Query 031385
Match_columns 160
No_of_seqs 120 out of 1274
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 13:21:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01923 cyclophilin_RING cyclo 100.0 3.3E-53 7.1E-58 306.9 20.1 158 3-160 2-159 (159)
2 cd01928 Cyclophilin_PPIL3_like 100.0 3.3E-52 7.1E-57 299.8 18.8 153 1-153 1-153 (153)
3 cd01921 cyclophilin_RRM cyclop 100.0 1.2E-51 2.6E-56 300.7 19.0 156 4-159 1-164 (166)
4 KOG0884 Similar to cyclophilin 100.0 7.8E-51 1.7E-55 274.2 13.6 159 1-159 1-160 (161)
5 cd01925 cyclophilin_CeCYP16-li 100.0 9.8E-50 2.1E-54 291.8 19.7 158 2-159 7-165 (171)
6 cd01927 cyclophilin_WD40 cyclo 100.0 9.5E-50 2.1E-54 285.7 17.5 148 4-151 1-148 (148)
7 KOG0881 Cyclophilin type pepti 100.0 1.2E-50 2.6E-55 274.6 9.3 153 2-154 11-163 (164)
8 KOG0546 HSP90 co-chaperone CPR 100.0 5.6E-50 1.2E-54 313.2 11.7 148 8-156 21-180 (372)
9 cd01922 cyclophilin_SpCYP2_lik 100.0 1.2E-48 2.6E-53 279.3 17.1 146 4-150 1-146 (146)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 4.1E-48 8.9E-53 276.8 16.7 149 2-154 1-157 (158)
11 KOG0883 Cyclophilin type, U bo 100.0 1.9E-48 4E-53 306.0 12.7 157 3-159 280-436 (518)
12 KOG0880 Peptidyl-prolyl cis-tr 100.0 2.1E-47 4.5E-52 276.5 14.0 146 8-154 52-202 (217)
13 PRK10903 peptidyl-prolyl cis-t 100.0 6.5E-45 1.4E-49 269.8 19.1 151 1-154 29-189 (190)
14 KOG0882 Cyclophilin-related pe 100.0 3.7E-46 8E-51 297.7 12.3 152 2-153 406-557 (558)
15 PRK10791 peptidyl-prolyl cis-t 100.0 1E-44 2.2E-49 263.4 18.6 150 3-155 2-164 (164)
16 PLN03149 peptidyl-prolyl isome 100.0 5.4E-45 1.2E-49 269.6 17.3 146 8-154 31-186 (186)
17 PTZ00221 cyclophilin; Provisio 100.0 1.1E-44 2.5E-49 276.3 19.1 152 2-157 54-222 (249)
18 KOG0415 Predicted peptidyl pro 100.0 1.9E-45 4.1E-50 286.3 14.4 159 1-159 1-167 (479)
19 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.7E-45 5.8E-50 286.7 12.9 158 2-159 14-172 (439)
20 PTZ00060 cyclophilin; Provisio 100.0 4.4E-44 9.6E-49 264.3 17.9 147 7-155 27-183 (183)
21 cd01926 cyclophilin_ABH_like c 100.0 3.5E-44 7.6E-49 261.0 16.5 144 7-152 12-164 (164)
22 cd01920 cyclophilin_EcCYP_like 100.0 1.8E-43 3.8E-48 255.0 16.9 144 5-151 2-155 (155)
23 cd00317 cyclophilin cyclophili 100.0 3.2E-43 7E-48 251.4 17.3 146 4-150 1-146 (146)
24 KOG0879 U-snRNP-associated cyc 100.0 5.6E-44 1.2E-48 244.8 9.8 150 2-152 16-175 (177)
25 PF00160 Pro_isomerase: Cyclop 100.0 8E-42 1.7E-46 246.3 17.0 148 3-153 2-155 (155)
26 cd01924 cyclophilin_TLP40_like 100.0 1.3E-39 2.8E-44 239.0 16.4 139 6-155 3-175 (176)
27 KOG0111 Cyclophilin-type pepti 100.0 1.5E-39 3.2E-44 239.7 10.4 146 7-154 148-297 (298)
28 KOG0865 Cyclophilin type pepti 100.0 9.2E-32 2E-36 194.0 7.3 146 7-154 15-167 (167)
29 KOG0882 Cyclophilin-related pe 98.2 1.5E-06 3.3E-11 71.1 4.5 151 3-154 101-262 (558)
30 PRK00969 hypothetical protein; 97.6 0.00044 9.5E-09 57.8 8.1 98 11-133 205-306 (508)
31 TIGR03268 methan_mark_3 putati 97.5 0.00055 1.2E-08 57.1 8.7 98 11-133 202-303 (503)
32 PRK00969 hypothetical protein; 97.1 0.0078 1.7E-07 50.5 10.6 117 2-136 52-170 (508)
33 COG4070 Predicted peptidyl-pro 97.0 0.0036 7.8E-08 51.0 7.8 103 11-134 204-306 (512)
34 TIGR03268 methan_mark_3 putati 97.0 0.013 2.9E-07 49.1 11.0 116 2-135 48-166 (503)
35 COG4070 Predicted peptidyl-pro 96.6 0.0063 1.4E-07 49.6 6.4 38 11-48 377-416 (512)
36 PF12903 DUF3830: Protein of u 96.4 0.03 6.5E-07 39.9 7.7 111 8-133 6-130 (147)
37 PF04126 Cyclophil_like: Cyclo 95.6 0.2 4.3E-06 34.5 8.9 102 1-134 1-114 (120)
38 PF05913 DUF871: Bacterial pro 56.2 8.5 0.00018 31.5 2.1 50 83-133 299-349 (357)
39 PF06138 Chordopox_E11: Chordo 50.2 85 0.0018 21.9 5.9 46 3-48 6-61 (130)
40 COG2164 Uncharacterized conser 44.8 48 0.001 22.3 3.9 30 1-31 4-33 (126)
41 PF06563 DUF1125: Protein of u 44.3 27 0.00058 20.2 2.3 17 1-17 1-17 (55)
42 PHA03001 putative virion core 43.9 77 0.0017 22.1 4.9 46 3-48 6-60 (132)
43 PF12396 DUF3659: Protein of u 41.9 38 0.00083 20.6 2.9 42 111-154 16-59 (64)
44 PF11314 DUF3117: Protein of u 41.9 16 0.00034 20.9 1.1 17 10-26 29-45 (51)
45 PF08415 NRPS: Nonribosomal pe 39.5 30 0.00066 20.2 2.2 27 122-150 4-30 (58)
46 cd01808 hPLIC_N Ubiquitin-like 33.3 1.1E+02 0.0024 18.3 4.5 32 1-35 1-32 (71)
47 PF08710 nsp9: nsp9 replicase; 25.7 74 0.0016 21.5 2.4 17 2-18 53-69 (111)
48 PF03531 SSrecog: Structure-sp 22.8 1.1E+02 0.0025 23.3 3.3 18 2-19 141-158 (222)
49 COG3589 Uncharacterized conser 22.6 93 0.002 25.5 2.9 49 83-132 300-349 (360)
50 PF13141 DUF3979: Protein of u 21.9 1.3E+02 0.0028 19.8 2.9 25 1-25 38-63 (114)
No 1
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3.3e-53 Score=306.89 Aligned_cols=158 Identities=59% Similarity=1.072 Sum_probs=152.1
Q ss_pred EEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCCC
Q 031385 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHN 82 (160)
Q Consensus 3 v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 82 (160)
|+|+|+.|+|+||||++.||++|+||++||+.++|+++.|||++|++++|+|++.+++.++.+.++..+++|..+.++|+
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h~ 81 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSHD 81 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCcC
Confidence 78999999999999999999999999999999999999999999999999999988888888888999999987788999
Q ss_pred ceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEEecCCCCC
Q 031385 83 ARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANPLAV 160 (160)
Q Consensus 83 ~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~~~pf~~ 160 (160)
++|+|+|+++++++++|||||+++++|+||++|+|||+|++||++|++|++.+++++++|+++|+|.+|.|++|||+.
