BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031385
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 209 bits (532), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 116/160 (72%), Gaps = 1/160 (0%)
Query: 1 MSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXX 60
MSVTLHT++GDIK E+ C+ PKT ENFLALCAS YY+G IFHRNIKGFM+Q
Sbjct: 7 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTG 66
Query: 61 XXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGR 120
SIWGKKF DE E LKHN RG++SMAN+GPNTNGSQFFI+Y KQPHL+ YTVFG+
Sbjct: 67 RGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGK 126
Query: 121 VIHGFEVLDLMEKAQTGSGD-RPLAEIRINRVTIHANPLA 159
VI G E LD +EK RPL ++ I +TIHANP A
Sbjct: 127 VIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFA 166
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 209 bits (532), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 116/160 (72%), Gaps = 1/160 (0%)
Query: 1 MSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXX 60
MSVTLHT++GDIK E+ C+ PKT ENFLALCAS YY+G IFHRNIKGFM+Q
Sbjct: 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTG 60
Query: 61 XXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGR 120
SIWGKKF DE E LKHN RG++SMAN+GPNTNGSQFFI+Y KQPHL+ YTVFG+
Sbjct: 61 RGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGK 120
Query: 121 VIHGFEVLDLMEKAQTGSGD-RPLAEIRINRVTIHANPLA 159
VI G E LD +EK RPL ++ I +TIHANP A
Sbjct: 121 VIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFA 160
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 107/161 (66%), Gaps = 4/161 (2%)
Query: 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
V + TN GD+K E+ C + PK +NFLAL ASGYY TIFH+NIKGF+IQ
Sbjct: 19 VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKG 78
Query: 63 XXSIWGKKFNDEIRESLKHNARGILSMANSG----PNTNGSQFFISYAKQPHLNGLYTVF 118
SI+G+ F+DEI LK++ RGILSMA+ G PNTNGSQFFI+Y+ P LNG Y +F
Sbjct: 79 GESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIF 138
Query: 119 GRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANPLA 159
G++I GFE L+ +E + +P+ EI I + IH+NP+A
Sbjct: 139 GKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIHSNPIA 179
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 167 bits (422), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
V LHTN GD+ E+ CD PKT ENF+ LC YYDGTIFHR+I+ F+IQ
Sbjct: 22 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 81
Query: 63 XXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI 122
S WGK F DE R +L H RGILSMANSGPN+N SQFFI++ +L+ +T+FGRV+
Sbjct: 82 GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 141
Query: 123 HGFEVLDLMEKAQTG-SGDRPLAEIRINRVTIHANP 157
GF+VL ME ++ DRP EIRI+ T+ +P
Sbjct: 142 GGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDP 177
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 94/154 (61%)
Query: 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
+T++TNLGD + E+ PKT NF LC G+YD TIFHR I F+IQ
Sbjct: 41 ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 100
Query: 63 XXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI 122
SI+G+ F DEI + LKH GILSM+N+GPNTN SQFFI+ A PHL+G +T+F RV
Sbjct: 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 160
Query: 123 HGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHAN 156
++ + QT + ++P+ +++I R + N
Sbjct: 161 KNMTCIENIASVQTTATNKPIFDLKILRTSTAVN 194
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 130 bits (326), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 91/147 (61%)
Query: 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXX 61
+V L T++G I E+ PKT +NF L GYY+GT FHR IK FMIQ
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 62 XXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRV 121
SI+GK+F DE+ LK GIL+MAN+GP+TNGSQFF++ A L+G +T+FGRV
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 122 IHGFEVLDLMEKAQTGSGDRPLAEIRI 148
G +++ + +T S DRP+ +++I
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 130 bits (326), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 91/147 (61%)
Query: 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXX 61
+V L T++G I E+ PKT +NF L GYY+GT FHR IK FMIQ
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 62 XXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRV 121
SI+GK+F DE+ LK GIL+MAN+GP+TNGSQFF++ A L+G +T+FGRV
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 122 IHGFEVLDLMEKAQTGSGDRPLAEIRI 148
G +++ + +T S DRP+ +++I
