Query 031384
Match_columns 160
No_of_seqs 76 out of 78
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 21:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h88_D Succinate dehydrogenase 64.1 4.6 0.00016 29.2 2.7 59 89-155 31-91 (103)
2 3vr8_D Succinate dehydrogenase 28.4 29 0.001 27.3 2.2 65 90-156 81-145 (156)
3 3c01_A Surface presentation of 26.6 32 0.0011 22.2 1.8 18 116-133 15-32 (48)
4 1l8n_A Alpha-D-glucuronidase; 26.3 29 0.001 32.9 2.2 33 60-92 559-592 (679)
5 1gqi_A Alpha-glucuronidase; (a 26.1 32 0.0011 32.8 2.3 34 59-92 558-592 (708)
6 4gd3_A NI/Fe-hydrogenase 1 B-t 23.8 1.3E+02 0.0044 23.0 5.1 62 77-141 12-76 (235)
7 3arc_J Photosystem II reaction 22.9 64 0.0022 20.6 2.6 31 79-110 6-36 (40)
8 3bzy_A ESCU; auto cleavage pro 22.1 43 0.0015 22.2 1.8 18 116-133 21-38 (54)
9 1kqf_C FDH-N gamma, formate de 17.5 91 0.0031 23.3 2.9 62 78-141 9-70 (217)
10 2o35_A Hypothetical protein DU 17.0 26 0.0009 26.3 -0.2 31 103-133 72-105 (105)
No 1
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=64.07 E-value=4.6 Score=29.17 Aligned_cols=59 Identities=14% Similarity=0.011 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhheeeeeeC--CHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCC
Q 031384 89 GHPGNMAVVLFAMGGYGTYLGFCIRYSD--DMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK 155 (160)
Q Consensus 89 GHPlmM~wVLlamg~Ya~YLGwQiR~ta--d~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~k 155 (160)
.+|+++ ..+.+...|=+++|+|.=..+ -++.. +++.-+++.++...+..|+.-+-+++-
T Consensus 31 ~~pv~d-~~l~~~l~~H~~~G~q~vI~DYv~~~~~-------~~~~~~~~~~~s~~t~~Gl~~~~~~d~ 91 (103)
T 2h88_D 31 PGPAVD-YSLAAALTLHGHWGLGQVITDYVHGDTP-------IKVANTGLYVLSAITFTGLCYFNYYDV 91 (103)
T ss_dssp CSHHHH-HHHHHHHHHHHHHHHHHHHHHHCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CcHHHH-HHHHHHHHHHHHHhcCeeeecccccchH-------HHHHHHHHHHHHHHHHHHHheeeecCC
Confidence 368888 888888888999999976552 22221 245566677777778888877766653
No 2
>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit, mitochondrial; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_D*
Probab=28.37 E-value=29 Score=27.30 Aligned_cols=65 Identities=11% Similarity=-0.067 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCCC
Q 031384 90 HPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKP 156 (160)
Q Consensus 90 HPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~kP 156 (160)
+|+++ .++.+...+=+++|+|.=.++ =--+.++...-+|++-+++..+..-+..|+.-+-+++-=
T Consensus 81 ~pvlD-~lLa~al~~H~h~GfqsvI~D-YVp~rv~g~~~~K~A~~lL~~~s~~tl~GLy~f~t~dvG 145 (156)
T 3vr8_D 81 GREMD-LCLALALTLHVHWGVWGVVND-YGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNEHDVG 145 (156)
T ss_dssp SHHHH-HHHHHHHHHHHHHHHHHHHHH-HSCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred CHHHH-HHHHHHHHHHHHHhhhhhhhe-ecchhhcCchHHHHHHHHHHHHHHHHHHHheEeeecCcc
Confidence 68888 777777888899999976442 111123333346888888888888889998888776643
No 3
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=26.57 E-value=32 Score=22.25 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=16.4
Q ss_pred CCHHHHHHhHhhchhhHH
Q 031384 116 DDMEEKAKAKDLHPKLLG 133 (160)
Q Consensus 116 ad~Evk~K~~~~H~qlgs 133 (160)
.||++|++-|+.|++++.