T Consensus 82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf~~ 159 (159)
T cd01923 82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPFEE 159 (159)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCCCC
Confidence 999999999999999999999999999999999999999999999999999999889999999999999999999973
No 2
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=3.3e-52 Score=299.83 Aligned_cols=153 Identities=75% Similarity=1.256 Sum_probs=147.0
Q ss_pred CEEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCC
Q 031385 1 MSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLK 80 (160)
Q Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 80 (160)
|+|+|+|+.|+|+||||++.||++|+||++||+++||+|+.|||++|++++|+|++.+++.++.+.++..+++|..+.++
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~ 80 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLK 80 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999888888888889999999877889
Q ss_pred CCceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEE
Q 031385 81 HNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 153 (160)
Q Consensus 81 ~~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i 153 (160)
|+++|+|+|+++++++++|||||+++++|+||++|+|||+|++|||+|++|++.+++++++|..+|+|.+|.|
T Consensus 81 ~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 81 HDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred cCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.2e-51 Score=300.72 Aligned_cols=156 Identities=44% Similarity=0.744 Sum_probs=144.9
Q ss_pred EEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCC-------CccCcccc
Q 031385 4 TLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWG-------KKFNDEIR 76 (160)
Q Consensus 4 ~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~-------~~~~~e~~ 76 (160)
+|+|+.|+|+||||++.||++|+||++||+.++|+++.|||++|++++|+|++..++.++.+.++ ..+++|..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 47999999999999999999999999999999999999999999999999999877777666554 34667776
Q ss_pred ccCCCCceeEEEEecCCCCCCCceEEEecCC-CCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEEec
Q 031385 77 ESLKHNARGILSMANSGPNTNGSQFFISYAK-QPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHA 155 (160)
Q Consensus 77 ~~~~~~~~G~v~~~~~~~~~~~s~F~I~l~~-~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~~ 155 (160)
+.++|+++|+|+|+++++++++|||||++++ .|+||++|+|||+|++||++|++|++.+++++++|.++|+|.+|.|+.
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 7889999999999999999999999999975 799999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 031385 156 NPLA 159 (160)
Q Consensus 156 ~pf~ 159 (160)
|||+
T Consensus 161 ~pf~ 164 (166)
T cd01921 161 DPFP 164 (166)
T ss_pred CCCC
Confidence 9997
No 4
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-51 Score=274.20 Aligned_cols=159 Identities=68% Similarity=1.146 Sum_probs=156.8
Q ss_pred CEEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCC
Q 031385 1 MSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLK 80 (160)
Q Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 80 (160)
|+|+++|+.|+|.||||.+.+|++|+||+.+|...||++|.|||-.|++.+|+|++..+|.++.++||.+|++|+.+-|+
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lk 80 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLK 80 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCC-CCcccceEEEEEEEecCCCC
Q 031385 81 HNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG-DRPLAEIRINRVTIHANPLA 159 (160)
Q Consensus 81 ~~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~-~~p~~~v~I~~~~i~~~pf~ 159 (160)
|+.||.|+||+.||++++|||||+.+..|+||-+|++||+|++|+|.|+.|++.++++. .+|+.++.|+++.|+.+|||
T Consensus 81 h~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itihanp~a 160 (161)
T KOG0884|consen 81 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFA 160 (161)
T ss_pred hccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEecCcCC
Confidence 99999999999999999999999999999999999999999999999999999999888 69999999999999999998
No 5
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=9.8e-50 Score=291.77 Aligned_cols=158 Identities=46% Similarity=0.812 Sum_probs=151.3
Q ss_pred EEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCC
Q 031385 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKH 81 (160)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (160)
+|.|+|+.|+|+||||++.+|++|+||++||+.+||+++.|||++|++++|+|++.+++.++.+.++..+++|..+.++|
T Consensus 7 ~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~~~~~~ 86 (171)
T cd01925 7 KVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFHSRLRF 86 (171)
T ss_pred EEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccccCcCC
Confidence 68999999999999999999999999999999999999999999999999999998888888888999999998878889
Q ss_pred CceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEe-cCHHHHHHhhhCcCCCCCCcccceEEEEEEEecCCCC
Q 031385 82 NARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI-HGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANPLA 159 (160)
Q Consensus 82 ~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv-~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~~~pf~ 159 (160)
+++|+|+|+++++++++|||||++++.|+||++|+|||+|+ +++++|++|++.+++++++|.++++|.+|+|+.|||+
T Consensus 87 ~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~pf~ 165 (171)
T cd01925 87 NRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLENPFD 165 (171)
T ss_pred CCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcCCch
Confidence 99999999999999999999999999999999999999999 4688999999999999999999999999999999997
No 6
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=9.5e-50 Score=285.68 Aligned_cols=148 Identities=54% Similarity=0.917 Sum_probs=141.4
Q ss_pred EEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCCCc
Q 031385 4 TLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNA 83 (160)
Q Consensus 4 ~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 83 (160)
+|+|+.|+|+||||++.||++|+||++||+.+||+++.|||++|++++|+|++.+++.++.+.++..+++|..+.++|++
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 47999999999999999999999999999999999999999999999999999888888888888899999887899999
Q ss_pred eeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEE
Q 031385 84 RGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRV 151 (160)
Q Consensus 84 ~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~ 151 (160)
+|+|+|++.++++++|||||+++++|+||++|+|||+|++||++|++|++.+++++++|.++|+|.++
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999864
No 7
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-50 Score=274.64 Aligned_cols=153 Identities=54% Similarity=0.919 Sum_probs=149.2
Q ss_pred EEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCC
Q 031385 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKH 81 (160)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (160)
-|.|+|+.|.|++|||-+.||+||+||.+|++.+||+|..||||+++++|||||+++++.++.++|+.+|.+|.++.|+|
T Consensus 11 ~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~dLkh 90 (164)
T KOG0881|consen 11 NVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSDLKH 90 (164)
T ss_pred eEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhhhcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEEe
Q 031385 82 NARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIH 154 (160)
Q Consensus 82 ~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~ 154 (160)
...|.++||+.||+++||||||||++.+|||++|++||||..||+|+.++....++...+|..+++|.+..+.