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 130 bits (326), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 91/147 (61%)
Query: 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXX 61
+V L T++G I E+ PKT +NF L GYY+GT FHR IK FMIQ
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 62 XXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRV 121
SI+GK+F DE+ LK GIL+MAN+GP+TNGSQFF++ A L+G +T+FGRV
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 122 IHGFEVLDLMEKAQTGSGDRPLAEIRI 148
G +++ + +T S DRP+ +++I
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 129 bits (325), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXX 61
S +HT++GDI ++ E PKT ENF +GYY+G FHR IKGFMIQ
Sbjct: 23 SAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGM 82
Query: 62 XXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRV 121
SIWG +F DE +L+H+ LSMAN+G NTNGSQFFI+ P L+ +TVFGRV
Sbjct: 83 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRV 142
Query: 122 IHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 153
G EV+ + + D+P ++ I +T+
Sbjct: 143 TKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 175
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 89/152 (58%)
Query: 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXX 61
S ++T +GDI + E KT +NF +GYY+ IFHR IK FM+Q
Sbjct: 7 SAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGT 66
Query: 62 XXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRV 121
SIWG +F DE + L H+ ++SMAN GPNTNGSQFFI+ P L+ +TVFG+V
Sbjct: 67 GGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKV 126
Query: 122 IHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 153
G +++ +EK +T D+PL +I+I + I
Sbjct: 127 TQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI 158
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 93/161 (57%), Gaps = 14/161 (8%)
Query: 1 MSVTLHTNL-GDIKCEIACDEVPKTAENFLALCA--------SG---YYDGTIFHRNIKG 48
+ VT+ NL G I E+ D P+T NFL LC SG +Y G+ FHR IK
Sbjct: 11 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN 70
Query: 49 FMIQXXX-XXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAK 107
FMIQ SI+G F+DE +KH+ ++SMAN GPNTNGSQFFI+
Sbjct: 71 FMIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTP 129
Query: 108 QPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 148
PHLN ++ VFG+V+ G EV+ +E +T S +RPLA++ I
Sbjct: 130 APHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 170
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 88/169 (52%), Gaps = 20/169 (11%)
Query: 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALC----------ASG-----YYDGTIFHRNI 46
+ TLHTN GDIK + + PKT NF+ L ASG +YDG +FHR I
Sbjct: 25 TATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVI 84
Query: 47 KGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYA 106
+GFMIQ KF DE L+ + +L+MAN+GP TNGSQFFI+
Sbjct: 85 QGFMIQGGDPTGTGRGGPGY---KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVG 141
Query: 107 KQPHLNGLYTVFGRVI--HGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 153
K PHLN +T+FG VI V++ + K T DRP + I +TI
Sbjct: 142 KTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 190
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
V L T GDI E+ E PK NF+ LC YYD TIFHR + GF++Q
Sbjct: 27 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSG 86
Query: 63 XXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI 122
SI+G F DE L+ N RG+++MAN+G + NGSQFF + + LN +T+FG+V
Sbjct: 87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT 146
Query: 123 HGFEVLDLMEKAQTGSGD--RPLAEIRINRVTIHANPL 158
G V +++ ++ D RP +I + NP
Sbjct: 147 -GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLFNPF 183
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXX-XXXXXXXXX 64
LG IK ++ D VPKTA NF ALC G+ Y G+ FHR I FM+Q
Sbjct: 15 LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G KF DE LKHN G+LSMAN+GPNTNGSQFFI+ L+G + VFG VI G
Sbjct: 75 SIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDG 133
Query: 125 FEVLDLMEKAQTGSGDRPLAEIRINRVTI 153
V+ +E +GSG +P + I I + +
Sbjct: 134 MNVVKAIEAEGSGSG-KPRSRIEIAKCGV 161
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEG 135
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 136 MNIVEAMER 144
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 13/152 (8%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCASGY-----------YDGTIFHRNIKGFMIQXXX-X 56
+G I ++ D PKT +NFL LC+ Y G+ FHR +K FMIQ
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 57 XXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYT 116
