHHHHHHHHHHHHHT--CE
T ss_pred CCHHHHHHHHHHHHH-cC--CCeeeeeEEeCCCChHhhcC---C-C---------------HHHHHHHHHHHHHcC--Cc
Confidence 334456666666644 45 57766677765542211111 0 0 234555666688888 88
Q ss_pred EEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 96 ~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+-+.+..-...+.+ .+. +|++=+|++...... ..+.+. .+.+||++=...
T Consensus 173 ~~te~~d~~~~~~l----~~~-vd~lkIgAr~~~n~~------LL~~va-~~~kPVilk~G~ 222 (350)
T 1vr6_A 173 VVTEALGEDDLPKV----AEY-ADIIQIGARNAQNFR------LLSKAG-SYNKPVLLKRGF 222 (350)
T ss_dssp EEEECSSGGGHHHH----HHH-CSEEEECGGGTTCHH------HHHHHH-TTCSCEEEECCT
T ss_pred EEEEeCCHHHHHHH----HHh-CCEEEECcccccCHH------HHHHHH-ccCCcEEEcCCC
Confidence 77766654444444 344 799999987655432 224444 567898876544
No 237
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=40.21 E-value=1e+02 Score=22.21 Aligned_cols=89 Identities=9% Similarity=0.056 Sum_probs=49.0
Q ss_pred EEEEEecCChH--HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 7 RVVVAVDESEE--SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 7 ~Ilv~~d~s~~--s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
++++|-.+... ....++...+.+..... .++.++|.... ...+++.+.+.
T Consensus 227 ~~i~pgHg~~~~~~~~~~~~~~~~~~~~~~-~k~~i~~~S~~---------------------------gnT~~la~~i~ 278 (404)
T 2ohh_A 227 QMIAPSHGQIWTDPMKIIEAYTGWATGMVD-ERVTVIYDTMH---------------------------GSTRKMAHAIA 278 (404)
T ss_dssp SEEECSSSCBBSSHHHHHHHHHHHHTTCCC-SEEEEEECCSS---------------------------SHHHHHHHHHH
T ss_pred cEEecCCCccccCHHHHHHHHHHHhccCCC-CcEEEEEECCC---------------------------hHHHHHHHHHH
Confidence 46666655422 34555555555542222 57777775531 12334444455
Q ss_pred HHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
+.+.+.+ +.++..-........+..... .+|.||+|+..
T Consensus 279 ~~l~~~g--~~v~~~~~~~~~~~~~~~~l~--~~d~iiigsP~ 317 (404)
T 2ohh_A 279 EGAMSEG--VDVRVYCLHEDDRSEIVKDIL--ESGAIALGAPT 317 (404)
T ss_dssp HHHHTTT--CEEEEEETTTSCHHHHHHHHH--TCSEEEEECCE
T ss_pred HHHHhCC--CeEEEEECCCCCHHHHHHHHH--HCCEEEEECcc
Confidence 5555556 666655444433445555555 89999999654
No 238
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=40.18 E-value=57 Score=19.27 Aligned_cols=67 Identities=4% Similarity=0.134 Sum_probs=33.8
Q ss_pred HHHHHHHHhc-CCcceEEEEEecCChhhHHHHHhhhh-CCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 81 NRAEAVYRNF-QNNIHVKRVVGCGDAKDVICGTVEKL-EADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~i~~~a~~~-~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+.++..+++. + +.......+..+.+ +..... .+|+|++...- .+..++ ...+.+-...++|++++-.
T Consensus 27 ~~l~~~L~~~~~----~~~v~~~~~~~~al-~~l~~~~~~dlvilD~~l-~~~~g~---~~~~~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 27 LYIASFIKTLPD----FKVVAQAANGQEAL-DKLAAQPNVDLILLDIEM-PVMDGM---EFLRHAKLKTRAKICMLSS 95 (145)
T ss_dssp HHHHHHHTTCTT----EEEEEEESSHHHHH-HHHHHCTTCCEEEECTTS-CCCTTC---HHHHHHHHHCCCEEC-CBS
T ss_pred HHHHHHHHhCCC----ceEEEEECCHHHHH-HHHhcCCCCCEEEEeCCC-CCCCHH---HHHHHHHhcCCCCeEEEEE
Confidence 3344445544 3 44333344444444 444555 79999998542 111111 2345555556678877643
No 239
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=39.86 E-value=32 Score=23.55 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=26.7
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..+++...+.++|++.+|.......... -...+.+-+ .+.||++.+
T Consensus 23 ~~~~~~l~~~GaD~ielG~S~Gvt~~~~--~~~v~~ir~-~~~Pivlm~ 68 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGSDGVTEDNV--LRMMSKVRR-FLVPCVLEV 68 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC----CHHHH--HHHHHHHTT-SSSCEEEEC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHH--HHHHHHhhC-cCCCEEEec
Confidence 4567777788999999996322222211 123344433 678998865
No 240
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=39.83 E-value=12 Score=22.31 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=25.0
Q ss_pred ceEEEEEecCChHH----HHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 5 ERRVVVAVDESEES----MHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s----~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
|+++++.+..+++. ..++++|...+.... ++.++..-+.
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a~~~---~v~vff~~DG 43 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTD---DLAVFFIADG 43 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCS---CEEEEECGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhCCC---CEEEEEehHH
Confidence 46788888776654 556777776654433 7766665543
No 241
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=39.74 E-value=85 Score=21.14 Aligned_cols=73 Identities=7% Similarity=-0.040 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+...+...+++.| ..+......++.. ...++.....++|-||+......... .. -..+....+||+++
T Consensus 21 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 21 LKAYQAQIAEIERLG--GTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLN-----PW-LQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHH-----HH-HHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHcC--CEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----HH-HHHHHHCCCcEEEe
Confidence 455666666777778 6655554444443 34566666779999998644311111 11 23455568999888
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
...
T Consensus 93 ~~~ 95 (291)
T 3l49_A 93 DTA 95 (291)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 242
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=39.04 E-value=1.1e+02 Score=22.31 Aligned_cols=81 Identities=5% Similarity=0.050 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 031383 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNN 93 (160)
Q Consensus 14 ~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (160)
....+.+.+++|+++|++.+. -+|+++|=...-.. ..--+.+.+.+..++++ .
T Consensus 161 T~~~~eRiar~AFe~A~~r~r-kkVt~v~KaNvlk~-------------------------sdglf~~~~~eva~eyp-d 213 (354)
T 3blx_B 161 TRDASERVIRYAFEYARAIGR-PRVIVVHKSTIQRL-------------------------ADGLFVNVAKELSKEYP-D 213 (354)
T ss_dssp EHHHHHHHHHHHHHHHHHTTC-SEEEEEESCTTTCH-------------------------HHHHHHHHHHHHGGGCT-T
T ss_pred cHHHHHHHHHHHHHHHHhcCC-CeEEEEECCcchHh-------------------------HHHHHHHHHHHHHHHCC-C
Confidence 346788999999999998743 57888874432211 11123444555555665 5
Q ss_pred ceEEEEEecCChhhHHHHHhhhhCCC--EEEEe
Q 031383 94 IHVKRVVGCGDAKDVICGTVEKLEAD--TLVMG 124 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~i~~~a~~~~~d--llvig 124 (160)
+.++..... +.+-.++..=. ..| ++|..
T Consensus 214 I~~~~~~vD-~~~m~lv~~P~--~FD~~Vivt~ 243 (354)
T 3blx_B 214 LTLETELID-NSVLKVVTNPS--AYTDAVSVCP 243 (354)
T ss_dssp SEEEEEEHH-HHHHHHHHCGG--GGTTEEEEEC
T ss_pred ceEEEEEHH-HHHHHHhhChh--hCCceEEEec
Confidence 777766653 34444444333 678 88875
No 243
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=38.87 E-value=32 Score=23.53 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=15.0
Q ss_pred hhhCCCEEEEeecCCcccc
Q 031383 114 EKLEADTLVMGSHGYGFIK 132 (160)
Q Consensus 114 ~~~~~dllvig~~~~~~~~ 132 (160)
++.++|.||+|+.+...+.
T Consensus 171 ~~~gad~IVLGCTh~p~l~ 189 (245)
T 3qvl_A 171 KEDGSGAIVLGSGGMATLA 189 (245)
T ss_dssp HHSCCSEEEECCGGGGGGH
T ss_pred HhcCCCEEEECCCChHHHH
Confidence 3468999999999877554
No 244
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=38.83 E-value=41 Score=22.18 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=27.2
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
.++|++++.|+-.+-.+.+..-.+.+ .+ .+++++.
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g--~~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS-FF--KEIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT-TS--SEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CC--CEEEEEE
Confidence 47999999999888888888877744 45 6777664
No 245
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=38.71 E-value=99 Score=21.86 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec------CCcccceee-ccc-------hhH
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH------GYGFIKRAL-LGS-------VSD 141 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~------~~~~~~~~~-~gs-------~~~ 141 (160)
.++++++++...++.. +.+..|--.---.++++..++|+|++-.. +++.+..++ +|+ ..+
T Consensus 13 r~~il~~l~~~i~~~~------~iig~gaGtGlsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~ 86 (286)
T 2p10_A 13 RSELVDRFQKKIRAGE------PIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAR 86 (286)
T ss_dssp HHHHHHHHHHHHHTTC------CEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC------ceEEEecccchhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHH
Confidence 4456666666655444 22222222223346778889999999643 355555544 444 244
Q ss_pred HHhhcC-CCCEEE
Q 031383 142 YCAKHV-KCPVVI 153 (160)
Q Consensus 142 ~ll~~~-~~pVlv 153 (160)
.++-.. ..||+.
T Consensus 87 evlp~v~~iPV~A 99 (286)
T 2p10_A 87 EVLPVVRHTPVLA 99 (286)
T ss_dssp HHGGGCSSSCEEE
T ss_pred hhhccCCCCCEEE
Confidence 566666 478774
No 246
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=38.40 E-value=54 Score=23.20 Aligned_cols=9 Identities=0% Similarity=-0.330 Sum_probs=4.5
Q ss_pred HHHhhcCCC
Q 031383 141 DYCAKHVKC 149 (160)
Q Consensus 141 ~~ll~~~~~ 149 (160)
..++.....
T Consensus 95 ~~~l~~~g~ 103 (333)
T 1ii7_A 95 LNLLEDFGL 103 (333)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHcCC
Confidence 345555554
No 247
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=38.30 E-value=82 Score=20.54 Aligned_cols=41 Identities=15% Similarity=0.040 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh---hCCCEEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK---LEADTLVMG 124 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~---~~~dllvig 124 (160)
.+...+++.| ..+.......|..+.|.+..++ .++|+||+.
T Consensus 53 ~L~~~L~~~G--~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 53 LVTELLTEAG--FVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHHHTT--EEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHCC--CEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 4455666778 6666555555555555544332 479999984
No 248
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=38.15 E-value=1.2e+02 Score=22.34 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeec
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~ 126 (160)
..+.+...+...+ +...+... ......++..++..+|.|+++..
T Consensus 75 tI~~I~~~a~~~g----yk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 75 AINKIVKLADDKE----VQAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp HHHHHHGGGGCTT----EEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred HHHHHHHHhhcCC----CeEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 4455555555555 44444332 22366788889889998887753
No 249
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=38.11 E-value=77 Score=20.42 Aligned_cols=41 Identities=17% Similarity=0.003 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh--hCCCEEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dllvig 124 (160)
.+...+.+.| ..+......+|-.+.|.+..++ ..+|+||..
T Consensus 27 ~l~~~L~~~G--~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 27 FIGNFLTYHG--YQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HHHHHHHHTT--CEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHCC--CEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 4455666778 7777666666655555544332 259999974
No 250
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=37.95 E-value=61 Score=18.96 Aligned_cols=68 Identities=7% Similarity=-0.010 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh-----hCCCEEEEeecCCcccceeeccchhHHHhh-----cCCCCE
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK-----LEADTLVMGSHGYGFIKRALLGSVSDYCAK-----HVKCPV 151 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~-----~~~dllvig~~~~~~~~~~~~gs~~~~ll~-----~~~~pV 151 (160)
.+...+...+ ..... ....+. ++.++..++ ..+|+|++...-. ...++ ...+.|-. ...+||
T Consensus 24 ~l~~~l~~~~--~~~~v-~~~~~~-~~a~~~l~~~~~~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~~~~~i 95 (146)
T 3ilh_A 24 LNTTIIRMTH--RVEEI-QSVTSG-NAAINKLNELYAAGRWPSIICIDINMP-GINGW---ELIDLFKQHFQPMKNKSIV 95 (146)
T ss_dssp HHHHHHHTTC--CEEEE-EEESSH-HHHHHHHHHHHTSSCCCSEEEEESSCS-SSCHH---HHHHHHHHHCGGGTTTCEE
T ss_pred HHHHHHHhcC--CCeee-eecCCH-HHHHHHHHHhhccCCCCCEEEEcCCCC-CCCHH---HHHHHHHHhhhhccCCCeE
Confidence 4445555566 32122 222333 334445555 7899999985422 11111 13344444 245888
Q ss_pred EEecCC
Q 031383 152 VIVKHP 157 (160)
Q Consensus 152 lvv~~~ 157 (160)
+++-..
T Consensus 96 i~~t~~ 101 (146)
T 3ilh_A 96 CLLSSS 101 (146)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 887543
No 251
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=37.84 E-value=77 Score=20.11 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=51.6
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (160)
..++.|++...+. .+...++.+-.++.... .+..+........ ++.++
T Consensus 19 ~~~~~iII~sHG~-~A~gl~~s~~~i~G~~~---~v~av~~~~~~~~----------------------------~~~~~ 66 (159)
T 3mtq_A 19 GMKRHYIFASHGS-FANGLLNSVELILGKQP---DIHTLCAYVEEEV----------------------------DLTQQ 66 (159)
T ss_dssp SCCEEEEEEEETT-HHHHHHHHHHHHHCCCT---TEEEEEETSCSSS----------------------------CHHHH
T ss_pred ccCceEEEEeCcH-HHHHHHHHHHHHcCCCC---CeEEEECCCCCHH----------------------------HHHHH
Confidence 4678899999997 67777777777777644 6777765543211 12223
Q ss_pred HHHHHHhcC--CcceEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 83 AEAVYRNFQ--NNIHVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 83 ~~~~~~~~~--~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
+++.+++.. .++-+-+-...|++......+.. +.++-|+.
T Consensus 67 ~~~~i~~~~~~~gVLiLtDl~GGSP~n~a~~~~~--~~~v~vIt 108 (159)
T 3mtq_A 67 VEALVARFPAQDELIVITDIFAGSVNNEFVRFLS--RPHFHLLS 108 (159)
T ss_dssp HHHHHHTSCTTSEEEEEESCTTSHHHHHHHGGGG--STTEEEEE
T ss_pred HHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHhc--CCCeEEEe
Confidence 334444332 12334444555788877766665 56666654
No 252
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=37.78 E-value=1.2e+02 Score=22.11 Aligned_cols=49 Identities=4% Similarity=-0.105 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCc
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
+++.+.+.+.+.+.+ +.++..-........+.+... .+|.||+|+...+
T Consensus 271 ~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~l~--~~D~iiigsP~y~ 319 (414)
T 2q9u_A 271 HRMALALLDGARSTG--CETVLLEMTSSDITKVALHTY--DSGAVAFASPTLN 319 (414)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEEEGGGCCHHHHHHHHH--TCSEEEEECCCBT
T ss_pred HHHHHHHHHHHHhCC--CeEEEEEcCcCCHHHHHHHHH--hCCEEEEEcCccC
Confidence 444455555555556 666555444333334444455 8999999976433
No 253
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=37.61 E-value=28 Score=25.81 Aligned_cols=52 Identities=6% Similarity=-0.059 Sum_probs=36.7
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
...+.+.+.+++.++|-||.-..............+-+.+.++..+|+|.+-
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie 372 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFD 372 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5567788889999999999876665554433333344456677889999884
No 254
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=37.49 E-value=1e+02 Score=21.45 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..++..+...+++.| ..+......++... ..++.....++|-||+....... .....++...++||+++
T Consensus 79 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~~~~~~~iPvV~~ 149 (338)
T 3dbi_A 79 SELLFHAARMAEEKG--RQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-------DEIDDIIDAHSQPIMVL 149 (338)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-------HHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHCC--CEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-------HHHHHHHHcCCCCEEEE
Confidence 345566666777777 55544443334333 35666667799999886432221 12345677778998888
Q ss_pred cC
Q 031383 155 KH 156 (160)
Q Consensus 155 ~~ 156 (160)
-.
T Consensus 150 ~~ 151 (338)
T 3dbi_A 150 NR 151 (338)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 255
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=37.38 E-value=43 Score=23.52 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=33.2
Q ss_pred Chhh--HHHHHhhhhCCCEEEEeecCCcc-cceeeccchhHHHhhcCCCCEEEec
Q 031383 104 DAKD--VICGTVEKLEADTLVMGSHGYGF-IKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 104 ~~~~--~i~~~a~~~~~dllvig~~~~~~-~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+..+ ++.+.+++.++|-+++...-... ...--+-..-+.|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYN 130 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 4444 44677888999998887543332 1111112244678888999999975
No 256
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=36.97 E-value=1e+02 Score=21.29 Aligned_cols=106 Identities=13% Similarity=0.064 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcce
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
.+-..|++++-.++. .+ +.+.-+..+.+......+. . .. .+-+..+++.+++.| +.
T Consensus 34 ~~~e~a~~~a~~l~~-~G--a~~vk~~~fkprts~~~~~---g-~~---------------~egl~~l~~~~~~~G--l~ 89 (262)
T 1zco_A 34 ESREQIMKVAEFLAE-VG--IKVLRGGAFKPRTSPYSFQ---G-YG---------------EKALRWMREAADEYG--LV 89 (262)
T ss_dssp CCHHHHHHHHHHHHH-TT--CCEEECBSSCCCSSTTSCC---C-CT---------------HHHHHHHHHHHHHHT--CE
T ss_pred CCHHHHHHHHHHHHH-cC--CCEEEEEecccCCCccccc---C-cc---------------HHHHHHHHHHHHHcC--Cc
Confidence 345566666666655 45 5766666665433211111 0 00 334555566677888 77
Q ss_pred EEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 96 ~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+-+.+..-.. ++++.+. +|.+=+|++...... ..+.+.+ +.+||++=...
T Consensus 90 ~~te~~d~~~----~~~l~~~-vd~~kIga~~~~n~~------ll~~~a~-~~kPV~lk~G~ 139 (262)
T 1zco_A 90 TVTEVMDTRH----VELVAKY-SDILQIGARNSQNFE------LLKEVGK-VENPVLLKRGM 139 (262)
T ss_dssp EEEECCCGGG----HHHHHHH-CSEEEECGGGTTCHH------HHHHHTT-SSSCEEEECCT
T ss_pred EEEeeCCHHh----HHHHHhh-CCEEEECcccccCHH------HHHHHHh-cCCcEEEecCC
Confidence 7666554333 4555555 899999987654321 2244444 68899885543
No 257
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=36.79 E-value=96 Score=20.92 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
...++..+.+.+++.| ..+......++.. ..+++.....++|-||+...... ...-..+....+||++
T Consensus 23 ~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~~~~~~iPvV~ 92 (291)
T 3egc_A 23 FAEVASGVESEARHKG--YSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE--------HDYLRTELPKTFPIVA 92 (291)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC--------CHHHHHSSCTTSCEEE
T ss_pred HHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--------hHHHHHhhccCCCEEE
Confidence 4455666667777778 6665554444433 34667777789999998654321 1122345566899998
Q ss_pred ecCC
Q 031383 154 VKHP 157 (160)
Q Consensus 154 v~~~ 157 (160)
+-..
T Consensus 93 ~~~~ 96 (291)
T 3egc_A 93 VNRE 96 (291)
T ss_dssp ESSC
T ss_pred Eecc
Confidence 8543
No 258
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=36.69 E-value=1.3e+02 Score=22.46 Aligned_cols=28 Identities=4% Similarity=0.055 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
..+.+.+++|+++|.+.+. .+|+++|=.
T Consensus 197 ~~~eRiar~AFe~A~~r~r-kkVt~v~Ka 224 (412)
T 2iv0_A 197 FATKRLVRMAIRYAIENNR-KSVTLVHKG 224 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcCC-CcEEEEECc
Confidence 5688999999999987753 478888743
No 259
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=36.53 E-value=92 Score=22.61 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
..+++..+.+.+.+.| ..+.... .+.....++.....++|-||+... ....-..+....+||+++-
T Consensus 39 ~~~l~~gi~~~a~~~g--~~~~i~~--~~~~~~~i~~l~~~~vDGiIi~~~----------~~~~~~~l~~~~iPvV~i~ 104 (412)
T 4fe7_A 39 DRQVVEGVGEYLQASQ--SEWDIFI--EEDFRARIDKIKDWLGDGVIADFD----------DKQIEQALADVDVPIVGVG 104 (412)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEEE--CC-CC--------CCCSEEEEETT----------CHHHHHHHTTCCSCEEEEE
T ss_pred hHHHHHHHHHHHHhcC--CCeEEEe--cCCccchhhhHhcCCCCEEEEecC----------ChHHHHHHhhCCCCEEEec
Confidence 3445566666666677 4444333 222334456666779999998311 1122345667789999884
No 260
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=36.45 E-value=32 Score=25.73 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=8.8
Q ss_pred cCCCCEEEecCC
Q 031383 146 HVKCPVVIVKHP 157 (160)
Q Consensus 146 ~~~~pVlvv~~~ 157 (160)
+..+||++++.-
T Consensus 118 ~~gIpV~~I~GN 129 (417)
T 4fbw_A 118 NVAIPVFSIHGN 129 (417)
T ss_dssp CBSSCEEECCCG
T ss_pred cCCCeEEEEecC
Confidence 347899998754
No 261
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=36.44 E-value=94 Score=20.73 Aligned_cols=49 Identities=10% Similarity=-0.082 Sum_probs=28.1
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..++.+.+.+.++|.|++-...+.+-...+--....++.+..++||+..
