Query 031384
Match_columns 160
No_of_seqs 76 out of 78
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 13:20:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13301 DUF4079: Protein of u 99.8 1.4E-19 3E-24 145.1 5.5 75 86-160 2-115 (175)
2 PF03188 Cytochrom_B561: Eukar 87.9 1.6 3.5E-05 31.9 5.3 71 81-155 29-99 (137)
3 PF02447 GntP_permease: GntP f 85.5 0.71 1.5E-05 42.2 2.8 59 86-149 260-320 (441)
4 PRK13681 hypothetical protein; 84.0 0.48 1E-05 30.7 0.8 17 132-148 8-24 (35)
5 PF04238 DUF420: Protein of un 83.0 3.2 6.8E-05 32.5 5.1 53 88-152 79-131 (133)
6 cd08761 Cyt_b561_CYB561D2_like 81.2 5.7 0.00012 31.1 6.0 29 123-151 90-118 (183)
7 cd08554 Cyt_b561 Eukaryotic cy 80.9 6.8 0.00015 28.8 6.0 69 83-155 32-100 (131)
8 PF03188 Cytochrom_B561: Eukar 80.7 3.6 7.8E-05 30.0 4.5 66 90-160 2-70 (137)
9 cd08760 Cyt_b561_FRRS1_like Eu 78.3 4 8.7E-05 31.9 4.3 76 69-149 50-126 (191)
10 COG2322 Predicted membrane pro 74.2 4.7 0.0001 33.9 3.9 54 86-151 118-171 (177)
11 PF13703 PepSY_TM_2: PepSY-ass 73.9 7.8 0.00017 27.2 4.5 53 94-147 23-83 (88)
12 PF03203 MerC: MerC mercury re 72.7 10 0.00022 28.2 5.0 25 86-111 36-60 (116)
13 smart00665 B561 Cytochrome b-5 68.5 20 0.00043 26.4 5.8 60 86-152 36-95 (129)
14 PF11381 DUF3185: Protein of u 61.7 9.1 0.0002 26.8 2.7 26 95-120 4-29 (59)
15 cd03496 SQR_TypeC_CybS SQR cat 60.2 6.2 0.00013 29.6 1.8 64 89-155 30-93 (104)
16 PF08611 DUF1774: Fungal prote 56.5 13 0.00027 28.5 2.9 30 86-115 50-79 (97)
17 cd08554 Cyt_b561 Eukaryotic cy 55.8 38 0.00082 24.8 5.3 67 89-159 4-70 (131)
18 smart00665 B561 Cytochrome b-5 54.1 34 0.00073 25.2 4.8 38 123-160 32-69 (129)
19 PF07477 Glyco_hydro_67C: Glyc 53.6 11 0.00024 32.6 2.4 34 59-92 105-139 (225)
20 KOG1563 Mitochondrial protein 53.1 6.3 0.00014 35.3 0.9 21 95-115 60-81 (288)
21 PF06724 DUF1206: Domain of Un 49.9 35 0.00075 23.2 4.0 54 95-148 8-62 (73)
22 PF11377 DUF3180: Protein of u 48.3 8.4 0.00018 30.0 0.9 26 91-116 30-55 (138)
23 PF00033 Cytochrom_B_N: Cytoch 48.3 23 0.0005 26.2 3.1 62 79-143 4-65 (188)
24 PF03596 Cad: Cadmium resistan 47.3 7.6 0.00016 32.2 0.5 63 61-136 109-171 (191)
25 PF08285 DPM3: Dolichol-phosph 45.7 56 0.0012 24.3 4.8 47 75-121 22-69 (91)
26 PRK10472 low affinity gluconat 43.9 14 0.0003 34.1 1.6 58 86-148 261-320 (445)
27 PF14007 YtpI: YtpI-like prote 43.4 33 0.00072 25.6 3.3 43 98-141 6-48 (89)
28 PF11241 DUF3043: Protein of u 42.5 31 0.00067 28.5 3.3 51 84-139 99-150 (170)
29 PF11027 DUF2615: Protein of u 41.8 22 0.00047 27.4 2.2 15 92-106 58-72 (103)
30 PRK11513 cytochrome b561; Prov 40.8 72 0.0016 25.3 5.1 21 121-141 38-58 (176)
31 PF03176 MMPL: MMPL family; I 40.7 24 0.00051 29.3 2.4 71 86-157 199-272 (333)
32 PF02665 Nitrate_red_gam: Nitr 40.6 38 0.00082 28.0 3.6 78 65-145 64-141 (222)
33 PF03606 DcuC: C4-dicarboxylat 39.7 1.1E+02 0.0024 27.7 6.7 63 87-154 279-341 (465)
34 TIGR02125 CytB-hydogenase Ni/F 38.9 77 0.0017 24.6 4.9 60 80-140 4-64 (211)
35 PF03649 UPF0014: Uncharacteri 38.5 84 0.0018 26.9 5.4 67 83-159 56-122 (250)
36 PRK10034 fructuronate transpor 38.5 21 0.00045 32.9 1.9 60 85-149 259-320 (447)
37 PRK13685 hypothetical protein; 38.1 40 0.00087 28.7 3.5 19 85-104 3-21 (326)
38 COG2610 GntT H+/gluconate symp 37.4 27 0.00058 32.5 2.5 12 50-61 231-242 (442)
39 TIGR02004 PTS-IIBC-malX PTS sy 36.1 72 0.0016 29.9 5.0 44 88-142 284-327 (517)
40 PRK12884 ubiA prenyltransferas 34.9 92 0.002 25.6 5.0 36 88-124 223-258 (279)
41 TIGR02003 PTS-II-BC-unk1 PTS s 34.4 84 0.0018 30.0 5.2 32 88-127 308-339 (548)
42 PF11174 DUF2970: Protein of u 33.3 84 0.0018 21.6 3.8 50 101-151 6-55 (56)
43 PF02411 MerT: MerT mercuric t 33.0 1.3E+02 0.0028 23.2 5.2 25 90-115 51-75 (116)
44 PRK10110 bifunctional PTS syst 32.1 91 0.002 29.3 5.0 43 89-142 294-336 (530)
45 PF02468 PsbN: Photosystem II 32.0 45 0.00098 22.3 2.2 20 92-111 9-28 (43)
46 COG3366 Uncharacterized protei 31.7 32 0.00069 31.0 1.9 83 6-92 139-233 (311)
47 PF10027 DUF2269: Predicted in 30.2 1.3E+02 0.0029 22.7 4.8 35 88-123 5-39 (150)
48 PF02628 COX15-CtaA: Cytochrom 29.9 1.3E+02 0.0029 25.2 5.2 56 86-152 225-280 (302)
49 PRK01001 putative inner membra 29.0 1.5E+02 0.0033 30.0 6.2 33 58-92 661-694 (795)
50 PF09026 CENP-B_dimeris: Centr 28.7 51 0.0011 25.7 2.3 26 65-90 49-75 (101)
51 PRK01318 membrane protein inse 28.3 1.3E+02 0.0028 28.4 5.4 83 51-147 399-486 (521)
52 PF07331 TctB: Tripartite tric 27.9 1.1E+02 0.0024 22.2 3.9 42 90-132 37-78 (141)
53 TIGR01583 formate-DH-gamm form 27.2 1.4E+02 0.003 23.9 4.7 58 79-140 5-64 (204)
54 COG3476 Tryptophan-rich sensor 26.9 69 0.0015 26.4 3.0 42 75-117 33-75 (161)
55 TIGR02120 GspF general secreti 26.8 1.9E+02 0.0041 25.0 5.7 38 122-159 248-285 (399)
56 cd08763 Cyt_b561_CYB561 Verteb 26.7 2.4E+02 0.0052 22.2 5.9 31 123-153 73-103 (143)
57 PRK09821 putative transporter; 26.7 44 0.00096 31.0 2.0 59 85-148 271-331 (454)
58 PF10067 DUF2306: Predicted me 26.7 39 0.00084 24.6 1.4 28 121-148 2-29 (103)
59 cd08761 Cyt_b561_CYB561D2_like 26.4 1.3E+02 0.0027 23.6 4.3 71 89-160 23-93 (183)
60 PRK10573 type IV pilin biogene 26.2 86 0.0019 27.1 3.6 37 46-82 161-201 (399)
61 MTH00152 ND6 NADH dehydrogenas 25.8 1.9E+02 0.004 22.8 5.1 45 87-150 19-64 (163)
62 PF09678 Caa3_CtaG: Cytochrome 25.3 97 0.0021 25.6 3.6 56 51-107 64-119 (244)
63 COG0706 YidC Preprotein transl 25.2 1.6E+02 0.0034 25.6 5.0 71 70-148 206-276 (314)
64 PRK14984 high-affinity glucona 25.2 59 0.0013 30.1 2.5 60 85-149 256-317 (438)
65 PF14316 DUF4381: Domain of un 24.6 47 0.001 25.3 1.5 39 75-114 4-46 (146)
66 KOG4841 Dolichol-phosphate man 24.3 1.6E+02 0.0034 22.8 4.2 40 79-121 31-73 (95)
67 PF10660 MitoNEET_N: Iron-cont 24.2 25 0.00055 25.0 0.0 34 73-107 13-54 (64)
68 PF04191 PEMT: Phospholipid me 23.4 1.4E+02 0.0031 20.6 3.7 50 94-143 5-68 (106)
69 KOG1381 Para-hydroxybenzoate-p 23.2 1.5E+02 0.0033 27.4 4.6 44 100-144 299-345 (353)
70 MTH00015 ND6 NADH dehydrogenas 23.2 2.3E+02 0.005 22.1 5.2 45 87-150 19-64 (155)
71 PRK13183 psbN photosystem II r 23.1 52 0.0011 22.4 1.3 20 92-111 12-31 (46)
72 TIGR00985 3a0801s04tom mitocho 23.0 96 0.0021 25.1 3.1 32 96-129 15-46 (148)
73 PF13172 PepSY_TM_1: PepSY-ass 23.0 1.3E+02 0.0029 17.9 3.0 28 121-148 2-30 (34)
74 COG1971 Predicted membrane pro 22.8 1.2E+02 0.0025 25.7 3.6 50 64-114 44-93 (190)
75 PRK10255 PTS system N-acetyl g 22.7 1.7E+02 0.0037 28.6 5.1 30 89-126 233-262 (648)
76 PRK10452 multidrug efflux syst 22.6 2.7E+02 0.0058 21.4 5.3 56 93-157 1-56 (120)
77 MTH00212 ND6 NADH dehydrogenas 21.6 1.8E+02 0.004 23.0 4.4 45 87-150 19-64 (160)
78 PRK10639 formate dehydrogenase 21.6 2.1E+02 0.0045 23.1 4.7 67 76-144 7-73 (211)
79 CHL00020 psbN photosystem II p 21.4 51 0.0011 22.1 1.0 20 92-111 9-28 (43)
80 MTH00064 ND6 NADH dehydrogenas 21.2 1.2E+02 0.0026 24.7 3.3 46 87-150 19-65 (151)
81 PF04973 NMN_transporter: Nico 21.0 78 0.0017 24.8 2.1 61 96-157 53-114 (181)
82 COG3114 CcmD Heme exporter pro 21.0 33 0.00071 25.0 0.0 11 98-108 9-19 (67)
83 PF02064 MAS20: MAS20 protein 20.9 32 0.0007 26.7 0.0 34 95-130 4-37 (121)
84 PF01788 PsbJ: PsbJ; InterPro 20.6 1E+02 0.0022 20.6 2.3 30 80-110 7-36 (40)
85 COG2855 Predicted membrane pro 20.2 2.4E+02 0.0053 25.7 5.3 105 36-149 213-332 (334)
86 PRK14853 nhaA pH-dependent sod 20.1 84 0.0018 29.2 2.5 83 49-148 25-109 (423)
No 1
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=99.78 E-value=1.4e-19 Score=145.14 Aligned_cols=75 Identities=33% Similarity=0.509 Sum_probs=69.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHH---------------------------------------HHHhHh
Q 031384 86 VHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEE---------------------------------------KAKAKD 126 (160)
Q Consensus 86 vhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Ev---------------------------------------k~K~~~ 126 (160)
..++||++|+.++|++++|+.|+|||+|+..+.+. +.|+|+
T Consensus 2 l~liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~ 81 (175)
T PF13301_consen 2 LALIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQENHGRWLTGGVVVAVLIALAYSIARAIFLILALTGTRKELVKLKARD 81 (175)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhccccccchhcccchhhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 36899999977779999999999999999955555 589999
Q ss_pred hchhhHHHHHHHHHHhhhhhHhHHhhCCCCCcCC
Q 031384 127 LHPKLLGGMFFFFALGATGGITSLLTSDKPIFER 160 (160)
Q Consensus 127 ~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI~ES 160 (160)
+|+|+|+++++||++|++||+++..+|++|+|+|
T Consensus 82 ~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~s 115 (175)
T PF13301_consen 82 RHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWS 115 (175)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccC
Confidence 9999999999999999999999999999999987
No 2
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=87.94 E-value=1.6 Score=31.85 Aligned_cols=71 Identities=15% Similarity=-0.006 Sum_probs=51.9
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCC
Q 031384 81 LPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK 155 (160)
Q Consensus 81 LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~k 155 (160)
.+....-+.|-+++ ++-++.+.-+.++.+.-+... .+..+++.|..+|-..+.++++=.+.|.++..+++.