SI+G F DE LKH+ +LSMAN G +TNGSQFFI+ PHL+G++
Sbjct: 93 EGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 151
Query: 117 VFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 148
VFG VI GFEV++ +E +T + RP A++R+
Sbjct: 152 VFGLVISGFEVIEQIENLKTDAASRPYADVRV 183
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEG 135
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 136 MNIVEAMER 144
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 25 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 84
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 85 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 143
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 144 MNIVEAMER 152
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 87/145 (60%), Gaps = 8/145 (5%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS----GYYDGTIFHRNIKGFMIQXXXXXX-XXXXX 63
LG I + + P T ENF LC GY D +IFHR I+ FMIQ
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKD-SIFHRVIQNFMIQGGDFTNFDGTGG 83
Query: 64 XSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIH 123
SI+G+KF DE ++KH G LSMAN+GPNTNGSQFFI+ A P L+G + VFG+V+
Sbjct: 84 KSIYGEKFADE-NLNVKHFV-GALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLD 141
Query: 124 GFEVLDLMEKAQTGSGDRPLAEIRI 148
G +V+ +EK +T S DRP+ ++I
Sbjct: 142 GMDVVLRIEKTKTNSHDRPVKPVKI 166
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 136 MNIVEAMER 144
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 136 MNIVEAMER 144
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 136 MNIVEAMER 144
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 135 MNIVEAMER 143
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXX-XXXXXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 21 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 80
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 81 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEG 139
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 140 MNIVEAMER 148
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 36 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 96 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 154
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 155 MNIVEAMER 163
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 87/145 (60%), Gaps = 8/145 (5%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS----GYYDGTIFHRNIKGFMIQXXXXXX-XXXXX 63
LG I + + P T ENF LC GY D +IFHR I+ FMIQ
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKD-SIFHRVIQNFMIQGGDFTNFDGTGG 83
Query: 64 XSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIH 123
SI+G+KF DE ++KH G LSMAN+GPNTNGSQFFI+ A P L+G + VFG+V+
Sbjct: 84 KSIYGEKFADE-NLNVKHFV-GALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLD 141
Query: 124 GFEVLDLMEKAQTGSGDRPLAEIRI 148
G +V+ +EK +T S DRP+ ++I
Sbjct: 142 GMDVVLRIEKTKTNSHDRPVKPVKI 166
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 136 MNIVEAMER 144
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXX-XXXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 136 MNIVEAMER 144
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 6/145 (4%)
Query: 9 LGDIKCEIACDEVPKTAENF--LALCASGY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
+G + + ++VPKT ENF LA +G+ Y G+IFHR I+ FMIQ
Sbjct: 19 VGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGK 78
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G +F+DE +KH G +SMAN+GPN+NGSQFF++ A P L+G + VFG+V+ G
Sbjct: 79 SIYGTRFDDE-NLKIKHFV-GAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEG 136
Query: 125 FEVLDLMEKAQTGSGDRPLAEIRIN 149
+V+ +E +TG D+P ++IN
Sbjct: 137 MDVVKKVENTKTGLNDKPKKAVKIN 161
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GIL+MAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 136 MNIVEAMER 144
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FH+ I GFM Q
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 136 MNIVEAMER 144
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 78/129 (60%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG V G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEG 134
Query: 125 FEVLDLMEK 133
+++ ME+
Sbjct: 135 MNIVEAMER 143
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 81/143 (56%), Gaps = 13/143 (9%)
Query: 10 GDIKCEIACDEVPKTAENFLALCA-------SG---YYDGTIFHRNIKGFMIQXXX-XXX 58
G I E+ D VPKTAENF ALC SG +Y ++FHR I FMIQ