T Consensus 148 ~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~ 196 (244)
T 1vzw_A 148 LYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVAS 196 (244)
T ss_dssp HHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEE
Confidence 3455666777889977665433332211122346677888888999875
No 262
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=36.44 E-value=43 Score=23.41 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=33.2
Q ss_pred Chhh--HHHHHhhhhCCCEEEEeecCCcc-cceeeccchhHHHhhcCCCCEEEec
Q 031383 104 DAKD--VICGTVEKLEADTLVMGSHGYGF-IKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 104 ~~~~--~i~~~a~~~~~dllvig~~~~~~-~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+..+ ++.+.+++.++|-+++-..-... ...--+=..-+.|...++.||++..
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 129 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYN 129 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4444 44677888999999887544332 1111111244678888999999985
No 263
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=36.23 E-value=80 Score=21.40 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=25.5
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.++.+...+.++|.|.+......+......-.....+.+..++||++.
T Consensus 33 ~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ 80 (266)
T 2w6r_A 33 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 80 (266)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEE
Confidence 345556666678877774322221111112234556666677787764
No 264
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=35.90 E-value=66 Score=18.80 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=26.7
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh---cCCCCEEEecCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK---HVKCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~---~~~~pVlvv~~~ 157 (160)
..+.++......+|+|++...- .+..++ ...+.+-. ...+||+++-..
T Consensus 37 ~~~al~~~~~~~~dlvl~D~~l-p~~~g~---~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 37 GEEALQQIYKNLPDALICDVLL-PGIDGY---TLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp HHHHHHHHHHSCCSEEEEESCC-SSSCHH---HHHHHHHHSGGGTTCCEEEEECT
T ss_pred HHHHHHHHHhCCCCEEEEeCCC-CCCCHH---HHHHHHHcCCCcCCccEEEEecC
Confidence 3444556677899999998542 111111 13344433 235889887543
No 265
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=35.78 E-value=1.2e+02 Score=21.79 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
+.+.+.+.+...+ +.++..-........+.+... ++|.||+|+..
T Consensus 269 lA~~i~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~--~~d~ii~gsp~ 313 (402)
T 1e5d_A 269 MARVLAESFRDEG--CTVKLMWCKACHHSQIMSEIS--DAGAVIVGSPT 313 (402)
T ss_dssp HHHHHHHHHHHTT--CEEEEEETTTSCHHHHHHHHH--TCSEEEEECCC
T ss_pred HHHHHHHHHHhCC--CeEEEEECCCCCHHHHHHHHH--HCCEEEEECCc
Confidence 3334444444556 666655554444455555555 89999999754
No 266
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=35.66 E-value=68 Score=21.43 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=19.1
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHh
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNN 28 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~ 28 (160)
|..+..++.++.|+.+. ..+++.+-++
T Consensus 1 ~~~~~~~livAlD~~~~-~~a~~~~~~~ 27 (221)
T 3exr_A 1 MTKQLPNLQVALDHSNL-KGAITAAVSV 27 (221)
T ss_dssp --CCCCEEEEEECCSSH-HHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCH-HHHHHHHHhh
Confidence 66777899999999864 5567776665
No 267
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=35.64 E-value=1e+02 Score=20.84 Aligned_cols=71 Identities=14% Similarity=0.034 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+++..+.+.+++.| ..+....... +....+.+.....++|-||+...... ... -..+....+||+++
T Consensus 26 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~-~~~l~~~~iPvV~i 95 (288)
T 3gv0_A 26 SQMVFGITEVLSTTQ--YHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN-------DPR-VRFMTERNMPFVTH 95 (288)
T ss_dssp HHHHHHHHHHHTTSS--CEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT-------CHH-HHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHcC--CEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC-------cHH-HHHHhhCCCCEEEE
Confidence 445566666677777 5444433222 23356667777789999888643211 112 23455678999988
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
-..
T Consensus 96 ~~~ 98 (288)
T 3gv0_A 96 GRS 98 (288)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 268
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=35.60 E-value=86 Score=19.99 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh---h-CCCEEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK---L-EADTLVMG 124 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~---~-~~dllvig 124 (160)
.+...+++.| ..+......+|..+.|.+..++ . ++|+||+.
T Consensus 32 ~l~~~L~~~G--~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 32 YLRDSAQEAG--HHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHHTT--CEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHCC--CeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 3445566677 6666555555544444433322 2 59999884
No 269
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=35.37 E-value=44 Score=23.40 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=33.2
Q ss_pred Chhh--HHHHHhhhhCCCEEEEeecCCcc-cceeeccchhHHHhhcCCCCEEEec
Q 031383 104 DAKD--VICGTVEKLEADTLVMGSHGYGF-IKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 104 ~~~~--~i~~~a~~~~~dllvig~~~~~~-~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
+..+ ++.+.+++.++|-+++-..-... ...--+-..-+.|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYN 130 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4444 44677888999998887543332 1111112244678888999999975
No 270
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=35.29 E-value=79 Score=19.99 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=19.7
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhh---hCCCEEEEe
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEK---LEADTLVMG 124 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~---~~~dllvig 124 (160)
+++.| ..+......+|..+.|.+..++ .++|+||..
T Consensus 38 l~~~G--~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 38 LQDYS--YELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp ---CE--EEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHCC--CEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 55667 6665555556555555444333 259999884
No 271
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=35.18 E-value=63 Score=21.57 Aligned_cols=48 Identities=8% Similarity=-0.067 Sum_probs=30.0
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+.++.+.+.++|.|++-...+.+....+--....++.+..++||+..
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~ 199 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIAS 199 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEE
Confidence 456666777789988765544333221222345677888888999875
No 272
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=35.14 E-value=51 Score=19.47 Aligned_cols=44 Identities=11% Similarity=0.244 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCC-hhhHHHH-HhhhhCCCEEEEeecC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGD-AKDVICG-TVEKLEADTLVMGSHG 127 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~i~~-~a~~~~~dllvig~~~ 127 (160)
.+.++...++.| +.++...+... ....|.. .+. .+|+||+....
T Consensus 22 aeaL~~aA~~~G--~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d~ 67 (106)
T 2r48_A 22 AENLQKAADRLG--VSIKVETQGGIGVENKLTEEEIR--EADAIIIAADR 67 (106)
T ss_dssp HHHHHHHHHHHT--CEEEEEEEETTEEESCCCHHHHH--HCSEEEEEESS
T ss_pred HHHHHHHHHHCC--CeEEEEecCCCCccCCCCHHHHH--hCCEEEEEeCC
Confidence 344455556677 55555544432 2222222 333 79999998664
No 273
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=35.02 E-value=59 Score=17.94 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=28.0
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~ 157 (160)
.+..++......+|++++...-.. ... -...+.+-.. ..+||+++-..
T Consensus 34 ~~~~~~~l~~~~~dlii~d~~~~~-~~~---~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 34 GSTALDQLDLLQPIVILMAWPPPD-QSC---LLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHHHHCCSEEEEECSTTC-CTH---HHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEecCCCC-CCH---HHHHHHHHhccccCCCCEEEEeCC
Confidence 344555666678999999854321 111 1234555544 35898887544
No 274
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=34.65 E-value=1.6e+02 Score=22.85 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=28.3
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
.++|++++++.-+|..++..+.+.. + .+++++|+-...
T Consensus 255 ~~~vvvalSGGvDSsv~a~ll~~~~---G--~~v~~v~vd~g~ 292 (556)
T 3uow_A 255 DHYVIAAMSGGIDSTVAAAYTHKIF---K--ERFFGIFIDNGL 292 (556)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHH---G--GGEEEEEEECSC
T ss_pred CceEEEEcccCCCHHHHHHHHHHHh---C--CeEEEEEEecCC
Confidence 5789999999998887777665532 3 388899987543
No 275
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=34.24 E-value=37 Score=20.08 Aligned_cols=45 Identities=4% Similarity=0.023 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCC-hhhHHH-HHhhhhCCCEEEEeecCC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGD-AKDVIC-GTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~i~-~~a~~~~~dllvig~~~~ 128 (160)
.+.++..+++.| +.++...+... ....|. +.+. .+|.||+.....
T Consensus 22 AeaLekaA~~~G--~~ikVEtqgs~g~~n~Lt~~~I~--~AD~VIia~d~~ 68 (106)
T 2m1z_A 22 AQALKKGAKKMG--NLIKVETQGATGIENELTEKDVN--IGEVVIFAVDTK 68 (106)
T ss_dssp HHHHHHHHHHHT--CEEEEEEEETTEESSCCCHHHHH--HCSEEEEEESSC
T ss_pred HHHHHHHHHHCC--CEEEEEEecCccccCCCCHHHHh--hCCEEEEecccc
Confidence 345556666777 55555544432 222221 2333 899999987643
No 276
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=34.24 E-value=17 Score=20.79 Aligned_cols=69 Identities=16% Similarity=0.056 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
+.+.+.+...+++++ +......|+.+..= .-...++|++|......+... +......+-...++||=++
T Consensus 10 ~~l~~~i~~l~~~~~----v~~v~LFGS~arG~--~~~~SDiDl~V~~~~~~~~~~---~~~l~~~l~~~l~~~vDlv 78 (98)
T 1wot_A 10 RARREAVLSLCARHG----AVRVRVFGSVARGE--AREDSDLDLLVAFEEGRTLLD---HARLKLALEGLLGVRVDIV 78 (98)
T ss_dssp HHHHHHHHHHHHHHT----CSSCEECSHHHHTC--CCTTCCCEEEECCCSSCCHHH---HHHHHHHHHHHSCSCCEEE
T ss_pred HHHHHHHHHHHHHcC----CcEEEEEccccCCC--CCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHHcCCCEEEE
Confidence 334444555555565 45567778776653 333459999997654332221 2233344444445565554
No 277
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=34.21 E-value=92 Score=20.86 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=30.1
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+.++.+.+.+++.+++....+.+-..-+--....++...+++||+.-
T Consensus 153 ~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~ 201 (253)
T 1thf_D 153 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 201 (253)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEE
Confidence 3455666777889987775443333221122235677778788999875
No 278
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=34.17 E-value=1e+02 Score=20.43 Aligned_cols=73 Identities=10% Similarity=-0.014 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
...+.+.+.+.+++.| ..+......++.. ..+++.....++|-||+....... .... ..+....+||++
T Consensus 17 ~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~-~~~~~~~iPvV~ 87 (272)
T 3o74_A 17 YARIAKQLEQGARARG--YQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE------DDSY-RELQDKGLPVIA 87 (272)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS------CCHH-HHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc------HHHH-HHHHHcCCCEEE
Confidence 4445666667777778 6665554444443 355666777799999986433111 1122 345567899998
Q ss_pred ecCC
Q 031383 154 VKHP 157 (160)
Q Consensus 154 v~~~ 157 (160)
+-..
T Consensus 88 ~~~~ 91 (272)
T 3o74_A 88 IDRR 91 (272)
T ss_dssp ESSC
T ss_pred EccC
Confidence 8543
No 279
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=33.97 E-value=1.2e+02 Score=21.02 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec---CCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH---GYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~---~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
...+...+++.| ..+ .....+..+ .++...+..+|+|++-.. +.++++ .++.|-....+||+++-.
T Consensus 173 ~~~l~~~L~~~g--~~v--~~~a~~g~e-Al~~~~~~~~dlvl~D~~MPd~mdG~e------~~~~ir~~~~~piI~lT~ 241 (286)
T 3n0r_A 173 AADIEALVRELG--HDV--TDIAATRGE-ALEAVTRRTPGLVLADIQLADGSSGID------AVKDILGRMDVPVIFITA 241 (286)
T ss_dssp HHHHHHHHHHTT--CEE--EEEESSHHH-HHHHHHHCCCSEEEEESCCTTSCCTTT------TTHHHHHHTTCCEEEEES
T ss_pred HHHHHHHhhccC--ceE--EEEeCCHHH-HHHHHHhCCCCEEEEcCCCCCCCCHHH------HHHHHHhcCCCCEEEEeC
Confidence 344445555566 333 212234443 444555678999999743 334432 234444444899998854
No 280
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=33.79 E-value=61 Score=22.06 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=23.2
Q ss_pred hCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 116 LEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 116 ~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.++|++|+-.-+.- ...+..+.....+++...+||++|=+
T Consensus 130 ~~~D~vlIEGagGl-~~pl~~~~~~adlA~~l~~pVILV~~ 169 (242)
T 3qxc_A 130 KTYDLVIVEGAGGL-CVPITLEENMLDFALKLKAKMLLISH 169 (242)
T ss_dssp GTCSEEEEECCSCT-TCBSSSSCBHHHHHHHHTCEEEEEEC
T ss_pred hcCCEEEEECCCCc-cccccccchHHHHHHHcCCCEEEEEc
Confidence 47898888543311 11111223445688888899888743
No 281
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=33.77 E-value=1.2e+02 Score=23.40 Aligned_cols=29 Identities=21% Similarity=0.054 Sum_probs=21.7
Q ss_pred EEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 99 VVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 99 ~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.+..+.-...+.+.+++.++|+++-++++
T Consensus 420 ~v~~~~D~~~l~~~i~~~~pDLlig~s~~ 448 (523)
T 3u7q_B 420 TVYIGKDLWHLRSLVFTDKPDFMIGNSYG 448 (523)
T ss_dssp EEEESCCHHHHHHHHHHTCCSEEEECTTH
T ss_pred EEEECCCHHHHHHHHHhcCCCEEEECccH
Confidence 34556566778888888899999887654
No 282
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=33.44 E-value=28 Score=26.14 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=24.7
Q ss_pred CChhhHHHHHhh-hhCCCEEEEeecCCcccceeeccchhHHHhhcC
Q 031383 103 GDAKDVICGTVE-KLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV 147 (160)
Q Consensus 103 g~~~~~i~~~a~-~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~ 147 (160)
|+-.+.+.+.++ +.++.+|.+.+.+-..-...-.......++++.
T Consensus 113 GdDi~~v~~~~~~~~~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~ 158 (460)
T 2xdq_A 113 KMDLEGLAPKLEAEIGIPIVVARANGLDYAFTQGEDTVLAAMAARC 158 (460)
T ss_dssp TCCHHHHHHHHHHHHSSCEEEEECCTTTCCTTHHHHHHHHHHHTTC
T ss_pred hhCHHHHHHHHhhccCCcEEEEecCCccccHHHHHHHHHHHHHHHh
Confidence 666666666665 568888888766543211111223444466654
No 283
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=33.29 E-value=92 Score=19.68 Aligned_cols=61 Identities=10% Similarity=-0.014 Sum_probs=34.9
Q ss_pred cCCcceEEEEEecCC-hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 90 FQNNIHVKRVVGCGD-AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 90 ~~~~~~~~~~~~~g~-~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.| ++++....... -...|.+.+++..+|+||--....+.-.+..-|....++.-.-++|++
T Consensus 56 ~G--l~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 117 (152)
T 1b93_A 56 TG--MNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVA 117 (152)
T ss_dssp HC--CCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEE
T ss_pred hC--ceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEE
Confidence 56 77765532111 345799999999999999876521211111223344455445556654
No 284
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=33.27 E-value=1.5e+02 Score=22.14 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=37.0
Q ss_pred ce-EEEEEecC-C--hhhHHHHHhhhhCCCEEEEeecCCccc--------ceeecc--------chhHHHhhcC--CCCE
Q 031383 94 IH-VKRVVGCG-D--AKDVICGTVEKLEADTLVMGSHGYGFI--------KRALLG--------SVSDYCAKHV--KCPV 151 (160)
Q Consensus 94 ~~-~~~~~~~g-~--~~~~i~~~a~~~~~dllvig~~~~~~~--------~~~~~g--------s~~~~ll~~~--~~pV 151 (160)
++ +...+.-+ + ....|.+.+.+.++|-|++..+..... .+.+-| .....+-+.. ++||
T Consensus 269 ~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPI 348 (415)
T 3i65_A 269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPI 348 (415)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCE
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCE
Confidence 44 44445544 2 356778888899999999975432211 112223 2455666666 6899
Q ss_pred EEec
Q 031383 152 VIVK 155 (160)
Q Consensus 152 lvv~ 155 (160)
+.+-
T Consensus 349 Ig~G 352 (415)
T 3i65_A 349 IASG 352 (415)
T ss_dssp EECS
T ss_pred EEEC
Confidence 8763
No 285
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=33.25 E-value=1.1e+02 Score=20.53 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhcCCcce-EEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCE
Q 031383 75 SVNSVMNRAEAVYRNFQNNIH-VKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
...++...+.+.+++.| .. +......++.. ..+++.....++|-||+.. ..+ + -+....+||
T Consensus 24 ~~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~---------~-~~~~~~iPv 88 (277)
T 3hs3_A 24 FYAQIIDGIQEVIQKEG--YTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FTI---------P-PNFHLNTPL 88 (277)
T ss_dssp HHHHHHHHHHHHHHHTT--CEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCC---------C-TTCCCSSCE
T ss_pred hHHHHHHHHHHHHHHCC--CCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHH---------H-HHHhCCCCE
Confidence 34456666677777788 55 44333333433 3456777778999999875 111 1 235567899
Q ss_pred EEecCC
Q 031383 152 VIVKHP 157 (160)
Q Consensus 152 lvv~~~ 157 (160)
+++-..
T Consensus 89 V~~~~~ 94 (277)
T 3hs3_A 89 VMYDSA 94 (277)
T ss_dssp EEESCC
T ss_pred EEEccc
Confidence 888654
No 286
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=33.16 E-value=1.3e+02 Score=21.30 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=38.4
Q ss_pred cceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC--CCEEEec
Q 031383 93 NIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK--CPVVIVK 155 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~--~pVlvv~ 155 (160)
++++-..+...+..+ ++.+.+++.++|-+++-..- .....--+=..-+.|...++ .||++..
T Consensus 76 rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~-~~~s~~~l~~~f~~va~a~~~~lPiilYn 141 (313)
T 3dz1_A 76 SMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPP-SLRTDEQITTYFRQATEAIGDDVPWVLQD 141 (313)
T ss_dssp TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT-TCCSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHhCCCCCcEEEEe
Confidence 366655555445444 45678999999999886432 21111111124467888888 9999975
No 287
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=33.08 E-value=83 Score=21.47 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
...++|++++|-++ ..++.|.+. + +.+.+.|
T Consensus 33 ~~V~~I~~~lD~t~---~vi~eAi~~----~--adlIitH 63 (247)
T 1nmo_A 33 ETVQKIVTGVTASQ---ALLDEAVRL----G--ADAVIVH 63 (247)
T ss_dssp SBCCEEEEEEECCH---HHHHHHHHT----T--CSEEEEE
T ss_pred CccCEEEEEEcCCH---HHHHHHHhC----C--CCEEEEC
Confidence 46789999999987 457777765 5 6777777
No 288
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=33.06 E-value=1.2e+02 Score=21.10 Aligned_cols=105 Identities=11% Similarity=0.006 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceE
Q 031383 17 ESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHV 96 (160)
Q Consensus 17 ~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (160)
+-..|+++|-.++. .+ +++.-++.+.+......+.+ . + ++-+..+++.+++.| +.+
T Consensus 50 ~~e~a~~~a~~~k~-~g--a~~~k~~~~kprts~~~f~g---~-g---------------~~gl~~l~~~~~~~G--l~~ 105 (276)
T 1vs1_A 50 SWEQVREAALAVKE-AG--AHMLRGGAFKPRTSPYSFQG---L-G---------------LEGLKLLRRAGDEAG--LPV 105 (276)
T ss_dssp CHHHHHHHHHHHHH-HT--CSEEECBSSCCCSSTTSCCC---C-T---------------HHHHHHHHHHHHHHT--CCE
T ss_pred CHHHHHHHHHHHHH-hC--CCEEEeEEEeCCCChhhhcC---C-C---------------HHHHHHHHHHHHHcC--CcE
Confidence 34456666665544 35 57766677765542111111 0 0 344556666688888 887
Q ss_pred EEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 97 KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 97 ~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
-+.+..-...+.+ .+. +|++=+|++...... ..+.+. .+.+||++=...
T Consensus 106 ~te~~d~~~~~~l----~~~-vd~~kIgs~~~~n~~------ll~~~a-~~~kPV~lk~G~ 154 (276)
T 1vs1_A 106 VTEVLDPRHVETV----SRY-ADMLQIGARNMQNFP------LLREVG-RSGKPVLLKRGF 154 (276)
T ss_dssp EEECCCGGGHHHH----HHH-CSEEEECGGGTTCHH------HHHHHH-HHTCCEEEECCT
T ss_pred EEecCCHHHHHHH----HHh-CCeEEECcccccCHH------HHHHHH-ccCCeEEEcCCC
Confidence 7766654444443 444 799999987655432 112233 457888876544
No 289
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=32.96 E-value=73 Score=18.42 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=26.9
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
.+.++......+|++++...-. ...+. ...+.+-... .+||+++-..