T Consensus 91 TGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~~ 163 (164)
T KOG0881|consen 91 TGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYPS 163 (164)
T ss_pred cchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987653
No 8
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-50 Score=313.21 Aligned_cols=148 Identities=52% Similarity=0.805 Sum_probs=143.0
Q ss_pred cCeeEEEEECCCCChHHHHHHHHHHhcC-----------CcCCcEEEEeecCcEEEeccCC-CCCCCCcccCCCccCccc
Q 031385 8 NLGDIKCEIACDEVPKTAENFLALCASG-----------YYDGTIFHRNIKGFMIQGGDPT-GTGKGGTSIWGKKFNDEI 75 (160)
Q Consensus 8 ~~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~~~ri~~~~~i~~G~~~-~~~~~~~~~~~~~~~~e~ 75 (160)
+.|||++|||.|.||+||+||+.||++. .|+|+.||||+++|+|||||.. ++|.++.++||.+|.||+
T Consensus 21 ~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~FdDEn 100 (372)
T KOG0546|consen 21 PAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEKFDDEN 100 (372)
T ss_pred ccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCccccccccccccc
Confidence 5799999999999999999999999874 5999999999999999999998 899999999999999999
Q ss_pred cccCCCCceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEEec
Q 031385 76 RESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHA 155 (160)
Q Consensus 76 ~~~~~~~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~~ 155 (160)
+ .++|+++++||||+.|||+||||||||+.+.|+||++|+|||+|++|++||+.|+.+.++.+++|+.+|+|.+|+++.
T Consensus 101 F-~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~ 179 (372)
T KOG0546|consen 101 F-ELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELV 179 (372)
T ss_pred c-eeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEeccccccc
Confidence 8 899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 031385 156 N 156 (160)
Q Consensus 156 ~ 156 (160)
.
T Consensus 180 ~ 180 (372)
T KOG0546|consen 180 K 180 (372)
T ss_pred c
Confidence 3
No 9
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.2e-48 Score=279.31 Aligned_cols=146 Identities=59% Similarity=0.997 Sum_probs=138.6
Q ss_pred EEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCCCc
Q 031385 4 TLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNA 83 (160)
Q Consensus 4 ~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 83 (160)
+|+|+.|+|+||||++.||++|+||++||+.+||+++.|||++|++++|+|++.+++.++.+.++.++++|..+.++|++
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~ 80 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG 80 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence 47999999999999999999999999999999999999999999999999999888888888888899999777899999
Q ss_pred eeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEE
Q 031385 84 RGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINR 150 (160)
Q Consensus 84 ~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~ 150 (160)
+|+|+|++.++++++|||||+++++|+||++|+|||+|++||+||++|++.+++ +++|.++|+|.+
T Consensus 81 ~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 81 AGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 999999999999999999999999999999999999999999999999999997 889999999963
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-48 Score=276.84 Aligned_cols=149 Identities=52% Similarity=0.890 Sum_probs=133.8
Q ss_pred EEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCC-CCCCcccCCCccCccccccCC
Q 031385 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGT-GKGGTSIWGKKFNDEIRESLK 80 (160)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~-~~~~~~~~~~~~~~e~~~~~~ 80 (160)
+|+++|+.|+|+||||++.||+||+||++||+.+||+|+.|||++|++++||||+... +.+++ +.++++|+.+ ..
T Consensus 1 ~v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~-~~ 76 (158)
T COG0652 1 TVILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFA-LN 76 (158)
T ss_pred CceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccc-cc
Confidence 3789999999999999999999999999999999999999999999999999999865 66555 4789999773 44
Q ss_pred CCc--eeEEEEecCC-CCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCC----CcccceEEEEEEE
Q 031385 81 HNA--RGILSMANSG-PNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGD----RPLAEIRINRVTI 153 (160)
Q Consensus 81 ~~~--~G~v~~~~~~-~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~----~p~~~v~I~~~~i 153 (160)
|.+ +|+||||+.+ |++++|||||++.++|+||++|+|||+|++||++|++|++..+...+ .|..+++|.++.+
T Consensus 77 ~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (158)
T COG0652 77 GDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI 156 (158)
T ss_pred cccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence 445 9999999998 99999999999999999999999999999999999999998887654 5668899988877
Q ss_pred e
Q 031385 154 H 154 (160)
Q Consensus 154 ~ 154 (160)
+
T Consensus 157 ~ 157 (158)
T COG0652 157 V 157 (158)
T ss_pred e
Confidence 5
No 11
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-48 Score=306.00 Aligned_cols=157 Identities=55% Similarity=1.009 Sum_probs=155.4
Q ss_pred EEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCCC
Q 031385 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHN 82 (160)
Q Consensus 3 v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 82 (160)
|.|+|+.|.+.|||++|.+|++|+||+.||+.+||+|+.|||.+.|++||||||+++|.++.++||.+|.+|+.+.+.|+
T Consensus 280 vrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~~~l~H~ 359 (518)
T KOG0883|consen 280 VRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFCSNLSHD 359 (518)
T ss_pred EEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccccccCCCCCcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEEecCCCC
Q 031385 83 ARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANPLA 159 (160)
Q Consensus 83 ~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~~~pf~ 159 (160)
.||+|+||+.|+|++||||||+..++.+||++|++||+||.|+++|.+|++.+++++.+|.++|+|.++.|-.|||+
T Consensus 360 gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFVdPfe 436 (518)
T KOG0883|consen 360 GRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFVDPFE 436 (518)
T ss_pred CcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEeeCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996
No 12
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-47 Score=276.53 Aligned_cols=146 Identities=50% Similarity=0.792 Sum_probs=139.8
Q ss_pred cCeeEEEEECCCCChHHHHHHHHHHhcC----CcCCcEEEEeecCcEEEeccCC-CCCCCCcccCCCccCccccccCCCC
Q 031385 8 NLGDIKCEIACDEVPKTAENFLALCASG----YYDGTIFHRNIKGFMIQGGDPT-GTGKGGTSIWGKKFNDEIRESLKHN 82 (160)
Q Consensus 8 ~~G~i~ieL~~~~aP~~~~nF~~l~~~~----~y~g~~~~ri~~~~~i~~G~~~-~~~~~~~~~~~~~~~~e~~~~~~~~ 82 (160)
..|||+|+||++.+|+||+||.+||.++ -|.|+.||||+||++|||||.. +++.++.++|++++++|+. .|+|+
T Consensus 52 ~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DENf-~LkH~ 130 (217)
T KOG0880|consen 52 PVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDENF-KLKHD 130 (217)
T ss_pred eccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCccc-eeecC