Sbjct: 22 GRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDFTRG 81
Query: 59 XXXXXXSIWGKKFNDEI--RESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYT 116
SI+G F DE ++ +H G LSMAN+GPNTNGSQFFI A P L+G +
Sbjct: 82 NGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHV 141
Query: 117 VFGRVIHGFEVLDLMEKAQTGSG 139
VFGRVI G +V+ +E+ + SG
Sbjct: 142 VFGRVIDGLDVVKKVERLGSSSG 164
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GFM Q
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGK 75
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILSMAN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 125 FEVLDLMEK 133
+++ M++
Sbjct: 135 MNIVEAMKR 143
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D VPKTAENF ALC G+ Y G+ FHR I FM Q
Sbjct: 18 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 77
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G +F DE +LKH G+LSMAN+GPNTNGSQFFI K L+G + VFG VI G
Sbjct: 78 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 136
Query: 125 FEVLDLMEKAQTGSG 139
+V+ +E + SG
Sbjct: 137 MDVVKKIESFGSKSG 151
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D VPKTAENF ALC G+ Y G+ FHR I FM Q
Sbjct: 16 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 75
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G +F DE +LKH G+LSMAN+GPNTNGSQFFI K L+G + VFG VI G
Sbjct: 76 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 134
Query: 125 FEVLDLMEKAQTGSG 139
+V+ +E + SG
Sbjct: 135 MDVVKKIESFGSKSG 149
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D VPKTAENF ALC G+ Y G+ FHR I FM Q
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G +F DE +LKH G+LSMAN+GPNTNGSQFFI K L+G + VFG VI G
Sbjct: 77 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 135
Query: 125 FEVLDLMEKAQTGSG 139
+V+ +E + SG
Sbjct: 136 MDVVKKIESFGSKSG 150
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 82/146 (56%), Gaps = 14/146 (9%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCASG-----------YYDGTIFHRNIKGFMIQXXX-X 56
+G I E+ D VPKTAENF ALC ++ G FHR IK FMIQ
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 57 XXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYT 116
SI+G+KF DE KH+ G+LSMAN+G NTNGSQFFI+ PHL+G +
Sbjct: 89 NQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHV 147
Query: 117 VFGRVIHGFEVLDLMEKAQTGSGDRP 142
VFG+VI G V ++E + G++P
Sbjct: 148 VFGQVIKGMGVAKILENVEV-KGEKP 172
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D VPKTAENF ALC G+ Y G+ FHR I FM Q
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G +F DE +LKH G+LSMAN+GPNTNGSQFFI K L+G + VFG VI G
Sbjct: 77 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 135
Query: 125 FEVLDLMEKAQTGSG 139
+V+ +E + SG
Sbjct: 136 MDVVKKIESFGSKSG 150
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 83/151 (54%), Gaps = 13/151 (8%)
Query: 10 GDIKCEIACDEVPKTAENFLALCASG-----------YYDGTIFHRNIKGFMIQXXX-XX 57
G + E+ D PKT ENF LC +Y +FHR +K FM+Q
Sbjct: 41 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 100
Query: 58 XXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTV 117
SI+G F DE ++KHNA +LSMAN G +TNGSQFFI+ PHL+G + V
Sbjct: 101 GNGRGGESIYGGFFEDE-SFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 159
Query: 118 FGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 148
FG+VI G EV+ +E +T + +P AE+RI
Sbjct: 160 FGQVISGQEVVREIENQKTDAASKPFAEVRI 190
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 8 NLGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXX-XXXXXXXX 63
++G I + + VPKT ENF+AL GY Y G+IFHR IK FMIQ
Sbjct: 20 DVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGG 79
Query: 64 XSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIH 123
SI+G+ F DE LKH G +SMAN+GP+TNGSQFFI+ K L+G + VFG+V+
Sbjct: 80 MSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLD 138
Query: 124 GFEVLDLMEKAQTGSGDRPLAEIRI 148
G V+ +E T DRPL + I
Sbjct: 139 GMTVVHSIELQATDGHDRPLTDCTI 163
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 85/151 (56%), Gaps = 10/151 (6%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCASGY--------YDGTIFHRNIKGFMIQXXX-XXXX 59
+G +K E+ D VPKTAENF C + Y G+ FHR IK FMIQ
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 60 XXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFG 119
SI+ F DE L+H+A G+LSMANSGP+TNG QFFI+ +K L+G + VFG
Sbjct: 84 GTGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 120 RVIHGFEVLDLMEKAQTGSGDRPLAEIRINR 150
++I G V+ +E TG ++P + I++
Sbjct: 143 KIIDGLLVMRKIENVPTGPNNKPKLPVVISQ 173