T Consensus 39 ~~al~~~~~~~~dlvilD~~lp-~~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 39 LDAMKLIEEYNPNVVILDIEMP-GMTGL---EVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HHHHHHHHHHCCSEEEECSSCS-SSCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHhhcCCCEEEEecCCC-CCCHH---HHHHHHHHHCCCCcEEEEecC
Confidence 4445566667899999985421 11111 2344554443 4899888543
No 290
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=32.87 E-value=58 Score=21.70 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=14.4
Q ss_pred hhHHHHHhhhhCCCEEEEeec
Q 031383 106 KDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~ 126 (160)
.+.+++.+...++|+||+...
T Consensus 21 ~~~~l~~~~~~~~D~vi~~GD 41 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVGN 41 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEECCC
Confidence 456666676678888887643
No 291
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=32.79 E-value=1.3e+02 Score=21.22 Aligned_cols=64 Identities=8% Similarity=0.006 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
++.+.+.+++.| +.+-+.+..-...+.+. + .+|++=+|+....... ..+.+. .+.+||++=...
T Consensus 78 l~~l~~~~~~~G--lp~~te~~d~~~~~~l~----~-~vd~~kIgA~~~~n~~------Ll~~~a-~~~kPV~lk~G~ 141 (292)
T 1o60_A 78 LKIFQELKDTFG--VKIITDVHEIYQCQPVA----D-VVDIIQLPAFLARQTD------LVEAMA-KTGAVINVKKPQ 141 (292)
T ss_dssp HHHHHHHHHHHC--CEEEEECCSGGGHHHHH----T-TCSEEEECGGGTTCHH------HHHHHH-HTTCEEEEECCT
T ss_pred HHHHHHHHHHcC--CcEEEecCCHHHHHHHH----h-cCCEEEECcccccCHH------HHHHHH-cCCCcEEEeCCC
Confidence 334455667888 88777666544444443 3 6899999986554433 345555 678898876544
No 292
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=32.56 E-value=75 Score=18.44 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=26.2
Q ss_pred hhHHHHHhhh-hCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEec
Q 031383 106 KDVICGTVEK-LEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVK 155 (160)
Q Consensus 106 ~~~i~~~a~~-~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~ 155 (160)
..+.++..+. ..+|++++...-. ...+. ...+.+-... .+||+++-
T Consensus 48 ~~~al~~l~~~~~~dlvilD~~l~-~~~g~---~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 48 GSAFFQHRSQLSTCDLLIVSDQLV-DLSIF---SLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHHTGGGGGSCSEEEEETTCT-TSCHH---HHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCC-CCCHH---HHHHHHHhhCCCCCEEEEE
Confidence 3444556666 7899999985422 11111 2334444433 48988875
No 293
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=32.38 E-value=81 Score=18.77 Aligned_cols=65 Identities=5% Similarity=0.012 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKH 156 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~ 156 (160)
.+...+...| ..+ . ...+ ..+.++......+|+|++...-.. ..++ ...+.+-... .+||+++-.
T Consensus 22 ~l~~~L~~~g--~~v--~-~~~~-~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 22 SLKRLIKRLG--CNI--I-TFTS-PLDALEALKGTSVQLVISDMRMPE-MGGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp HHHHHHHTTT--CEE--E-EESC-HHHHHHHHTTSCCSEEEEESSCSS-SCHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHHHcC--CeE--E-EeCC-HHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCcEEEEec
Confidence 3444445556 432 2 2233 345556666778999999854221 1111 2344454443 488888743
No 294
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=32.35 E-value=67 Score=19.13 Aligned_cols=47 Identities=13% Similarity=-0.029 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
..+.++..+++.| +.++...+...-.+.-+...+-..+|+||+....
T Consensus 24 AAeaL~~aA~~~G--~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 24 AAQALEEAAVEAG--YEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp HHHHHHHHHHHTS--SEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred HHHHHHHHHHHCC--CeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 3455566667788 6555555543222221211122279999998654
No 295
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=32.24 E-value=1.1e+02 Score=20.83 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCCh--hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
++..+.+.+++.| ..+......++. ...+++.....++|-||+....... . -..+....+||+++-
T Consensus 32 ~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---~------~~~~~~~~iPvV~~~ 99 (301)
T 3miz_A 32 IVRGIQDWANANG--KTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---V------DPESGDVSIPTVMIN 99 (301)
T ss_dssp HHHHHHHHHHHTT--CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---C------CCCCTTCCCCEEEEE
T ss_pred HHHHHHHHHHHCC--CEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---H------HHHHHhCCCCEEEEC
Confidence 4555666667777 555544443343 3356677777899988886433221 1 123445678888873
No 296
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=32.21 E-value=1.2e+02 Score=20.67 Aligned_cols=70 Identities=7% Similarity=-0.017 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCCh--hhHHHHHhhhhCCCEEEEeecCCcccceeeccc-hhHHHhhcCCCCEEE
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRALLGS-VSDYCAKHVKCPVVI 153 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs-~~~~ll~~~~~pVlv 153 (160)
.+++..+.+.+++.| ..+......++. ...+++.....++|-||+....... . ..+.+.. .+||++
T Consensus 31 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~~l~~--~iPvV~ 99 (303)
T 3kke_A 31 ADMFSGVQMAASGHS--TDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD-------DDMLAAVLE--GVPAVT 99 (303)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC-------HHHHHHHHT--TSCEEE
T ss_pred HHHHHHHHHHHHHCC--CEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc-------HHHHHHHhC--CCCEEE
Confidence 345556666677777 555544444433 3456777777899999986543221 1 3344444 899998
Q ss_pred ecCC
Q 031383 154 VKHP 157 (160)
Q Consensus 154 v~~~ 157 (160)
+-..
T Consensus 100 i~~~ 103 (303)
T 3kke_A 100 INSR 103 (303)
T ss_dssp ESCC
T ss_pred ECCc
Confidence 8544
No 297
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=31.99 E-value=89 Score=19.27 Aligned_cols=61 Identities=5% Similarity=-0.066 Sum_probs=34.8
Q ss_pred cCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 90 FQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 90 ~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.| ++++...... .-...|.+.+++..+|+||--....+.-.+..-|....+..-.-++|++
T Consensus 48 ~G--l~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 109 (134)
T 2xw6_A 48 TG--LTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLA 109 (134)
T ss_dssp HC--CCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEE
T ss_pred hC--ceEEEEEecCCCCcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeE
Confidence 46 7776553221 2345799999999999999876521211112234444554444456654
No 298
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=31.99 E-value=62 Score=20.52 Aligned_cols=40 Identities=8% Similarity=0.028 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh---hCCCEEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK---LEADTLVMG 124 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~---~~~dllvig 124 (160)
.+...+++.| ..+.......|. +.|.+..++ .++|+||+.
T Consensus 31 ~l~~~l~~~G--~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVitt 73 (164)
T 3pzy_A 31 IITEWLAQQG--FSSAQPEVVADG-SPVGEALRKAIDDDVDVILTS 73 (164)
T ss_dssp HHHHHHHHTT--CEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHCC--CEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEEC
Confidence 3445666677 555544444544 655554433 479999984
No 299
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=31.94 E-value=1.1e+02 Score=22.24 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCcceEEEEE-ecC----ChhhHHHHHhhhhCCCEEE-Eee
Q 031383 80 MNRAEAVYRNFQNNIHVKRVV-GCG----DAKDVICGTVEKLEADTLV-MGS 125 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~g----~~~~~i~~~a~~~~~dllv-ig~ 125 (160)
.+++.+.+++.+ +.+.... ..+ ...+.+.+.+++.++|+|| +|.
T Consensus 58 ~~~v~~~L~~~g--~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 58 LDDLKKLLDETE--ISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp HHHHHHHHHHTT--CEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES
T ss_pred HHHHHHHHHHcC--CeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 344445555566 5543321 222 3445677778888999988 553
No 300
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=31.54 E-value=79 Score=18.39 Aligned_cols=49 Identities=4% Similarity=0.057 Sum_probs=27.6
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHP 157 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~ 157 (160)
-..+.++......+|+|++...-. +..+ -...+.+-.. ..+||+++-..
T Consensus 34 ~~~~a~~~~~~~~~dlvi~D~~l~-~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 34 NEKEALEQIDHHHPDLVILDMDII-GENS---PNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp SHHHHHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCC-CCcH---HHHHHHHHcCcccCCCCEEEEecC
Confidence 344455566677999999985421 1111 1244555555 35899888543
No 301
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=31.29 E-value=1.1e+02 Score=19.72 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=21.1
Q ss_pred CCCEEEEeecCCcccceeeccchhHHHhh-----cCCCCEEEecCC
Q 031383 117 EADTLVMGSHGYGFIKRALLGSVSDYCAK-----HVKCPVVIVKHP 157 (160)
Q Consensus 117 ~~dllvig~~~~~~~~~~~~gs~~~~ll~-----~~~~pVlvv~~~ 157 (160)
.+|+|++...- ....++ ...+.|-. ...+||+++-..
T Consensus 119 ~~dlillD~~l-p~~~G~---el~~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 119 PFDYIFMDCQM-PEMDGY---EATREIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp SCSEEEEESCC-SSSCHH---HHHHHHHHHHHTTTCCCCEEEEESS
T ss_pred CCCEEEEcCCC-CCCCHH---HHHHHHHhhhhhcCCCCcEEEEECC
Confidence 89999998542 111111 13344443 256899998654
No 302
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=31.26 E-value=1.5e+02 Score=21.46 Aligned_cols=77 Identities=9% Similarity=0.018 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
...+.+.+++|+++|++.. .+|+++|=...-..+ .--+.+.+.+.+++ + +
T Consensus 143 ~~~~eRiar~AF~~A~~rr--kkvt~v~KaNvlk~t-------------------------~glf~~~~~eva~~-~--I 192 (336)
T 1wpw_A 143 RFASERIAKVGLNFALRRR--KKVTCVHKANVMRIT-------------------------DGLFAEACRSVLKG-K--V 192 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEECTTTCTTH-------------------------HHHHHHHHHHHHTT-T--S
T ss_pred HHHHHHHHHHHHHHHHHhC--CeEEEEECCcchhhh-------------------------hHHHHHHHHHHHHh-C--c
Confidence 4668899999999999886 588888744333211 01122223333333 5 7
Q ss_pred eEEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 95 ~~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
.++..... +.+-.++..=. ..|++|..
T Consensus 193 ~~~~~~vD-~~~~~lv~~P~--~FDVivt~ 219 (336)
T 1wpw_A 193 EYSEMYVD-AAAANLVRNPQ--MFDVIVTE 219 (336)
T ss_dssp EEEEEEHH-HHHHHHHHCGG--GCSEEEEC
T ss_pred eeEEEeHH-HHHHHHhhCcc--cceEEEEc
Confidence 77776654 44444444433 78888875
No 303
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=31.11 E-value=98 Score=19.30 Aligned_cols=64 Identities=6% Similarity=-0.059 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec--CCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH--GYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~--~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
.+...+...| ..+ ....+. .+.++......+|+|++... +.+++ ...+.+-... .+||+++-..
T Consensus 22 ~l~~~L~~~g--~~v---~~~~~~-~~al~~~~~~~~dlvl~D~~lp~~~g~------~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 22 TLARGLERRG--YAV---RQAHNK-DEALKLAGAEKFEFITVXLHLGNDSGL------SLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHHHHTT--CEE---EEECSH-HHHHHHHTTSCCSEEEECSEETTEESH------HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHHCC--CEE---EEeCCH-HHHHHHHhhCCCCEEEEeccCCCccHH------HHHHHHHhcCCCCCEEEEeCC
Confidence 3444455556 332 222344 34455667788999999743 22222 1334444433 4899888543
No 304
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=31.06 E-value=1.2e+02 Score=20.35 Aligned_cols=72 Identities=8% Similarity=0.035 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEecCC--hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCGD--AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
...+...+.+.+++.| ..+.......+ ....+++.....++|-||+...... .-.-..+....+||++
T Consensus 28 ~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~ 97 (292)
T 3k4h_A 28 FPEVIRGISSFAHVEG--YALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--------DRIIQYLHEQNFPFVL 97 (292)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--------CHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC--------hHHHHHHHHCCCCEEE
Confidence 3445566666677777 44433222222 2245667777789999888533211 1123445667899988
Q ss_pred ecCC
Q 031383 154 VKHP 157 (160)
Q Consensus 154 v~~~ 157 (160)
+-..
T Consensus 98 ~~~~ 101 (292)
T 3k4h_A 98 IGKP 101 (292)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 8543
No 305
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=30.88 E-value=1.6e+02 Score=21.54 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=37.1
Q ss_pred ceEEEEEecC-C--hhhHHHHHhhhhCCCEEEEeecCCcc----------cceeecc--------chhHHHhhcC--CCC
Q 031383 94 IHVKRVVGCG-D--AKDVICGTVEKLEADTLVMGSHGYGF----------IKRALLG--------SVSDYCAKHV--KCP 150 (160)
Q Consensus 94 ~~~~~~~~~g-~--~~~~i~~~a~~~~~dllvig~~~~~~----------~~~~~~g--------s~~~~ll~~~--~~p 150 (160)
+++...+.-+ + ....+.+.+.+.++|.|++..+..+. ..+.+-| ..+..+-+.. ++|
T Consensus 221 ~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ip 300 (367)
T 3zwt_A 221 PAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVP 300 (367)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSC
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCce
Confidence 5555555554 3 34567788889999999986432111 1112222 2456667777 689
Q ss_pred EEEec
Q 031383 151 VVIVK 155 (160)
Q Consensus 151 Vlvv~ 155 (160)
|+.+-
T Consensus 301 vI~~G 305 (367)
T 3zwt_A 301 IIGVG 305 (367)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 98764
No 306
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=30.82 E-value=75 Score=22.72 Aligned_cols=59 Identities=8% Similarity=0.057 Sum_probs=38.1
Q ss_pred EEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 96 VKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 96 ~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
+--.-..+ ....++++.|++.+..+|+-.+.+........+......+.++.++||.+-
T Consensus 29 V~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaLH 88 (306)
T 3pm6_A 29 IPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITLH 88 (306)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEEE
T ss_pred EEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEEE
Confidence 33333334 788899999999999998876543222211122234556778889999775
No 307
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=30.82 E-value=1e+02 Score=22.46 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCcceEEEEE-ecC----ChhhHHHHHhhhhCCCEEE-Eee
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVV-GCG----DAKDVICGTVEKLEADTLV-MGS 125 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~-~~g----~~~~~i~~~a~~~~~dllv-ig~ 125 (160)
..+++...+++.+ +.+.... ..+ ...+.+.+.+++.++|+|| +|.
T Consensus 47 ~~~~v~~~L~~~g--~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 97 (386)
T 1rrm_A 47 VVAKVTDKMDAAG--LAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG 97 (386)
T ss_dssp HHHHHHHHHHHTT--CEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHHHcC--CeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 4555566666666 5543222 122 2455777888889999988 553
No 308
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.52 E-value=1.3e+02 Score=20.43 Aligned_cols=72 Identities=7% Similarity=0.017 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
...+++..+.+.+.+.| ..+....... .....+++.....++|-||+....... ..-..+....+||++
T Consensus 24 ~~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~ 93 (294)
T 3qk7_A 24 TFLEMISWIGIELGKRG--LDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--------FRLQYLQKQNFPFLA 93 (294)
T ss_dssp HHHHHHHHHHHHHHHTT--CEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--------HHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHHHHHHCC--CEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--------HHHHHHHhCCCCEEE
Confidence 34445666667777778 5554443332 345567788888899999986543221 122345667899998
Q ss_pred ecC
Q 031383 154 VKH 156 (160)
Q Consensus 154 v~~ 156 (160)
+-.
T Consensus 94 ~~~ 96 (294)
T 3qk7_A 94 LGR 96 (294)
T ss_dssp ESC
T ss_pred ECC
Confidence 854
No 309
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=30.48 E-value=1e+02 Score=21.36 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.0
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGY 128 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~ 128 (160)
-+.+.|++.+.++++|+|.+...-.
T Consensus 167 vp~e~iv~aa~e~~~d~VglS~l~t 191 (262)
T 1xrs_B 167 VANEDFIKKAVELEADVLLVSQTVT 191 (262)
T ss_dssp BCHHHHHHHHHHTTCSEEEEECCCC
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecC
Confidence 5888999999999999999986543
No 310
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=30.46 E-value=71 Score=23.21 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecCChh
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAK 106 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (160)
..++++.+.+.+.+ ....+..||..
T Consensus 30 ~~l~~l~~~~~~~~----~D~vliaGDl~ 54 (379)
T 3tho_B 30 KALDKVVEEAEKRE----VDLILLTGDLL 54 (379)
T ss_dssp HHHHHHHHHHHHHT----CSEEEECSCCB
T ss_pred HHHHHHHHHHHhcC----CCEEEECCCcc
Confidence 34444444444444 23445555544
No 311
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=30.22 E-value=1.2e+02 Score=19.84 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.....+.+.+.+.+++.+ ..++..-... ...+.+.+... .+|.||++..-
T Consensus 30 s~~~~l~~~~~~~~~~~g--~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~ 80 (204)
T 2amj_A 30 QLNDTLTEVADGTLRDLG--HDVRIVRADSDYDVKAEVQNFL--WADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHHHHHHHHHTT--CEEEEEESSSCCCHHHHHHHHH--HCSEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHHcC--CEEEEEeCCccccHHHHHHHHH--hCCEEEEECCc
Confidence 344455556666666666 6777665543 44556666666 89999999754
No 312
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=30.12 E-value=32 Score=25.12 Aligned_cols=12 Identities=0% Similarity=0.074 Sum_probs=8.6
Q ss_pred eEEEEEEeCCCC
Q 031383 37 TLVLLYVKPPLP 48 (160)
Q Consensus 37 ~l~~l~v~~~~~ 48 (160)
...++|+.+...
T Consensus 20 ~mrilhiSD~Hl 31 (386)
T 3av0_A 20 HMMFVHIADNHL 31 (386)
T ss_dssp CCEEEEECCCCB
T ss_pred CeEEEEEccCCC
Confidence 567888887653
No 313
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=30.11 E-value=78 Score=17.82 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=25.8
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKH 156 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~ 156 (160)
.+.+.......+|++++...-. ...+. ...+.+-.. ..+||+++-.
T Consensus 35 ~~a~~~~~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 35 LSALSIARENKPDLILMDIQLP-EISGL---EVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HHHHHHHHHHCCSEEEEESBCS-SSBHH---HHHHHHHHSTTTTTSCEEEEC-
T ss_pred HHHHHHHhcCCCCEEEEeCCCC-CCCHH---HHHHHHHcCccccCCcEEEEEC
Confidence 3444556667899999985421 11111 234445442 3589998844
No 314
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=30.00 E-value=87 Score=18.37 Aligned_cols=52 Identities=8% Similarity=-0.021 Sum_probs=30.2
Q ss_pred cCChhhHHHHHhhh-hCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 102 CGDAKDVICGTVEK-LEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 102 ~g~~~~~i~~~a~~-~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
..+..+++....+. ..+|+|++...- ....++ ...+.+-... .+||+++-..
T Consensus 51 ~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~---~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 51 TVGRAAQIVQRTDGLDAFDILMIDGAA-LDTAEL---AAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp ECCCHHHHTTCHHHHTTCSEEEEECTT-CCHHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred eCCHHHHHHHHHhcCCCCCEEEEeCCC-CCccHH---HHHHHHHHhCCCCcEEEEeCC
Confidence 34566666666665 799999998542 111111 2334454444 4888887543
No 315
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=29.87 E-value=99 Score=19.02 Aligned_cols=63 Identities=10% Similarity=-0.034 Sum_probs=35.9
Q ss_pred HHHhcCCcceEEEEEecCCh-h----hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 86 VYRNFQNNIHVKRVVGCGDA-K----DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g~~-~----~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.+++.| ++++.+...... . ..|.+..++.++|+||=-..+.... .--|...++..-.-.+|++
T Consensus 62 ~L~~~G--i~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~--~~d~~~iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 62 WLNANN--VPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKF--VHDNYVIRRTAVDSGIPLL 129 (143)
T ss_dssp HHHHTT--CCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGG--HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHcC--CeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcC--CccHHHHHHHHHHhCCCeE
Confidence 344566 666655332211 1 4699999999999999865442111 1223344455555566665
No 316
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=29.72 E-value=91 Score=18.51 Aligned_cols=100 Identities=11% Similarity=0.185 Sum_probs=56.9
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHH--------HHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYAS--------ESVN 77 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 77 (160)
..|.|.+...+ ..+....+-.++.+ ..+.++|.-.... ...+.+++..+ +..+
T Consensus 2 sqifvvfssdp---eilkeivreikrqg--vrvvllysdqdek--------------rrrerleefekqgvdvrtvedke 62 (162)
T 2l82_A 2 SQIFVVFSSDP---EILKEIVREIKRQG--VRVVLLYSDQDEK--------------RRRERLEEFEKQGVDVRTVEDKE 62 (162)
T ss_dssp CEEEEEEESCH---HHHHHHHHHHHHTT--CEEEEEECCSCHH--------------HHHHHHHHHHTTTCEEEECCSHH
T ss_pred ceEEEEecCCH---HHHHHHHHHHHhCC--eEEEEEecCchHH--------------HHHHHHHHHHHcCCceeeeccHH
Confidence 46777776655 34555555556667 5777776543211 01111111111 2345
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEee
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~ 125 (160)
++.+.+++.-++++ .+.+-..+... ......++.|++.+..+.|+-.