Confidence 5699999999999999999999999943 5999999999999999999998 6799999999999999998 89999
Q ss_pred ceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEEe
Q 031385 83 ARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIH 154 (160)
Q Consensus 83 ~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~ 154 (160)
++|.||||+.|++++|||||||+...+|||++|+|||+|++||++|.+|+..+++++++|+++++|.+|.-+
T Consensus 131 rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l 202 (217)
T KOG0880|consen 131 RPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGEL 202 (217)
T ss_pred CCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999844
No 13
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=6.5e-45 Score=269.84 Aligned_cols=151 Identities=33% Similarity=0.554 Sum_probs=132.7
Q ss_pred CEEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCC
Q 031385 1 MSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLK 80 (160)
Q Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 80 (160)
.+|+|+|+.|+|+||||++.||++++||++||+.+||+|+.|||++|++++|+|++..... ...++..+.+|..+.+
T Consensus 29 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~--~~~~~~~~~~e~~~~l- 105 (190)
T PRK10903 29 PHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEADNGL- 105 (190)
T ss_pred cEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCC--CCCCCCcccCcccccC-
Confidence 3689999999999999999999999999999999999999999999999999998764322 1223556777865555
Q ss_pred CCceeEEEEecCC-CCCCCceEEEecCCCCCCCC-----CceEEEEEecCHHHHHHhhhCcCCC----CCCcccceEEEE
Q 031385 81 HNARGILSMANSG-PNTNGSQFFISYAKQPHLNG-----LYTVFGRVIHGFEVLDLMEKAQTGS----GDRPLAEIRINR 150 (160)
Q Consensus 81 ~~~~G~v~~~~~~-~~~~~s~F~I~l~~~~~ld~-----~~~vfG~Vv~G~~vl~~I~~~~~~~----~~~p~~~v~I~~ 150 (160)
|+++|+|+|++.+ +++++|||||++++.++||+ +|+|||+|++|||||++|++.++++ +++|.++|+|.+
T Consensus 106 ~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~ 185 (190)
T PRK10903 106 RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS 185 (190)
T ss_pred cCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEE
Confidence 4589999999865 89999999999999999984 8999999999999999999999976 479999999999
Q ss_pred EEEe
Q 031385 151 VTIH 154 (160)
Q Consensus 151 ~~i~ 154 (160)
|+|+
T Consensus 186 ~~v~ 189 (190)
T PRK10903 186 AKVL 189 (190)
T ss_pred EEEe
Confidence 9986
No 14
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-46 Score=297.69 Aligned_cols=152 Identities=49% Similarity=0.868 Sum_probs=149.4
Q ss_pred EEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCC
Q 031385 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKH 81 (160)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (160)
++.+||+.|+|.|.||+++||+|++||...|+.+||+|..||||+++++||+|||.++|.++.++|+..|++|.++.|+|
T Consensus 406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~lrh 485 (558)
T KOG0882|consen 406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNLRH 485 (558)
T ss_pred ceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEE
Q 031385 82 NARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 153 (160)
Q Consensus 82 ~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i 153 (160)
+++-+|+||+.|+|++|||||||+.+.||||++|++||||+.||+|+++|++..+++.++|.+++.|.+++|
T Consensus 486 drpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 486 DRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred CCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886
No 15
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1e-44 Score=263.37 Aligned_cols=150 Identities=39% Similarity=0.657 Sum_probs=130.0
Q ss_pred EEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCCC
Q 031385 3 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHN 82 (160)
Q Consensus 3 v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 82 (160)
|+|+|+.|+|+|+||++.||++++||++||+.+||+++.|||++|++++|||++... .+ ...++..+++|....+.|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~~-~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MK-QKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-CC-cCCCCCCcCCcccccccC-
Confidence 679999999999999999999999999999999999999999999999999986421 11 122355677786656665
Q ss_pred ceeEEEEecCC-CCCCCceEEEecCCCCCCC--------CCceEEEEEecCHHHHHHhhhCcCCCC----CCcccceEEE
Q 031385 83 ARGILSMANSG-PNTNGSQFFISYAKQPHLN--------GLYTVFGRVIHGFEVLDLMEKAQTGSG----DRPLAEIRIN 149 (160)
Q Consensus 83 ~~G~v~~~~~~-~~~~~s~F~I~l~~~~~ld--------~~~~vfG~Vv~G~~vl~~I~~~~~~~~----~~p~~~v~I~ 149 (160)
++|+||||+.+ +++++|||||+++++++|| ++|+|||+|++||+||++|++.+++++ ++|..+|+|.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 79999999875 8999999999999988776 269999999999999999999999763 6999999999
Q ss_pred EEEEec
Q 031385 150 RVTIHA 155 (160)
Q Consensus 150 ~~~i~~ 155 (160)
+|.|.+
T Consensus 159 ~~~i~~ 164 (164)
T PRK10791 159 SVTVSE 164 (164)
T ss_pred EEEEeC
Confidence 998864
No 16
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=5.4e-45 Score=269.57 Aligned_cols=146 Identities=49% Similarity=0.756 Sum_probs=135.9
Q ss_pred cCeeEEEEECCCCChHHHHHHHHHHhcCC--------cCCcEEEEeecCcEEEeccCC-CCCCCCcccCCCccCcccccc
Q 031385 8 NLGDIKCEIACDEVPKTAENFLALCASGY--------YDGTIFHRNIKGFMIQGGDPT-GTGKGGTSIWGKKFNDEIRES 78 (160)
Q Consensus 8 ~~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~~~ri~~~~~i~~G~~~-~~~~~~~~~~~~~~~~e~~~~ 78 (160)
+.|+|+||||.+.+|++|+||++||++++ |+++.||||+|++++|+|++. .++.++.+.++..+++|.. .
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~~-~ 109 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENF-I 109 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCccc-c
Confidence 57999999999999999999999998765 999999999999999999975 6677777888888888875 6
Q ss_pred CCCCceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEe-cCHHHHHHhhhCcCCCCCCcccceEEEEEEEe
Q 031385 79 LKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI-HGFEVLDLMEKAQTGSGDRPLAEIRINRVTIH 154 (160)
Q Consensus 79 ~~~~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv-~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~ 154 (160)
++|.++|+|+|+++++++++|||||+++++|+||++|+|||+|+ +||+||++|++.+++++++|.++|+|.+|+++
T Consensus 110 ~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 110 AKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred cccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 78989999999999999999999999999999999999999999 89999999999999999999999999999874
No 17
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.1e-44 Score=276.27 Aligned_cols=152 Identities=28% Similarity=0.380 Sum_probs=137.7
Q ss_pred EEEEEec-----CeeEEEEECCCCChHHHHHHHHHHhcC-----------CcCCcEEEEeecC-cEEEeccCCCCCCCCc
Q 031385 2 SVTLHTN-----LGDIKCEIACDEVPKTAENFLALCASG-----------YYDGTIFHRNIKG-FMIQGGDPTGTGKGGT 64 (160)
Q Consensus 2 ~v~~~T~-----~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~~~ri~~~-~~i~~G~~~~~~~~~~ 64 (160)
.|.|+++ .|+|+||||.+.||+||+||+.||++. +|+|+.|||++++ +++|+||+... +.