T Consensus 29 ~~~~~~~~~H~~lq-~l~~~~~~~G~~~~~~~~~~~---~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~ 99 (137)
T PF03188_consen 29 KSRKWWFRIHWILQ-VLALVFAIIGFVAIFINKNRN---GKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGL 99 (137)
T ss_pred cccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccc---CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 34444566788888 666666666666666544222 346788899999999999999999999998876443
No 3
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=85.48 E-value=0.71 Score=42.17 Aligned_cols=59 Identities=20% Similarity=0.034 Sum_probs=36.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhh-hheeeeeeCCHHH-HHHhHhhchhhHHHHHHHHHHhhhhhHhH
Q 031384 86 VHWGHPGNMAVVLFAMGGYGTY-LGFCIRYSDDMEE-KAKAKDLHPKLLGGMFFFFALGATGGITS 149 (160)
Q Consensus 86 vhwGHPlmM~wVLlamg~Ya~Y-LGwQiR~tad~Ev-k~K~~~~H~qlgs~lL~fMvLG~iGGMlS 149 (160)
.=.|+|.. .|+.-.+++.| +|++ +..+.++ .+-....=...|.++|..=+-|+.|+++.
T Consensus 260 ~flG~p~i---ALlig~l~a~~~l~~~--~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg~vl~ 320 (441)
T PF02447_consen 260 SFLGDPNI---ALLIGVLIALYLLGRR--RGMSREEVMKWLEKALKPAGMILLITGAGGAFGQVLK 320 (441)
T ss_pred HHhCCcHH---HHHHHHHHHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 44567753 34444445554 4543 3333333 35566667788999999889999998874
No 4
>PRK13681 hypothetical protein; Provisional
Probab=84.03 E-value=0.48 Score=30.66 Aligned_cols=17 Identities=29% Similarity=0.796 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhhHh
Q 031384 132 LGGMFFFFALGATGGIT 148 (160)
Q Consensus 132 gs~lL~fMvLG~iGGMl 148 (160)
-..+|++|++|.+||++
T Consensus 8 ~i~lfalmAiGgigGvm 24 (35)
T PRK13681 8 VIALFLLMAIGGIGGVM 24 (35)
T ss_pred HHHHHHHHHhcCcccee
Confidence 35689999999999986
No 5
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=83.00 E-value=3.2 Score=32.52 Aligned_cols=53 Identities=21% Similarity=0.141 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhh
Q 031384 88 WGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLT 152 (160)
Q Consensus 88 wGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvm 152 (160)
..|=++ |.+.+.+.+|+.|.|++.| ..+|+|+|.|-+-....-++.|++--+|
T Consensus 79 ~~Hi~L-A~~~~pL~l~tl~~a~~~~-----------~~~Hrki~r~t~piWlyvsvTGvvVYlm 131 (133)
T PF04238_consen 79 ISHIIL-AIVALPLVLYTLYRALRGR-----------FTRHRKIGRWTFPIWLYVSVTGVVVYLM 131 (133)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHcC-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345444 4889999999999999884 6799999999999999988888875544
No 6
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=81.23 E-value=5.7 Score=31.11 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=20.0
Q ss_pred HhHhhchhhHHHHHHHHHHhhhhhHhHHh
Q 031384 123 KAKDLHPKLLGGMFFFFALGATGGITSLL 151 (160)
Q Consensus 123 K~~~~H~qlgs~lL~fMvLG~iGGMlSLv 151 (160)
.+.+.|..+|-..+.++++=.++|..+..
T Consensus 90 hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~ 118 (183)
T cd08761 90 HFTSWHGILGLVTVILIVLQALGGLALLY 118 (183)
T ss_pred CccchhHHHHHHHHHHHHHHHHHhHHHHh
Confidence 46667777777777777777777776543
No 7
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=80.90 E-value=6.8 Score=28.79 Aligned_cols=69 Identities=19% Similarity=0.130 Sum_probs=50.4
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCC
Q 031384 83 DWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK 155 (160)
Q Consensus 83 E~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~k 155 (160)
.....+.|=+++ ++-+.++.-+.++++.-+.. ..+..+.+.|..+|-..+.++++=.++|......+..
T Consensus 32 ~~~~~~~H~~l~-~l~~~~~~~G~~~~~~~~~~---~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~ 100 (131)
T cd08554 32 KRALKLLHAILH-LLAFVLGLVGLLAVFLFHNA---GGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLL 100 (131)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc---cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334556677787 67777777777777755421 1134678899999999999999999999998765554
No 8
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=80.69 E-value=3.6 Score=30.00 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=41.0
Q ss_pred hhHHHH--HHHHH-HHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCCCCcCC
Q 031384 90 HPGNMA--VVLFA-MGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER 160 (160)
Q Consensus 90 HPlmM~--wVLla-mg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI~ES 160 (160)
||++|. |+++. .|+.+.+..+ .|. ..|......|.-+-.+.++++++|..-...+--.++++-|.|
T Consensus 2 H~~lm~~~f~~l~~~~il~~r~~~-~~~----~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s 70 (137)
T PF03188_consen 2 HPILMTIGFVFLMPEGILAARYNP-FRR----KSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKS 70 (137)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhh-hcc----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Confidence 999993 44333 4444444222 221 223445567888888888888888877777666666676654
No 9
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=78.29 E-value=4 Score=31.92 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=51.4
Q ss_pred hhhHHHHhhcC-CCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhH
Q 031384 69 FGPFVELVKSW-NLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGI 147 (160)
Q Consensus 69 lePia~~f~sl-~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGM 147 (160)
+-|++-.+... ..+...--+.|=.+| ++-++++..+..+|+... ...+..++..|..+|-.++.++++=.+.|.
T Consensus 50 l~p~gil~ar~~~~~~~~~~~~H~~~q-~~~~~~~i~g~~~~~~~~----~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~ 124 (191)
T cd08760 50 LMPIGALLARYFLLGDPVWFYLHAGLQ-LLAVLLAIAGFVLGIVLV----QGGGGSLNNAHAILGIIVLALAILQPLLGL 124 (191)
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHH-HHHHHHHHHHHHHHHHhh----ccCCCCCcCcchhhhHHHHHHHHHHHHHHH
Confidence 34444443222 334445455677777 666777777777777754 223467899999999999999999888888
Q ss_pred hH
Q 031384 148 TS 149 (160)
Q Consensus 148 lS 149 (160)
+.
T Consensus 125 ~~ 126 (191)
T cd08760 125 LR 126 (191)
T ss_pred hc
Confidence 64
No 10
>COG2322 Predicted membrane protein [Function unknown]
Probab=74.24 E-value=4.7 Score=33.88 Aligned_cols=54 Identities=15% Similarity=0.034 Sum_probs=41.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHh
Q 031384 86 VHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLL 151 (160)
Q Consensus 86 vhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLv 151 (160)
.=|.|=.+- .+.+-++.|+.++||+.. .+||+|+|.|--..--.-++-|++--+
T Consensus 118 iL~~Hi~LA-~i~vPLal~al~~a~~~~-----------~~rHrki~r~ta~~Wlyva~tGv~VYL 171 (177)
T COG2322 118 ILITHIILA-AINVPLALYALILAWKGL-----------YERHRKIGRWTAPLWLYVALTGVVVYL 171 (177)
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHHhcch-----------hhhhheeeehhhHHHHHHHHHHHHHhh
Confidence 567787666 888899999999999876 789999999876665555555554433
No 11
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=73.90 E-value=7.8 Score=27.20 Aligned_cols=53 Identities=23% Similarity=0.147 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhhhee-eeee-------CCHHHHHHhHhhchhhHHHHHHHHHHhhhhhH
Q 031384 94 MAVVLFAMGGYGTYLGFC-IRYS-------DDMEEKAKAKDLHPKLLGGMFFFFALGATGGI 147 (160)
Q Consensus 94 M~wVLlamg~Ya~YLGwQ-iR~t-------ad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGM 147 (160)
+|.+++++.+-+.|+.|. .++. ..+-.|. ..+.|.-+|-+.+.+..+=++-|+
T Consensus 23 ~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~r~-~~dlH~~~G~~~~~~ll~~a~TG~ 83 (88)
T PF13703_consen 23 LALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSKRR-WFDLHRVLGLWFLPFLLVIALTGL 83 (88)
T ss_pred HHHHHHHHHHHHHHHhhHHhcCcccccccCCCCccCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777888883 2211 1122233 788999999998877665444444
No 12
>PF03203 MerC: MerC mercury resistance protein
Probab=72.65 E-value=10 Score=28.19 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=22.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhee
Q 031384 86 VHWGHPGNMAVVLFAMGGYGTYLGFC 111 (160)
Q Consensus 86 vhwGHPlmM~wVLlamg~Ya~YLGwQ 111 (160)
.+|.|-.++ .+...+++++.|.|||
T Consensus 36 ~~~~h~~ll-~~~~~i~~~al~~g~r 60 (116)
T PF03203_consen 36 NEWFHWLLL-YLFLPIALLALFRGYR 60 (116)
T ss_pred ccHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 678888888 8889999999999995
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=68.46 E-value=20 Score=26.38 Aligned_cols=60 Identities=23% Similarity=0.074 Sum_probs=40.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhh
Q 031384 86 VHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLT 152 (160)
Q Consensus 86 vhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvm 152 (160)
.||+.-+. |.++.+.|..+ ++.-+. .-.+..+.+.|..+|-..+.++++=.++|.+...-
T Consensus 36 ~H~~lq~~-a~~~~~~g~~~---~~~~~~---~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~ 95 (129)
T smart00665 36 LHVVLQIL-ALVLGVIGLLA---IFISHN---ESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLP 95 (129)
T ss_pred HHHHHHHH-HHHHHHHHHHH---HHHHcc---ccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666543 35555555544 443321 11135689999999999999999999999987644
No 14
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=61.71 E-value=9.1 Score=26.76 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhheeeeeeCCHHH
Q 031384 95 AVVLFAMGGYGTYLGFCIRYSDDMEE 120 (160)
Q Consensus 95 ~wVLlamg~Ya~YLGwQiR~tad~Ev 120 (160)
|++|++.|.--.|.|+|...+...+.