T Consensus 15 GdP~iK~~~R~~~~e~a~ 32 (48)
T 3c01_A 15 GNPEVKSKRREVHMEILS 32 (48)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 699999999999999875
No 4
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus stearothermophilus} SCOP: c.1.8.10 d.92.2.2 PDB: 1k9d_A* 1mqq_A* 1mqp_A 1mqr_A* 1k9f_A* 1k9e_A*
Probab=26.29 E-value=29 Score=32.90 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCchhhHHhhhhHHHHhhcCCC-CchhhhhhhhH
Q 031384 60 PGAGTVRALFGPFVELVKSWNL-PDWLVHWGHPG 92 (160)
Q Consensus 60 ~g~~~~~~~lePia~~f~sl~L-PE~IvhwGHPl 92 (160)
-|+....+|-.|+++.+.+++- ||.++=|+|=+
T Consensus 559 tGt~~~~QY~~~~a~~y~~~~tcPdelLL~FHhv 592 (679)
T 1l8n_A 559 TGTGYTAQYFPENAAMYESLDTCPDELLLFFHHV 592 (679)
T ss_dssp TSCCGGGGSCHHHHHHHHSTTTSCGGGHHHHCCE
T ss_pred CCCCchhccCHHHHHHhCCcccCcHHHhhhhccC
Confidence 4788999999999999999986 99998888743
No 5
>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase; 1.48A {Pseudomonas cellulosa} SCOP: c.1.8.10 d.92.2.2 PDB: 1gqj_A* 1gqk_A* 1gql_A* 1h41_A*
Probab=26.09 E-value=32 Score=32.82 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=29.5
Q ss_pred CCCchhhHHhhhhHHHHhhcCCC-CchhhhhhhhH
Q 031384 59 LPGAGTVRALFGPFVELVKSWNL-PDWLVHWGHPG 92 (160)
Q Consensus 59 ~~g~~~~~~~lePia~~f~sl~L-PE~IvhwGHPl 92 (160)
.-|+....++-.|+++.+.+++- ||.++=|+|=+
T Consensus 558 ~tGt~~~~QY~~~~a~~y~~~~tcPdelLLwFHhv 592 (708)
T 1gqi_A 558 KTGSNALAQYPEPIAKAWGDLNSVPEDLILWFHHL 592 (708)
T ss_dssp TTTTCGGGGSCHHHHHHHHSTTTSCGGGGGGTCCE
T ss_pred CCCCCchhccCHHHHHHhcCcccCcHHHhhhhccC
Confidence 35788999999999999999986 99998888844
No 6
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=23.83 E-value=1.3e+02 Score=23.00 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=37.9
Q ss_pred hcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHH---HHHhHhhchhhHHHHHHHHHH
Q 031384 77 KSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEE---KAKAKDLHPKLLGGMFFFFAL 141 (160)
Q Consensus 77 ~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Ev---k~K~~~~H~qlgs~lL~fMvL 141 (160)
+..+.|.-+.||.-=+.+ +++++.|.|-.+.-.. ...++.. .+..+.-|.-+|-.+++++++
T Consensus 12 ~~y~~~~R~~HW~~a~~i-i~l~~tG~~~~~~~~~--~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~ 76 (235)
T 4gd3_A 12 YVFEAPVRIWHWLTVLCM-AVLMVTGYFIGKPLPS--VSGEATYLFYMGYIRLIHFSAGMVFTVVLLM 76 (235)
T ss_dssp CCCCCCTTHHHHHHHHHH-HHHHHHHHHHHSCCCC--CCSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecChHHHHHHHHHHHHH-HHHHHHHHHhcCcccc--ccCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999877777 6666666554332100 0012211 144677899999888887765
No 7
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=22.90 E-value=64 Score=20.57 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=21.2
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHhhhhe
Q 031384 79 WNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGF 110 (160)
Q Consensus 79 l~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGw 110 (160)
-.||-|++--.-.+.- +.++.+-+|++|.|.
T Consensus 6 GRiPLWlvgtv~G~~v-i~~~giFfyGsYsGl 36 (40)
T 3arc_J 6 GRIPLWIVATVAGMGV-IVIVGLFFYGAYAGL 36 (40)
T ss_dssp TSSCHHHHHHHHHHHH-HHHHHHHHHHHSSST
T ss_pred CcccEEeeeeehhhhh-hheeeEEEeeccccc
Confidence 3567777444444444 778888899999885
No 8
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=22.11 E-value=43 Score=22.16 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=16.3
Q ss_pred CCHHHHHHhHhhchhhHH
Q 031384 116 DDMEEKAKAKDLHPKLLG 133 (160)
Q Consensus 116 ad~Evk~K~~~~H~qlgs 133 (160)
.||++|++.|+.|++++.
T Consensus 21 GdP~iK~r~R~~~re~a~ 38 (54)
T 3bzy_A 21 GNPEIKGERRRLHSEIQS 38 (54)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 699999999999999875
No 9
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=17.49 E-value=91 Score=23.30 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=35.7
Q ss_pred cCCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHH
Q 031384 78 SWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFAL 141 (160)
Q Consensus 78 sl~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvL 141 (160)
..+.|.-+.||..=+.+ +++++.|.|-. .....-..+....++..+.-|.-+|-.+++++++
T Consensus 9 ~~~~~~R~~HW~~a~~i-i~l~~tG~~i~-~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~ 70 (217)
T 1kqf_C 9 RTKFIDRACHWTVVICF-FLVALSGISFF-FPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMF 70 (217)
T ss_dssp CSCHHHHHHHHHHHHHH-HHHHHHHHHHH-CTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHH-HHHHHHHHHHH-chhHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 35566667999988877 66666555432 1110000000011345678899999888877654
No 10
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=16.97 E-value=26 Score=26.32 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=8.3
Q ss_pred HHHh-hhheeeeee--CCHHHHHHhHhhchhhHH
Q 031384 103 GYGT-YLGFCIRYS--DDMEEKAKAKDLHPKLLG 133 (160)
Q Consensus 103 ~Ya~-YLGwQiR~t--ad~Evk~K~~~~H~qlgs 133 (160)
+|++ |--|+.+.- +++|+.+.|..++.+-||
T Consensus 72 vYGMpy~eWKa~~Q~eAt~eQ~aaf~~~~~~~~~ 105 (105)
T 2o35_A 72 VYGMPYEEWRTQNQGEASPEQKAAFERNRPKEGS 105 (105)
T ss_dssp HHSSCHHHHTC-----------------------
T ss_pred HhCCCHHHHHHHHCCCCCHHHHHHHHHhccccCC
Confidence 5777 888999865 799999999988887664
Done!