T Consensus 54 rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~---g~ 130 (249)
T PTZ00221 54 RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF---NV 130 (249)
T ss_pred EEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC---Cc
Confidence 4667765 578999999999999999999999853 3999999999986 89999997632 34
Q ss_pred ccCCCccCccccccCCCCceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCccc
Q 031385 65 SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLA 144 (160)
Q Consensus 65 ~~~~~~~~~e~~~~~~~~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~ 144 (160)
+.++..+++|.. .++|+++|+|+|++.++++++||||||+.++|+||++|+|||+|++||+||++|++.+++.+++|.+
T Consensus 131 s~~G~~f~dE~~-~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~ 209 (249)
T PTZ00221 131 SSTGTPIADEGY-RHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLL 209 (249)
T ss_pred cCCCCcccCccc-cccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCC
Confidence 566888999976 7889999999999999999999999999999999999999999999999999999999988999999
Q ss_pred ceEEEEEEEecCC
Q 031385 145 EIRINRVTIHANP 157 (160)
Q Consensus 145 ~v~I~~~~i~~~p 157 (160)
+|+|.+|+++++|
T Consensus 210 ~V~I~~Cgvl~~~ 222 (249)
T PTZ00221 210 PVTVSFCGALTGE 222 (249)
T ss_pred CeEEEECeEecCC
Confidence 9999999999987
No 18
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-45 Score=286.29 Aligned_cols=159 Identities=43% Similarity=0.730 Sum_probs=152.9
Q ss_pred CEEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCC-------ccCc
Q 031385 1 MSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGK-------KFND 73 (160)
Q Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~-------~~~~ 73 (160)
|+|+|+|++|+|+|+||-+++|.+|.|||+||+-+||+.|.||-|..++.+|.|||+++|.|+.++|+. .|..
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffea 80 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEA 80 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999988853 3678
Q ss_pred cccccCCCCceeEEEEecCCCCCCCceEEEecCCC-CCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEE
Q 031385 74 EIRESLKHNARGILSMANSGPNTNGSQFFISYAKQ-PHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVT 152 (160)
Q Consensus 74 e~~~~~~~~~~G~v~~~~~~~~~~~s~F~I~l~~~-~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~ 152 (160)
|..+.++|.+.|+|+|++.|.+.+||||||||+++ ..||++|+|||+|++||++|.+|+.+.++++++|.++|+|++..
T Consensus 81 E~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTi 160 (479)
T KOG0415|consen 81 EFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTI 160 (479)
T ss_pred hhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeE
Confidence 99999999999999999999999999999999875 68999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 031385 153 IHANPLA 159 (160)
Q Consensus 153 i~~~pf~ 159 (160)
||.|||+
T Consensus 161 iLdDPFd 167 (479)
T KOG0415|consen 161 ILDDPFD 167 (479)
T ss_pred EecCCCC
Confidence 9999996
No 19
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-45 Score=286.71 Aligned_cols=158 Identities=44% Similarity=0.805 Sum_probs=155.0
Q ss_pred EEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCC
Q 031385 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKH 81 (160)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (160)
+|+|.|+.|+|.||||+.+||++|.||++||..+||+|+.|||+.|+|++|||++.++|.|+.++|+.++.+|.++++++
T Consensus 14 kvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~h~Rlrf 93 (439)
T KOG0885|consen 14 KVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEFHPRLRF 93 (439)
T ss_pred eEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhhcCcceee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEe-cCHHHHHHhhhCcCCCCCCcccceEEEEEEEecCCCC
Q 031385 82 NARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI-HGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANPLA 159 (160)
Q Consensus 82 ~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv-~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~~~pf~ 159 (160)
+++|+|+||+.+.+.+|||||+||+++|+|++++++||+|+ +.+..+.+|..+.++.+.+|..|..|.+|+|+.|||+
T Consensus 94 ~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~npFd 172 (439)
T KOG0885|consen 94 NRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLINPFD 172 (439)
T ss_pred eccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeecCchh
Confidence 99999999999999999999999999999999999999999 5899999999999999999999999999999999996
No 20
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=4.4e-44 Score=264.30 Aligned_cols=147 Identities=50% Similarity=0.765 Sum_probs=135.0
Q ss_pred ecCeeEEEEECCCCChHHHHHHHHHHh---------cCCcCCcEEEEeecCcEEEeccCC-CCCCCCcccCCCccCcccc
Q 031385 7 TNLGDIKCEIACDEVPKTAENFLALCA---------SGYYDGTIFHRNIKGFMIQGGDPT-GTGKGGTSIWGKKFNDEIR 76 (160)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~---------~~~y~g~~~~ri~~~~~i~~G~~~-~~~~~~~~~~~~~~~~e~~ 76 (160)
++.|+|+||||.+.||++|+||++||+ .++|+++.|||++|++++|+|++. .++.++.+.++..+++|..
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e~~ 106 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENF 106 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCccc
Confidence 568999999999999999999999997 458999999999999999999976 5567777888888888855
Q ss_pred ccCCCCceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEEec
Q 031385 77 ESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHA 155 (160)
Q Consensus 77 ~~~~~~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~~ 155 (160)
.++|.++|+|+|++.++++++|||||+++++|+||++|+|||+|++||+||++|++.++ ++++|.++|+|.+|+++.
T Consensus 107 -~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 107 -KLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVTDCGELQ 183 (183)
T ss_pred -cccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCCCcCCeEEEEeEEcC
Confidence 78898899999999999999999999999999999999999999999999999999887 578999999999999873
No 21
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=3.5e-44 Score=260.97 Aligned_cols=144 Identities=52% Similarity=0.862 Sum_probs=133.9
Q ss_pred ecCeeEEEEECCCCChHHHHHHHHHHhc--C------CcCCcEEEEeecCcEEEeccCC-CCCCCCcccCCCccCccccc
Q 031385 7 TNLGDIKCEIACDEVPKTAENFLALCAS--G------YYDGTIFHRNIKGFMIQGGDPT-GTGKGGTSIWGKKFNDEIRE 77 (160)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~--~------~y~g~~~~ri~~~~~i~~G~~~-~~~~~~~~~~~~~~~~e~~~ 77 (160)
++.|+|+||||.+.||++|+||++||++ + +|+++.|||++|++++|+|++. .++.++.+.++..+++|..