T Consensus 4 gi~Llv~GivLl~~G~~~~~S~~s~~ 29 (59)
T PF11381_consen 4 GIALLVGGIVLLYFGYQASDSLGSQV 29 (59)
T ss_pred eehHHHHHHHHHHhhhhhhhhHHHHH
Confidence 57899999999999999998743333
No 15
>cd03496 SQR_TypeC_CybS SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Eukaryotic SQRs reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. CybS and CybL are the two transmembrane proteins of eukaryotic SQRs. They contain heme and quinone binding sites. CybS is the eukaryotic homolog of the bacterial SdhD subunit. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the transmembrane subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of
Probab=60.19 E-value=6.2 Score=29.58 Aligned_cols=64 Identities=17% Similarity=-0.009 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCC
Q 031384 89 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK 155 (160)
Q Consensus 89 GHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~k 155 (160)
+||+++ ..+.....|=+++|+|.=..+=-..| ++. .=+++.-+++.....-+.+|+.-+-+++-
T Consensus 30 ~~pil~-~ll~~~~~~H~~~G~q~vIeDYv~~~-~~~-~~~~~a~~~~~~~s~~~l~Gl~~~~~~d~ 93 (104)
T cd03496 30 LSPVMD-AALAAALLLHSHWGFESCIIDYVPKR-VGG-KLHKLAMYLLYAGSALSLAGLYYFNTNDV 93 (104)
T ss_pred ccHHHH-HHHHHHHHHHHHhcceeeeeecCCCc-ccc-hHHHHHHHHHHHHHHHHHHHheeeeecCc
Confidence 799888 78888888889999998876311111 111 11566777777777778888776665554
No 16
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=56.50 E-value=13 Score=28.53 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=27.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhheeeeee
Q 031384 86 VHWGHPGNMAVVLFAMGGYGTYLGFCIRYS 115 (160)
Q Consensus 86 vhwGHPlmM~wVLlamg~Ya~YLGwQiR~t 115 (160)
+||.-+..++-++++++.|++..+|..|..
T Consensus 50 lQWIFAFvI~avlfv~sl~vav~~~~~r~~ 79 (97)
T PF08611_consen 50 LQWIFAFVIAAVLFVLSLVVAVPKWTGRDA 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccch
Confidence 899999999999999999999999998864
No 17
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=55.76 E-value=38 Score=24.83 Aligned_cols=67 Identities=18% Similarity=0.047 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCCCCcC
Q 031384 89 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFE 159 (160)
Q Consensus 89 GHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI~E 159 (160)
-||++|.+....+-.-+... . | ......|...+.-|.-+..+-+.+.+.|..-+..+--.++++-|.
T Consensus 4 ~H~~lm~~g~~~l~~~~il~-~--r-~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~ 70 (131)
T cd08554 4 WHPLLMVIGFVFLMGEALLV-Y--R-VFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLY 70 (131)
T ss_pred ccHHHHHHHHHHHHHHHHHH-h--c-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccch
Confidence 39999955433233222211 0 1 112223444456798888888888777777766655445555543
No 18
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=54.14 E-value=34 Score=25.17 Aligned_cols=38 Identities=18% Similarity=-0.087 Sum_probs=24.7
Q ss_pred HhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCCCCcCC
Q 031384 123 KAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER 160 (160)
Q Consensus 123 K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI~ES 160 (160)
.-..-|.-+...-+.+++.|..-+..+--..+++.|.|
T Consensus 32 ~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s 69 (129)
T smart00665 32 TWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYS 69 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccc
Confidence 34566877777777777777766666654445566654
No 19
>PF07477 Glyco_hydro_67C: Glycosyl hydrolase family 67 C-terminus; InterPro: IPR011099 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the C-terminal region of alpha-glucuronidase, which is mainly alpha-helical. It wraps around the catalytic domain (IPR011100 from INTERPRO), making additional interactions both with the N-terminal domain (IPR005154 from INTERPRO) of its parent monomer and also forming the majority of the dimer-surface with the equivalent C-terminal domain of the other monomer of the dimer [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=53.60 E-value=11 Score=32.61 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=25.8
Q ss_pred CCCchhhHHhhhhHHHHhhcCCC-CchhhhhhhhH
Q 031384 59 LPGAGTVRALFGPFVELVKSWNL-PDWLVHWGHPG 92 (160)
Q Consensus 59 ~~g~~~~~~~lePia~~f~sl~L-PE~IvhwGHPl 92 (160)
.-|+..+.++-+|+++.|.+++- ||.++=|+|=+
T Consensus 105 ~tGs~~~~QY~~~~~~~y~~~~tcPeelLLwFHHv 139 (225)
T PF07477_consen 105 ATGSGATAQYAPPVAEQYEDLETCPEELLLWFHHV 139 (225)
T ss_dssp TTST-GGGGS-HHHHHHHHSTTTS-GGGHHHH-EE
T ss_pred CCCCCchhhcCHHHHHHhcCcccCCHHHHhhhccC
Confidence 34888999999999999999986 99998888743
No 20
>KOG1563 consensus Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase [Energy production and conversion]
Probab=53.12 E-value=6.3 Score=35.25 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhh-eeeeee
Q 031384 95 AVVLFAMGGYGTYLG-FCIRYS 115 (160)
Q Consensus 95 ~wVLlamg~Ya~YLG-wQiR~t 115 (160)
+|+++++.+.+-+|| ||.+|-
T Consensus 60 ~~ll~liPittFgLGtWQvkRl 81 (288)
T KOG1563|consen 60 AWLLLLIPITTFGLGTWQVKRL 81 (288)
T ss_pred HHHHHHhhhheeeccceeehhH
Confidence 489999999999999 999986
No 21
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=49.91 E-value=35 Score=23.19 Aligned_cols=54 Identities=20% Similarity=0.001 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhheeeeeeCCHHHH-HHhHhhchhhHHHHHHHHHHhhhhhHh
Q 031384 95 AVVLFAMGGYGTYLGFCIRYSDDMEEK-AKAKDLHPKLLGGMFFFFALGATGGIT 148 (160)
Q Consensus 95 ~wVLlamg~Ya~YLGwQiR~tad~Evk-~K~~~~H~qlgs~lL~fMvLG~iGGMl 148 (160)
|++-.++|.++.-.-++....++...+ .-....+...|.+++..+++|.++=-+
T Consensus 8 givy~~lg~~a~~~a~~~~~~~~~~~~~~~~~l~~~p~G~~ll~~vg~gli~~gi 62 (73)
T PF06724_consen 8 GIVYGALGYLALQAALGGGGSSDQGSQGALAWLLEQPFGRWLLGAVGLGLIGYGI 62 (73)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 677788888888888874434444444 334445566999999999999887443
No 22
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=48.34 E-value=8.4 Score=30.02 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHhhhheeeeeeC
Q 031384 91 PGNMAVVLFAMGGYGTYLGFCIRYSD 116 (160)
Q Consensus 91 PlmM~wVLlamg~Ya~YLGwQiR~ta 116 (160)
|..-+.++++++.-..|+|||+|+-.
T Consensus 30 p~~~~~~l~~la~~~~~~a~~vr~~~ 55 (138)
T PF11377_consen 30 PWTAGVTLLVLAAVELWLAWQVRRRI 55 (138)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677889999999999999775
No 23
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=48.26 E-value=23 Score=26.19 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=39.3
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhh
Q 031384 79 WNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGA 143 (160)
Q Consensus 79 l~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~ 143 (160)
...+.-+.||..=+.| +++++.|.+..+.-+ ....+...+.-.+.-|.-+|-.+++++++=.
T Consensus 4 ~~~~~R~~Hw~~al~~-~~l~~tG~~~~~~~~--~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~ 65 (188)
T PF00033_consen 4 FSLFTRLLHWLNALLF-ILLLITGLYLMFPFW--WLAGGFPGRQLLRWLHFSLGIVFLALFLLRI 65 (188)
T ss_dssp S-HHHHHHHHHHHHHH-HHHHHHHHHHH-TTG--GGGGTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHcccc--cccCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556999988888 777776666554331 1124455557788889888887776665433
No 24
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=47.27 E-value=7.6 Score=32.16 Aligned_cols=63 Identities=13% Similarity=0.166 Sum_probs=29.9
Q ss_pred CchhhHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHH
Q 031384 61 GAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMF 136 (160)
Q Consensus 61 g~~~~~~~lePia~~f~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL 136 (160)
|++|+.=+ -|. |.+.+.++-+ +.. .|.++|-+--.|++++.- ..+-++.....--+.+-+.++
T Consensus 109 GgDNigIY-iP~---Fa~~s~~~l~------v~l-~vF~ilv~v~c~la~~l~--~~p~i~~~leryg~~l~p~v~ 171 (191)
T PF03596_consen 109 GGDNIGIY-IPL---FASLSLAELI------VIL-IVFLILVGVWCFLAYKLA--RIPIIAEFLERYGRWLVPIVY 171 (191)
T ss_pred CCCeEEEe-ehh---hhcCCHHHHH------HHH-HHHHHHHHHHHHHHHHHh--CChHHHHHHHHhcccHHHHHH
Confidence 99998644 454 4445444322 222 445555555556666543 334444332222234444443
No 25
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=45.70 E-value=56 Score=24.27 Aligned_cols=47 Identities=23% Similarity=0.183 Sum_probs=30.5
Q ss_pred HhhcCCCCchhhhhhhhHHHHHHHHHHHHHHh-hhheeeeeeCCHHHH
Q 031384 75 LVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDDMEEK 121 (160)
Q Consensus 75 ~f~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~-YLGwQiR~tad~Evk 121 (160)
.+..+++|+...+=.=|.+=-|.|++.|.|++ -+||++-.-+|-++.