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 82/151 (54%), Gaps = 13/151 (8%)
Query: 10 GDIKCEIACDEVPKTAENFLALCASG-----------YYDGTIFHRNIKGFMIQXXX-XX 57
G + E+ D PKT ENF LC +Y +FHR +K FM+Q
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83
Query: 58 XXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTV 117
SI+G F DE ++KHN +LSMAN G +TNGSQFFI+ PHL+G + V
Sbjct: 84 GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 142
Query: 118 FGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 148
FG+VI G EV+ +E +T + +P AE+RI
Sbjct: 143 FGQVISGQEVVREIENQKTDAASKPFAEVRI 173
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 82/151 (54%), Gaps = 13/151 (8%)
Query: 10 GDIKCEIACDEVPKTAENFLALCASG-----------YYDGTIFHRNIKGFMIQXXX-XX 57
G + E+ D PKT ENF LC +Y +FHR +K FM+Q
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSE 83
Query: 58 XXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTV 117
SI+G F DE ++KHN +LSMAN G +TNGSQFFI+ PHL+G + V
Sbjct: 84 GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 142
Query: 118 FGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 148
FG+VI G EV+ +E +T + +P AE+RI
Sbjct: 143 FGQVISGQEVVREIENQKTDAASKPFAEVRI 173
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 79/137 (57%), Gaps = 7/137 (5%)
Query: 8 NLGDIKCEIACDEVPKTAENFLALCAS----GYYDGTIFHRNIKGFMIQXXX-XXXXXXX 62
+ G I E+ D VP+TAENF ALC GY++ FHR I FM Q
Sbjct: 23 DAGRIVMELRSDIVPRTAENFRALCTGERGFGYHN-CCFHRVIPQFMCQGGDFVKGDGTG 81
Query: 63 XXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI 122
SI+G+KF+DE L+H G+LSMANSGPNTNGSQFFI K L+G + VFGRV+
Sbjct: 82 GKSIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVV 140
Query: 123 HGFEVLDLMEKAQTGSG 139
G V+ ME + SG
Sbjct: 141 DGQNVVKKMESVGSKSG 157
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 85/155 (54%), Gaps = 13/155 (8%)
Query: 6 HTNLGDIKCEIACDEVPKTAENFLALCA-------SGY---YDGTIFHRNIKGFMIQXXX 55
T G I E+ D+VP TAENF ALC SG Y G+ FHR I FMIQ
Sbjct: 30 QTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGD 89
Query: 56 -XXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGL 114
SI+G KF DE H+A +LSMAN+GPNTNGSQFFI+ P L+G
Sbjct: 90 FTRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGK 148
Query: 115 YTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRIN 149
+ VFG+V+ G EV+ +EK + +G +P + I
Sbjct: 149 HVVFGKVLEGMEVVKSIEKCGSQNG-KPTKSVCIT 182
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 8 NLGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXX-XXXXXXXX 63
++G I + VPKT ENF+AL GY Y G+ FHR IK FMIQ
Sbjct: 28 DVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGG 87
Query: 64 XSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIH 123
SI+G+ F DE LKH G +SMAN+GP+TNGSQFFI+ K L+G + VFG+VI
Sbjct: 88 VSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVID 146
Query: 124 GFEVLDLMEKAQTGSGDRPLAEIRI 148
G V+ +E T DRPL I
Sbjct: 147 GMTVVHSIELQATDGHDRPLTNCSI 171
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 84/164 (51%), Gaps = 12/164 (7%)
Query: 7 TNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQ--------XXXXXX 58
T G + E+ D P+ ++FL LCA Y+D TIFHR I+ FMIQ
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 59 XXXXXXSI----WGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGL 114
SI G F DE L H G+LSMAN G ++N S+FFI++ HLN
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 115 YTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANPL 158
+T+FGRV+ G +VL EK +T D+PL ++ + + NP
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIVFKNPF 176
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 83/148 (56%), Gaps = 12/148 (8%)
Query: 1 MSVTLHTN-LGDIKCEIACDEVPKTAENFLALCASGY--------YDGTIFHRNIKGFMI 51
M + L N LG K E+ + VPKT+ENF C Y Y TIFHR IK FMI
Sbjct: 64 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMI 123
Query: 52 QXXXXXX-XXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPH 110
Q SI+G+KF+DE +KH+ G+LSMANSGPNTNG QFFI+ K
Sbjct: 124 QGGDFINHNGSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEW 182
Query: 111 LNGLYTVFGRVIHGFEVLDLMEKAQTGS 138
L+G VFGR+I +L L++K + S
Sbjct: 183 LDGKNVVFGRIIDNDSLL-LLKKIENVS 209
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCASGY---YDGTIFHRNIKGFMIQXXX-XXXXXXXXX 64
+G I + VPKTA NF+ L Y G+ FHR I FMIQ
Sbjct: 20 IGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGR 79
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH G LSMAN+G +TNGSQFFI+ K P L+G + VFG+++ G