T Consensus 12 ~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e~~- 90 (164)
T cd01926 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENF- 90 (164)
T ss_pred eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCCCc-
Confidence 5799999999999999999999999984 3 8999999999999999999975 5677778888888888865
Q ss_pred cCCCCceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEE
Q 031385 78 SLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVT 152 (160)
Q Consensus 78 ~~~~~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~ 152 (160)
.++|+++|+|+|++.++++++|||||+++++|+||++|+|||+|++|||||++|++.+++ +++|.++|+|.+|+
T Consensus 91 ~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I~~cG 164 (164)
T cd01926 91 KLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164 (164)
T ss_pred cccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence 788999999999999999999999999999999999999999999999999999999998 89999999999984
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.8e-43 Score=255.02 Aligned_cols=144 Identities=41% Similarity=0.622 Sum_probs=125.3
Q ss_pred EEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCCCce
Q 031385 5 LHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNAR 84 (160)
Q Consensus 5 ~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 84 (160)
|+|+.|+|+||||++.||++|+||++||+.+||+++.|||++|++++|+|++...... ..++..+.+|....+ |+++
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~~~~e~~~~~-~~~~ 78 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--KETLKPIKNEAGNGL-SNTR 78 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc--cccCCcccCcccccc-cCCc
Confidence 7899999999999999999999999999999999999999999999999988644322 223456777765444 4589
Q ss_pred eEEEEecCC-CCCCCceEEEecCCCCCCCC-----CceEEEEEecCHHHHHHhhhCcCCCC----CCcccceEEEEE
Q 031385 85 GILSMANSG-PNTNGSQFFISYAKQPHLNG-----LYTVFGRVIHGFEVLDLMEKAQTGSG----DRPLAEIRINRV 151 (160)
Q Consensus 85 G~v~~~~~~-~~~~~s~F~I~l~~~~~ld~-----~~~vfG~Vv~G~~vl~~I~~~~~~~~----~~p~~~v~I~~~ 151 (160)
|+||||+.+ +++++|||||+++++++||. +|+|||+|++||+||++|++.+++++ ++|..+|+|.++
T Consensus 79 G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 79 GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred eEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 999999865 89999999999999999995 79999999999999999999999775 589999988763
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=3.2e-43 Score=251.37 Aligned_cols=146 Identities=57% Similarity=0.896 Sum_probs=134.0
Q ss_pred EEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCCCc
Q 031385 4 TLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNA 83 (160)
Q Consensus 4 ~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 83 (160)
.++|+.|+|+||||++.||++|+||++||+.++|+++.|||++|++++|+|++..+...+ +.++..+++|..+...|.+
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~ 79 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR 79 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence 378999999999999999999999999999999999999999999999999987554432 3557788999887776889
Q ss_pred eeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEE
Q 031385 84 RGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINR 150 (160)
Q Consensus 84 ~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~ 150 (160)
+|+|+|++.++++++|||||+++++++||++|+|||+|++||++|++|++.+++++++|.++|+|..
T Consensus 80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 9999999999899999999999999999999999999999999999999999999999999999963
No 24
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-44 Score=244.84 Aligned_cols=150 Identities=47% Similarity=0.781 Sum_probs=142.0
Q ss_pred EEEEE-ecCeeEEEEECCCCChHHHHHHHHHHhcCC--------cCCcEEEEeecCcEEEeccCC-CCCCCCcccCCCcc
Q 031385 2 SVTLH-TNLGDIKCEIACDEVPKTAENFLALCASGY--------YDGTIFHRNIKGFMIQGGDPT-GTGKGGTSIWGKKF 71 (160)
Q Consensus 2 ~v~~~-T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~~~ri~~~~~i~~G~~~-~~~~~~~~~~~~~~ 71 (160)
.|.+- ++.|||.||||.|.+|+|++||++.|++.| |+++.|||++++++||+||.- +++.+..++|+.++
T Consensus 16 dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F 95 (177)
T KOG0879|consen 16 DVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTF 95 (177)
T ss_pred EEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCC
Confidence 34443 468999999999999999999999999986 999999999999999999976 88889999999999
Q ss_pred CccccccCCCCceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEE
Q 031385 72 NDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRV 151 (160)
Q Consensus 72 ~~e~~~~~~~~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~ 151 (160)
++|+. .++|+.+|+++||+.|++++|.|||||.+.+.+||++|+|||+|++|+.++++|++.++.++++|+-+|.|..|
T Consensus 96 ~DENF-tlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qC 174 (177)
T KOG0879|consen 96 PDENF-TLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQC 174 (177)
T ss_pred CCcce-eeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeec
Confidence 99988 89999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred E
Q 031385 152 T 152 (160)
Q Consensus 152 ~ 152 (160)
+
T Consensus 175 G 175 (177)
T KOG0879|consen 175 G 175 (177)
T ss_pred c
Confidence 6
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=8e-42 Score=246.32 Aligned_cols=148 Identities=55% Similarity=0.932 Sum_probs=131.1
Q ss_pred EEEEec-CeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCC--cccCCCccCcccc-cc
Q 031385 3 VTLHTN-LGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGG--TSIWGKKFNDEIR-ES 78 (160)
Q Consensus 3 v~~~T~-~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~--~~~~~~~~~~e~~-~~ 78 (160)
|.|+|+ .|+|+||||+++||++|+||++||+.++|+++.|||+.|++++|+|++..++..+ ....+.++++|.. ..
T Consensus 2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~ 81 (155)
T PF00160_consen 2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSL 81 (155)
T ss_dssp EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTS
T ss_pred EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCcccccccccccc
Confidence 789996 9999999999999999999999999999999999999999999999987543311 1223446888875 34
Q ss_pred CCCCceeEEEEecCC--CCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEE
Q 031385 79 LKHNARGILSMANSG--PNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 153 (160)
Q Consensus 79 ~~~~~~G~v~~~~~~--~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i 153 (160)
+.| ++|+|+|++.+ +++++|||||+|++.+++|++|+|||+|++||++|++|++.+++. +|.++|+|.+|+|
T Consensus 82 ~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 82 LKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp SSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred ccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 566 99999999875 788999999999999999999999999999999999999999876 9999999999987
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1.3e-39 Score=238.97 Aligned_cols=139 Identities=35% Similarity=0.614 Sum_probs=114.9
Q ss_pred EecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCC---------------------Cc
Q 031385 6 HTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKG---------------------GT 64 (160)
Q Consensus 6 ~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~---------------------~~ 64 (160)
+|+.|+|+||||++.||++|+||++||+.+||++++|||++|++++|+|++..++.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 589999999999999999999999999999999999999999999999998744322 12
Q ss_pred ccCCCccC----ccccccCCCCceeEEEEecCC--CCCCCceEEEecC-------CCCCCCCCceEEEEEecCHHHHHHh
Q 031385 65 SIWGKKFN----DEIRESLKHNARGILSMANSG--PNTNGSQFFISYA-------KQPHLNGLYTVFGRVIHGFEVLDLM 131 (160)
Q Consensus 65 ~~~~~~~~----~e~~~~~~~~~~G~v~~~~~~--~~~~~s~F~I~l~-------~~~~ld~~~~vfG~Vv~G~~vl~~I 131 (160)
+.++..+. .+....++|+++|+|||++.+ +++++|||||+++ +.|+||++|+|||+|++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 23333322 233345677799999999987 6899999999998 7899999999999999999999999
Q ss_pred hhCcCCCCCCcccceEEEEEEEec
Q 031385 132 EKAQTGSGDRPLAEIRINRVTIHA 155 (160)
Q Consensus 132 ~~~~~~~~~~p~~~v~I~~~~i~~ 155 (160)
+.. -.|.+++|++
T Consensus 163 ~~g-----------d~i~~~~~~~ 175 (176)
T cd01924 163 KVG-----------DKIESARVVE 175 (176)
T ss_pred cCC-----------CEEEEEEEec
Confidence 654 2366666653
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=239.75 Aligned_cols=146 Identities=47% Similarity=0.752 Sum_probs=138.6
Q ss_pred ecCeeEEEEECCCCChHHHHHHHHHHhcC--C-cCCcEEEEeecCcEEEeccCC-CCCCCCcccCCCccCccccccCCCC
Q 031385 7 TNLGDIKCEIACDEVPKTAENFLALCASG--Y-YDGTIFHRNIKGFMIQGGDPT-GTGKGGTSIWGKKFNDEIRESLKHN 82 (160)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~~--~-y~g~~~~ri~~~~~i~~G~~~-~~~~~~~~~~~~~~~~e~~~~~~~~ 82 (160)
-..|||+++|..+..|+|++||..||++. | |+|++||||+|.+++||||.+ +++.++.++|+.+|.+|+. .|+|.