T Consensus 22 ~~~~~~~~~~~~~~ii~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA 69 (91)
T PF08285_consen 22 LLGLLPLPPEPQQEIIPYLPFYALVSFGCYSLFTLGYGVATFNDCPEA 69 (91)
T ss_pred HHccCCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhhccCCCHHH
Confidence 34445566533222222222389999999997 789999877877776
No 26
>PRK10472 low affinity gluconate transporter; Provisional
Probab=43.93 E-value=14 Score=34.14 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=35.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHhh-hheeeeeeCCHHHH-HHhHhhchhhHHHHHHHHHHhhhhhHh
Q 031384 86 VHWGHPGNMAVVLFAMGGYGTY-LGFCIRYSDDMEEK-AKAKDLHPKLLGGMFFFFALGATGGIT 148 (160)
Q Consensus 86 vhwGHPlmM~wVLlamg~Ya~Y-LGwQiR~tad~Evk-~K~~~~H~qlgs~lL~fMvLG~iGGMl 148 (160)
.-.|||..- |+.-.+++.| +|++ | ..+.|+- +-..+.=.+.|.+++..=+-|+.|+++
T Consensus 261 ~flG~p~iA---Llig~l~a~~~lg~~-~-~~~~~~~~~~~~~al~~~g~ilLItGaGGafg~vL 320 (445)
T PRK10472 261 EFIGHPFTA---ILVACLVAIYGLAMR-Q-GMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVL 320 (445)
T ss_pred HHhCChHHH---HHHHHHHHHHHHHhc-c-CCcHHHHHHHHHHHHHhhhHhheeecChHHHHHHH
Confidence 445888754 5555566664 7766 3 3232333 324444456888888887888888876
No 27
>PF14007 YtpI: YtpI-like protein
Probab=43.35 E-value=33 Score=25.59 Aligned_cols=43 Identities=21% Similarity=0.175 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHH
Q 031384 98 LFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFAL 141 (160)
Q Consensus 98 Llamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvL 141 (160)
++....|. |-=.|.||+.||-+|+-++.|-....+.++.++++
T Consensus 6 i~S~~~yv-y~k~k~~Rs~~p~~k~~~~aka~ialG~fl~~fgi 48 (89)
T PF14007_consen 6 IISLVFYV-YYKIKYFRSKDPMEKKWYSAKANIALGIFLILFGI 48 (89)
T ss_pred HHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 44577788999999988888888777777777764
No 28
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=42.49 E-value=31 Score=28.53 Aligned_cols=51 Identities=18% Similarity=0.099 Sum_probs=34.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHh-hchhhHHHHHHHH
Q 031384 84 WLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKD-LHPKLLGGMFFFF 139 (160)
Q Consensus 84 ~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~-~H~qlgs~lL~fM 139 (160)
.+..|.-.+|+ .+++++-+=+-++|.+++ +.++.||-+ .+...|.++.+||
T Consensus 99 ~~~~~~~~~~~-~~~~~~iid~~~l~r~vk----k~v~~kFp~~~~~~~gl~~Ya~~ 150 (170)
T PF11241_consen 99 QVQLYVTLAMY-VLLLLVIIDGVILGRRVK----KRVAEKFPDTTESGRGLGWYAFM 150 (170)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHCCCCcCCCcchhhHHHH
Confidence 34566666666 666777778889999887 455566665 5556666676665
No 29
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=41.80 E-value=22 Score=27.37 Aligned_cols=15 Identities=27% Similarity=0.115 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHh
Q 031384 92 GNMAVVLFAMGGYGT 106 (160)
Q Consensus 92 lmM~wVLlamg~Ya~ 106 (160)
++|.|+++||..|..
T Consensus 58 ~~~~w~~~A~~ly~~ 72 (103)
T PF11027_consen 58 MMMLWMVLAMALYLL 72 (103)
T ss_pred HHHHHHHHHHHHHHc
Confidence 567899999999985
No 30
>PRK11513 cytochrome b561; Provisional
Probab=40.84 E-value=72 Score=25.27 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=13.2
Q ss_pred HHHhHhhchhhHHHHHHHHHH
Q 031384 121 KAKAKDLHPKLLGGMFFFFAL 141 (160)
Q Consensus 121 k~K~~~~H~qlgs~lL~fMvL 141 (160)
+..+..-|..+|..+++++++
T Consensus 38 ~~~~~~~H~s~G~~vl~L~v~ 58 (176)
T PRK11513 38 RPLINMIHVSCGISILVLMVV 58 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777776654
No 31
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=40.73 E-value=24 Score=29.29 Aligned_cols=71 Identities=25% Similarity=0.256 Sum_probs=41.9
Q ss_pred hhhhhhHHHHHHHHHHHH-HHhhhheeeeee--CCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCCCC
Q 031384 86 VHWGHPGNMAVVLFAMGG-YGTYLGFCIRYS--DDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPI 157 (160)
Q Consensus 86 vhwGHPlmM~wVLlamg~-Ya~YLGwQiR~t--ad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI 157 (160)
.+|.=|.++..+++++|+ |+.++--+.|.. ...+.+.-.+....+.|..++ +-++-++.|..+|...+-|.
T Consensus 199 ~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i~-~s~ltt~~gf~~L~~s~~~~ 272 (333)
T PF03176_consen 199 LSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAIL-LSALTTAIGFGSLLFSPFPP 272 (333)
T ss_pred cceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchhH-HHHHHHHHHHHHHHHhhhhH
Confidence 444445544356677776 888876666543 222333344556666666654 55566677777777766554
No 32
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=40.62 E-value=38 Score=27.96 Aligned_cols=78 Identities=13% Similarity=-0.067 Sum_probs=45.5
Q ss_pred hHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhh
Q 031384 65 VRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGAT 144 (160)
Q Consensus 65 ~~~~lePia~~f~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~i 144 (160)
+..++.|. .+++.+++|+...|+.-.... . ++++-..++-.+.=.||..|+++|....-..+-.-.++++.+++|..
T Consensus 64 ~~gll~p~-~~~~~~gi~~~~~~~~~~~~g-~-~~G~l~lvGl~~Ll~RR~~~~~vr~~s~~~D~~~L~lLl~i~~tG~~ 140 (222)
T PF02665_consen 64 VVGLLIPG-AWFEALGISDEFYQLLAEVLG-D-IAGLLALVGLLILLVRRLFDPRVRAISTPSDYFVLLLLLAIVLTGLL 140 (222)
T ss_dssp HHHHHS-T-TTTTTT-S-HHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHSHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhH-HHHHHHhCchHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34456665 345667788666555333332 1 22223333445566789999999987777777777888888887765
Q ss_pred h
Q 031384 145 G 145 (160)
Q Consensus 145 G 145 (160)
.
T Consensus 141 ~ 141 (222)
T PF02665_consen 141 M 141 (222)
T ss_dssp C
T ss_pred H
Confidence 4
No 33
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=39.69 E-value=1.1e+02 Score=27.71 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCC
Q 031384 87 HWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSD 154 (160)
Q Consensus 87 hwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~ 154 (160)
.|.=+-++ .+.+.+|....+.+-+-++..+...+.=++-. +..+.+.++.|-.-|..-+..++
T Consensus 279 ~~~~~~~~-~~fl~~~ii~~~i~~~~~~~~~~~~~~F~~G~----~~~~~~a~vVgla~ai~v~~~~~ 341 (465)
T PF03606_consen 279 KWYFPEIA-ALFLIIGIIIGLIRHRSGKSPNEIVKAFFKGM----GDMLSFALVVGLARAISVFMEGG 341 (465)
T ss_pred cccHHHHH-HHHHHHHHHHHHHHhhccCCHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 68888888 67778888888877655544444444333332 33344455555555544444333
No 34
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=38.89 E-value=77 Score=24.57 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=34.5
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeC-CHHHHHHhHhhchhhHHHHHHHHH
Q 031384 80 NLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSD-DMEEKAKAKDLHPKLLGGMFFFFA 140 (160)
Q Consensus 80 ~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~ta-d~Evk~K~~~~H~qlgs~lL~fMv 140 (160)
+.++-+.||..-+.+ ++++..|.|-........... ....++..+.-|.-+|-.++++++
T Consensus 4 ~~~~R~~HW~~a~~~-i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l 64 (211)
T TIGR02125 4 SAPVRLFHWVRALAI-FVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLL 64 (211)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667999888888 777766654321111100010 111345677889988877666554
No 35
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=38.49 E-value=84 Score=26.86 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=42.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCCCCcC
Q 031384 83 DWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFE 159 (160)
Q Consensus 83 E~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI~E 159 (160)
.+|.++.+|..-..+++.|..+|+|.-.+ |.|.+.+|+ +.+.+++.++.|++-+++.++.++.|.|+
T Consensus 56 ~~if~~~~~~~~~l~~~~M~~~As~~a~~---------r~~~~~~~~-~~~~~~~~~~~~~~v~l~~lvl~~~~~~~ 122 (250)
T PF03649_consen 56 HYIFKLNNPWLVILWLLVMILVASFTAAR---------RAKLRPKGL-FFPVLALSLGAGTIVTLLLLVLRGAPWFD 122 (250)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHH---------hcccCccch-hHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 34456667776656678888888875321 223333333 44555556666666777888888888775
No 36
>PRK10034 fructuronate transporter; Provisional
Probab=38.47 E-value=21 Score=32.93 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=38.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhh-hheeeeeeCCHHHH-HHhHhhchhhHHHHHHHHHHhhhhhHhH
Q 031384 85 LVHWGHPGNMAVVLFAMGGYGTY-LGFCIRYSDDMEEK-AKAKDLHPKLLGGMFFFFALGATGGITS 149 (160)
Q Consensus 85 IvhwGHPlmM~wVLlamg~Ya~Y-LGwQiR~tad~Evk-~K~~~~H~qlgs~lL~fMvLG~iGGMlS 149 (160)
+.-+|||..- |+.-...+.| +|.+ +..+.++- .-........|.+++..=+-|+.|+++.
