Query 031384
Match_columns 160
No_of_seqs 76 out of 78
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 21:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031384.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031384hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l8na1 c.1.8.10 (A:143-678) a 19.5 23 0.0017 30.7 2.2 33 60-92 417-450 (536)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 18.9 46 0.0034 19.1 2.8 15 96-110 16-30 (34)
3 d1h41a1 c.1.8.10 (A:152-712) a 18.9 26 0.0019 30.6 2.3 33 60-92 412-445 (561)
4 d2oo3a1 c.66.1.59 (A:9-279) Un 16.5 15 0.0011 28.8 0.2 20 2-21 148-169 (271)
5 d1v54b2 f.17.2.1 (B:1-90) Mito 16.1 48 0.0035 21.2 2.7 24 86-110 20-43 (90)
6 d1y5ic1 f.21.3.1 (C:1-225) Res 13.9 1E+02 0.0076 21.9 4.4 74 67-144 69-142 (225)
7 d1rzsa_ a.35.1.2 (A:) cro p22 12.3 30 0.0022 22.0 0.7 26 65-90 6-32 (61)
8 d1s3si_ d.15.1.2 (I:) p47 {Rat 11.7 22 0.0016 21.9 -0.1 20 110-129 22-41 (50)
9 d1v54c_ f.25.1.1 (C:) Mitochon 11.5 39 0.0029 25.3 1.3 78 44-138 7-86 (259)
10 d1jb0k_ f.30.1.1 (K:) Photosys 10.5 48 0.0035 20.9 1.3 24 73-96 29-54 (58)
No 1
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=19.48 E-value=23 Score=30.72 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCchhhHHhhhhHHHHhhcCCC-CchhhhhhhhH
Q 031384 60 PGAGTVRALFGPFVELVKSWNL-PDWLVHWGHPG 92 (160)
Q Consensus 60 ~g~~~~~~~lePia~~f~sl~L-PE~IvhwGHPl 92 (160)
-|+....++-.|+++.+.+++- ||.++=|+|=+
T Consensus 417 tGtg~~~QY~~~~a~~ye~~~tcPdelLLwFHHV 450 (536)
T d1l8na1 417 TGTGYTAQYFPENAAMYESLDTCPDELLLFFHHV 450 (536)
T ss_dssp TSCCGGGGSCHHHHHHHHSTTTSCGGGHHHHCCE
T ss_pred CCCCccccCChHHHHHhCCcccCchhHheecccC
Confidence 4888899999999999999976 99998888854
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.88 E-value=46 Score=19.12 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhe
Q 031384 96 VVLFAMGGYGTYLGF 110 (160)
Q Consensus 96 wVLlamg~Ya~YLGw 110 (160)
+.++.+=+|++|.|.
T Consensus 16 i~~vG~FfYGsYsGl 30 (34)
T d2axtj1 16 IVIVGLFFYGAYAGL 30 (34)
T ss_dssp HHHHHHHHHHTTTST
T ss_pred Hhheeeeeeeeeccc
Confidence 567777789999885
No 3
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=18.86 E-value=26 Score=30.56 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.1
Q ss_pred CCchhhHHhhhhHHHHhhcCCC-CchhhhhhhhH
Q 031384 60 PGAGTVRALFGPFVELVKSWNL-PDWLVHWGHPG 92 (160)
Q Consensus 60 ~g~~~~~~~lePia~~f~sl~L-PE~IvhwGHPl 92 (160)
-|+....++-.|+++.+.+++- ||.++=|+|=+
T Consensus 412 tGtg~~~QY~~~~a~~ye~~~tcPdelLLwFHHV 445 (561)
T d1h41a1 412 TGSNALAQYPEPIAKAWGDLNSVPEDLILWFHHL 445 (561)
T ss_dssp TTTCGGGGSCHHHHHHHHSTTTSCGGGGGGTCCE
T ss_pred CCCCchhcCCHHHHHHhCCcccCchHHhhhhccC
Confidence 5788899999999999999976 99998888854
No 4
>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}
Probab=16.49 E-value=15 Score=28.80 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=15.6
Q ss_pred cccccccc--cccccccccccc
Q 031384 2 KERRGLLC--RSFALKNEVIET 21 (160)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~~~ 21 (160)
+|||||++ |||..|+|.-.+
T Consensus 148 ~~rRgLVLIDPpYE~k~ey~~v 169 (271)
T d2oo3a1 148 PEKRGLIFIDPSYERKEEYKEI 169 (271)
T ss_dssp TTSCEEEEECCCCCSTTHHHHH
T ss_pred CCCceEEEecCCcCCHHHHHHH
Confidence 68999887 999998765443
No 5
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.11 E-value=48 Score=21.19 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=17.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhe
Q 031384 86 VHWGHPGNMAVVLFAMGGYGTYLGF 110 (160)
Q Consensus 86 vhwGHPlmM~wVLlamg~Ya~YLGw 110 (160)
..|+|-..| +++..+.....|+-.