T Consensus 148 ~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfddenf-~lkht 226 (298)
T KOG0111|consen 148 DRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDENF-TLKHT 226 (298)
T ss_pred cccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccccccccce-eeecC
Confidence 35799999999999999999999999875 3 999999999999999999998 8899999999999999988 89999
Q ss_pred ceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEEe
Q 031385 83 ARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIH 154 (160)
Q Consensus 83 ~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~ 154 (160)
.+|+|+||++|+|++||||||++....|||++|+|||.|++||+||+++++..+ +.|+|.+.|+|.+|+-+
T Consensus 227 ~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 227 MPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGKPQQKVKIVECGEI 297 (298)
T ss_pred CCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC-CCCCcceEEEEEecccc
Confidence 999999999999999999999999999999999999999999999999999877 78999999999999754
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.2e-32 Score=193.98 Aligned_cols=146 Identities=50% Similarity=0.786 Sum_probs=134.2
Q ss_pred ecCeeEEEEECCCCChHHHHHHHHHHhcC---CcCCcEEEE---eecCcEEEeccCC-CCCCCCcccCCCccCccccccC
Q 031385 7 TNLGDIKCEIACDEVPKTAENFLALCASG---YYDGTIFHR---NIKGFMIQGGDPT-GTGKGGTSIWGKKFNDEIRESL 79 (160)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~~---~y~g~~~~r---i~~~~~i~~G~~~-~~~~~~~~~~~~~~~~e~~~~~ 79 (160)
.+.|+++++|+.|..|+|++||..||++. -|++..||| ..+++++|+||.. .++.++.++|++++++|+. .+
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~DenF-il 93 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDENF-IL 93 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCcCc-EE
Confidence 57899999999999999999999999864 399999999 3357999999988 7789999999999999987 89
Q ss_pred CCCceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEEEEe
Q 031385 80 KHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIH 154 (160)
Q Consensus 80 ~~~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~~i~ 154 (160)
+|..+|.++||+.+|++++|||||+++...|||++++|||+|.+||+++++|+.... .++++..+|.|.+|+.+
T Consensus 94 khtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 94 KHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RNGKTSKKITIADCGQL 167 (167)
T ss_pred ecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cCCcccccEEEecCCcC
Confidence 999999999999999999999999999999999999999999999999999998555 78899999999999753
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.5e-06 Score=71.11 Aligned_cols=151 Identities=18% Similarity=0.172 Sum_probs=118.7
Q ss_pred EEEEecCe----eEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCC-CC---cccCCCc--c-
Q 031385 3 VTLHTNLG----DIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGK-GG---TSIWGKK--F- 71 (160)
Q Consensus 3 v~~~T~~G----~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~-~~---~~~~~~~--~- 71 (160)
+.+.|+.| .|.|+++.+-.|.-++-|...|+..++++..+.++...+++|.|+...... ++ .+....+ +
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 56788999 899999999999999999999999999999999999999999998652211 11 1111111 2
Q ss_pred CccccccCCCCceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhCcCCCCCCcccceEEEEE
Q 031385 72 NDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRV 151 (160)
Q Consensus 72 ~~e~~~~~~~~~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~~v~I~~~ 151 (160)
+.+.+-.++| ..-+....+....-.+-+|.+.-+..+.+..+..|+|++..|-++++.|.+..++....|..++.|.++
T Consensus 181 r~~l~~~~K~-eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 181 RTNLNFELKH-ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred cccccccccc-cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 2223335666 455666665544445668999888888899999999999999999999999999999999999999988
Q ss_pred EEe
Q 031385 152 TIH 154 (160)
Q Consensus 152 ~i~ 154 (160)
+..
T Consensus 260 elg 262 (558)
T KOG0882|consen 260 ELG 262 (558)
T ss_pred ehh
Confidence 753
No 30
>PRK00969 hypothetical protein; Provisional
Probab=97.55 E-value=0.00044 Score=57.81 Aligned_cols=98 Identities=28% Similarity=0.462 Sum_probs=67.4
Q ss_pred eEEEEECCCCChHHHHHHHHHHhcCCcC----CcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCCCceeE
Q 031385 11 DIKCEIACDEVPKTAENFLALCASGYYD----GTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGI 86 (160)
Q Consensus 11 ~i~ieL~~~~aP~~~~nF~~l~~~~~y~----g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~G~ 86 (160)
.+.+||.+ .+|.++++|+.+.+.+.++ -.+|.+ .+...+...+.|+. .. -++|+
T Consensus 205 y~eve~~~-~~p~s~EH~la~~~~G~f~Vd~~tstfI~------------------d~~L~g~~~p~En~-~~--R~~Gt 262 (508)
T PRK00969 205 YVEVELDP-GAPKSVEHFLALLEDGTFEVDFETSTFIA------------------DDRLQGLKIPEENF-EP--RRRGT 262 (508)
T ss_pred EEEEEEcC-CCCchHHHHHHHHhCCeEEEeeeecceEe------------------eccccCccCCcccc-Cc--cccce
Confidence 35677764 8999999999999988632 222211 12333455566654 22 36899
Q ss_pred EEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhh
Q 031385 87 LSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEK 133 (160)
Q Consensus 87 v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~ 133 (160)
|++.+.|.+ ...-||...+-+ ..-.|+|+|+|++|||+++--.+
T Consensus 263 VTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 263 VTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred EEEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 999987643 347899987765 34569999999999999865433
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=97.55 E-value=0.00055 Score=57.11 Aligned_cols=98 Identities=27% Similarity=0.455 Sum_probs=67.2
Q ss_pred eEEEEECCCCChHHHHHHHHHHhcCCcC----CcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCCCceeE
Q 031385 11 DIKCEIACDEVPKTAENFLALCASGYYD----GTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGI 86 (160)
Q Consensus 11 ~i~ieL~~~~aP~~~~nF~~l~~~~~y~----g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~G~ 86 (160)
.+.+||. ..+|.++++|+.+.+.+.++ -.+| | +.+...+...+.|+. .. -++|+
T Consensus 202 y~evE~~-~~~p~s~EH~la~~~~G~~~Vd~~tsTf--------i----------~d~~L~g~~~p~En~-~~--R~rGt 259 (503)
T TIGR03268 202 YVEVELD-PNAPVSVEHFLALMEDGTFRVDYRTSTF--------I----------SDDSLRGLDKPEENI-EK--RRRGA 259 (503)
T ss_pred EEEEEEc-CCCChhHHHHHHHHhCCeEEEeeeecce--------E----------ecccccCccCCcccc-Cc--cccee
Confidence 3567776 48999999999999988632 2222 1 112333445566654 22 36899
Q ss_pred EEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhh
Q 031385 87 LSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEK 133 (160)
Q Consensus 87 v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~ 133 (160)
|++.+.|.+ ....||-..+-+ ..-.|+|+|+|+.|||+++--++
T Consensus 260 VTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 260 VTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred EEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence 999987643 347899887755 34569999999999999865443
No 32
>PRK00969 hypothetical protein; Provisional
Probab=97.11 E-value=0.0078 Score=50.54 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=75.4
Q ss_pred EEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCC
Q 031385 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKH 81 (160)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (160)
...+.|+.|.|+|||. ....++..++..++. |.|..++=. ...-+-+|....+ +..+.. -..