T Consensus 259 ~~fiG~p~iA---Llig~l~a~~~lg~~--~~~~~~~~~~~~~~~l~~~g~IlLitgaGGafg~vl~ 320 (447)
T PRK10034 259 VNFIGSSPIA---MFIAMVVAFVLFGTA--RGHDMQWVMNAFESAVKSIAMVILIIGAGGVLKQTII 320 (447)
T ss_pred HHHhCCHHHH---HHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhhhHhhheecChHHHHHHHH
Confidence 3557888754 4444445553 3555 34443443 3366677788888888888889998874
No 37
>PRK13685 hypothetical protein; Provisional
Probab=38.07 E-value=40 Score=28.68 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=12.9
Q ss_pred hhhhhhhHHHHHHHHHHHHH
Q 031384 85 LVHWGHPGNMAVVLFAMGGY 104 (160)
Q Consensus 85 IvhwGHPlmM~wVLlamg~Y 104 (160)
+.||.||.+- |.++.+..+
T Consensus 3 ~~~F~~P~~l-~ll~~~~~~ 21 (326)
T PRK13685 3 LSGFAHPWFF-LFLLVVAAL 21 (326)
T ss_pred ccchhhHHHH-HHHHHHHHH
Confidence 3699999776 766654333
No 38
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=37.44 E-value=27 Score=32.52 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=7.0
Q ss_pred chhHHHHhhCCC
Q 031384 50 PLPLLFDAALPG 61 (160)
Q Consensus 50 ~~p~~~~a~~~g 61 (160)
-+|+++.+.-+.
T Consensus 231 ~vpi~lm~l~ti 242 (442)
T COG2610 231 LVPILLMALKTI 242 (442)
T ss_pred HHHHHHHHHHHH
Confidence 467776665443
No 39
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=36.05 E-value=72 Score=29.93 Aligned_cols=44 Identities=23% Similarity=0.171 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHh
Q 031384 88 WGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALG 142 (160)
Q Consensus 88 wGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG 142 (160)
-..|.|| ..|-+.+ +|+|. ++++|.|+|.+.. +.|..+.-|..|
T Consensus 284 G~~~~~m-fglpgaa-lAmy~------~a~~e~rk~v~~~---l~~aalts~ltG 327 (517)
T TIGR02004 284 GKMPTFL-GGLPGAA-LAMYH------CARPANRHKIKAL---LLSGVVACAVGG 327 (517)
T ss_pred CchHHHH-HhhHHHH-HHHHH------hcCHHHHHHHHHH---HHHHHHHHHHhc
Confidence 4558899 7777777 88884 6899998776554 444444444333
No 40
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=34.93 E-value=92 Score=25.59 Aligned_cols=36 Identities=14% Similarity=-0.007 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHh
Q 031384 88 WGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKA 124 (160)
Q Consensus 88 wGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~ 124 (160)
|..+... ++.++.+....|..++..+..|++...+.
T Consensus 223 ~~~~~y~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (279)
T PRK12884 223 IFNILYL-APVLVADLIFLYSAYSLLRSQDRETIRKV 258 (279)
T ss_pred HhhHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3334444 44455555555666665555555444444
No 41
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=34.43 E-value=84 Score=29.99 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=24.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhh
Q 031384 88 WGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDL 127 (160)
Q Consensus 88 wGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~ 127 (160)
-..|.|| ..|-+.+ +|+|. ++++|.|+|.+.-
T Consensus 308 G~~~~~m-FGLpgaa-lAmy~------~A~~enrk~v~~l 339 (548)
T TIGR02003 308 GQMIGAT-AALMGIA-FAMFR------NVDADKKAKYKMM 339 (548)
T ss_pred chHHHHH-HHHHHHH-HHHHH------hCCHHHHHHHHHH
Confidence 4678999 8888777 88885 6889999776543
No 42
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=33.29 E-value=84 Score=21.56 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=31.4
Q ss_pred HHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHh
Q 031384 101 MGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLL 151 (160)
Q Consensus 101 mg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLv 151 (160)
.+..+++.|.|-++.-+ +.-.+-+-.|+-+.+++++++-.+.+=++..++
T Consensus 6 ~sVl~af~GVqs~~~~e-~Df~~~~p~~~Ii~gii~~~~fV~~Lv~lV~~v 55 (56)
T PF11174_consen 6 KSVLWAFFGVQSSKNRE-RDFAQGSPVHFIIVGIILAALFVAGLVLLVNLV 55 (56)
T ss_pred HHHHHHHhCcCcchhHH-HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667889988543211 112566778888888887776666555555543
No 43
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=32.97 E-value=1.3e+02 Score=23.24 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHhhhheeeeee
Q 031384 90 HPGNMAVVLFAMGGYGTYLGFCIRYS 115 (160)
Q Consensus 90 HPlmM~wVLlamg~Ya~YLGwQiR~t 115 (160)
+|.+.+..+..+ +|+-|.=++-|+.
T Consensus 51 Rp~fi~~tl~~l-g~a~~~~yr~~~~ 75 (116)
T PF02411_consen 51 RPYFIALTLLFL-GYAFWRLYRPRKA 75 (116)
T ss_pred HHHHHHHHHHHH-HHHHHHHHccccc
Confidence 677775544444 4666655565544
No 44
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=32.06 E-value=91 Score=29.35 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHh
Q 031384 89 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALG 142 (160)
Q Consensus 89 GHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG 142 (160)
.-|.|| ..|-+.+ +|+|. ++++|.|+|.+.- +.|..+.-|..|
T Consensus 294 ~~~~~m-fglpgaa-lAmy~------~A~~enrk~v~~~---l~~aa~ts~ltG 336 (530)
T PRK10110 294 KMPAFL-GGLPGAA-LAMYH------CARPENRHKIKGL---LISGVIACVVGG 336 (530)
T ss_pred chHHHH-HhhHHHH-HHHHH------hcCHHHHHHHHHH---HHHHHHHHHHhc
Confidence 348888 7777777 88885 7899999776554 444444444333
No 45
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=32.05 E-value=45 Score=22.32 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhhee
Q 031384 92 GNMAVVLFAMGGYGTYLGFC 111 (160)
Q Consensus 92 lmM~wVLlamg~Ya~YLGwQ 111 (160)
+.++.+|+++.+|+.|.++-
T Consensus 9 i~i~~~lv~~Tgy~iYtaFG 28 (43)
T PF02468_consen 9 IFISCLLVSITGYAIYTAFG 28 (43)
T ss_pred HHHHHHHHHHHhhhhhheeC
Confidence 45668899999999999884
No 46
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.69 E-value=32 Score=30.99 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=44.8
Q ss_pred cccccccccccccccccccchhhhHHHHHHhhcccccceee-ecCchhHHHHh-----hCCC-chhhHHhhhhHHHHhhc
Q 031384 6 GLLCRSFALKNEVIETADGAQQVEEEEEKKEMEKPRETLLY-SIAPLPLLFDA-----ALPG-AGTVRALFGPFVELVKS 78 (160)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~-s~~~~p~~~~a-----~~~g-~~~~~~~lePia~~f~s 78 (160)
|.+..+..+||+.++-.|.+..+.-++.+.+.+. ++-|-+ -+.|.-+.... .--| .|-+++.++|+++.
T Consensus 139 g~l~g~~~l~~~~~~~~~~~~~~~~~~k~a~~~~-kt~k~~~rv~~~~~~~~~li~~L~~~G~~d~~~~~~~pl~~~--- 214 (311)
T COG3366 139 GVLYGKISLKNDDIKFPSNSELSIPANKEAVKEA-KTFKVFKRVIPVVVPATVLIFFLIELGLFDYVEEFLHPLTNY--- 214 (311)
T ss_pred HHHHHHHhccCCCccCcccCCCCcchHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHhhh---
Confidence 4566778889999886666555432222222111 222222 22222111111 1224 89999999999888
Q ss_pred CCCCchh-----hhhhhhH
Q 031384 79 WNLPDWL-----VHWGHPG 92 (160)
Q Consensus 79 l~LPE~I-----vhwGHPl 92 (160)
+++|... .++.|+.
T Consensus 215 L~lp~eav~v~~~~~~~~~ 233 (311)
T COG3366 215 LPLPPEAVTVVLTNLANII 233 (311)
T ss_pred cCCCcchHHHHHHHHHHHH
Confidence 7887544 4555543
No 47
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=30.19 E-value=1.3e+02 Score=22.66 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHH
Q 031384 88 WGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAK 123 (160)
Q Consensus 88 wGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K 123 (160)
+.|=+- ++++++-+.....+.++.++++|+++...
T Consensus 5 ~lHila-ail~~G~~~~~~~~~~~a~r~~~~~~~~~ 39 (150)
T PF10027_consen 5 FLHILA-AILLVGPGFVAAVMMWRARRTGDPEAIAR 39 (150)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 344333 47778888888888999999999988743
No 48
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=29.92 E-value=1.3e+02 Score=25.16 Aligned_cols=56 Identities=18% Similarity=0.071 Sum_probs=36.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhh
Q 031384 86 VHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLT 152 (160)
Q Consensus 86 vhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvm 152 (160)
+||.|.... +++++...+..+.-++.|.. ...++.+.+++.++++=.+-|++.+++
T Consensus 225 v~~~Hr~~A-~~~~~~~~~l~~~~~r~~~~----------~~~~~~~~~~~~ll~~Qv~lGi~~v~~ 280 (302)
T PF02628_consen 225 VQFIHRLLA-LLVLLLLLALAVRAWRRRRS----------RALRRLAVLLLALLLLQVLLGILTVLT 280 (302)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHccCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999988 66665555554444443322 445667777777777777777776655
No 49
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=28.96 E-value=1.5e+02 Score=30.04 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=20.9
Q ss_pred hCCCchhhHHhhhhHH-HHhhcCCCCchhhhhhhhH
Q 031384 58 ALPGAGTVRALFGPFV-ELVKSWNLPDWLVHWGHPG 92 (160)
Q Consensus 58 ~~~g~~~~~~~lePia-~~f~sl~LPE~IvhwGHPl 92 (160)
+++.+..++. .|+. .|+.++..|+++.+|..|+
T Consensus 661 vL~~sieLRg--asFLpgWI~DLSapDplf~~~~~i 694 (795)
T PRK01001 661 LLKSSFLLRG--ASFIPGWIDNLTAPDVLFSWETPI 694 (795)
T ss_pred HHHHhHHhcC--CchhhhhHhhccCCCccccccccc
Confidence 3444334433 4454 5999999999987775553
No 50
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=28.67 E-value=51 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=17.2
Q ss_pred hHHhhhhHHHHhhcCCCCchh-hhhhh
Q 031384 65 VRALFGPFVELVKSWNLPDWL-VHWGH 90 (160)
Q Consensus 65 ~~~~lePia~~f~sl~LPE~I-vhwGH 90 (160)
..+++.|...++-|++|=+-+ .|-+|
T Consensus 49 a~~~~~~v~rYltSf~id~~v~shi~h 75 (101)
T PF09026_consen 49 AMAYFTMVKRYLTSFPIDDKVQSHILH 75 (101)
T ss_dssp HHHHHHHHHHHHCTS---HHHHHHHHH
T ss_pred HHhhcchHhhhhhccchhHhhhhhhhc
Confidence 478899999999999987665 44444
No 51
>PRK01318 membrane protein insertase; Provisional
Probab=28.26 E-value=1.3e+02 Score=28.36 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=42.9
Q ss_pred hhHHH--HhhCCCchhhHHhhhhHHHHhhcCCCCchh--hhhhh-hHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhH
Q 031384 51 LPLLF--DAALPGAGTVRALFGPFVELVKSWNLPDWL--VHWGH-PGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAK 125 (160)
Q Consensus 51 ~p~~~--~a~~~g~~~~~~~lePia~~f~sl~LPE~I--vhwGH-PlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~ 125 (160)
+|+++ --++..+..++. +|+.-||.+|..|+|. +|.+= |++|+...+. -..++-+ ..|+-++.