T Consensus 63 dfrenireiweryp-qldvvvivttddkewikdfieeakergvevfvvyn 111 (162)
T 2l82_A 63 DFRENIREIWERYP-QLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYN 111 (162)
T ss_dssp HHHHHHHHHHHHCT-TCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHhCC-CCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEec
Confidence 56666777777776 56665555444 3455677788888888887753
No 317
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=29.72 E-value=85 Score=18.17 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=27.5
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh---cCCCCEEEecCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK---HVKCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~---~~~~pVlvv~~~ 157 (160)
.++.++..+...+|+|++...-.. ..+ -...+.+-. ...+||+++-..
T Consensus 43 ~~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 43 PFDAGDLLHTVKPDVVMLDLMMVG-MDG---FSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp HHHHHHHHHHTCCSEEEEETTCTT-SCH---HHHHHHHHTSTTTTTSEEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEecccCC-CcH---HHHHHHHHhCccccCCcEEEEeCC
Confidence 344555666678999999854321 111 123455544 235899887543
No 318
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=29.66 E-value=97 Score=21.49 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=28.7
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
...+...++...+.|+|+...- +..+-. .....+-+.-.+|..+|+.
T Consensus 129 vneVtKaIekgKAqLVVIA~Dv-dPielv---~~LPaLCee~~VPY~~V~s 175 (255)
T 4a17_F 129 LNHITTLIENKQAKLVVIAHDV-DPIELV---IFLPQLCRKNDVPFAFVKG 175 (255)
T ss_dssp HHHHHHHHHTSCCSEEEEESCC-SSTHHH---HHHHHHHHHTTCCEEEESC
T ss_pred hHHHHHHHHcCCceEEEEeCCC-ChHHHH---HHHHHHHHHcCCCEEEECC
Confidence 5567777788899999997543 222111 1223455666777777764
No 319
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=29.54 E-value=58 Score=20.84 Aligned_cols=43 Identities=7% Similarity=-0.033 Sum_probs=27.4
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
|.. |.+||+....+-++..+++...+-+...+ .++.++.+.+.
T Consensus 1 M~~-mmkilii~~S~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~ 43 (199)
T 2zki_A 1 MSC-KPNILVLFYGYGSIVELAKEIGKGAEEAG--AEVKIRRVRET 43 (199)
T ss_dssp --C-CCEEEEEECCSSHHHHHHHHHHHHHHHHS--CEEEEEECCCC
T ss_pred CCC-CcEEEEEEeCccHHHHHHHHHHHHHHhCC--CEEEEEehhHh
Confidence 443 34666665445567777777777766556 68888887654
No 320
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=29.53 E-value=1.6e+02 Score=21.25 Aligned_cols=62 Identities=16% Similarity=0.019 Sum_probs=38.3
Q ss_pred ceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcc-cceeeccchhHHHhh-cCCCCEEEec
Q 031383 94 IHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGF-IKRALLGSVSDYCAK-HVKCPVVIVK 155 (160)
Q Consensus 94 ~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~-~~~~~~gs~~~~ll~-~~~~pVlvv~ 155 (160)
+++-..+...+..+ ++.+.+++.++|-+++...-... ...--+-..-+.|.. .++.||++..
T Consensus 93 vpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn 158 (344)
T 2hmc_A 93 IPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYN 158 (344)
T ss_dssp CCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEE
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 55555554445454 45678899999998887543332 111111224466888 8899999974
No 321
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=29.53 E-value=86 Score=18.18 Aligned_cols=67 Identities=6% Similarity=0.066 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcc-cceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGF-IKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~-~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
.+...+.+.| ..+. ...+ .++.++..+...+|+|++...-..+ ..++ ...+.+-... .+||+++-..
T Consensus 21 ~l~~~L~~~g--~~v~---~~~~-~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 89 (136)
T 3kto_A 21 ALSKLLSPLD--VTIQ---CFAS-AESFMRQQISDDAIGMIIEAHLEDKKDSGI---ELLETLVKRGFHLPTIVMASS 89 (136)
T ss_dssp HHHHHHTTSS--SEEE---EESS-HHHHTTSCCCTTEEEEEEETTGGGBTTHHH---HHHHHHHHTTCCCCEEEEESS
T ss_pred HHHHHHHHCC--cEEE---EeCC-HHHHHHHHhccCCCEEEEeCcCCCCCccHH---HHHHHHHhCCCCCCEEEEEcC
Confidence 3445555556 4322 2233 3445556667789999998542110 1111 1334444444 4899888543
No 322
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=29.50 E-value=78 Score=21.54 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=23.1
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~ 42 (160)
..++|++++|-++ ..++.|.+. + +.+.+.|
T Consensus 35 ~V~~I~~alD~t~---~vi~eAi~~----~--adlIitH 64 (242)
T 2yyb_A 35 TVRKVGAAVDAGE---AIFRKALEE----E--VDFLIVH 64 (242)
T ss_dssp BCCCEEEEEECSH---HHHHHHHHT----T--CSEEEEE
T ss_pred ccCEEEEEEcCCH---HHHHHHHHC----C--CCEEEEC
Confidence 5789999999986 566777765 5 6777777
No 323
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=29.39 E-value=35 Score=22.66 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEee
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~ 125 (160)
...+.+.+++.| ..+..........+.+.+..+ ++|.|+++.
T Consensus 46 ~~s~~~a~~~lG--~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~G 87 (206)
T 3l4e_A 46 VEAGKKALESLG--LLVEELDIATESLGEITTKLR--KNDFIYVTG 87 (206)
T ss_dssp HHHHHHHHHHTT--CEEEECCTTTSCHHHHHHHHH--HSSEEEECC
T ss_pred HHHHHHHHHHcC--CeEEEEEecCCChHHHHHHHH--hCCEEEECC
Confidence 344455566677 544432222223344445555 789999986
No 324
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=29.18 E-value=1.4e+02 Score=20.45 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHH
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDY 142 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ 142 (160)
.+..+..++.| .+.-..+-.+++.+.+..+.. ..|+|.+.+-..+.-.+.|.....++
T Consensus 124 ~~~i~~ir~~G--~k~Gvalnp~Tp~e~l~~~l~--~vD~VlvMsV~PGfgGQ~fi~~~l~K 181 (246)
T 3inp_A 124 DRSLQLIKSFG--IQAGLALNPATGIDCLKYVES--NIDRVLIMSVNPGFGGQKFIPAMLDK 181 (246)
T ss_dssp HHHHHHHHTTT--SEEEEEECTTCCSGGGTTTGG--GCSEEEEECSCTTC--CCCCTTHHHH
T ss_pred HHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHh--cCCEEEEeeecCCCCCcccchHHHHH
Confidence 34445556677 665555555567777766666 68888776543333223344444433
No 325
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=29.17 E-value=1.4e+02 Score=20.54 Aligned_cols=50 Identities=6% Similarity=-0.007 Sum_probs=36.3
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+.|.+.+++.++|+|+.-....+...+...+..+....+...++++..
T Consensus 133 ~~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 182 (270)
T 3dfi_A 133 IREDIESMIAECDPTLVLTCVAIGKHPDHKATRDATLLAARERGIPLRLW 182 (270)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCChhHHHHHHHHHHHHHHcCCCeeEe
Confidence 44567778889999999997555566666666767777777777777654
No 326
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=29.13 E-value=1.8e+02 Score=21.77 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=20.2
Q ss_pred EEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 99 VVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 99 ~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
.+..+.-...+.+.+++.++|+++-+.+
T Consensus 367 ~v~~~~d~~~l~~~i~~~~pDl~ig~~~ 394 (458)
T 1mio_B 367 KVKVEGDFFDVHQWIKNEGVDLLISNTY 394 (458)
T ss_dssp EEEESCBHHHHHHHHHHSCCSEEEESGG
T ss_pred EEEECCCHHHHHHHHHhcCCCEEEeCcc
Confidence 4555545556888888899999996644
No 327
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=29.04 E-value=77 Score=18.87 Aligned_cols=35 Identities=3% Similarity=-0.006 Sum_probs=17.4
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
.+++++.-.+ ......++..... . .+.++.+++..
T Consensus 4 ~~~vlIiGaG-~~g~~l~~~l~~~----~---g~~vvg~~d~~ 38 (141)
T 3nkl_A 4 KKKVLIYGAG-SAGLQLANMLRQG----K---EFHPIAFIDDD 38 (141)
T ss_dssp CEEEEEECCS-HHHHHHHHHHHHS----S---SEEEEEEECSC
T ss_pred CCEEEEECCC-HHHHHHHHHHHhC----C---CcEEEEEEECC
Confidence 4566654443 3444444443321 2 46667777654
No 328
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=28.96 E-value=58 Score=24.69 Aligned_cols=39 Identities=13% Similarity=0.011 Sum_probs=28.3
Q ss_pred HHHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 85 AVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
+.+.+.| + +.+++-| -..+++++.|+++++.|++.|.+.
T Consensus 421 ~~aa~aG--v--~aIiQPGGSiRD~evI~aane~giaMvfTG~Rh 461 (464)
T 1zcz_A 421 EILAQAG--V--KAVVAPLGSIRDEEVIEKARELGITFYKAPSRV 461 (464)
T ss_dssp HHHHHTT--C--CEEEECCCCTTHHHHHHHHHHHTCEEEECSSCC
T ss_pred HHHHHhC--C--eEEEcCCCCcCcHHHHHHHHHcCCeEEEccccc
Confidence 3445566 4 4455554 457799999999999999999764
No 329
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=28.96 E-value=51 Score=19.49 Aligned_cols=43 Identities=9% Similarity=0.245 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCcceEEEEEecCC-hhhHHHH-HhhhhCCCEEEEeecC
Q 031383 81 NRAEAVYRNFQNNIHVKRVVGCGD-AKDVICG-TVEKLEADTLVMGSHG 127 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~i~~-~a~~~~~dllvig~~~ 127 (160)
+.++...++.| +.++...+... ....|.. .+. .+|+||+....
T Consensus 23 eaL~~aA~~~G--~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d~ 67 (106)
T 2r4q_A 23 DALKEKAKELG--VEIKVETNGSSGIKHKLTAQEIE--DAPAIIVAADK 67 (106)
T ss_dssp HHHHHHHHHHT--CCEEEEEEETTEEESCCCHHHHH--HCSCEEEEESS
T ss_pred HHHHHHHHHCC--CeEEEEecCCCCccCCCCHHHHH--hCCEEEEEeCC
Confidence 34445555677 55444444432 2222222 233 78999988654
No 330
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=28.63 E-value=82 Score=18.80 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=26.9
Q ss_pred hhHHHHHhhhhCCCEEEEeec--CCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 106 KDVICGTVEKLEADTLVMGSH--GYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~--~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.++-++.++++.+|++++-.. +.+++ ..-+.+++..+||+++-.
T Consensus 42 g~eAl~~~~~~~~DlvllDi~mP~~~G~-------el~~~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIIDVNLDGEPSY-------PVADILAERNVPFIFATG 87 (123)
T ss_dssp HHHHHHHHHHCCSSEEEECSSSSSCCSH-------HHHHHHHHTCCSSCCBCT
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCHH-------HHHHHHHcCCCCEEEEec
Confidence 344455667789999999743 33332 223344556789888743
No 331
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=28.62 E-value=1.1e+02 Score=19.29 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=26.5
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
.+.++......+|+|++...-. ...++ ...+.+-...+.||+++-
T Consensus 48 ~~al~~~~~~~~dlvi~D~~~p-~~~g~---~~~~~l~~~~~~pii~lt 92 (205)
T 1s8n_A 48 QEAVELAELHKPDLVIMDVKMP-RRDGI---DAASEIASKRIAPIVVLT 92 (205)
T ss_dssp HHHHHHHHHHCCSEEEEESSCS-SSCHH---HHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHhhcCCCEEEEeCCCC-CCChH---HHHHHHHhcCCCCEEEEe
Confidence 3444556667899999985421 11111 244556555667988873
No 332
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.49 E-value=99 Score=18.54 Aligned_cols=48 Identities=6% Similarity=0.000 Sum_probs=26.6
Q ss_pred hhHHHHHhhhh--CCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecCC
Q 031383 106 KDVICGTVEKL--EADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~--~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~~ 157 (160)
.++.++...+. .+|+|++...-.. ..++ ...+.|-...+ +||+++-..
T Consensus 70 ~~~al~~l~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 70 GEEAVIKYKNHYPNIDIVTLXITMPK-MDGI---TCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHHHHHHHHGGGCCEEEECSSCSS-SCHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHHhcCCCCCEEEEeccCCC-ccHH---HHHHHHHhhCCCCcEEEEecc
Confidence 34444555556 7899999854221 1111 23445544444 899888543
No 333
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=28.31 E-value=1.1e+02 Score=22.44 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecC----ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCG----DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++.+.+++ + +.+......+ ...+.+.+.+++.++|.||-= -|.+- ..++..+.....+|++.|
T Consensus 67 ~~~~v~~~L~~-g--~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIav-GGGs~------~D~AK~iA~~~~~p~i~I 136 (387)
T 3uhj_A 67 LSERIGKSCGD-S--LDIRFERFGGECCTSEIERVRKVAIEHGSDILVGV-GGGKT------ADTAKIVAIDTGARIVIA 136 (387)
T ss_dssp HHHHC-------C--CEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEE-SSHHH------HHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHc-C--CCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEe-CCcHH------HHHHHHHHHhcCCCEEEe
Confidence 45566666667 7 6663333444 344466677788899976542 22111 223444444557999999
Q ss_pred cCCC
Q 031383 155 KHPE 158 (160)
Q Consensus 155 ~~~~ 158 (160)
|...
T Consensus 137 PTTa 140 (387)
T 3uhj_A 137 PTIA 140 (387)
T ss_dssp CSSC
T ss_pred cCcc
Confidence 8754
No 334
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=28.30 E-value=1.2e+02 Score=19.62 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=22.5
Q ss_pred HHHHHHh---cCCcceEEEEEecCChhhHHHHHhhh----hCCCEEEEe
Q 031383 83 AEAVYRN---FQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (160)
Q Consensus 83 ~~~~~~~---~~~~~~~~~~~~~g~~~~~i~~~a~~----~~~dllvig 124 (160)
+...+++ .| ..+......+|..+.|.+..++ .++|+||+.
T Consensus 39 L~~~L~~~~~~G--~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 39 LKDLVQDPSLLG--GTISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp HHHHHHCTTTTC--CEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHhchhcCC--cEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 3444555 56 6655555555554544443332 379999884
No 335
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=28.09 E-value=91 Score=17.98 Aligned_cols=48 Identities=6% Similarity=-0.110 Sum_probs=27.5
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~~ 157 (160)
.++.++..+...+|+|++...-.. ..++ ...+.+-...+ +||+++-..
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 40 GEEGERLFGLHAPDVIITDIRMPK-LGGL---EMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCcEEEEecC
Confidence 344555666779999999854221 1111 23445544444 788887544
No 336
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=27.69 E-value=1.2e+02 Score=20.17 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=30.4
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+..+.+.+.+++.++....++.+-..-.--.....+.+.+++||+..
T Consensus 155 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~ 202 (252)
T 1ka9_F 155 VEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIAS 202 (252)
T ss_dssp HHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHcCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEe
Confidence 456677777899988876444333221111235677888889999875
No 337
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=27.64 E-value=1e+02 Score=18.30 Aligned_cols=48 Identities=6% Similarity=-0.085 Sum_probs=24.0
Q ss_pred hhHHHHHhhh-hCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 106 KDVICGTVEK-LEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~-~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
..+.++.... ..+|++++...-.. ..+ -...+.+-... .+||+++-..
T Consensus 38 ~~~a~~~l~~~~~~dlvi~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 38 VSDALAFLEADNTVDLILLDVNLPD-AEA---IDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHHHHTTCCCSEEEECC-------C---HHHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCC-Cch---HHHHHHHHHhCCCCeEEEEeCC
Confidence 3444455555 78999999854211 111 12344554444 4888887543
No 338
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=27.48 E-value=1.7e+02 Score=21.02 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCC----hhhHHHHHhhhhCCCEEE-EeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGD----AKDVICGTVEKLEADTLV-MGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~i~~~a~~~~~dllv-ig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..+.+...+++.+ +.+...+..|. ..+.+.+.++++++|+|| +|...-.. ++..+.....+|++.
T Consensus 46 ~~~~v~~~L~~~g--~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~D--------~aK~iA~~~~~p~i~ 115 (370)
T 1jq5_A 46 AGHTIVNELKKGN--IAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLD--------TAKAVADELDAYIVI 115 (370)
T ss_dssp THHHHHHHHHTTT--CEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHH--------HHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcC--CeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHH--------HHHHHHHhcCCCEEE
Confidence 4556666666667 66644444553 344667778888999988 55322111 222222234689999
Q ss_pred ecCCC
Q 031383 154 VKHPE 158 (160)
Q Consensus 154 v~~~~ 158 (160)
||...
T Consensus 116 IPTTa 120 (370)
T 1jq5_A 116 VPTAA 120 (370)
T ss_dssp EESSC
T ss_pred ecccc
Confidence 98754
No 339
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=27.09 E-value=1.1e+02 Score=21.71 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=22.6
Q ss_pred HHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 111 GTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 111 ~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
+.....++|.||+-+...+ ..+.+.+++++||+
T Consensus 86 rvLs~~~~D~iviR~~~~~---------~~~~la~~~~vPVI 118 (304)
T 3r7f_A 86 RTLESIGVDVCVIRHSEDE---------YYEELVSQVNIPIL 118 (304)
T ss_dssp HHHHHHTCCEEEEECSSTT---------CHHHHHHHCSSCEE
T ss_pred HHHHHhcCCEEEEecCChh---------HHHHHHHhCCCCEE
Confidence 3334446899999765443 34667788999976
No 340
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=27.07 E-value=1.2e+02 Score=19.16 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=10.3
Q ss_pred hCCCEEEEeecCC
Q 031383 116 LEADTLVMGSHGY 128 (160)
Q Consensus 116 ~~~dllvig~~~~ 128 (160)
..+|.||+|+.-.
T Consensus 70 ~~aD~ii~gsP~y 82 (200)
T 2a5l_A 70 KNCAGLALGSPTR 82 (200)
T ss_dssp HTCSEEEEEEECB
T ss_pred HHCCEEEEEcChh
Confidence 3899999997643
No 341
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=26.77 E-value=1.5e+02 Score=20.14 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=49.6
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe-CCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK-PPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
.++++.++|.-+|..|+..+.+. + -++..|+.. +.......+ + ..-.+.++
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~----G--~eV~~L~~~~~~~~~s~~~--------------------h--~~~~e~a~ 56 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKN----R--FSVKFLVTMVSENEESYMY--------------------H--TINANLTD 56 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHT----T--CEEEEEEEEECC------------------------------CCSSSHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHHc----C--CeEEEEEEEcCCCCCcccc--------------------C--CccHHHHH
Confidence 47999999999898887766543 4 477666543 222110000 0 00112233
Q ss_pred HHHHhcCCcceEEEEEecCC---hhhHHHHHhhhhCCCEEEEee
Q 031383 85 AVYRNFQNNIHVKRVVGCGD---AKDVICGTVEKLEADTLVMGS 125 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~---~~~~i~~~a~~~~~dllvig~ 125 (160)
..++..| ++....-..|. ..+.+.+..+..+++.+|.|.
T Consensus 57 ~~A~~LG--Ipl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gd 98 (237)
T 3rjz_A 57 LQARALG--IPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGA 98 (237)
T ss_dssp HHHHHHT--CCEEEEEC------CHHHHHHHHTTSCCSEEECC-
T ss_pred HHHHHcC--CCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECC
Confidence 4455667 77665555542 445666666666889999885
No 342
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=26.63 E-value=76 Score=23.24 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=36.8
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEec
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
...+.+.+.+++.++|-||.-.......... ......+.+++..+|+|.+-
T Consensus 300 ~R~~~i~~~~~~~~~DGvI~~~~~~C~~~~~-~~~~~~~~~~~~giP~l~ie 350 (385)
T 3o3m_B 300 KRGSLIVDEVKKKDIDGVIFCMMKFCDPEEY-DYPLVRKDIEDSGIPTLYVE 350 (385)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEETTCHHHHH-HHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCccHh-hHHHHHHHHHHCCCCEEEEE
Confidence 5677888899999999999876655544332 23345566688899999884
No 343
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=26.56 E-value=1.5e+02 Score=20.06 Aligned_cols=45 Identities=16% Similarity=0.063 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhh--hCCCEEEEeec
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMGSH 126 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dllvig~~ 126 (160)
.+.++++...+.+ ..+...+..| ....-+..+.+ .++|.+|+|+.
T Consensus 173 ki~~lr~~~~~~~--~~~~I~vdGG-I~~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 173 RVIQVEKRLGNRR--VEKLINIDGS-MTLELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHHGGGG--GGCEEEEESS-CCHHHHHHHHHSSSCCCCEEECGG
T ss_pred HHHHHHHHHHhcC--CCceEEEECC-cCHHHHHHHHHhCCCCcEEEEeeH
Confidence 3344555555554 4555556655 33333444455 69999999964
No 344
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=26.56 E-value=91 Score=17.49 Aligned_cols=48 Identities=4% Similarity=0.071 Sum_probs=27.4
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
....++......+|++++...-.+ ..+. ...+.+-....+|++++-..