Sbjct: 80 SIYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEG 138
Query: 125 FEVLDLMEKAQTGSGDRPLAEIRI 148
+V+ +E+ + GDRP ++ I
Sbjct: 139 MDVVRKIEQTEKLPGDRPKQDVII 162
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Query: 6 HTNLGDIKCEIACDEVPKTAENFLALCASG---------YYDGTIFHRNIKGFMIQXXXX 56
++N G I E+ D P+T ENF ALC +Y +IFHR I FM Q
Sbjct: 14 NSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDI 73
Query: 57 XXXXXXX-XSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLY 115
SI+G+ F DE ++KH+ G+LSMAN+GPNTN SQFFI+ P L+G +
Sbjct: 74 TNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKH 132
Query: 116 TVFGRVIHGFEVLDLMEKAQTGSG 139
VFG+VI G V+ MEK SG
Sbjct: 133 VVFGKVIEGMNVVREMEKEGAKSG 156
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 86/151 (56%), Gaps = 15/151 (9%)
Query: 10 GDIKCEIACDEVPKTAENFLALCA-------SG---YYDGTIFHRNIKGFMIQXXX-XXX 58
G I E+ D VPKTA NF ALC SG ++ G+ FHR I FMIQ
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 59 XXXXXXSIWGKKFNDE-IRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTV 117
SI+G+KF DE +E KH G+LSMAN+GPNTNGSQFF+ K L+G + V
Sbjct: 78 NGTGGESIYGEKFPDENFKE--KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVV 135
Query: 118 FGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 148
FGRV+ G +V+ +E + SG +P+ + I
Sbjct: 136 FGRVVEGLDVVKAVESNGSQSG-KPVKDCMI 165
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 8 NLGDIKCEIACDEVPKTAENFLALCAS----GYYDGTIFHRNIKGFMIQXXX-XXXXXXX 62
++G + + VPKT +NF+AL GY D + FHR IK FMIQ
Sbjct: 25 DIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKD-SKFHRVIKDFMIQGGDFTRGDGTG 83
Query: 63 XXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI 122
SI+G++F DE LKH G +SMAN+G +TNGSQFFI+ K L+G + VFG+V+
Sbjct: 84 GKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVL 142
Query: 123 HGFEVLDLMEKAQTGSGDRPLAEIRI 148
G EV+ +E +T D+PL ++ I
Sbjct: 143 EGMEVVRKVETTKTDGRDKPLKDVTI 168
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 8 NLGDIKCEIACDEVPKTAENFLALCAS----GYYDGTIFHRNIKGFMIQXXX-XXXXXXX 62
++G + + VPKT +NF+AL GY D + FHR IK FMIQ
Sbjct: 25 DIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKD-SKFHRVIKDFMIQGGDFTRGDGTG 83
Query: 63 XXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI 122
SI+G++F DE LKH G +SMAN+G +TNGSQFFI+ K L+G + VFG+V+
Sbjct: 84 GKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVL 142
Query: 123 HGFEVLDLMEKAQTGSGDRPLAEIRI 148
G EV+ +E +T D+PL ++ I
Sbjct: 143 EGMEVVRKVETTKTDGRDKPLKDVTI 168
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG + E+ D+VPKTAENF AL G+ Y G+ FHR I GF Q
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGK 75
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE LKH GILS AN+GPNTNGSQFFI AK L+G + VFG+V G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 125 FEVLDLMEK 133
+++ E+
Sbjct: 135 XNIVEAXER 143
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 80/132 (60%), Gaps = 5/132 (3%)
Query: 21 VPKTAENFLALCA--SGY-YDGTIFHRNIKGFMIQXXX-XXXXXXXXXSIWGKKFNDEIR 76
VPKT +NF+AL G+ Y + FHR IK FMIQ SI+G++F DE
Sbjct: 41 VPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-N 99
Query: 77 ESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQT 136
LKH G +SMAN+G +TNGSQFFI+ K L+G + VFG+V+ G EV+ +E +T
Sbjct: 100 FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKT 159
Query: 137 GSGDRPLAEIRI 148
S D+PL ++ I
Sbjct: 160 DSRDKPLKDVII 171
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 80/132 (60%), Gaps = 5/132 (3%)
Query: 21 VPKTAENFLALCA--SGY-YDGTIFHRNIKGFMIQXXX-XXXXXXXXXSIWGKKFNDEIR 76
VPKT +NF+AL G+ Y + FHR IK FMIQ SI+G++F DE
Sbjct: 31 VPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-N 89
Query: 77 ESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQT 136
LKH G +SMAN+G +TNGSQFFI+ K L+G + VFG+V+ G EV+ +E +T
Sbjct: 90 FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKT 149
Query: 137 GSGDRPLAEIRI 148
S D+PL ++ I
Sbjct: 150 DSRDKPLKDVII 161
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 5/135 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXX-XXXXXXXXX 64
+G + ++ D VPKTAENF ALC G+ Y G+ FHR I FM+Q
Sbjct: 15 IGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G KF DE + H+ G+LSMAN+GPNTNGSQFFI+ P L+G + VFG V+ G
Sbjct: 75 SIYGGKFPDENFKK-HHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDG 133
Query: 125 FEVLDLMEKAQTGSG 139
++++ +E + SG
Sbjct: 134 YDIVKKVESLGSPSG 148
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 10 GDIKCEIACDEVPKTAENFLALCA--SGY-YDGTIFHRNIKGFMIQXXX-XXXXXXXXXS 65