T Consensus 399 iPifialy~~l~~~~el~~--~~fl~Wi~DLs~~Dp~~il~~~~lPil~~~~~~~----~~~l~~~---~~~~~q~k--- 466 (521)
T PRK01318 399 IPIFFALYKVLLVSIELRH--APFIGWIHDLSAPDPYFILHIGLLPILMGITMFL----QQKLNPT---PTDPMQAK--- 466 (521)
T ss_pred HHHHHHHHHHHHHHHHhcc--CchheeeccccccccchhHHHHHHHHHHHHHHHH----HHHhcCC---CCCHHHHH---
Confidence 45543 233444444443 6777799999999875 21111 6666433222 1122211 13443322
Q ss_pred hhchhhHHHHHHHHHHhhhhhH
Q 031384 126 DLHPKLLGGMFFFFALGATGGI 147 (160)
Q Consensus 126 ~~H~qlgs~lL~fMvLG~iGGM 147 (160)
=-++.+++++||....=.|+
T Consensus 467 --im~~mpi~~~~~~~~~PagL 486 (521)
T PRK01318 467 --IMKFMPLIFTFFFLSFPAGL 486 (521)
T ss_pred --HHHHHHHHHHHHHHHHHHHH
Confidence 13468888888777665553
No 52
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=27.90 E-value=1.1e+02 Score=22.25 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhH
Q 031384 90 HPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLL 132 (160)
Q Consensus 90 HPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlg 132 (160)
=|.+.++++.++|..-....++.+ .++++...+.+.++--+.
T Consensus 37 fP~~l~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (141)
T PF07331_consen 37 FPRLLGILLLILSLLLLVRSFRGP-DEDEEPFDRVDWKRVLLV 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-ccccccccHHHHHHHHHH
Confidence 477888888888887766666554 223333334444443333
No 53
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=27.20 E-value=1.4e+02 Score=23.87 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=32.6
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHhhh--heeeeeeCCHHHHHHhHhhchhhHHHHHHHHH
Q 031384 79 WNLPDWLVHWGHPGNMAVVLFAMGGYGTYL--GFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFA 140 (160)
Q Consensus 79 l~LPE~IvhwGHPlmM~wVLlamg~Ya~YL--GwQiR~tad~Evk~K~~~~H~qlgs~lL~fMv 140 (160)
.+.|.-+.||..=+.+ +++++.|.+-.+- -|-.....+. ...+.-|.-.|-+++++++
T Consensus 5 ~~~~~r~~HW~~a~~~-~~l~~tG~~~~~~~~~~~~~~~~~~---~~~~~~H~~~g~~~~~~~i 64 (204)
T TIGR01583 5 FSLFDRILHWIAAISF-LILVFTGFVMMFGKFFWLGVILGEL---WVAKNLHPFAGILFFISII 64 (204)
T ss_pred eCHHHHHHHHHHHHHH-HHHHHHHHHHHcchhhhhccccchH---HHHHHHHHHHHHHHHHHHH
Confidence 4567777899887777 6666666554322 1111111122 2566778777766655544
No 54
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=26.93 E-value=69 Score=26.40 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=37.1
Q ss_pred HhhcCCCCchh-hhhhhhHHHHHHHHHHHHHHhhhheeeeeeCC
Q 031384 75 LVKSWNLPDWL-VHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDD 117 (160)
Q Consensus 75 ~f~sl~LPE~I-vhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad 117 (160)
|++++.-|.+. -.|.-|..= .+|++.+++++|+=|+.+...+
T Consensus 33 wy~~L~kP~w~pp~~~f~~vW-tvLy~l~~iSa~lvW~~~~~~~ 75 (161)
T COG3476 33 WYNNLKKPFWLPPEWAFPPVW-TVLYALIGISAYLVWEKGPGQG 75 (161)
T ss_pred HHHhccCCCCCChHHHhhHHH-HHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999 788888887 8999999999999999876544
No 55
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=26.77 E-value=1.9e+02 Score=25.02 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=22.3
Q ss_pred HHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCCCCcC
Q 031384 122 AKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFE 159 (160)
Q Consensus 122 ~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI~E 159 (160)
.++..+=+-+|.++-..-..-..--+-.|+.+|-|+.+
T Consensus 248 ~~~l~kiP~~g~~~~~~~~~~f~~~Ls~Ll~sGi~l~~ 285 (399)
T TIGR02120 248 DRRLLRLPVIGRLVRGLNTARFARTLSILLSSGVPLLR 285 (399)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHCCCcHHH
Confidence 44555556777776655554444455556667766643
No 56
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.71 E-value=2.4e+02 Score=22.22 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=21.4
Q ss_pred HhHhhchhhHHHHHHHHHHhhhhhHhHHhhC
Q 031384 123 KAKDLHPKLLGGMFFFFALGATGGITSLLTS 153 (160)
Q Consensus 123 K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq 153 (160)
.+...|--+|-.-++++.+=++.|+.+....
T Consensus 73 hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P 103 (143)
T cd08763 73 DMYSLHSWCGILTFVLYFLQWLIGFSFFLFP 103 (143)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3556677777777777777777777765443
No 57
>PRK09821 putative transporter; Provisional
Probab=26.70 E-value=44 Score=30.98 Aligned_cols=59 Identities=15% Similarity=0.025 Sum_probs=35.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHh-hhheeeeeeCCHHHH-HHhHhhchhhHHHHHHHHHHhhhhhHh
Q 031384 85 LVHWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDDMEEK-AKAKDLHPKLLGGMFFFFALGATGGIT 148 (160)
Q Consensus 85 IvhwGHPlmM~wVLlamg~Ya~-YLGwQiR~tad~Evk-~K~~~~H~qlgs~lL~fMvLG~iGGMl 148 (160)
+.-+|||..- |+.-.+.|. .+|++ +..+.|+. ....+.=...|.+++.-=+-|+.|.++
T Consensus 271 l~fiG~p~iA---Llig~l~A~~~lg~~--~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg~VL 331 (454)
T PRK09821 271 LQLIGSPMVA---LLIALVLAFWLLALR--RGWSLQHTSDVMGSALPTAAVVILVTGAGGVFGKVL 331 (454)
T ss_pred HHHhCCHHHH---HHHHHHHHHHHHhhc--cCCcHHHHHHHHHHHHHhhhHhheeecChHHHHHHH
Confidence 3567999754 333334444 45655 34444444 445666667788888666667888776
No 58
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.69 E-value=39 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=23.6
Q ss_pred HHHhHhhchhhHHHHHHHHHHhhhhhHh
Q 031384 121 KAKAKDLHPKLLGGMFFFFALGATGGIT 148 (160)
Q Consensus 121 k~K~~~~H~qlgs~lL~fMvLG~iGGMl 148 (160)
|.|....|+.+|-+-.+.|++++++|+.
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~ 29 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALF 29 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 4578889999999999999988888754
No 59
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.43 E-value=1.3e+02 Score=23.61 Aligned_cols=71 Identities=15% Similarity=-0.013 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCCCCcCC
Q 031384 89 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER 160 (160)
Q Consensus 89 GHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI~ES 160 (160)
-||++|.+....+..-+.. -+|.+....+-.|......|--+....+.+.++|..-...+=-+.++|-|.|
T Consensus 23 ~Hp~~m~i~~~~l~~~~il-~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s 93 (183)
T cd08761 23 WHPLLMSLGFLLLMTEALL-LLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTS 93 (183)
T ss_pred hhHHHHHHHHHHHHHHHHH-HhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Confidence 4999995444433333333 2443322221344455567888888888888888666655555567776654
No 60
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=26.22 E-value=86 Score=27.14 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=18.2
Q ss_pred eecCchhHHHHhhCCC--chhhHHhhhhHHHHhhcCC--CC
Q 031384 46 YSIAPLPLLFDAALPG--AGTVRALFGPFVELVKSWN--LP 82 (160)
Q Consensus 46 ~s~~~~p~~~~a~~~g--~~~~~~~lePia~~f~sl~--LP 82 (160)
.+..-+|+++....-+ .--+.-++-=++..|.+++ +|
T Consensus 161 ~~al~YP~~ll~~~~~v~~~~~~~vlP~f~~~~~~~~~~lP 201 (399)
T PRK10573 161 KKALRYPLIILAVALLVVLAMLHFVLPEFAAIYRSFNTPLP 201 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCCCCC
Confidence 3333356665444444 2233333333456777776 55
No 61
>MTH00152 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=25.78 E-value=1.9e+02 Score=22.78 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHHHHHHHHh-hhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHH
Q 031384 87 HWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSL 150 (160)
Q Consensus 87 hwGHPlmM~wVLlamg~Ya~-YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSL 150 (160)
.-.||+.||..++..+.... ..|. ...+|.-..+-+-++|||+-+
T Consensus 19 ~~~~Pl~l~~~l~~~t~~~~~~~~~-------------------~~~~w~s~ilfli~iGGmlVl 64 (163)
T MTH00152 19 LSKQPLSLGLVLLLLSLFVCVEIGL-------------------TLSSWYGYLLFLVYVGGLLVM 64 (163)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHH-------------------HhHHHHHHHHHHHHHhHHHHH
Confidence 44699999888876665543 3333 123477677777788888754
No 62
>PF09678 Caa3_CtaG: Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG); InterPro: IPR019108 This entry represents the CtaG protein required for the assembly of active caa3-type cytochrome c oxidase in Bacillus subtilis, and related proteins.