T Consensus 36 ~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 36 GAEMHQILSEYDINLVIMDINLPG-KNGL---LLARELREQANVALMFLTGR 83 (123)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCEEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCC-CCHH---HHHHHHHhCCCCcEEEEECC
Confidence 344455566778999999854211 1111 23445544456888887543
No 345
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=26.53 E-value=88 Score=19.95 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=24.0
Q ss_pred EEEEEecCC---hHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 7 RVVVAVDES---EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 7 ~Ilv~~d~s---~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
+||+..... ..+..++++..+.+. .+ .++.++.+.+
T Consensus 8 kilii~gS~r~~g~t~~la~~i~~~l~-~g--~~v~~~dl~~ 46 (193)
T 1rtt_A 8 KVLGISGSLRSGSYNSAALQEAIGLVP-PG--MSIELADISG 46 (193)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHTTCC-TT--CEEEECCCTT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcc-CC--CeEEEEeHHH
Confidence 666655432 357777777777766 45 6888887765
No 346
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=26.22 E-value=1e+02 Score=20.29 Aligned_cols=11 Identities=9% Similarity=0.302 Sum_probs=6.1
Q ss_pred hCCCEEEEeec
Q 031383 116 LEADTLVMGSH 126 (160)
Q Consensus 116 ~~~dllvig~~ 126 (160)
.++|.||+++.
T Consensus 74 ~g~d~iviaCn 84 (228)
T 2eq5_A 74 EGVDAIIISCA 84 (228)
T ss_dssp TTCSEEEECST
T ss_pred CCCCEEEEeCC
Confidence 35566666554
No 347
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=26.19 E-value=1.8e+02 Score=20.87 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=20.2
Q ss_pred CCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 117 EADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 117 ~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.+|.||+-+... ...+.+.+++++||+
T Consensus 100 ~~D~iviR~~~~---------~~~~~lA~~~~vPVI 126 (328)
T 3grf_A 100 MVDICTARLATK---------EMMREMAQHASVPCI 126 (328)
T ss_dssp TCSEEEEECSSH---------HHHHHHHHHCSSCEE
T ss_pred hCCEEEEecCCh---------hHHHHHHHhCCCCEE
Confidence 489999975543 245778889999986
No 348
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=26.18 E-value=1.6e+02 Score=20.05 Aligned_cols=47 Identities=15% Similarity=-0.014 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCCh-----------hhHHHHHhhhhCCCEEEEeecCCc
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDA-----------KDVICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~~i~~~a~~~~~dllvig~~~~~ 129 (160)
+.+.+.+.+++.| +.++..-...-+ ...+.+... .+|.||+++.-.+
T Consensus 53 La~~~~~~l~~~g--~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~--~AD~iI~~sP~Yn 110 (247)
T 2q62_A 53 LAEEARRLLEFFG--AEVKVFDPSGLPLPDAAPVSHPKVQELRELSI--WSEGQVWVSPERH 110 (247)
T ss_dssp HHHHHHHHHHHTT--CEEEECCCTTCCCTTSSCTTSHHHHHHHHHHH--HCSEEEEEEECSS
T ss_pred HHHHHHHHHhhCC--CEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHH--HCCEEEEEeCCCC
Confidence 3444444444556 666554333211 455666666 8999999976543
No 349
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=26.00 E-value=1.6e+02 Score=19.98 Aligned_cols=73 Identities=8% Similarity=0.063 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCC--hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGD--AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
...+++..+.+.+++.| ..+......++ ....+++.....++|-||+-..... ...-..+....+||+
T Consensus 26 f~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV 95 (295)
T 3hcw_A 26 FYINVLLGISETCNQHG--YGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN--------DPIKQMLIDESMPFI 95 (295)
T ss_dssp HHHHHHHHHHHHHHTTT--CEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT--------CHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHCC--CEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC--------hHHHHHHHhCCCCEE
Confidence 34556667777777788 44433222222 2235677777789999998633211 112344567789999
Q ss_pred EecCC
Q 031383 153 IVKHP 157 (160)
Q Consensus 153 vv~~~ 157 (160)
++-..
T Consensus 96 ~i~~~ 100 (295)
T 3hcw_A 96 VIGKP 100 (295)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 88543
No 350
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=25.99 E-value=1.4e+02 Score=19.29 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=27.2
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+.++......+|++++...-. ...++ ...+.+-....+||+++-.
T Consensus 38 ~~al~~~~~~~~dlvllD~~l~-~~~g~---~~~~~l~~~~~~~ii~lt~ 83 (230)
T 2oqr_A 38 PAALAEFDRAGADIVLLDLMLP-GMSGT---DVCKQLRARSSVPVIMVTA 83 (230)
T ss_dssp HHHHHHHHHHCCSEEEEESSCS-SSCHH---HHHHHHHHHCSCSEEEEEC
T ss_pred HHHHHHHhccCCCEEEEECCCC-CCCHH---HHHHHHHcCCCCCEEEEeC
Confidence 3444556667899999985421 11111 2345555555699998844
No 351
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=25.92 E-value=1.8e+02 Score=20.80 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=7.4
Q ss_pred hCCCEEEEeecC
Q 031383 116 LEADTLVMGSHG 127 (160)
Q Consensus 116 ~~~dllvig~~~ 127 (160)
-++|+||-|+.+
T Consensus 233 ~gID~IlgGHsH 244 (339)
T 3jyf_A 233 PGVDAIMFGHAH 244 (339)
T ss_dssp TTCCEEEECSSC
T ss_pred CCCCEEEeCCCc
Confidence 367777766443
No 352
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=25.87 E-value=1.2e+02 Score=18.77 Aligned_cols=39 Identities=10% Similarity=-0.064 Sum_probs=28.5
Q ss_pred ceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 5 ~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
|..|++...+ ..+...++.+-.++.... .+..+...+..
T Consensus 1 Migiii~sHg-~~A~gl~~~~~~i~G~~~---~i~av~~~~~~ 39 (150)
T 3ipr_A 1 MLGIVIATHG-ALSDGAKDAATVIMGATE---NIETVNLNSGD 39 (150)
T ss_dssp CCEEEEEEET-THHHHHHHHHHHHHSCCC---SEEEEEECTTC
T ss_pred CCEEEEEECc-HHHHHHHHHHHHHcCCCC---CEEEEEecCCC
Confidence 3578888888 678878888877777643 78888777544
No 353
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=25.70 E-value=1.5e+02 Score=19.61 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEe--cCChhh--HHHHHhhhhC-CCEEEEeecCCcccceeeccchhHHHhhcCCCCE
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVG--CGDAKD--VICGTVEKLE-ADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~--~i~~~a~~~~-~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
.++.+.+...+++.| ..+..... .++... ..++.....+ +|-||+......... ..-..+....+||
T Consensus 16 ~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~------~~~~~~~~~~ipv 87 (276)
T 3ksm_A 16 RQVYLGAQKAADEAG--VTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLT------PSVAQYRARNIPV 87 (276)
T ss_dssp HHHHHHHHHHHHHHT--CEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTH------HHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHcC--CEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHH------HHHHHHHHCCCcE
Confidence 345555566666677 55544432 224333 3455555567 999999754322111 1123456678999
Q ss_pred EEecC
Q 031383 152 VIVKH 156 (160)
Q Consensus 152 lvv~~ 156 (160)
+++..
T Consensus 88 V~~~~ 92 (276)
T 3ksm_A 88 LVVDS 92 (276)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 99854
No 354
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=25.61 E-value=1.4e+02 Score=19.43 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=26.2
Q ss_pred HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 108 VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
+.++......+|++++...-. ...++ ...+.+-....+||+++-.
T Consensus 40 ~al~~l~~~~~dlvilD~~l~-~~~g~---~~~~~lr~~~~~~ii~lt~ 84 (238)
T 2gwr_A 40 QALTAVRELRPDLVLLDLMLP-GMNGI---DVCRVLRADSGVPIVMLTA 84 (238)
T ss_dssp GHHHHHHHHCCSEEEEESSCS-SSCHH---HHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCC-CCCHH---HHHHHHHhCCCCcEEEEeC
Confidence 334555667899999985421 11111 2345555545799998843
No 355
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=25.57 E-value=1.6e+02 Score=19.88 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=31.5
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+..+.+.+.+++.|++....+.+...-.--.....+...+++||+..
T Consensus 158 ~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~ 206 (266)
T 2w6r_A 158 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 206 (266)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEe
Confidence 3566677778899999986544333211111235667888888999875
No 356
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=25.52 E-value=72 Score=24.66 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 86 VYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.+.+.| + +.+++-| -..+++++.|+++++.|++.|.+.
T Consensus 481 ~aa~aG--v--~aIiQPGGSiRD~evI~aane~giaMvfTG~Rh 520 (523)
T 3zzm_A 481 TLAAAG--V--TAVVHPGGSVRDEEVTEAAAKAGVTLYLTGARH 520 (523)
T ss_dssp HHHHTT--C--CEEEECCCCTTHHHHHHHHHHHTCEEEECSCCC
T ss_pred HHHHcC--C--EEEECCCCCCCcHHHHHHHHHcCCeEEEcCccC
Confidence 344566 4 4455554 456699999999999999999764
No 357
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=25.49 E-value=2.3e+02 Score=21.74 Aligned_cols=30 Identities=13% Similarity=-0.108 Sum_probs=21.3
Q ss_pred EEEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 98 RVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 98 ~~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
..+..+.-...+.+.+++.++|++|-+.++
T Consensus 415 ~~v~~~~d~~~l~~~i~~~~pDLiig~~~~ 444 (519)
T 1qgu_B 415 SEVFINCDLWHFRSLMFTRQPDFMIGNSYG 444 (519)
T ss_dssp CEEEESCCHHHHHHHHHHHCCSEEEECGGG
T ss_pred CEEEECCCHHHHHHHHhhcCCCEEEECcch
Confidence 445556556667888888899999866543
No 358
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=25.40 E-value=1e+02 Score=17.53 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=32.1
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCC-CCeEEEEEEeCCCC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDT-NNTLVLLYVKPPLP 48 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~-~a~l~~l~v~~~~~ 48 (160)
.||.|++ ...+.+...++.|+......+. +.+..++.+.++..
T Consensus 17 ~YKSI~l--tsqDrtp~vI~~al~Khnl~~~~~~~y~L~Q~Lp~~k 60 (87)
T 1lfd_A 17 MYKSILV--TSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISEDH 60 (87)
T ss_dssp EEEEEEE--ETTCBHHHHHHHHHHHTTCCSSCGGGEEEEEESSSSC
T ss_pred EEEEEEE--ecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCC
Confidence 4677774 4455678899999988777654 57899999997554
No 359
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.23 E-value=1e+02 Score=17.55 Aligned_cols=19 Identities=5% Similarity=0.024 Sum_probs=8.9
Q ss_pred HHHHHhhhhCCCEEEEeec
Q 031383 108 VICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig~~ 126 (160)
...+..+..++-+||+...
T Consensus 22 ~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 22 ETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHHcCCccEEEEeCC
Confidence 3334444445555555433
No 360
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=25.11 E-value=1.3e+02 Score=21.24 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=36.8
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCccc-ce-eeccchhHHHhh--cCCCCEEEe
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFI-KR-ALLGSVSDYCAK--HVKCPVVIV 154 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~-~~-~~~gs~~~~ll~--~~~~pVlvv 154 (160)
....++++.|++.+..+|+-.+.+.... .+ ..+...+..+.+ ++++||.+-
T Consensus 32 e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValH 86 (288)
T 3q94_A 32 EWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH 86 (288)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 7888999999999999998766543222 11 134556677788 889999875
No 361
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=25.05 E-value=74 Score=22.43 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=38.0
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccce-eeccchhHHHhhcCCCCEEEec
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKR-ALLGSVSDYCAKHVKCPVVIVK 155 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~-~~~gs~~~~ll~~~~~pVlvv~ 155 (160)
....++++.|++.+..+|+-.+.+.....+ ..+...+..+..++++||.+-=
T Consensus 29 e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValHl 81 (286)
T 1gvf_A 29 ETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHL 81 (286)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEEc
Confidence 788899999999999998877655322211 2244677788888999988753
No 362
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=25.04 E-value=2.3e+02 Score=21.60 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=34.8
Q ss_pred cceEEEEEecCChhhHHHH--HhhhhCCCEEEEe-ecCCcccceeeccchh
Q 031383 93 NIHVKRVVGCGDAKDVICG--TVEKLEADTLVMG-SHGYGFIKRALLGSVS 140 (160)
Q Consensus 93 ~~~~~~~~~~g~~~~~i~~--~a~~~~~dllvig-~~~~~~~~~~~~gs~~ 140 (160)
..-+...+-.|+..+.|.+ .|.++++|.|.+= +.+.+.+.....|.+.
T Consensus 150 ~p~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~GaT~ 200 (516)
T 1xrs_A 150 GPLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGATT 200 (516)
T ss_dssp SCEEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCCS
T ss_pred CCEEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCCCCC
Confidence 3456677888999999885 4888999998665 4566666666666443
No 363
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=24.99 E-value=1.7e+02 Score=19.95 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=28.0
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
..++++|+++|.-+|..++..+.+.. + .++..+|+-.
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~~---g--~~v~av~~~~ 61 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRAL---K--ENVFALLMPT 61 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHHH---T--TSEEEEECCS
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHHc---C--CcEEEEEecC
Confidence 46899999999998888877776642 3 3778888754
No 364
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=24.77 E-value=1.8e+02 Score=20.71 Aligned_cols=106 Identities=13% Similarity=0.050 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEE
Q 031383 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (160)
Q Consensus 18 s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
...|++.|.++... + |.|.=+......+... . -..++..++...-++.+.+..+ +.+.
T Consensus 32 ~~~a~~~a~~~v~~-G--AdIIDIGgeSTrPGa~--------------~---v~~~eE~~Rv~pvI~~l~~~~~--vpiS 89 (314)
T 2vef_A 32 LEQALQQARKLIAE-G--ASMLDIGGESTRPGSS--------------Y---VEIEEEIQRVVPVIKAIRKESD--VLIS 89 (314)
T ss_dssp HHHHHHHHHHHHHT-T--CSEEEEECCC-----C--------------H---HHHHHHHHHHHHHHHHHHHHCC--CEEE
T ss_pred HHHHHHHHHHHHHC-C--CCEEEECCCcCCCCCC--------------C---CCHHHHHHHHHHHHHHHHhhCC--ceEE
Confidence 35688888877654 5 6777666654332110 0 0112333334444333333344 5554
Q ss_pred EEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 98 RVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 98 ~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
... ...++.+.|-+.++++|= .-.+.. .....-.++.+..|||++++.
T Consensus 90 IDT----~~~~Va~aAl~aGa~iIN-DVsg~~------~d~~m~~v~a~~~~~vvlmh~ 137 (314)
T 2vef_A 90 IDT----WKSQVAEAALAAGADLVN-DITGLM------GDEKMPHVVAEARAQVVIMFN 137 (314)
T ss_dssp EEC----SCHHHHHHHHHTTCCEEE-ETTTTC------SCTTHHHHHHHHTCEEEEECC
T ss_pred EeC----CCHHHHHHHHHcCCCEEE-ECCCCC------CChHHHHHHHHcCCCEEEEec
Confidence 433 334445555555777762 111111 112334577888999999853
No 365
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=24.76 E-value=48 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=13.2
Q ss_pred HHHHhhhhCCCEEEEeecCCc
Q 031383 109 ICGTVEKLEADTLVMGSHGYG 129 (160)
Q Consensus 109 i~~~a~~~~~dllvig~~~~~ 129 (160)
..+.....++|.||+++...+
T Consensus 66 ~~~~l~~~g~d~iviaCnTa~ 86 (228)
T 1jfl_A 66 TAKRLEECGADFIIMPCNTAH 86 (228)
T ss_dssp HHHHHHHHTCSEEECSCTGGG
T ss_pred HHHHHHHcCCCEEEEcCccHH
Confidence 334444567888888876543
No 366
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=24.75 E-value=1.1e+02 Score=17.68 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=24.2
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
..+.++......+|+++ ..+.+++ ...+.+-... .+||+++-..
T Consensus 51 ~~~al~~l~~~~~dlvi--~~~~~g~------~~~~~l~~~~~~~~ii~ls~~ 95 (137)
T 2pln_A 51 LEDGEYLMDIRNYDLVM--VSDKNAL------SFVSRIKEKHSSIVVLVSSDN 95 (137)
T ss_dssp HHHHHHHHHHSCCSEEE--ECSTTHH------HHHHHHHHHSTTSEEEEEESS
T ss_pred HHHHHHHHHcCCCCEEE--EcCccHH------HHHHHHHhcCCCccEEEEeCC
Confidence 34444556667899999 2222222 1334444434 6888887543
No 367
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=24.71 E-value=98 Score=17.18 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=26.9
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.+.++......+|++++...-. ...+. ...+.+-...++|++++-..
T Consensus 35 ~~a~~~~~~~~~dlvl~D~~l~-~~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 35 REALEQFEAEQPDIIILDLMLP-EIDGL---EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHHHCCSEEEECSSCS-SSCHH---HHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHHhCCCCEEEEeccCC-CCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 3344555667899999985421 11111 23444544556899888543
No 368
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=24.69 E-value=1.6e+02 Score=19.77 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
..++.+.+++.| ..+-..+--+++.+.+..+.. .+|+|.+-+.
T Consensus 95 ~~~~i~~i~~~G--~k~gv~lnp~tp~~~~~~~l~--~~D~VlvmsV 137 (231)
T 3ctl_A 95 AFRLIDEIRRHD--MKVGLILNPETPVEAMKYYIH--KADKITVMTV 137 (231)
T ss_dssp HHHHHHHHHHTT--CEEEEEECTTCCGGGGTTTGG--GCSEEEEESS
T ss_pred HHHHHHHHHHcC--CeEEEEEECCCcHHHHHHHHh--cCCEEEEeee
Confidence 345556666677 665555544577777777666 7898865443
No 369
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=24.56 E-value=77 Score=24.56 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=26.9
Q ss_pred HHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 87 YRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
+.+.| + +.+++-| -..+++++.|+++++.|++.|.+.
T Consensus 493 Aa~aG--V--~aIiQPGGSiRD~evI~aane~giaMvfTG~Rh 531 (534)
T 4ehi_A 493 ASKVG--V--KAIVEPGGSIRDDEVVKAADEYGMALYFTGVRH 531 (534)
T ss_dssp HHHTT--C--CEEEECCCCTTHHHHHHHHHHHTCEEEECSCCC
T ss_pred HHHcC--C--EEEECCCCCCccHHHHHHHHHcCCeEEEcCccC
Confidence 44455 4 4455554 456689999999999999999764
No 370
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=24.55 E-value=1.6e+02 Score=19.73 Aligned_cols=71 Identities=8% Similarity=0.128 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhc-CCcceEEEEEe--c-CChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCE
Q 031383 78 SVMNRAEAVYRNF-QNNIHVKRVVG--C-GDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 78 ~~~~~~~~~~~~~-~~~~~~~~~~~--~-g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
.+...+.+.+++. | ..+..... . .+.. ..+++.....++|-||+......... ... ..+....+||
T Consensus 26 ~~~~gi~~~a~~~~g--~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~~-~~~~~~~iPv 97 (304)
T 3gbv_A 26 DVQKGIREAVTTYSD--FNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK-----GFT-DALNELGIPY 97 (304)
T ss_dssp HHHHHHHHHHHHTGG--GCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH-----HHH-HHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHh--CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH-----HHH-HHHHHCCCeE
Confidence 3455555556655 5 44444332 2 2443 34466666789999998754322111 112 2345558999
Q ss_pred EEecC
Q 031383 152 VIVKH 156 (160)
Q Consensus 152 lvv~~ 156 (160)
+++-.
T Consensus 98 V~~~~ 102 (304)
T 3gbv_A 98 IYIDS 102 (304)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 98854
No 371
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=24.47 E-value=1.3e+02 Score=23.64 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=27.8
Q ss_pred HHHhcCCcceEEEEEecC--ChhhHHHHHhhhhCCCEEEEeecC
Q 031383 86 VYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
.+.+.| ++.+++-| -..+++++.|+++++.|+..|.+.
T Consensus 551 ~A~~aG----V~aIiQPGGSiRD~evI~aane~giaMvfTG~Rh 590 (593)
T 1g8m_A 551 RAKRIG----VQFIVAPSGSAADEVVIEACNELGITLIHTNLRL 590 (593)
T ss_dssp HHHTTT----EEEEEEECCCTTHHHHHHHHHHHTCEEEEESCCC
T ss_pred HHHHhC----CeEEECCCCCcCCHHHHHHHHHcCCeEEECCCCC
Confidence 344555 55555555 466699999999999999999764
No 372
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=24.45 E-value=1.1e+02 Score=20.37 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=12.6
Q ss_pred CCceEEEEEecCChHHHHHHH
Q 031383 3 TNERRVVVAVDESEESMHALS 23 (160)
Q Consensus 3 ~~~~~Ilv~~d~s~~s~~al~ 23 (160)
..|+.|+|.-..+..-+..+.
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt 22 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYIS 22 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHH
T ss_pred CCCcEEEEEeCCCCCCHHHHH
Confidence 357888887666555444433
No 373
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=24.44 E-value=1.6e+02 Score=19.60 Aligned_cols=37 Identities=3% Similarity=0.006 Sum_probs=24.1
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhH
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSD 141 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~ 141 (160)
..+.|.+..++.++|+|+......+...+...+..+.