G I+ + D VP TAENF LC G+ + G+ FHR I FM Q S
Sbjct: 26 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 85
Query: 66 IWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGF 125
I+GKKF+DE LKH G+LSMANSGPNTNGSQFF++ K L+G + VFG V G
Sbjct: 86 IYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 144
Query: 126 EVLDLMEKAQTGSGDRPLAEIRI 148
+VL +E AQ +P ++ I
Sbjct: 145 DVLRQIE-AQGSKDGKPKQKVII 166
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 10 GDIKCEIACDEVPKTAENFLALCA--SGY-YDGTIFHRNIKGFMIQXXX-XXXXXXXXXS 65
G I+ + D VP TAENF LC G+ + G+ FHR I FM Q S
Sbjct: 18 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 77
Query: 66 IWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGF 125
I+GKKF+DE LKH G+LSMANSGPNTNGSQFF++ K L+G + VFG V G
Sbjct: 78 IYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 136
Query: 126 EVLDLMEKAQTGSGDRPLAEIRI 148
+VL +E AQ +P ++ I
Sbjct: 137 DVLRQIE-AQGSKDGKPKQKVII 158
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 78/144 (54%), Gaps = 11/144 (7%)
Query: 6 HTNLGDIKCEIACDEVPKTAENFLALCASG---------YYDGTIFHRNIKGFMIQXXX- 55
++N G I E+ D P+T ENF ALC +Y +IFHR I FM Q
Sbjct: 14 NSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDI 73
Query: 56 XXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLY 115
SI+G+ F DE ++KH+ G+LSMAN+GPNTN SQF I+ P L+G +
Sbjct: 74 TNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKH 132
Query: 116 TVFGRVIHGFEVLDLMEKAQTGSG 139
VFG+VI G V+ MEK SG
Sbjct: 133 VVFGKVIEGMNVVREMEKEGAKSG 156
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 8 NLGDIKCEIACDEVPKTAENFLALCASGY---YDGTIFHRNIKGFMIQXXXXXX-XXXXX 63
+LG I ++ D VPKTA+NF LC Y G+ FHR I GFM+Q
Sbjct: 40 SLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGG 99
Query: 64 XSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIH 123
SI+G+KF DE E LKH GILSMAN G +TNGSQFFI+ K L+ + VFG V+
Sbjct: 100 RSIYGEKFPDENFE-LKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVE 158
Query: 124 GFEVLDLMEKAQTGSG 139
G +V+ + K + SG
Sbjct: 159 GMDVVHKIAKYGSESG 174
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 86/174 (49%), Gaps = 19/174 (10%)
Query: 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQ--XXXXXXXX 60
V LHT+LGD+ E+ E P NF+ LC GYY TIFHR +K F++Q
Sbjct: 24 VVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRG 83
Query: 61 XXXXSIWGKKFNDEIRESLKHNARGILSMANSGPN--------------TNGSQFFISYA 106
+ GK F+ E LK RG++ +AN G + TNG+QFFI+ A
Sbjct: 84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLA 143
Query: 107 KQPHLNGLYTVFGRVIHGFEVLDLME--KAQTGSGDRPLAEIRINRVTIHANPL 158
+ LN YT+FG+V G + +LM+ + G DRP+ I V + NP
Sbjct: 144 RADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPF 196
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 79/143 (55%), Gaps = 9/143 (6%)
Query: 4 TLHTNLGDIKCEIACDEVPKTAENFLALC----ASGYYDGTIFHRNIKGFMIQXXX-XXX 58
T T +G I + +VPKTA+NF LC GY + T FHR I FMIQ
Sbjct: 16 TAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYREST-FHRIIPNFMIQGGDFTRG 74
Query: 59 XXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVF 118
SI+G KF DE S KH+ +GILSMAN+GPNTNGSQFFI+ A L+G + VF
Sbjct: 75 NGTGGRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVF 133
Query: 119 GRVI--HGFEVLDLMEKAQTGSG 139
G V + V+ +E + SG
Sbjct: 134 GEVADEKSYSVVKEIEALGSSSG 156
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Query: 10 GDIKCEIACDEVPKTAENFLALCA--SGY-YDGTIFHRNIKGFMIQXXX-XXXXXXXXXS 65
G I+ + D VP TAENF LC G+ + G+ FHR I F Q S
Sbjct: 27 GRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKS 86
Query: 66 IWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGF 125
I+GKKF+DE LKH G+LS ANSGPNTNGSQFF++ K L+G + VFG V G
Sbjct: 87 IYGKKFDDE-NFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 145
Query: 126 EVLDLMEKAQTGSGDRPLAEIRI 148
+VL +E AQ +P ++ I
Sbjct: 146 DVLRQIE-AQGSKDGKPKQKVII 167
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 10 GDIKCEIACDEVPKTAENFLALCAS----GYYDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
G I ++ + VPKTA+NF L GY D +IFHR I FM+Q
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKD-SIFHRVIPQFMLQGGDFTRHNGTGGK 75
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G+KF DE +KH G+LSMAN+G NTNGSQFFI+ L+G + VFG VI G
Sbjct: 76 SIYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEG 134
Query: 125 FEVLDLMEKAQTGSGDRPLAEIRI 148
+++ +E + SG + A I+I
Sbjct: 135 LDIVRKVEGKGSASG-KTNATIKI 157