Probab=25.26 E-value=97 Score=25.61 Aligned_cols=56 Identities=21% Similarity=0.031 Sum_probs=23.5
Q ss_pred hhHHHHhhCCCchhhHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhh
Q 031384 51 LPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTY 107 (160)
Q Consensus 51 ~p~~~~a~~~g~~~~~~~lePia~~f~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~Y 107 (160)
.|.+++.+.|..--.+.+=.+..++.+..-.-...--..||+.- +++|+...|.-|
T Consensus 64 aPpLLvlg~P~~l~~~~l~~~~~~~~~~~~~~~~~r~l~~P~va-~~lf~~~~~~wh 119 (244)
T PF09678_consen 64 APPLLVLGAPVTLLLRALPRRGRRWLRRALRSRVVRFLTHPLVA-LVLFAAVFWLWH 119 (244)
T ss_pred HHHHHHhcCcHHHHHhhCCcchHHHHHHHhhhHHHHHHhcHHHH-HHHHHHHHHHHH
Confidence 35555555665444433333333333333322222333444443 444444444443
No 63
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=25.21 E-value=1.6e+02 Score=25.60 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=43.9
Q ss_pred hhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHh
Q 031384 70 GPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGIT 148 (160)
Q Consensus 70 ePia~~f~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMl 148 (160)
.|+..|+.++++|+|...|.=|+.||++-|.-. ++.-+-. + ..+.+-..+=..+.++++.||....=.|+.
T Consensus 206 ~~f~~w~~dl~~~dp~~~~~~pii~gv~~f~q~----~ls~~~~--~--~~q~~~~~~~~~impi~f~~~~~~~PaGL~ 276 (314)
T COG0706 206 APFLGWITDLSLPDPDYILLLPILAGVTMFLQQ----KLSPRNL--S--TPQDPQQKKMMYIMPIIFTFFFFNFPAGLV 276 (314)
T ss_pred cchhhhhhcccCCCCchhhHHHHHHHHHHHHHH----HhccccC--C--cccCHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455588899999999887766777754433221 1111111 0 222334555567889999999888766654
No 64
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=25.20 E-value=59 Score=30.08 Aligned_cols=60 Identities=8% Similarity=-0.076 Sum_probs=35.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHh-hhheeeeeeCC-HHHHHHhHhhchhhHHHHHHHHHHhhhhhHhH
Q 031384 85 LVHWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDD-MEEKAKAKDLHPKLLGGMFFFFALGATGGITS 149 (160)
Q Consensus 85 IvhwGHPlmM~wVLlamg~Ya~-YLGwQiR~tad-~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlS 149 (160)
+..+|||..- |+.-.+.+. .+|++ +..+ ++...-..+.=...|.++|..=+-|+.|+++.
T Consensus 256 l~f~G~p~iA---Llig~l~a~~~lg~~--~~~~~~~~~~~~~~al~~~g~IlLI~gaGGafg~VL~ 317 (438)
T PRK14984 256 AEFLGDPVMA---TLIAVLIAMFTFGLN--RGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLV 317 (438)
T ss_pred HHHhCCHHHH---HHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 3556999754 444445555 34455 3334 33333355555667777777777788888863
No 65
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=24.55 E-value=47 Score=25.33 Aligned_cols=39 Identities=10% Similarity=-0.101 Sum_probs=23.7
Q ss_pred HhhcCCCCchhh----hhhhhHHHHHHHHHHHHHHhhhheeeee
Q 031384 75 LVKSWNLPDWLV----HWGHPGNMAVVLFAMGGYGTYLGFCIRY 114 (160)
Q Consensus 75 ~f~sl~LPE~Iv----hwGHPlmM~wVLlamg~Ya~YLGwQiR~ 114 (160)
.++.+-+|++|+ -||--++- ++++++.++..|.-++-++
T Consensus 4 ~L~DI~~P~~vswwP~a~GWwll~-~lll~~~~~~~~~~~r~~~ 46 (146)
T PF14316_consen 4 QLRDIHLPPPVSWWPLAPGWWLLL-ALLLLLLILLLWRLWRRWR 46 (146)
T ss_pred ccCCCCCCCCCCCCCccHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 457788999995 56666666 4444444555555554443
No 66
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.27 E-value=1.6e+02 Score=22.82 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=29.0
Q ss_pred CCCCchh--hhhhhhHHHHHHHHHHHHHHh-hhheeeeeeCCHHHH
Q 031384 79 WNLPDWL--VHWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDDMEEK 121 (160)
Q Consensus 79 l~LPE~I--vhwGHPlmM~wVLlamg~Ya~-YLGwQiR~tad~Evk 121 (160)
+.+|||+ +-=--|. ..+++.|+|+. -+|+++-..+|.|+.
T Consensus 31 ~~Leeplscl~~y~P~---~~~l~~G~Ya~~tv~Y~VATfnDc~eA 73 (95)
T KOG4841|consen 31 LGLEEPLSCLEVYWPL---YLLLSAGCYALGTVGYRVATFNDCEEA 73 (95)
T ss_pred ccCcccHHHHHhhhHH---HHHHHHHhHhhhhheeeeeccCCcHHH
Confidence 5777777 2223465 44788999996 689998877888877
No 67
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=24.25 E-value=25 Score=24.99 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHhhcCCCCchh--------hhhhhhHHHHHHHHHHHHHHhh
Q 031384 73 VELVKSWNLPDWL--------VHWGHPGNMAVVLFAMGGYGTY 107 (160)
Q Consensus 73 a~~f~sl~LPE~I--------vhwGHPlmM~wVLlamg~Ya~Y 107 (160)
-++++++.||+++ ..|.|=+-- .+..+.-+|.+|
T Consensus 13 P~YL~~lPiP~s~gg~f~Ls~kdWl~Lvp~-~~~va~igYlay 54 (64)
T PF10660_consen 13 PNYLKSLPIPDSFGGFFKLSVKDWLALVPF-AAAVAGIGYLAY 54 (64)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccccccccccccHHHHHHHHhH-HHHHHHHHHHhh
Confidence 4678889999988 456664443 233333344444
No 68
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=23.41 E-value=1.4e+02 Score=20.56 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHh-----hhheeeeeeCCH--H--HH----HHhH-hhchhhHHHHHHHHHHhh
Q 031384 94 MAVVLFAMGGYGT-----YLGFCIRYSDDM--E--EK----AKAK-DLHPKLLGGMFFFFALGA 143 (160)
Q Consensus 94 M~wVLlamg~Ya~-----YLGwQiR~tad~--E--vk----~K~~-~~H~qlgs~lL~fMvLG~ 143 (160)
+|++++++|.... .+|...+...+. + .+ +=|| .|||.-.+.++.++...-
T Consensus 5 ~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l 68 (106)
T PF04191_consen 5 LGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIAL 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHH
Confidence 4555555555443 345544443322 1 11 5566 699998888777765543
No 69
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=23.23 E-value=1.5e+02 Score=27.36 Aligned_cols=44 Identities=23% Similarity=0.118 Sum_probs=34.5
Q ss_pred HHHHHHhhhheeeeee--CCHHHH-HHhHhhchhhHHHHHHHHHHhhh
Q 031384 100 AMGGYGTYLGFCIRYS--DDMEEK-AKAKDLHPKLLGGMFFFFALGAT 144 (160)
Q Consensus 100 amg~Ya~YLGwQiR~t--ad~Evk-~K~~~~H~qlgs~lL~fMvLG~i 144 (160)
++|..+.-|++|+... +|+..- +||+ +.++.|-+++.=+|++++
T Consensus 299 ~lg~~~~~L~~~i~~vdiDnp~dC~k~f~-sN~ntGli~~~~i~~d~l 345 (353)
T KOG1381|consen 299 ALGAVAARLGSQIYKVDIDNPSDCWKKFK-SNSNTGLILFSGIVLDTL 345 (353)
T ss_pred HHHHHHHHHHhheeeeecCChHHHHHHHH-hcCcchHHHHHHHHHHHH
Confidence 3788899999999988 566555 5555 455789999999999875
No 70
>MTH00015 ND6 NADH dehydrogenase subunit 6; Validated
Probab=23.23 E-value=2.3e+02 Score=22.06 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=27.9
Q ss_pred hhhhhHHHHHHHHHHHHHHh-hhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHH
Q 031384 87 HWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSL 150 (160)
Q Consensus 87 hwGHPlmM~wVLlamg~Ya~-YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSL 150 (160)
.-.||+.||..++..+.... .+|.. .-+|.-..+.+=++|||+=+
T Consensus 19 ~~~~Pl~mg~~li~~tl~~~~~~~~~-------------------~~sW~syilfLI~iGGmLVl 64 (155)
T MTH00015 19 LATTPITLGINILMMALLLATTMASA-------------------LSSWFAFLTFLIYVGGMLVM 64 (155)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhHHHHH
Confidence 45699999999887776554 33331 12255555555577887644
No 71
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=23.12 E-value=52 Score=22.44 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhhhee
Q 031384 92 GNMAVVLFAMGGYGTYLGFC 111 (160)
Q Consensus 92 lmM~wVLlamg~Ya~YLGwQ 111 (160)
+.++.+|+++.+|+.|.++-
T Consensus 12 i~i~~lL~~~TgyaiYtaFG 31 (46)
T PRK13183 12 ITILAILLALTGFGIYTAFG 31 (46)
T ss_pred HHHHHHHHHHhhheeeeccC
Confidence 34557888999999998774
No 72
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=23.03 E-value=96 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhch
Q 031384 96 VVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHP 129 (160)
Q Consensus 96 wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~ 129 (160)
++..+.-+|+.|.=+|-| +|||=|.|-+.+.+
T Consensus 15 ~a~~~flgYciYFD~KRR--~dPdFRkkLr~rr~ 46 (148)
T TIGR00985 15 IAAAAFLGYAIYFDYKRR--NDPDFRKKLRRRRK 46 (148)
T ss_pred HHHHHHHHHHHhhhhhhc--cCHHHHHHHHHHHH
Confidence 334445567777766544 88988866554443
No 73
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=23.02 E-value=1.3e+02 Score=17.94 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=18.9
Q ss_pred HHHhHhhchhhHHHHHHHHHH-hhhhhHh
Q 031384 121 KAKAKDLHPKLLGGMFFFFAL-GATGGIT 148 (160)
Q Consensus 121 k~K~~~~H~qlgs~lL~fMvL-G~iGGMl 148 (160)
|+..++-|.-+|-+...++.+ +.+|..+
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l 30 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALL 30 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899998887766654 4444444
No 74
>COG1971 Predicted membrane protein [Function unknown]
Probab=22.80 E-value=1.2e+02 Score=25.71 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=41.3
Q ss_pred hhHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeee
Q 031384 64 TVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRY 114 (160)
Q Consensus 64 ~~~~~lePia~~f~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~ 114 (160)
.+-+.+.|.+-|+-..-+|..+.+|-|=+-- ..|..+|.|..|-|+|-+.
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf-~lL~~lG~~mI~e~f~~~~ 93 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGF-VLLIILGLKMIIEGFKNEE 93 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhchhh
Confidence 4567888999999988888888888886655 7888999999999998743
No 75
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=22.70 E-value=1.7e+02 Score=28.62 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHh
Q 031384 89 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKD 126 (160)
Q Consensus 89 GHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~ 126 (160)
..|.|| +.|-+.+ +|+|. ++++|.|+|.+.