T Consensus 83 ~~~~l~~~ir~~~P~~V~t~~~~d~H~DH~~~~~~v~ 119 (227)
T 1uan_A 83 QRLKLAQALRRLRPRVVFAPLEADRHPDHTAASRLAV 119 (227)
T ss_dssp HHHHHHHHHHHHCEEEEEEECSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHHH
Confidence 5667888999999999998654444444443333333
No 374
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=24.38 E-value=1e+02 Score=17.40 Aligned_cols=48 Identities=6% Similarity=-0.086 Sum_probs=26.4
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhh---cCCCCEEEecCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAK---HVKCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~---~~~~pVlvv~~~ 157 (160)
..+.++......+|++++...-. ...+. ...+.+-. ...+||+++-..
T Consensus 38 ~~~a~~~~~~~~~dlvi~D~~l~-~~~g~---~l~~~l~~~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 38 GVDALNKLQAGGYGFVISDWNMP-NMDGL---ELLKTIRAXXAMSALPVLMVTAE 88 (128)
T ss_dssp HHHHHHHHTTCCCCEEEEESCCS-SSCHH---HHHHHHHC--CCTTCCEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC-CCCHH---HHHHHHHhhcccCCCcEEEEecC
Confidence 34444566667899999985421 11111 13344443 234788887543
No 375
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=24.37 E-value=2e+02 Score=20.54 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=26.7
Q ss_pred HHHHHHhcCCcceEEEEEecCCh-hhHHHHHhhhhCCCEEEEeecC
Q 031383 83 AEAVYRNFQNNIHVKRVVGCGDA-KDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~~a~~~~~dllvig~~~ 127 (160)
++..+.+.| +++.. ..+. ..++++..++.++|++|+...+
T Consensus 55 v~~~A~~~g--Ipv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 55 VKTLALEHN--VPVYQ---PENFKSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp HHHHHHHTT--CCEEC---CSCSCSHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHcC--CCEEc---cCcCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 445666677 76531 2222 2478888899999999997654
No 376
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=24.35 E-value=1.6e+02 Score=19.66 Aligned_cols=72 Identities=11% Similarity=0.043 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
......+...+++.| ..+......++... ..++.....++|-||+......... ...+ .+....+||+++
T Consensus 18 ~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~~~-~~~~~~iPvV~~ 89 (290)
T 2fn9_A 18 VVLAETAKQRAEQLG--YEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSI-----ANVK-RAKEAGIPVFCV 89 (290)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTH-----HHHH-HHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHcC--CEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HHHH-HHHHCCCeEEEE
Confidence 345555556666677 55544433334433 3455555678999888643222110 1122 345578999888
Q ss_pred cC
Q 031383 155 KH 156 (160)
Q Consensus 155 ~~ 156 (160)
-.
T Consensus 90 ~~ 91 (290)
T 2fn9_A 90 DR 91 (290)
T ss_dssp SS
T ss_pred ec
Confidence 54
No 377
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=24.28 E-value=1.6e+02 Score=19.53 Aligned_cols=66 Identities=9% Similarity=-0.041 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.+...+...+ ..+ ....+. .+.++......+|+|++...- ....++ ...+.|-....+||+++-..
T Consensus 52 ~l~~~L~~~g--~~v---~~~~~~-~~al~~~~~~~~DlvllD~~l-p~~~G~---~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 52 VLRMDLTDAG--YVV---DHADSA-MNGLIKAREDHPDLILLDLGL-PDFDGG---DVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp HHHHHHHTTT--CEE---EEESSH-HHHHHHHHHSCCSEEEEECCS-CHHHHH---HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHCC--CEE---EEeCCH-HHHHHHHhcCCCCEEEEcCCC-CCCCHH---HHHHHHHcCCCCCEEEEECC
Confidence 3445555556 321 222343 444556667789999998542 111111 24455555556999988543
No 378
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=24.17 E-value=57 Score=21.71 Aligned_cols=9 Identities=11% Similarity=0.339 Sum_probs=3.7
Q ss_pred CCCEEEEee
Q 031383 117 EADTLVMGS 125 (160)
Q Consensus 117 ~~dllvig~ 125 (160)
++|.||+++
T Consensus 73 g~d~iviaC 81 (226)
T 2zsk_A 73 GAELIAFAA 81 (226)
T ss_dssp TCSEEEESS
T ss_pred CCCEEEECC
Confidence 344444443
No 379
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=24.16 E-value=1.7e+02 Score=19.71 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCCh--hhH---HHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCE
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDV---ICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~---i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
..+...+...+++.| ..+......++. ... +++.....++|-||+...... ....+. +....+||
T Consensus 24 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~~~~-l~~~~iPv 93 (290)
T 2rgy_A 24 GTILKQTDLELRAVH--RHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH-------DEDLDE-LHRMHPKM 93 (290)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-------HHHHHH-HHHHCSSE
T ss_pred HHHHHHHHHHHHHCC--CEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-------HHHHHH-HhhcCCCE
Confidence 345555666666677 544433222232 233 566666779999888643322 112233 34567899
Q ss_pred EEecC
Q 031383 152 VIVKH 156 (160)
Q Consensus 152 lvv~~ 156 (160)
+++..
T Consensus 94 V~~~~ 98 (290)
T 2rgy_A 94 VFLNR 98 (290)
T ss_dssp EEESS
T ss_pred EEEcc
Confidence 88854
No 380
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.15 E-value=1.1e+02 Score=17.72 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=21.6
Q ss_pred hCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCC
Q 031383 116 LEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHP 157 (160)
Q Consensus 116 ~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~ 157 (160)
..+|++++...-.. ..++ ...+.+-.. ..+||+++-..
T Consensus 61 ~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~t~~ 101 (149)
T 1k66_A 61 PRPAVILLDLNLPG-TDGR---EVLQEIKQDEVLKKIPVVIMTTS 101 (149)
T ss_dssp CCCSEEEECSCCSS-SCHH---HHHHHHTTSTTGGGSCEEEEESC
T ss_pred CCCcEEEEECCCCC-CCHH---HHHHHHHhCcccCCCeEEEEeCC
Confidence 68999999854211 1111 233445444 34899888543
No 381
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=24.10 E-value=1.6e+02 Score=19.54 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC-CcccceeeccchhHHHhhcCCCCEE
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG-YGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~-~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
....++++.++.+..+.| -.+...+. |...+.+.+.+...++|-++.-... .......-.......++++-+..++
T Consensus 19 ~~s~ell~~A~~La~~~g--~~v~av~~-G~~~~~~~~~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~V 95 (217)
T 3ih5_A 19 DVSLELLTKGRSLANELN--CQLEAVVA-GTGLKEIEKQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQIC 95 (217)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCEEEEEE-ESCCTTTHHHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHHHHHhcC--CeEEEEEE-CCCHHHHHHHHHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 444556667777766666 45555444 4335566666667799988776432 1222122233445566666666777
Q ss_pred EecC
Q 031383 153 IVKH 156 (160)
Q Consensus 153 vv~~ 156 (160)
+++.
T Consensus 96 l~g~ 99 (217)
T 3ih5_A 96 LMGA 99 (217)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7764
No 382
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=24.10 E-value=1.1e+02 Score=17.71 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=26.6
Q ss_pred ChhhHHHHHhh--hhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecCC
Q 031383 104 DAKDVICGTVE--KLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKHP 157 (160)
Q Consensus 104 ~~~~~i~~~a~--~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~~ 157 (160)
+..+.+ +... ...+|+|++...-.. ..++ ...+.+-...+ +||+++-..
T Consensus 35 ~~~~a~-~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 35 SSTEGL-RIFTENCNSIDVVITDMKMPK-LSGM---DILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp SHHHHH-HHHHHTTTTCCEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEEECT
T ss_pred CHHHHH-HHHHhCCCCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEECC
Confidence 444443 3444 568999999854221 1111 23344544444 888887544
No 383
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=24.07 E-value=1.4e+02 Score=18.77 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=18.4
Q ss_pred ceEEEEEecCChhhHHHHHhhh----hCCCEEEEe
Q 031383 94 IHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~i~~~a~~----~~~dllvig 124 (160)
..+.......|..+.|.+..++ .++|+||+.
T Consensus 44 ~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 44 AKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp EEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred cEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 6655555555555555444333 379999884
No 384
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=23.97 E-value=1.9e+02 Score=20.23 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEE
Q 031383 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (160)
Q Consensus 18 s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
...|++.|.++... + +.|.=+.-....+...+.. .++..++..--++.+ .+.+ +.+.
T Consensus 29 ~~~a~~~a~~m~~~-G--AdiIDIGgeSTRPga~~vs-----------------~eeE~~Rv~pvi~~l-~~~~--v~iS 85 (270)
T 4hb7_A 29 VETAINRVKAMIDE-G--ADIIDVGGVSTRPGHEMVT-----------------LEEELNRVLPVVEAI-VGFD--VKIS 85 (270)
T ss_dssp HHHHHHHHHHHHHT-T--CSEEEEESCCCSTTCCCCC-----------------HHHHHHHHHHHHHHH-TTSS--SEEE
T ss_pred HHHHHHHHHHHHHC-C--CCEEEECCccCCCCCCCCc-----------------hHHHHHHHHHHHHHh-hcCC--CeEE
Confidence 35688888888664 5 5665555444333322211 112222333222222 2234 5555
Q ss_pred EEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 98 RVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 98 ~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.... ..++.+.|-+.++|+| +.+...+...-.-.++.+..||+++++..
T Consensus 86 IDT~----~~~Va~~al~aGa~iI-------NDVs~g~~d~~m~~~va~~~~~~vlMH~~ 134 (270)
T 4hb7_A 86 VDTF----RSEVAEACLKLGVDMI-------NDQWAGLYDHRMFQIVAKYDAEIILMHNG 134 (270)
T ss_dssp EECS----CHHHHHHHHHHTCCEE-------EETTTTSSCTHHHHHHHHTTCEEEEECCC
T ss_pred EECC----CHHHHHHHHHhcccee-------ccccccccchhHHHHHHHcCCCeEEeccc
Confidence 4433 3344555555677765 11222222334456777888888888644
No 385
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=23.93 E-value=1.8e+02 Score=20.05 Aligned_cols=72 Identities=6% Similarity=0.031 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChhh--HHHHHhhhhC--CCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLE--ADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~--~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
..+...+...+++.| ..+......++... ..++.....+ +|-||+......... ...+ .+....+||+
T Consensus 21 ~~~~~gi~~~a~~~g--~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV 92 (332)
T 2rjo_A 21 TAFNKGAQSFAKSVG--LPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADAR-----VIVE-ACSKAGAYVT 92 (332)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHH-----HHHH-HHHHHTCEEE
T ss_pred HHHHHHHHHHHHHcC--CEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHH-----HHHH-HHHHCCCeEE
Confidence 345555566666677 55554443344432 3455555567 999888543221110 1122 3445678998
Q ss_pred EecC
Q 031383 153 IVKH 156 (160)
Q Consensus 153 vv~~ 156 (160)
++..
T Consensus 93 ~~~~ 96 (332)
T 2rjo_A 93 TIWN 96 (332)
T ss_dssp EESC
T ss_pred EECC
Confidence 8854
No 386
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=23.86 E-value=2e+02 Score=20.55 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~ 127 (160)
+.+.+.+.+.+.+ +.++..-........+..... .+|.+|+|+..
T Consensus 268 lA~~ia~~l~~~g--~~v~~~~~~~~~~~~~~~~~~--~~d~ii~g~p~ 312 (398)
T 1ycg_A 268 MAHALMDGLVAGG--CEVKLFKLSVSDRNDVIKEIL--DARAVLVGSPT 312 (398)
T ss_dssp HHHHHHHHHHHTT--CEEEEEEGGGSCHHHHHHHHH--HCSEEEEECCC
T ss_pred HHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHH--HCCEEEEECCc
Confidence 3333444445556 666655444444455555455 79999999753
No 387
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=23.79 E-value=1.5e+02 Score=18.96 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=18.8
Q ss_pred hcCCcceEEEEEecCChhhHHHHHhhh----hCCCEEEEe
Q 031383 89 NFQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (160)
Q Consensus 89 ~~~~~~~~~~~~~~g~~~~~i~~~a~~----~~~dllvig 124 (160)
+.| ..+ .....+|..+.|.+..++ .++|+||+.
T Consensus 39 ~~G--~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 39 ITP--FEV-EYRVIPDERDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp CSC--CEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred hCC--CEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 677 665 333445544444444332 279999884
No 388
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=23.60 E-value=93 Score=21.29 Aligned_cols=40 Identities=13% Similarity=0.030 Sum_probs=22.7
Q ss_pred hCCCEEEEeecCCcccceeec-cchhHHHhhcCCCCEEEecC
Q 031383 116 LEADTLVMGSHGYGFIKRALL-GSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 116 ~~~dllvig~~~~~~~~~~~~-gs~~~~ll~~~~~pVlvv~~ 156 (160)
.++|++|+-.-+.- ...+-. |.....+++....||++|=+
T Consensus 125 ~~~D~vlIEGagGl-~~pl~~~~~~~adla~~l~~pVILV~~ 165 (251)
T 3fgn_A 125 RPGRLTLVEGAGGL-LVELAEPGVTLRDVAVDVAAAALVVVT 165 (251)
T ss_dssp CTTCEEEEECSSST-TCEEETTTEEHHHHHHHTTCEEEEEEC
T ss_pred hcCCEEEEECCCCC-cCCcCcccchHHHHHHHcCCCEEEEEc
Confidence 37888888543311 111111 12445688888899888743
No 389
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=23.47 E-value=1.1e+02 Score=17.16 Aligned_cols=48 Identities=4% Similarity=-0.009 Sum_probs=27.7
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
..+.++......+|++++...-. ...+. ...+.+-...++||+++-..
T Consensus 35 ~~~~~~~~~~~~~dlvi~d~~l~-~~~g~---~~~~~l~~~~~~~ii~~s~~ 82 (122)
T 1zgz_A 35 GAGLREIMQNQSVDLILLDINLP-DENGL---MLTRALRERSTVGIILVTGR 82 (122)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCS-SSCHH---HHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCC-CCChH---HHHHHHHhcCCCCEEEEECC
Confidence 34555666677899999985421 11111 23444544445888887543
No 390
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=23.39 E-value=48 Score=27.11 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=30.7
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKH 156 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~ 156 (160)
...|.++++.+++++|++|....+.-... ....++.. .++|++++.+
T Consensus 372 ~~~l~~li~~~~~~~IaIGngtasret~~----~v~~l~~~~~~~~i~~v~v~e 421 (785)
T 3bzc_A 372 LAVLAALCAKHQVELIAIGNGTASRETDK----LAGELIKKYPGMKLTKIMVSE 421 (785)
T ss_dssp HHHHHHHHHHHTCCEEEEESSTTHHHHHH----HHHHHHHHCGGGCCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEECCCccCHHHHH----HHHHHHHhcccCCCCEEEEcC
Confidence 35788999999999999997433332222 23444443 3588888765
No 391
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=23.37 E-value=1.9e+02 Score=19.93 Aligned_cols=71 Identities=10% Similarity=-0.026 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCcceEEEE-EecCChhh--HHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRV-VGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~--~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.....++..+++.| ..+... ...++... ..++.....++|.||+......... ... ..+....+||+.+
T Consensus 20 ~~~~g~~~~~~~~g--~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~-----~~~-~~a~~~gipvV~~ 91 (316)
T 1tjy_A 20 SGGNGAQEAGKALG--IDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-----PAL-KRAMQRGVKILTW 91 (316)
T ss_dssp HHHHHHHHHHHHHT--CEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTH-----HHH-HHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhC--CEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-----HHH-HHHHHCcCEEEEe
Confidence 34444555555666 444432 12234443 3445555679999998754433211 122 2345568999988
Q ss_pred cC
Q 031383 155 KH 156 (160)
Q Consensus 155 ~~ 156 (160)
..
T Consensus 92 d~ 93 (316)
T 1tjy_A 92 DS 93 (316)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 392
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.35 E-value=64 Score=24.66 Aligned_cols=11 Identities=0% Similarity=-0.061 Sum_probs=4.3
Q ss_pred CChhhHHHHHh
Q 031383 103 GDAKDVICGTV 113 (160)
Q Consensus 103 g~~~~~i~~~a 113 (160)
|+-.+.+.+.+
T Consensus 104 GdDi~~v~~~~ 114 (511)
T 2xdq_B 104 QEDLQNFVRRA 114 (511)
T ss_dssp CCCHHHHHHHH
T ss_pred ccCHHHHHHHh
Confidence 33333444333
No 393
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=23.34 E-value=1.6e+02 Score=19.54 Aligned_cols=8 Identities=38% Similarity=0.683 Sum_probs=3.8
Q ss_pred EEEEeecC
Q 031383 120 TLVMGSHG 127 (160)
Q Consensus 120 llvig~~~ 127 (160)
..|.|.+.
T Consensus 75 ~~v~GNHD 82 (274)
T 3d03_A 75 YLIPGNHD 82 (274)
T ss_dssp EEECCTTS
T ss_pred EEECCCCC
Confidence 44445444
No 394
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=23.32 E-value=1.2e+02 Score=17.85 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=21.1
Q ss_pred hCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecCC
Q 031383 116 LEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKHP 157 (160)
Q Consensus 116 ~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~~ 157 (160)
..+|++++...- .+..++ ...+.|-.. ..+||+++-..
T Consensus 60 ~~~dlillD~~l-p~~~g~---~l~~~l~~~~~~~~~piiils~~ 100 (149)
T 1i3c_A 60 PRPNLILLDLNL-PKKDGR---EVLAEIKQNPDLKRIPVVVLTTS 100 (149)
T ss_dssp CCCSEEEECSCC-SSSCHH---HHHHHHHHCTTTTTSCEEEEESC
T ss_pred CCCCEEEEeCCC-CCCcHH---HHHHHHHhCcCcCCCeEEEEECC
Confidence 579999997542 111111 234445443 35799888543
No 395
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.22 E-value=1.9e+02 Score=20.10 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEecCChhh---HHHHHhhh-hCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKD---VICGTVEK-LEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~i~~~a~~-~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
....+.+.+.+++.| ..+......++... .|...... .++|-||+.. ..... ...-..+....+||+
T Consensus 20 ~~~~~g~~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~------~~~~~~~~~~giPvV 90 (350)
T 3h75_A 20 VSYSQFMQAAARDLG--LDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVA------PQILRLSQGSGIKLF 90 (350)
T ss_dssp HHHHHHHHHHHHHHT--CEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHH------HHHHHHHTTSCCEEE
T ss_pred HHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhH------HHHHHHHHhCCCcEE
Confidence 345555556666677 66665544445443 23334443 6999998853 21111 111234556789999
Q ss_pred EecCC
Q 031383 153 IVKHP 157 (160)
Q Consensus 153 vv~~~ 157 (160)
++-..
T Consensus 91 ~~~~~ 95 (350)
T 3h75_A 91 IVNSP 95 (350)
T ss_dssp EEESC
T ss_pred EEcCC
Confidence 98543
No 396
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=23.18 E-value=1.6e+02 Score=19.16 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=35.6
Q ss_pred cCCcceEEEEEecCC--hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 90 FQNNIHVKRVVGCGD--AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 90 ~~~~~~~~~~~~~g~--~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.| ++++... .+. -...|.+.+++..+|+||--....+.-.+..-|....++.-.-++|++
T Consensus 72 ~G--l~v~~v~-k~~eGG~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~ 133 (178)
T 1vmd_A 72 LG--LKVHRLK-SGPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVA 133 (178)
T ss_dssp HC--CCCEECS-CGGGTHHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEE
T ss_pred hC--ceeEEEe-ecCCCCCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEE
Confidence 56 7776553 221 345799999999999999876521221112234444555555566664
No 397
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=23.16 E-value=1.7e+02 Score=19.49 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEE-EecCChhhHHHHHhhhhCCCEEEEeec-CCcccceeeccchhHHHhhcCCCCE
Q 031383 74 ESVNSVMNRAEAVYRNFQNNIHVKRV-VGCGDAKDVICGTVEKLEADTLVMGSH-GYGFIKRALLGSVSDYCAKHVKCPV 151 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~i~~~a~~~~~dllvig~~-~~~~~~~~~~gs~~~~ll~~~~~pV 151 (160)
+..++.++.+.+.+++.+ ++.-.+ ...|..+...++..+ + ++|++..+ +-.....+-+..-..+-|.+...+|
T Consensus 34 eNT~~tl~la~era~e~~--Ik~iVVASssG~TA~k~~e~~~--~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V 108 (206)
T 1t57_A 34 ENTERVLELVGERADQLG--IRNFVVASVSGETALRLSEMVE--G-NIVSVTHHAGFREKGQLELEDEARDALLERGVNV 108 (206)
T ss_dssp GGHHHHHHHHHHHHHHHT--CCEEEEECSSSHHHHHHHTTCC--S-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEE
T ss_pred ccHHHHHHHHHHHHHHcC--CCEEEEEeCCCHHHHHHHHHcc--C-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEE
Confidence 566677777777777777 542222 333555555555442 3 78888744 3332334556666677777777766
Q ss_pred EE
Q 031383 152 VI 153 (160)
Q Consensus 152 lv 153 (160)
+.