T Consensus 20 i~~fHd~~m-~i~~~I~~~V~~~~~ 43 (90)
T d1v54b2 20 LLHFHDHTL-MIVFLISSLVLYIIS 43 (90)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 788999888 777777777766543
No 6
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=13.94 E-value=1e+02 Score=21.88 Aligned_cols=74 Identities=12% Similarity=-0.118 Sum_probs=37.3
Q ss_pred HhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhh
Q 031384 67 ALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGAT 144 (160)
Q Consensus 67 ~~lePia~~f~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~i 144 (160)
..+.| +++....+++...++.--... .++++-.-++-.+.=.||-.+++.|.+.+...+-+-.++++.++.|..
T Consensus 69 g~l~~--~~~~~~~~~~~~~~~~~~~~g--~i~g~l~liG~~~ll~RR~~~~~~r~~~~~~d~~~L~ll~~i~~tG~~ 142 (225)
T d1y5ic1 69 GMLTP--HWMYEAWLPIEVAQKMAMFAG--GASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLL 142 (225)
T ss_dssp HHHC----------CCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHSHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh--HHHHHHcCchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHH
Confidence 34555 345556677655544322221 112222222233334678888888877666666677777777777765
No 7
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=12.35 E-value=30 Score=22.03 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=18.9
Q ss_pred hHHhhhhHHHHhhcCCC-Cchhhhhhh
Q 031384 65 VRALFGPFVELVKSWNL-PDWLVHWGH 90 (160)
Q Consensus 65 ~~~~lePia~~f~sl~L-PE~IvhwGH 90 (160)
+-.+|.-+....+.++| |+.|++||-
T Consensus 6 vi~~FG~~~k~A~algis~~AVsqWGe 32 (61)
T d1rzsa_ 6 VIDHFGTQRAVAKALGISDAAVSQWKE 32 (61)
T ss_dssp HHHHHSSHHHHHHHHTCCHHHHHHCCS
T ss_pred HHHHhCCHHHHHHHhCCCHHHHHHHhc
Confidence 34566666677777888 778899985
No 8
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.74 E-value=22 Score=21.93 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=3.1
Q ss_pred eeeeeeCCHHHHHHhHhhch
Q 031384 110 FCIRYSDDMEEKAKAKDLHP 129 (160)
Q Consensus 110 wQiR~tad~Evk~K~~~~H~ 129 (160)
+|+|+.+..-..++||..|.
T Consensus 22 iQiRL~dG~R~v~rFN~~Ht 41 (50)
T d1s3si_ 22 IQIRLADGGRLVQKFNHSHR 41 (50)
T ss_dssp ----------------CCCC
T ss_pred EEEEeCCCCEEEEEccCccC
Confidence 79998877777799998885
No 9
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.46 E-value=39 Score=25.30 Aligned_cols=78 Identities=9% Similarity=-0.020 Sum_probs=41.5
Q ss_pred eeeecCchhHHHHhhCCCchhhHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeee--CCHHHH
Q 031384 44 LLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYS--DDMEEK 121 (160)
Q Consensus 44 ~l~s~~~~p~~~~a~~~g~~~~~~~lePia~~f~sl~LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~t--ad~Evk 121 (160)
.+.+-+|-|++....+-. ..-=.+.++ |+.-+.++ .+-+++.+|.+|.-|+=-.. ......
T Consensus 7 h~v~~SpWP~~~s~~~~~------~~~g~~~~~----------~~~~~~~~-~~gl~~~~~~~~~W~rdvi~E~~~~G~h 69 (259)
T d1v54c_ 7 HMVNPSPWPLTGALSALL------MTSGLTMWF----------HFNSMTLL-MIGLTTNMLTMYQWWRDVIRESTFQGHH 69 (259)
T ss_dssp CCCCCCSHHHHHHHHHHH------HHHHHHHHH----------HHSCCHHH-HHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CcCCCChhHHHHHHHHHH------HHHHHHHHH----------HhccHHHH-HHHHHHHHHHHHHHHHHHhhccccCCCc
Confidence 355678999986554422 111123343 33333444 45566667777776652111 111122
Q ss_pred HHhHhhchhhHHHHHHH
Q 031384 122 AKAKDLHPKLLGGMFFF 138 (160)
Q Consensus 122 ~K~~~~H~qlgs~lL~f 138 (160)
.+..++..|+|-|+|.+
T Consensus 70 t~~v~~~~~~G~~lFi~ 86 (259)
T d1v54c_ 70 TPAVQKGLRYGMILFII 86 (259)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHhhhhHHHHHHHHH
Confidence 56677778888887754
No 10
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=10.53 E-value=48 Score=20.92 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=13.4
Q ss_pred HHHhhcCCCCchh--hhhhhhHHHHH
Q 031384 73 VELVKSWNLPDWL--VHWGHPGNMAV 96 (160)
Q Consensus 73 a~~f~sl~LPE~I--vhwGHPlmM~w 96 (160)
-+.|..+++|+-+ ..|||=+=+|.
T Consensus 29 p~~fgg~g~~~lLat~s~GHilG~G~ 54 (58)
T d1jb0k_ 29 PALFEGFGLPELLATTSFGHLLAAGV 54 (58)
T ss_dssp -------CCTTGGGHHHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHhhHHHHHhhhh
Confidence 4889999999999 88999665543
Done!