T Consensus 233 ~~~~~m-Fglpgaa-lAmy~------~A~~e~rk~v~~ 262 (648)
T PRK10255 233 FFPIMM-FGLPGAA-LAMYF------AAPKERRPMVGG 262 (648)
T ss_pred chHHHH-HHHHHHH-HHHHH------hcCHHHHHHHHH
Confidence 467888 7777776 88885 588998877654
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=22.61 E-value=2.7e+02 Score=21.39 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCCCC
Q 031384 93 NMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPI 157 (160)
Q Consensus 93 mM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI 157 (160)
||+|+.+.+++..-..|=-. -|+.+.+.+...+.+.+...+.-=-.+|++++.-|+
T Consensus 1 ~m~wl~L~~Ai~~Ev~~t~~---------LK~s~g~~~~~~~~~~i~~~~~sf~~ls~al~~lpl 56 (120)
T PRK10452 1 MIYWILLALAIATEITGTLS---------MKWASVSEGNGGFILMLVMISLSYIFLSFAVKKIAL 56 (120)
T ss_pred CchHHHHHHHHHHHHHHHHH---------HHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 68899998887654333111 122111222333333333333344467777776664
No 77
>MTH00212 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=21.58 E-value=1.8e+02 Score=22.99 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhh-hheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHH
Q 031384 87 HWGHPGNMAVVLFAMGGYGTY-LGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSL 150 (160)
Q Consensus 87 hwGHPlmM~wVLlamg~Ya~Y-LGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSL 150 (160)
.-.||+.||..++..+...+. +|. ...+|.-..+.+=++|||+=+
T Consensus 19 ~~~hP~~~~~~li~~t~~~~~~~~~-------------------~~~sw~s~ilfli~iGGmlVl 64 (160)
T MTH00212 19 LSAHPLTLGVSLLLSSLLSCLIITM-------------------ESNSWYGYILFLIYIGGLLVL 64 (160)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhHHHHH
Confidence 346999999988877766653 332 112366666666778887643
No 78
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=21.57 E-value=2.1e+02 Score=23.11 Aligned_cols=67 Identities=18% Similarity=0.091 Sum_probs=40.1
Q ss_pred hhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhh
Q 031384 76 VKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGAT 144 (160)
Q Consensus 76 f~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~i 144 (160)
....++|+-+.||.+=+.+ ++|+..|.+-.|=+...=...-++ ..-.|.-|+-.|-++++.+++-.+
T Consensus 7 i~r~~~~~Ri~HW~~a~s~-~~L~~TGl~i~~p~~~~~~~~~g~-~~~~r~iH~~~g~i~~~~~~~~~~ 73 (211)
T PRK10639 7 IVRYTAPERINHWIVAFCF-ILAAVSGLGFFFPSFNWLMNILGT-PQLARILHPFVGVVMFASFIIMFF 73 (211)
T ss_pred EEEcCHHHHHHHHHHHHHH-HHHHHHHHHHHcchHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999998888 777776665332111100000000 134566799988888877766543
No 79
>CHL00020 psbN photosystem II protein N
Probab=21.43 E-value=51 Score=22.14 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhhee
Q 031384 92 GNMAVVLFAMGGYGTYLGFC 111 (160)
Q Consensus 92 lmM~wVLlamg~Ya~YLGwQ 111 (160)
+.++.+|++..+|+.|.++-
T Consensus 9 i~i~~ll~~~Tgy~iYtaFG 28 (43)
T CHL00020 9 IFISGLLVSFTGYALYTAFG 28 (43)
T ss_pred HHHHHHHHHhhheeeeeccC
Confidence 34567888999999998774
No 80
>MTH00064 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=21.24 E-value=1.2e+02 Score=24.69 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhh-heeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHH
Q 031384 87 HWGHPGNMAVVLFAMGGYGTYL-GFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSL 150 (160)
Q Consensus 87 hwGHPlmM~wVLlamg~Ya~YL-GwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSL 150 (160)
.-.||+.|+..++..+...+.+ +.- .--+|.-..+.+=++|||+=+
T Consensus 19 ~~~~Plsl~l~Li~~tl~~s~~i~~~------------------~~ssWysyiLfLIyiGGmlVL 65 (151)
T MTH00064 19 FSSHPVYYCVLLVVNSLISSLICYLV------------------YGFSWYSLLFCLVYVGGVYIL 65 (151)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHH------------------HHhHHHHHHHHHHHHhHHHHH
Confidence 4469999988887777665433 220 011577777777788898744
No 81
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=20.99 E-value=78 Score=24.80 Aligned_cols=61 Identities=23% Similarity=0.206 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhh-CCCCC
Q 031384 96 VVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLT-SDKPI 157 (160)
Q Consensus 96 wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvm-q~kPI 157 (160)
...+.|..|+-| =|+-++.++.|.+.|.-.+..-+..+...+.+.+.++=++..+. +..|.
T Consensus 53 ~~~~~~~i~G~~-~W~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (181)
T PF04973_consen 53 LFYFIMSIYGWY-QWKKGRDENDEVKVRRLSKKQWILLLIGILIGTAIFGFILKFLTDSPFPW 114 (181)
T ss_pred HHHHHHHHHHHH-HHHhhhccCcccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 445556666655 46622224455554333333334444444445555555555554 33443
No 82
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=20.98 E-value=33 Score=25.02 Aligned_cols=11 Identities=64% Similarity=1.349 Sum_probs=8.8
Q ss_pred HHHHHHHHhhh
Q 031384 98 LFAMGGYGTYL 108 (160)
Q Consensus 98 Llamg~Ya~YL 108 (160)
.|+||+||-|.
T Consensus 9 FfaMGgyafyV 19 (67)
T COG3114 9 FFAMGGYAFYV 19 (67)
T ss_pred HHHccCchHHH
Confidence 47899999874
No 83
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=20.93 E-value=32 Score=26.72 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchh
Q 031384 95 AVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPK 130 (160)
Q Consensus 95 ~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~q 130 (160)
|++..+.-+|+.|.=.|-| +||+=|.|-+.++.+
T Consensus 4 g~a~~~~lgYciYFD~KRR--~dP~frkkL~~rrk~ 37 (121)
T PF02064_consen 4 GVAAAAFLGYCIYFDYKRR--SDPDFRKKLRERRKK 37 (121)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHhhcccccc--cChHHHHHHHHHHHH
Confidence 4455566677777666544 788888666665554
No 84
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=20.60 E-value=1e+02 Score=20.55 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=19.5
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHhhhhe
Q 031384 80 NLPDWLVHWGHPGNMAVVLFAMGGYGTYLGF 110 (160)
Q Consensus 80 ~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGw 110 (160)
.||=|++--.--+.- +.++++-+|++|-|.
T Consensus 7 RIPLWlVgtv~G~~v-i~lvglFfYGsYsGl 36 (40)
T PF01788_consen 7 RIPLWLVGTVAGIAV-IGLVGLFFYGSYSGL 36 (40)
T ss_dssp SS-HHHHHHHHHHHH-HHHHHHHHHCTTTST
T ss_pred cccchHHHHHHHHHH-HHHHHHheecccCCc
Confidence 467666444444444 778888899999885
No 85
>COG2855 Predicted membrane protein [Function unknown]
Probab=20.21 E-value=2.4e+02 Score=25.71 Aligned_cols=105 Identities=20% Similarity=0.139 Sum_probs=67.1
Q ss_pred hhcccccceeeecCchhHHHHhhCC-------CchhhHHhhhh-------HHHHhhcCCC-CchhhhhhhhHHHHHHHHH
Q 031384 36 EMEKPRETLLYSIAPLPLLFDAALP-------GAGTVRALFGP-------FVELVKSWNL-PDWLVHWGHPGNMAVVLFA 100 (160)
Q Consensus 36 ~~~~~~~t~l~s~~~~p~~~~a~~~-------g~~~~~~~leP-------ia~~f~sl~L-PE~IvhwGHPlmM~wVLla 100 (160)
--.-.|-+|..-++|+-+++..-.. |..+ +...=| ..+.++|+.+ |+.++++.-.+-. .+++
T Consensus 213 ~A~ivKl~RV~mLaPv~l~ls~~~~~~~~~~~~~~~-~~~~iPwFi~gFl~~a~lnS~~~iP~~~~~~~~~lst--~ll~ 289 (334)
T COG2855 213 TATIVKLIRVLMLAPVLLILSLILRRQSGAGSGSKG-LKITIPWFILGFLLVALLNSLGLIPAEVVSALVTLST--FLLA 289 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC-CCCCCCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH--HHHH
Confidence 3455667788778877666544333 1122 122223 3466788887 9888888877765 4566
Q ss_pred HHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhH
Q 031384 101 MGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITS 149 (160)
Q Consensus 101 mg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlS 149 (160)
|+.-|.=++- |--.-.|...|+--++...+.+.+.+..+....
T Consensus 290 ~aMaAlGL~t------~i~~l~~~G~kpl~la~~~~~~l~~~~l~l~~~ 332 (334)
T COG2855 290 MAMAALGLTT------HIKALKKAGGKPLLLALLLWVFLVVGGLALNLL 332 (334)
T ss_pred HHHHHhcccc------CHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666643332 222336778888889999999999888877554
No 86
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=20.09 E-value=84 Score=29.20 Aligned_cols=83 Identities=19% Similarity=0.214 Sum_probs=50.7
Q ss_pred CchhHHHHhhCCCchhhHHhhh-hHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeee-CCHHHHHHhHh
Q 031384 49 APLPLLFDAALPGAGTVRALFG-PFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYS-DDMEEKAKAKD 126 (160)
Q Consensus 49 ~~~p~~~~a~~~g~~~~~~~le-Pia~~f~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~t-ad~Evk~K~~~ 126 (160)
+-+-.+..|-.|=++....+++ |+.-.+-++.+..++.||..-.+|++-.| +.|..+||- ..+|-+..-|.
T Consensus 25 a~~~Ali~ANs~~~~~Y~~~~~~~~~~~~~~~~~~~~l~~wiNDgLMaiFFf-------~vGLEiKrE~~~GeL~~~~~a 97 (423)
T PRK14853 25 AAVAALIWANSPWGDSYFALRDFKLGPEPGGLHLSLSLGTWAADGLLAIFFF-------VVGLELKREFVAGDLRDPSRA 97 (423)
T ss_pred HHHHHHHHHhCCcHHHHHHHHcCccccccccccCCCCHHHHHHHhhHHHHHH-------HHHHHHhHHHhccchhhHHHH
Confidence 3344455566665666666665 34434446678888999999999954444 456677766 55665543322
Q ss_pred hchhhHHHHHHHHHHhhhhhHh
Q 031384 127 LHPKLLGGMFFFFALGATGGIT 148 (160)
Q Consensus 127 ~H~qlgs~lL~fMvLG~iGGMl 148 (160)
++=+++++|||+
T Consensus 98 ----------~lP~~aAlGGm~ 109 (423)
T PRK14853 98 ----------ALPVAAALGGMI 109 (423)
T ss_pred ----------HHHHHHHHHhHH
Confidence 222456777775
Done!