T Consensus 109 ~t 110 (206)
T 1t57_A 109 YA 110 (206)
T ss_dssp EC
T ss_pred EE
Confidence 64
No 398
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=23.01 E-value=63 Score=24.28 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEE
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYV 43 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v 43 (160)
..+.+.+++|+++|++.+. .+|+++|=
T Consensus 214 ~~~eRIar~AFe~A~~r~r-kkVT~V~K 240 (427)
T 3dms_A 214 EGTERLVRKAIQYAIDNDR-KSVTLVHK 240 (427)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCC-CeEEEEEC
Confidence 5688999999999987643 47888874
No 399
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=22.97 E-value=61 Score=22.43 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=22.9
Q ss_pred EEEEEecCChhhHHHHHhhhhCCCEEEEe
Q 031383 96 VKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 96 ~~~~~~~g~~~~~i~~~a~~~~~dllvig 124 (160)
++.+...=++..++++.|.+.++|+||.-
T Consensus 38 V~~I~~alD~t~~vi~eAi~~gadlIitH 66 (267)
T 2fyw_A 38 IQRVMVALDIREETVAEAIEKGVDLIIVK 66 (267)
T ss_dssp CSEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred cCEEEEEEcCCHHHHHHHHHCCCCEEEEC
Confidence 33344444899999999999999999985
No 400
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=22.94 E-value=1.4e+02 Score=20.68 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=27.9
Q ss_pred hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 106 KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 106 ~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
...+++.++...+.|||+....... . .-.....+.....+|+..++.
T Consensus 136 ~keV~KaIekgKAkLVVIA~DadP~-e---ivk~LpaLC~k~gVPy~~V~s 182 (256)
T 3izc_H 136 LNHVVALIENKKAKLVLIANDVDPI-E---LVVFLPALCKKMGVPYAIVKG 182 (256)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCSSG-G---GTTHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHhCcceEEEEeCCCChH-H---HHHHHHHHHHhcCCCEEEECC
Confidence 5567777788899999997543221 1 111234555566666666553
No 401
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=22.94 E-value=1.8e+02 Score=19.62 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCcc-eEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 77 NSVMNRAEAVYRNFQNNI-HVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
..+...+...+++.| . .+......++.. ...++.....++|-||+........ ....+ .+....+||++
T Consensus 18 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-----~~~~~-~~~~~~iPvV~ 89 (309)
T 2fvy_A 18 SVVRKAIEQDAKAAP--DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA-----GTVIE-KARGQNVPVVF 89 (309)
T ss_dssp HHHHHHHHHHHHTCT--TEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH-----HHHHH-HHHTTTCCEEE
T ss_pred HHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh-----HHHHH-HHHHCCCcEEE
Confidence 345666667777777 4 444433333443 3455666667999998854322211 11222 34567899998
Q ss_pred ecC
Q 031383 154 VKH 156 (160)
Q Consensus 154 v~~ 156 (160)
+..
T Consensus 90 ~~~ 92 (309)
T 2fvy_A 90 FNK 92 (309)
T ss_dssp ESS
T ss_pred ecC
Confidence 854
No 402
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=22.88 E-value=1.1e+02 Score=17.18 Aligned_cols=46 Identities=11% Similarity=-0.022 Sum_probs=25.9
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc-CCCCEEEecC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH-VKCPVVIVKH 156 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~-~~~pVlvv~~ 156 (160)
.+.++......+|++++...-. ...++ ...+.+-.. ..+||+++-.
T Consensus 37 ~~a~~~~~~~~~dlvl~D~~l~-~~~g~---~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 37 LQALDIVTKERPDLVLLDMKIP-GMDGI---EILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp HHHHHHHHHHCCSEEEEESCCT-TCCHH---HHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHhccCCCEEEEecCCC-CCCHH---HHHHHHHHhCCCCCEEEEEc
Confidence 4445555667899999985421 11111 233444443 3488888754
No 403
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=22.85 E-value=2e+02 Score=20.04 Aligned_cols=67 Identities=9% Similarity=0.026 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEecCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
++++.+.+.+.+.| ..+.......+.. ..+++.....++|-||+....... ..-..+....+||+++
T Consensus 85 ~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 85 EVLTGINQVLEDTE--LQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE--------AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHTSSS--SEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH--------HHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH--------HHHHHHHhCCCCEEEE
Confidence 45666667777777 5554443333333 345566666789998886432211 1234466778999988
No 404
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=22.81 E-value=2.1e+02 Score=20.40 Aligned_cols=37 Identities=8% Similarity=-0.035 Sum_probs=18.8
Q ss_pred CCCCceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 1 m~~~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
|.++.++|||.-.+ ...... ..+ ++..+ .++.++...
T Consensus 7 m~~~~~~ili~g~g-~~~~~~-~~a---~~~~G--~~v~~~~~~ 43 (391)
T 1kjq_A 7 LRPAATRVMLLGSG-ELGKEV-AIE---CQRLG--VEVIAVDRY 43 (391)
T ss_dssp TSTTCCEEEEESCS-HHHHHH-HHH---HHTTT--CEEEEEESS
T ss_pred CCCCCCEEEEECCC-HHHHHH-HHH---HHHcC--CEEEEEECC
Confidence 45566889887443 322222 222 23345 466666544
No 405
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=22.70 E-value=1.2e+02 Score=17.65 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeec
Q 031383 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~ 126 (160)
+.+.+....++++ .+......|+.+..= .-...++|++|+...
T Consensus 19 l~~~~~~l~~~~~---~v~~v~LFGS~ArG~--~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 19 AKEIVEEVASSFP---NLEEVYIFGSRARGD--YLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHCT---TEEEEEEESHHHHSC--CCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHcC---CccEEEEEeeeecCC--CCCCCCEEEEEEecC
Confidence 3333444444452 367788888777653 233459999999864
No 406
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=22.63 E-value=1.3e+02 Score=22.31 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=35.1
Q ss_pred HHHhhhhCCCEEEEeecCCc--c--cceeeccchhHHHhhcCCCCEEEecC
Q 031383 110 CGTVEKLEADTLVMGSHGYG--F--IKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 110 ~~~a~~~~~dllvig~~~~~--~--~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
++++-+.++-+|++.+-+|. + ....-+..++++|-+...+||-.+++
T Consensus 44 I~~ll~~gakvil~SHlGRP~kG~~~~~~SL~pva~~L~~lLg~~V~f~~d 94 (387)
T 1zmr_A 44 IELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKD 94 (387)
T ss_dssp HHHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHHCCCEEEEEccCCCCCCCCcCCccCHHHHHHHHHHHhCCCCEECcc
Confidence 46677778888888776766 2 23345677888999999999988865
No 407
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=22.51 E-value=45 Score=23.29 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=5.0
Q ss_pred EEEEEeCCC
Q 031383 39 VLLYVKPPL 47 (160)
Q Consensus 39 ~~l~v~~~~ 47 (160)
.++|+-+..
T Consensus 51 ~~iy~~D~a 59 (274)
T 3uhf_A 51 EIIYYGDTA 59 (274)
T ss_dssp EEEEEECTT
T ss_pred CEEEEecCC
Confidence 456666543
No 408
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=22.48 E-value=1.7e+02 Score=19.28 Aligned_cols=80 Identities=6% Similarity=-0.012 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEE
Q 031383 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKR 98 (160)
Q Consensus 19 ~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
...++.++++|...+ ++..++|.-..... .. ...+...+...+.+.++.+.+++.| +.+-.
T Consensus 75 ~~~~~~~i~~A~~lG--a~~v~~~~g~~~~~-----------~~----~~~~~~~~~~~~~l~~l~~~a~~~g--v~l~l 135 (254)
T 3ayv_A 75 LRRLLFGLDRAAELG--ADRAVFHSGIPHGR-----------TP----EEALERALPLAEALGLVVRRARTLG--VRLLL 135 (254)
T ss_dssp HHHHHHHHHHHHHTT--CSEEEEECCCCTTC-----------CH----HHHHHTHHHHHHHTHHHHHHHHHHT--CEEEE
T ss_pred HHHHHHHHHHHHHhC--CCEEEECCCCCccc-----------cc----ccHHHHHHHHHHHHHHHHHHHhhcC--CEEEE
Confidence 456788888888889 78777763221110 00 0112223445555566666677778 65554
Q ss_pred EEecCChhhHHHHHhhhhC
Q 031383 99 VVGCGDAKDVICGTVEKLE 117 (160)
Q Consensus 99 ~~~~g~~~~~i~~~a~~~~ 117 (160)
.-..+...+.+.+.++..+
T Consensus 136 En~~~~~~~~~~~l~~~v~ 154 (254)
T 3ayv_A 136 ENSHEPHPEALRPVLEAHA 154 (254)
T ss_dssp ECSSCSSGGGTHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHhcC
Confidence 4433433444555555443
No 409
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=22.47 E-value=1.8e+02 Score=19.44 Aligned_cols=71 Identities=7% Similarity=0.026 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEEec--CChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 77 NSVMNRAEAVYRNFQNNIHVKRVVGC--GDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
.+++..+.+.+.+.| ..+...... ......+++.....++|-||+....... ..... +....+||+++
T Consensus 28 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~-~~~~~iPvV~~ 97 (289)
T 3g85_A 28 SRFLRGLQSKLAKQN--YNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYD-------LEYLN-KASLTLPIILF 97 (289)
T ss_dssp HHHHHHHHHHHHHTT--TCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHH-------HHHHH-HCCCSSCEEEE
T ss_pred HHHHHHHHHHHHHcC--CeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCccc-------HHHHH-hccCCCCEEEE
Confidence 345555666666677 443333222 2334566777777899999996432111 01111 23567999988
Q ss_pred cCC
Q 031383 155 KHP 157 (160)
Q Consensus 155 ~~~ 157 (160)
...
T Consensus 98 ~~~ 100 (289)
T 3g85_A 98 NRL 100 (289)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 410
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=22.45 E-value=2e+02 Score=19.95 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCcceEEEE--EecC-ChhhHHHHHhhhhCCCEEEEeec
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRV--VGCG-DAKDVICGTVEKLEADTLVMGSH 126 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~i~~~a~~~~~dllvig~~ 126 (160)
...+.+++.+++.| +.+... ...+ .....+++.....++|.|++...
T Consensus 154 ~~~~~~~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~ 203 (358)
T 3hut_A 154 SSAQAFRKAFELRG--GAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMA 203 (358)
T ss_dssp HHHHHHHHHHHHTT--CEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESC
T ss_pred HHHHHHHHHHHHcC--CEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEccC
Confidence 34455566666677 544322 2223 33344555555668888888754
No 411
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=22.37 E-value=2e+02 Score=19.96 Aligned_cols=65 Identities=9% Similarity=0.108 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEecC-ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEe
Q 031383 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIV 154 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv 154 (160)
..+++..+.+.+.+.| ..+......+ .....+++.....++|-||+... + ..+....+||+++
T Consensus 79 ~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~----~----------~~~~~~~iPvV~~ 142 (333)
T 3jvd_A 79 YSESLQTIQQDLKAAG--YQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV----V----------GSIAPEGIPMVQL 142 (333)
T ss_dssp HHHHHHHHHHHHHHHT--CEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC----T----------TCCC-CCSCEEEE
T ss_pred HHHHHHHHHHHHHHCC--CEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch----H----------HHHhhCCCCEEEE
Confidence 3445666666667777 5444443333 12235566666778998888643 1 1234456888877
Q ss_pred cC
Q 031383 155 KH 156 (160)
Q Consensus 155 ~~ 156 (160)
-.
T Consensus 143 ~~ 144 (333)
T 3jvd_A 143 TR 144 (333)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 412
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=22.26 E-value=67 Score=24.17 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Q 031383 16 EESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (160)
Q Consensus 16 ~~s~~al~~a~~~a~~~~~~a~l~~l~v~ 44 (160)
..+.+.+++|+++|.+.+. -+|+++|=.
T Consensus 204 ~~~eRIar~AFe~A~~r~r-kkVT~v~Ka 231 (429)
T 2d4v_A 204 EGSERLIRRTIQYALEHGK-PSVSLVHKG 231 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcCC-CeEEEEECC
Confidence 5688999999999998753 478888853
No 413
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=22.20 E-value=1.9e+02 Score=19.63 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=53.0
Q ss_pred CceEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 031383 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (160)
Q Consensus 4 ~~~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.|+..++++.|.. ..+++...+.-.... -+|.++...+.. +..++.++.+
T Consensus 7 ~~~~~~~tlGFd~--~~~vral~~~g~~~~--d~ViLv~~~~~~--------------------------~~~~~A~~~i 56 (244)
T 2wte_A 7 HMKSYFVTMGFNE--TFLLRLLNETSAQKE--DSLVIVVPSPIV--------------------------SGTRAAIESL 56 (244)
T ss_dssp -CCEEEECCCSCC--HHHHHHHHHTTCCTT--SEEEEEEESSCC--------------------------HHHHHHHHHH
T ss_pred hhhhheeccCcCh--HHHHHHHHHhCCCCC--CEEEEEeCCCcc--------------------------hhHHHHHHHH
Confidence 5788889998863 456666666644444 377776654432 5667777777
Q ss_pred HHHHHhcCCcceEEEEEecC-ChhhH---HHHHhhhhCCCEEE
Q 031383 84 EAVYRNFQNNIHVKRVVGCG-DAKDV---ICGTVEKLEADTLV 122 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g-~~~~~---i~~~a~~~~~dllv 122 (160)
++.+...| .+.++...... +..+. |.+......-+++|
T Consensus 57 ~~~l~~~~-~i~~e~~~vd~~df~~~v~~i~~~i~~~~~~iiv 98 (244)
T 2wte_A 57 RAQISRLN-YPPPRIYEIEITDFNLALSKILDIILTLPEPIIS 98 (244)
T ss_dssp HHHHHHHT-CCCEEEEEECCCSHHHHHHHHHHHHTTSCSSEEE
T ss_pred HHHHHHcC-CCceEEEEECCccHHHHHHHHHHHHhhcCCcEEE
Confidence 88887775 24666554444 55444 44444443335555
No 414
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=22.18 E-value=1.6e+02 Score=20.04 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=39.4
Q ss_pred EEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC--CCEEEecCC
Q 031383 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK--CPVVIVKHP 157 (160)
Q Consensus 96 ~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~--~pVlvv~~~ 157 (160)
+..-+.-....+..++.+. +||++|+.+-..+.+...... .-.+++.+.+ +-|++....
T Consensus 56 fsipvilakeydkalklvn--dcdiliinsvpatsvqeatin-nykklldnikpsirvvvyqhd 116 (401)
T 1xv5_A 56 FSIPVILAKEYDKALKLVN--DCDILIINSVPATSVQEATIN-NYKKLLDNIKPSIRVVVYQHD 116 (401)
T ss_dssp TCEEECTTTCHHHHHHHHT--SCSEEEEEECCBTTSCHHHHH-HHHHHHHHSCTTSEEEEEECC
T ss_pred ccceeEehhhhHHHhhhhc--cCcEEEEccCccchhHHHHHh-hHHHHHhcCCCceEEEEEecc
Confidence 3444455566777777777 999999998877777655433 3466888776 556665443
No 415
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=22.16 E-value=82 Score=26.68 Aligned_cols=49 Identities=6% Similarity=0.159 Sum_probs=30.8
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc--------CCCCEEEecCCC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH--------VKCPVVIVKHPE 158 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~--------~~~pVlvv~~~~ 158 (160)
+.|.++++.+++++|++|...+ -...|...+. .++.. .+++|++|.+..
T Consensus 568 ~~l~~li~~~~~~~IaIGn~s~--et~~l~~~l~-~~i~~~~~~~~~~~~i~~~iV~e~g 624 (1030)
T 3psf_A 568 DTLDNIIQSCQPNAIGINGPNP--KTQKFYKRLQ-EVLHKKQIVDSRGHTIPIIYVEDEV 624 (1030)
T ss_dssp HHHHHHHHHHCCSEEEECCSST--HHHHHHHHHH-HHHHHTTCBCTTSCBCCEEECCCTT
T ss_pred HHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHH-HHHHhhccccccCCCccEEEecchH
Confidence 6788899999999999996322 2222322222 22222 358999987653
No 416
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=22.09 E-value=1.8e+02 Score=19.38 Aligned_cols=71 Identities=10% Similarity=0.193 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEe--cCChh--hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEE
Q 031383 78 SVMNRAEAVYRNFQNNIHVKRVVG--CGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVI 153 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~--~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlv 153 (160)
.+...+...+++.| ..+..... .++.. ..+++.....++|-||+......... ...+ .+....+||++
T Consensus 24 ~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~-----~~~~-~~~~~~iPvV~ 95 (289)
T 3brs_A 24 VLVEGAQMAAKEYE--IKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTY-----DAAK-EIKDAGIKLIV 95 (289)
T ss_dssp HHHHHHHHHHHHHT--CEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTH-----HHHT-TTGGGTCEEEE
T ss_pred HHHHHHHHHHHHcC--CEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhH-----HHHH-HHHHCCCcEEE
Confidence 45555566666667 54444332 23332 24556566679999888644322111 1111 23345789988
Q ss_pred ecC
Q 031383 154 VKH 156 (160)
Q Consensus 154 v~~ 156 (160)
+..
T Consensus 96 ~~~ 98 (289)
T 3brs_A 96 IDS 98 (289)
T ss_dssp ESS
T ss_pred ECC
Confidence 854
No 417
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=21.98 E-value=2.2e+02 Score=20.32 Aligned_cols=59 Identities=29% Similarity=0.442 Sum_probs=36.4
Q ss_pred HHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecC---Ccccceeeccch-hHHHhhcCCCCEEEec
Q 031383 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG---YGFIKRALLGSV-SDYCAKHVKCPVVIVK 155 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~---~~~~~~~~~gs~-~~~ll~~~~~pVlvv~ 155 (160)
+.+.| +++..... +....++ + ++|.+++|+.. .+++... .|+. ..-+.++..+||+++-
T Consensus 168 L~~~g--I~vtli~D--sa~~~~m---~--~vd~VivGAd~i~~nG~v~nk-iGT~~iAl~Ak~~~vP~~V~a 230 (315)
T 3ecs_A 168 LCHLN--VPVTVVLD--AAVGYIM---E--KADLVIVGAEGVVENGGIINK-IGTNQMAVCAKAQNKPFYVVA 230 (315)
T ss_dssp HHTTT--CCEEEECG--GGHHHHG---G--GCSEEEEECSEECTTSCEEEE-TTHHHHHHHHHHTTCCEEEEC
T ss_pred HHHcC--CCEEEEeh--hHHHHHH---H--hCCEEEECceEEecCCCeeeh-hhhHHHHHHHHHhCCCEEEEe
Confidence 34567 77655543 3333333 3 89999999864 3444443 4553 4456677789999984
No 418
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=21.97 E-value=58 Score=22.59 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=13.4
Q ss_pred HHHhcCCCCCCCeEEEEEEeCCCC
Q 031383 25 CLNNLFSPDTNNTLVLLYVKPPLP 48 (160)
Q Consensus 25 a~~~a~~~~~~a~l~~l~v~~~~~ 48 (160)
-+....... ..+.++++.+...
T Consensus 15 ~l~~~~~~~--~~~ri~~iSD~H~ 36 (330)
T 3ib7_A 15 RLRAAEHPR--PDYVLLHISDTHL 36 (330)
T ss_dssp -CEECSSCC--CSEEEEEECCCCB
T ss_pred hcccccCCC--CCeEEEEEeCCcc
Confidence 333444434 5788999887764
No 419
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=21.57 E-value=1.5e+02 Score=21.86 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=25.3
Q ss_pred hCCCEEEEeecCCcccceeeccchhHHHhhcC--CCCEEEec
Q 031383 116 LEADTLVMGSHGYGFIKRALLGSVSDYCAKHV--KCPVVIVK 155 (160)
Q Consensus 116 ~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~--~~pVlvv~ 155 (160)
.++|+||.|- ++-.. +-+.|.+.-.+.+.+ .+||+++-
T Consensus 277 ~~ADLVITGE-G~~D~-QT~~GK~p~gVa~~A~~~~Pviaia 316 (371)
T 1to6_A 277 SDVDLVIVGE-GRLDR-QSLAGKAPIGVAKRTPVGVPVVAIC 316 (371)
T ss_dssp TTCSEEEECC-SEECS-TTTTTCHHHHHHTTSCTTCCEEEEE
T ss_pred cCCCEEEECC-CCCCC-CCCCCcHHHHHHHHHhcCCCEEEEe
Confidence 4899999983 22221 235677777776665 58999873
No 420
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=21.55 E-value=2e+02 Score=19.54 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCCh--hhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
....++..+.+.+++.| ..+.......+. ...+++.....++|-||+....... ..-..+....+||+
T Consensus 41 ~~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--------~~~~~l~~~~iPvV 110 (305)
T 3huu_A 41 FNSDVLNGINQACNVRG--YSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD--------PIEHLLNEFKVPYL 110 (305)
T ss_dssp HHHHHHHHHHHHHHHHT--CEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC--------HHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHCC--CEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc--------HHHHHHHHcCCCEE
Confidence 34456666667777777 444433222222 2456777777899998885432211 12234566789999
Q ss_pred EecCC
Q 031383 153 IVKHP 157 (160)
Q Consensus 153 vv~~~ 157 (160)
++-..