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Query: 10 GDIKCEIACDEVPKTAENF--LALCASGY-YDGTIFHRNIKGFMIQXXX-XXXXXXXXXS 65
G I ++ + VPKTA+NF LA G+ Y +IFHR I FM+Q S
Sbjct: 18 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 66 IWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGF 125
I+G+KF DE +KH G+LSMAN+G NTNGSQFFI+ L+G + VFG VI G
Sbjct: 78 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 136
Query: 126 EVLDLMEKAQTGSGDRPLAEIRI 148
+++ +E + SG + A I+I
Sbjct: 137 DIVRKVEGKGSASG-KTNATIKI 158
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
VT HTN GDI + D+ P+T +NFL C G+Y+ TIFHR I GFMIQ
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 63 XXSIWGKKFNDEIRESLKHNARGILSMANS-GPNTNGSQFFISYAKQPHLNGL------- 114
+ + +E LK N RG L+MA + P++ +QFFI+ LN
Sbjct: 62 KAT--KEPIKNEANNGLK-NTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 115 -YTVFGRVIHGFEVLDLMEKAQTG-SG---DRPLAEIRINRVTI 153
Y VF V+ G +V+D ++ TG SG D P ++ I VT+
Sbjct: 119 GYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Query: 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
VT HTN GDI + D+ P+T +NFL C G+Y+ TIFHR I GFMIQ
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 63 XXSIWGKKFNDEIRESLKHNARGILSMANS-GPNTNGSQFFISYAKQPHLNGL------- 114
+ + +E LK N RG L+MA + P++ +QFFI+ LN
Sbjct: 62 KAT--KEPIKNEANNGLK-NTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 115 -YTVFGRVIHGFEVLDLMEKAQTG-SG---DRPLAEIRINRVTI 153
Y VF V+ G + +D ++ TG SG D P ++ I VT+
Sbjct: 119 GYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
V LHTN G IK E+ + PKT ENFL G+YDGTIFHR I GFMIQ
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQ 65
Query: 63 XXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGL-------- 114
+ +E LK++ I + P++ +QFFI+ LN
Sbjct: 66 KPT--DAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWG 123
Query: 115 YTVFGRVIHGFEVLDLMEKAQTGSG----DRPLAEIRINRVTI 153
Y VFG+V+ G +++D ++ +TGS D P ++ I + +
Sbjct: 124 YAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVV 166
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 9 LGDIKCEIACDEVPKTAENFLALCA--SGY-YDGTIFHRNIKGFMIQXXXXXX-XXXXXX 64
LG I E+ + VP+TAENF ALC G+ + +IFHR I F+ Q
Sbjct: 20 LGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQ 79
Query: 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG 124
SI+G KF DE +KH G+LSMAN G NTN SQF I+ K HL+ + VFG V G
Sbjct: 80 SIYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDG 138
Query: 125 FEVLDLME 132
+ + +E
Sbjct: 139 MDTVKKIE 146
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXX 61
S+ L TN G I ++ D+ P+TA NF G+YDGTIFHR I GFMIQ
Sbjct: 1 SIKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGGFEPGMK 60
Query: 62 XXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGL------- 114
+ +E L + I P++ +QFFI+ L+
Sbjct: 61 QKST--RAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHGW 118
Query: 115 -YTVFGRVIHGFEVLDLMEKAQTGS----GDRPLAEIRINRVTI 153
Y VFG V+ G +V+D ++ TGS GD P+ ++ I + I
Sbjct: 119 GYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVIIEKAEI 162
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
V L T+ G+I+ E+ + P + +NF+ SG+Y+ T FHR I GFMIQ
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ------GGGF 60
Query: 63 XXSIWGKKFNDEIRESLKH---NARGILSMANSG-PNTNGSQFFISYAKQPHLNG----- 113
+ KK N I+ + N RG ++MA + ++ SQFFI+ A L+
Sbjct: 61 TEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 114 LYTVFGRVIHGFEVLDLMEKAQT 136
Y VFG+V+ G +V D + + T
Sbjct: 121 GYAVFGKVVKGMDVADKISQVPT 143
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXX 62
V L T+ G+I+ E+ + P + +NF+ SG+Y+ T FHR I GFMIQ
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ------GGGF 60
Query: 63 XXSIWGKKFNDEIRESLKH---NARGILSMANSG-PNTNGSQFFISYAKQPHLNG----- 113
+ KK N I+ + N RG ++MA + ++ SQFFI+ A L+
Sbjct: 61 TEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 114 LYTVFGRVIHGFEVLDLMEKAQT 136
Y VFG+V+ G +V D + + T
Sbjct: 121 GYAVFGKVVKGMDVADKISQVPT 143
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38
(Atcyp38)
Length = 369
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 6 HTNLGDIKCEIACD--EVPKTAENFLALCASGYYDGTIFHRNIKGFMIQ 52
+ N+ D I D P TA NF+ L +YDG R+ GF++Q
Sbjct: 182 NPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQ 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,652,083
Number of Sequences: 62578
Number of extensions: 167939
Number of successful extensions: 463
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 75
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)