T Consensus 111 ~i~~~ 115 (305)
T 3huu_A 111 IVGKS 115 (305)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 88543
No 421
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=21.55 E-value=84 Score=21.76 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=20.6
Q ss_pred HHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEE
Q 031383 110 CGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVV 152 (160)
Q Consensus 110 ~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVl 152 (160)
.+...+.++|+||+.+..... ..+.|-...++||+
T Consensus 92 ~~~L~~~Gad~IVIaCNTah~--------~l~~lr~~~~iPvi 126 (268)
T 3s81_A 92 LHMLEDAGAECIVIPCNTAHY--------WFDDLQNVAKARMI 126 (268)
T ss_dssp HHHHHHTTCSEEECSCSGGGG--------GHHHHHHHCSSEEE
T ss_pred HHHHHHcCCCEEEEeCCCHHH--------HHHHHHHHCCCCEE
Confidence 344555688888887765432 12445555566665
No 422
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=21.54 E-value=1.3e+02 Score=17.42 Aligned_cols=46 Identities=7% Similarity=0.044 Sum_probs=25.6
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc---CCCCEEEecC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH---VKCPVVIVKH 156 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~---~~~pVlvv~~ 156 (160)
.+.++......+|++++...-. +..++ ...+.|-.. ..+||+++-.
T Consensus 37 ~~al~~l~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 37 EECLEALNATPPDLVLLDIMME-PMDGW---ETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp HHHHHHHHHSCCSEEEEESCCS-SSCHH---HHHHHHHHSTTTTTSCEEEEES
T ss_pred HHHHHHHhccCCCEEEEeCCCC-CCCHH---HHHHHHHcCcccCCCCEEEEEC
Confidence 4444556667899999985421 11111 133444432 3579988754
No 423
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.45 E-value=2.6e+02 Score=20.87 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=15.4
Q ss_pred HHHHhhhhCCCEEEEeecCCccc
Q 031383 109 ICGTVEKLEADTLVMGSHGYGFI 131 (160)
Q Consensus 109 i~~~a~~~~~dllvig~~~~~~~ 131 (160)
.++.++..++|++|+-+.++...
T Consensus 172 ~l~~~~~~~~DvVIIDTaG~l~~ 194 (425)
T 2ffh_A 172 VEEKARLEARDLILVDTAGRLQI 194 (425)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSC
T ss_pred HHHHHHHCCCCEEEEcCCCcccc
Confidence 44555556899999987665443
No 424
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=21.22 E-value=72 Score=23.83 Aligned_cols=30 Identities=0% Similarity=0.013 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 15 s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
...+.+.+++|+++|.+.+. -+|+++|=..
T Consensus 196 ~~~~eRiar~AFe~A~~r~r-kkVt~v~KaN 225 (409)
T 2e0c_A 196 KYKTQRITRLAIQYAIEHKR-KKVTIMHKGN 225 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcEEEEECcc
Confidence 36788999999999987753 4788887443
No 425
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=21.20 E-value=62 Score=22.28 Aligned_cols=29 Identities=7% Similarity=0.084 Sum_probs=13.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
|..-.....++...+. .. ...++|+-+..
T Consensus 10 DSGvGGltv~~~i~~~---lP---~~~~iy~~D~~ 38 (267)
T 2gzm_A 10 DSGVGGLTVAKELIRQ---LP---KERIIYLGDTA 38 (267)
T ss_dssp ESSSTTHHHHHHHHHH---CT---TSCEEEEECTT
T ss_pred eCCccHHHHHHHHHHH---CC---CCCEEEecCCC
Confidence 4444444444444444 22 22355666553
No 426
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=21.19 E-value=62 Score=22.40 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=12.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCC
Q 031383 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (160)
Q Consensus 13 d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~ 46 (160)
|..-.....++...+.. . .-.++|+-+.
T Consensus 10 DSGvGGltv~~~i~~~l---P---~~~~iy~~D~ 37 (272)
T 1zuw_A 10 DSGVGGLTVAKEIMRQL---P---KENIIYVGDT 37 (272)
T ss_dssp ESSSTTHHHHHHHHHHS---T---TCCEEEEECG
T ss_pred eCCcchHHHHHHHHHhC---C---CCcEEEeccC
Confidence 44444444555544442 2 2234566654
No 427
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=21.01 E-value=2.2e+02 Score=19.87 Aligned_cols=64 Identities=16% Similarity=0.028 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
++.+++.+++.| +.+-+.+..-...+.+ .+. +|++=+|+....... ..+.+ ..+.+||++=...
T Consensus 75 l~~l~~~~~~~G--l~~~te~~d~~~~~~l----~~~-~d~~kIga~~~~n~~------ll~~~-a~~~kPV~lk~G~ 138 (280)
T 2qkf_A 75 LKIFEKVKAEFG--IPVITDVHEPHQCQPV----AEV-CDVIQLPAFLARQTD------LVVAM-AKTGNVVNIKKPQ 138 (280)
T ss_dssp HHHHHHHHHHHC--CCEEEECCSGGGHHHH----HHH-CSEEEECGGGTTBHH------HHHHH-HHTCCEEEEECCT
T ss_pred HHHHHHHHHHcC--CcEEEecCCHHHHHHH----Hhh-CCEEEECcccccCHH------HHHHH-HcCCCcEEEECCC
Confidence 334555567788 8877766654444444 445 799999987655443 34555 4678898876544
No 428
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=20.97 E-value=1e+02 Score=19.25 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=21.8
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
+.|++.+|+.+....-+..+++.++..+ ..+..+.+-+
T Consensus 124 ~~iillTDG~~~~~~~~~~~~~~l~~~g--i~v~~igvG~ 161 (178)
T 2xgg_A 124 KLVIGMTDGESDSDFRTVRAAKEIRELG--GIVTVLAVGH 161 (178)
T ss_dssp EEEEEEESSCCCHHHHHSHHHHHHHHTT--CEEEEEECC-
T ss_pred EEEEEEcCCCCCCCccHHHHHHHHHHCC--CEEEEEEcCC
Confidence 4566667887655433444555555556 5776666643
No 429
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=20.95 E-value=96 Score=21.44 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=13.2
Q ss_pred hhhCCCEEEEe-ecCCcc
Q 031383 114 EKLEADTLVMG-SHGYGF 130 (160)
Q Consensus 114 ~~~~~dllvig-~~~~~~ 130 (160)
...++|.||+| +.+...
T Consensus 204 ~~~gadaIvLg~CT~l~~ 221 (273)
T 2xed_A 204 DLSEVDALVISCAVQMPS 221 (273)
T ss_dssp CCTTCSEEEEESSSSSCC
T ss_pred hhCCCCEEEEcCCCCcch
Confidence 34579999999 887664
No 430
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=20.88 E-value=69 Score=24.44 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=17.2
Q ss_pred CChhhHHHHHhh-hhCCCEEEEeecCCc
Q 031383 103 GDAKDVICGTVE-KLEADTLVMGSHGYG 129 (160)
Q Consensus 103 g~~~~~i~~~a~-~~~~dllvig~~~~~ 129 (160)
|+-.+.+++.++ +.++.++.+.+.+..
T Consensus 160 GdDl~~v~~~~~~~~~~pVi~v~tpgf~ 187 (492)
T 3u7q_A 160 GDDIESVSKVKGAELSKTIVPVRCEGFR 187 (492)
T ss_dssp TCCHHHHHHHHHHHHTCCEEEECCCTTS
T ss_pred hcCHHHHHHHHHHhhCCcEEEecCCCCC
Confidence 666666666554 467888877665543
No 431
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=20.88 E-value=2e+02 Score=22.13 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=31.6
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecCC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKHP 157 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~~ 157 (160)
.+......+.+.++..||.-+.. |.++..+.+.-| |||+.+-+.
T Consensus 382 ia~aa~~~a~~~~a~aIv~~T~s---------G~ta~~isr~RP~~pI~a~t~~ 426 (500)
T 1a3w_A 382 VAASAVAAVFEQKAKAIIVLSTS---------GTTPRLVSKYRPNCPIILVTRC 426 (500)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSS---------SHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCCEEEEcCC
Confidence 55566677788888877765432 567788888877 999988543
No 432
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.70 E-value=1.3e+02 Score=17.06 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=26.8
Q ss_pred hhHHHHHhhhh-CCCEEEEeecCCcccceeeccchhHHHhhcC-CCCEEEecCC
Q 031383 106 KDVICGTVEKL-EADTLVMGSHGYGFIKRALLGSVSDYCAKHV-KCPVVIVKHP 157 (160)
Q Consensus 106 ~~~i~~~a~~~-~~dllvig~~~~~~~~~~~~gs~~~~ll~~~-~~pVlvv~~~ 157 (160)
.++.++..... .+|++++...-.....++ ...+.+-... .+||+++-..
T Consensus 38 ~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 38 GAKAIEMLKSGAAIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp HHHHHHHHHTTCCCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESS
T ss_pred HHHHHHHHHcCCCCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 34444555665 899999985422111111 1334444443 4899888543
No 433
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=20.62 E-value=1.5e+02 Score=19.37 Aligned_cols=36 Identities=8% Similarity=-0.056 Sum_probs=25.3
Q ss_pred HHhcCCcceEEEEEec----------CChhhHHHHHhhhhCCCEEEEe
Q 031383 87 YRNFQNNIHVKRVVGC----------GDAKDVICGTVEKLEADTLVMG 124 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~----------g~~~~~i~~~a~~~~~dllvig 124 (160)
+++.| ++++..... ...+..++...+...+|+++-+
T Consensus 44 a~~lg--~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~ 89 (259)
T 3g3k_A 44 STHLG--FTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89 (259)
T ss_dssp HHHHT--CCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSS
T ss_pred HHHcC--CeEEEEECCCCCcCcccCCCCcchHHHHHHhcCcccEEEee
Confidence 33456 777776643 2467788888899999998754
No 434
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=20.60 E-value=57 Score=22.54 Aligned_cols=7 Identities=14% Similarity=0.672 Sum_probs=3.6
Q ss_pred EEEEeCC
Q 031383 40 LLYVKPP 46 (160)
Q Consensus 40 ~l~v~~~ 46 (160)
++|+-+.
T Consensus 40 ~iy~~D~ 46 (273)
T 2oho_A 40 IVYIGDS 46 (273)
T ss_dssp EEEEECG
T ss_pred EEEEeCC
Confidence 4555544
No 435
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=20.59 E-value=1.2e+02 Score=16.75 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=24.0
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceee
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRAL 135 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~ 135 (160)
...+-++.|++.+-|||-+.......+.+++
T Consensus 30 ~~~eAl~~A~e~~LDLVevsp~a~PPVCkIm 60 (78)
T 1tif_A 30 SKQEALEIAARRNLDLVLVAPNAKPPVCRIM 60 (78)
T ss_dssp EHHHHHHHHHHTTCEEEEEETTSSSCEEEEE
T ss_pred cHHHHHHHHHHcCCCEEEECCCCCCCEEEEe
Confidence 3456688999999999999877766666654
No 436
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=20.54 E-value=2.2e+02 Score=22.02 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=32.1
Q ss_pred ChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecC
Q 031383 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKH 156 (160)
Q Consensus 104 ~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~ 156 (160)
..+......+.+.++..||.-+.. |.++..+.+.-| |||+.+-+
T Consensus 396 aia~aa~~~A~~l~a~aIv~~T~S---------G~tA~~iSr~RP~~PIia~T~ 440 (511)
T 3gg8_A 396 AVARAAVETAECVNAAIILALTET---------GQTARLIAKYRPMQPILALSA 440 (511)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCCEEEEcC
Confidence 345556677888899988876443 567788888877 99998744
No 437
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=20.52 E-value=2.8e+02 Score=20.94 Aligned_cols=55 Identities=7% Similarity=-0.156 Sum_probs=26.5
Q ss_pred ceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 94 ~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
+.+........++++-++.. .++|++|-.-.+ .. ..-.-.++.+..|||++++..
T Consensus 270 vpISIDT~~~~VaeaAL~~~--aGa~i~INDVsg-~~------d~~m~~v~a~~g~~vVlMh~~ 324 (442)
T 3mcm_A 270 PLVSIDTRKLEVMQKILAKH--HDIIWMINDVEC-NN------IEQKAQLIAKYNKKYVIIHNL 324 (442)
T ss_dssp CEEEEECCCHHHHHHHHHHH--GGGCCEEEECCC-TT------HHHHHHHHHHHTCEEEEECC-
T ss_pred CeEEEeCCCHHHHHHHHhhC--CCCCEEEEcCCC-CC------ChHHHHHHHHhCCeEEEECCC
Confidence 44544444334444444322 367764433333 11 112235666777888887654
No 438
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=20.48 E-value=65 Score=17.73 Aligned_cols=17 Identities=6% Similarity=0.134 Sum_probs=8.1
Q ss_pred HHHHHhhhhCCCEEEEe
Q 031383 108 VICGTVEKLEADTLVMG 124 (160)
Q Consensus 108 ~i~~~a~~~~~dllvig 124 (160)
+..+..+..++.++|+.
T Consensus 18 ~v~kai~~gkaklViiA 34 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVA 34 (82)
T ss_dssp HHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHcCCeeEEEEe
Confidence 34444444455555554
No 439
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=20.43 E-value=98 Score=21.06 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=24.1
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~ 45 (160)
+.|++-+|+.+.....+..+++.++..+ ..|..+.+-.
T Consensus 127 ~~iIllTDG~~~d~~~~~~~a~~l~~~g--i~i~~iGiG~ 164 (266)
T 4hqo_A 127 QLVILMTDGVPNSKYRALEVANKLKQRN--VRLAVIGIGQ 164 (266)
T ss_dssp EEEEEEECSCCSCHHHHHHHHHHHHHTT--CEEEEEECSS
T ss_pred eEEEEEccCCCCCchHHHHHHHHHHHCC--CEEEEEecCc
Confidence 4566667887765444445555556666 6777777654
No 440
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=20.41 E-value=1.4e+02 Score=17.31 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecCC
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKHP 157 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~~ 157 (160)
.+...+...| ..+. ...+. .+.++......+|++++...-. ...++ ...+.+-....+||+++-..
T Consensus 19 ~l~~~L~~~g--~~v~---~~~~~-~~al~~~~~~~~dlvllD~~l~-~~~g~---~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 19 KLKGFLEEKG--ISID---LAYNC-EEAIGKIFSNKYDLIFLEIILS-DGDGW---TLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp HHHHHHHTTT--CEEE---EESSH-HHHHHHHHHCCCSEEEEESEET-TEEHH---HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHCC--CEEE---EECCH-HHHHHHHHhcCCCEEEEeCCCC-CCCHH---HHHHHHccCCCCCEEEEEcC
Confidence 3444445555 4322 23343 3444566667899999985421 11111 23445544447899888543
No 441
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=20.41 E-value=1.8e+02 Score=18.63 Aligned_cols=41 Identities=12% Similarity=-0.029 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCChhhHHHHH----hhhhCCCEEEEe
Q 031383 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGT----VEKLEADTLVMG 124 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~----a~~~~~dllvig 124 (160)
.+...+++.| ..+.......|..+.|.+. +++.++|+||+.
T Consensus 44 ~L~~~l~~~G--~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 44 IIKQLLIENG--HKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHTT--CEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHCC--CEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4455666778 6665554455544444433 332249999974
No 442
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=20.40 E-value=2.4e+02 Score=20.15 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=28.7
Q ss_pred hHHHHHhhhhCCCEEEEeecC--CcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 107 DVICGTVEKLEADTLVMGSHG--YGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~--~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
.+.++.+++..+|++++...- .+++ ...+.|....++||+++-.
T Consensus 39 ~eAl~~l~~~~pDlVllDi~mp~~dGl------ell~~l~~~~p~pVIvlS~ 84 (349)
T 1a2o_A 39 LVARDLIKKFNPDVLTLDVEMPRMDGL------DFLEKLMRLRPMPVVMVSS 84 (349)
T ss_dssp HHHHHHHHHHCCSEEEEECCCSSSCHH------HHHHHHHHSSCCCEEEEEC
T ss_pred HHHHHHHhccCCCEEEEECCCCCCCHH------HHHHHHHhcCCCcEEEEEC
Confidence 444456666789999998542 2222 2456676667799998854
No 443
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=20.22 E-value=1e+02 Score=21.97 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=23.7
Q ss_pred hhhCCCEEEEeecCCcccceeeccchhHHHhhcCCCCEEEecC
Q 031383 114 EKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVKCPVVIVKH 156 (160)
Q Consensus 114 ~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~~pVlvv~~ 156 (160)
-..++|+||+... . ......+++...+||++++.
T Consensus 93 lal~PDLIi~~~~--~-------~~~~~~~~~~~GiPvv~~~~ 126 (346)
T 2etv_A 93 ITLQPDVVFITYV--D-------RXTAXDIQEXTGIPVVVLSY 126 (346)
T ss_dssp HHHCCSEEEEESC--C-------HHHHHHHHHHHTSCEEEECC
T ss_pred hcCCCCEEEEeCC--c-------cchHHHHHHhcCCcEEEEec
Confidence 3458999998642 1 23456777888899999864
No 444
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=20.15 E-value=1.6e+02 Score=18.09 Aligned_cols=38 Identities=8% Similarity=-0.118 Sum_probs=27.5
Q ss_pred eEEEEEecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 6 ~~Ilv~~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
-.|++...+. .+...++.+-.++.... .+..+...+..
T Consensus 4 igiii~sHG~-~A~gl~~~~~~i~G~~~---~v~av~~~~~~ 41 (144)
T 3lfh_A 4 KFVLIITHGD-FGKGLLSGAEVIIGKQE---NVHTVGLNLGD 41 (144)
T ss_dssp EEEEEEEETT-HHHHHHHHHHHHHCCCS---SEEEEEECTTC
T ss_pred ceEEEEeCcH-HHHHHHHHHHHHcCCCC---cEEEEEccCCC
Confidence 5788888886 77777777777776643 78888776544
No 445
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=20.14 E-value=94 Score=26.89 Aligned_cols=49 Identities=6% Similarity=0.154 Sum_probs=30.8
Q ss_pred hHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhc--------CCCCEEEecCCC
Q 031383 107 DVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKH--------VKCPVVIVKHPE 158 (160)
Q Consensus 107 ~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~--------~~~pVlvv~~~~ 158 (160)
+.|.+.++.+++++|++|... .-...|...+. .++.. .+++|++|.+..
T Consensus 565 ~~l~~li~~~~~~vIaIGn~s--ret~~l~~~l~-~~i~~~~~~~~~~~~i~vviV~e~g 621 (1219)
T 3psi_A 565 DTLDNIIQSCQPNAIGINGPN--PKTQKFYKRLQ-EVLHKKQIVDSRGHTIPIIYVEDEV 621 (1219)
T ss_dssp HHHHHHHHHHCCSEEEECCSS--THHHHHHHHHH-HHHHHTTCBCSSSCBCCEEECCCTT
T ss_pred HHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHH-HHHHhhccccccCCCccEEEECchH
Confidence 678889999999999999632 21222322222 22221 358999987653
No 446
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=20.11 E-value=2.3e+02 Score=21.85 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=31.7
Q ss_pred hhhHHHHHhhhhCCCEEEEeecCCcccceeeccchhHHHhhcCC-CCEEEecC
Q 031383 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRALLGSVSDYCAKHVK-CPVVIVKH 156 (160)
Q Consensus 105 ~~~~i~~~a~~~~~dllvig~~~~~~~~~~~~gs~~~~ll~~~~-~pVlvv~~ 156 (160)
.+......+.+.++..||.-+.. |.++..+.+.-| |||+.+-+
T Consensus 381 ia~aa~~~A~~l~a~aIv~~T~S---------G~tA~~isr~RP~~pIia~T~ 424 (499)
T 3hqn_D 381 VCSSAVNSVYETKAKAMVVLSNT---------GRSARLVAKYRPNCPIVCVTT 424 (499)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcC
Confidence 44555667788889988876543 667788888887 99998744
No 447
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=20.09 E-value=49 Score=25.14 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=15.6
Q ss_pred CChhhHHHHHhh-hhCCCEEEEeecC
Q 031383 103 GDAKDVICGTVE-KLEADTLVMGSHG 127 (160)
Q Consensus 103 g~~~~~i~~~a~-~~~~dllvig~~~ 127 (160)
|+-.+.+++.++ +.+..+|.+.+.+
T Consensus 138 GdDl~~v~~~~~~~~~~pVi~v~tpg 163 (483)
T 3pdi_A 138 GDDVDAVCKAAAERFGTPVIPVDSAG 163 (483)
T ss_dssp TCCHHHHHHHHHHHHCSCEEEECCCG
T ss_pred cCCHHHHHHHHHHHhCCCEEEEeCCC
Confidence 666666666654 4677777765544
No 448
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=20.01 E-value=78 Score=21.97 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=15.8
Q ss_pred ecCChHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCC
Q 031383 12 VDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (160)
Q Consensus 12 ~d~s~~s~~al~~a~~~a~~~~~~a~l~~l~v~~~~ 47 (160)
+|..-.....++...+..- +-.++|+-+..
T Consensus 11 fDSGvGGltv~~~i~~~lP------~~~~iy~~D~a 40 (269)
T 3ist_A 11 IDSGVGGLTVVREVLKQLP------HEQVYYLGDTA 40 (269)
T ss_dssp EESSSTTHHHHHHHHHHCT------TCCEEEEECGG
T ss_pred EECCccHHHHHHHHHHHCC------CCcEEEEeCCC
Confidence 4555555556666655533 23456666543
Done!