T Consensus 52 ~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~-s~~~vAfGp~~s~-----------l~p~~~--~~~ 113 (508)
T PRK00969 52 KYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWT-SRSAVAFGPFESD-----------LEPSRE--EYE 113 (508)
T ss_pred eEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEec-cccceeEcccccC-----------cccccC--cce
Confidence 4578999999999998 555667777777665 566666433 3334555644311 111111 112
Q ss_pred CceeEEEEecCCCCCCCceEEEecCCCCC-CCC-CceEEEEEecCHHHHHHhhhCcC
Q 031385 82 NARGILSMANSGPNTNGSQFFISYAKQPH-LNG-LYTVFGRVIHGFEVLDLMEKAQT 136 (160)
Q Consensus 82 ~~~G~v~~~~~~~~~~~s~F~I~l~~~~~-ld~-~~~vfG~Vv~G~~vl~~I~~~~~ 136 (160)
..++-|.+.-.|-+...+.+.|...+... +.- .--+||+|+.|..+|+++.....
T Consensus 114 y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~D~ 170 (508)
T PRK00969 114 YERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDGDR 170 (508)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCCCe
Confidence 36778888777777777778887765421 111 12899999999999999976533
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0036 Score=51.02 Aligned_cols=103 Identities=29% Similarity=0.456 Sum_probs=67.7
Q ss_pred eEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCCCceeEEEEe
Q 031385 11 DIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMA 90 (160)
Q Consensus 11 ~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~G~v~~~ 90 (160)
.+.+||.+ .+|.++++|++|.+.+.+. .....+.++. .++....+.+.|+. .++ .+|.+++.
T Consensus 204 y~eve~s~-nsP~saEH~lalmedG~lr----i~~~tntfis----------~~~lq~~~~~~en~-d~R--erG~iTvR 265 (512)
T COG4070 204 YFEVELSR-NSPKSAEHFLALMEDGTLR----IDVTTNTFIS----------DDTLQEEKVPEENF-DLR--ERGAITVR 265 (512)
T ss_pred EEEEEeCC-CCchhHHHHHHHhhcceEE----EEEeccceee----------ccccccccCChhhh-hhh--hcceEEEE
Confidence 46778875 7999999999999886421 1111222221 12333455666655 343 58999999
Q ss_pred cCCCCCCCceEEEecCCCCCCCCCceEEEEEecCHHHHHHhhhC
Q 031385 91 NSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKA 134 (160)
Q Consensus 91 ~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~G~~vl~~I~~~ 134 (160)
+.|.+ ...-||...+-++ .-.|.++|+|.+||+.++--.++
T Consensus 266 n~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~eG 306 (512)
T COG4070 266 NVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEEG 306 (512)
T ss_pred eeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEecccC
Confidence 87643 3478888866542 34689999999999998755443
No 34
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.99 E-value=0.013 Score=49.09 Aligned_cols=116 Identities=12% Similarity=0.176 Sum_probs=75.2
Q ss_pred EEEEEecCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccCccccccCCC
Q 031385 2 SVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKH 81 (160)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (160)
...+.|+.|.|+|+|- ....+++-|++.++. |.|..++=..+ .-+-+|....+ +.... .-..
T Consensus 48 ~y~IkTtkG~i~iel~--~~~~~~~~w~e~y~~--~e~~~i~W~s~-~~vAfGp~~sd-----------l~p~~--~~~~ 109 (503)
T TIGR03268 48 EYLIKTTKGEVVIELT--PNTEAGKFWSEIYKE--LEGKQIRWTTP-QEVAFGPFPSD-----------LEPSR--EPSE 109 (503)
T ss_pred eEEEEccCceEEEEec--CCchHHHHHHHHHHh--hcCCceeecch-hheeeCcccCC-----------ccccC--Ccce
Confidence 4578999999999998 356677777777664 55655533322 33444543211 11111 1122
Q ss_pred CceeEEEEecCCCCCCCceEEEecCCCCC-C--CCCceEEEEEecCHHHHHHhhhCc
Q 031385 82 NARGILSMANSGPNTNGSQFFISYAKQPH-L--NGLYTVFGRVIHGFEVLDLMEKAQ 135 (160)
Q Consensus 82 ~~~G~v~~~~~~~~~~~s~F~I~l~~~~~-l--d~~~~vfG~Vv~G~~vl~~I~~~~ 135 (160)
..++-|.+.-.|-+...+.+.|...+... + ...--+||+|+.|..+|+++....
T Consensus 110 y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~D 166 (503)
T TIGR03268 110 YERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDGD 166 (503)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCCC
Confidence 46788888877777777788888766431 2 125689999999999999996653
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0063 Score=49.64 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=26.8
Q ss_pred eEEEEECCCCChHHHHHHHHHHhcC--CcCCcEEEEeecC
Q 031385 11 DIKCEIACDEVPKTAENFLALCASG--YYDGTIFHRNIKG 48 (160)
Q Consensus 11 ~i~ieL~~~~aP~~~~nF~~l~~~~--~y~g~~~~ri~~~ 48 (160)
-|.||||.+.||.++..|.++..-. ---..++|-+.++
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~kpVGkL~Vhfay~d 416 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKTKPVGKLKVHFAYDD 416 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcccccccccceEEEEEeCC
Confidence 4899999999999999999987532 1222344444454
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=96.36 E-value=0.03 Score=39.87 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=52.4
Q ss_pred cCeeEEEEECCCCChHHHHHHHHHHhcCCcCCcEEEEeecC--cEEEeccCCCCCCCCcccCCCccCccccccCCCCcee
Q 031385 8 NLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKG--FMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARG 85 (160)
Q Consensus 8 ~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~~~ri~~~--~~i~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~G 85 (160)
.--.++.+|..|.||+||+.|.+..= |.+..+|-..-+ .++..++.. ......|+....+ .+|
T Consensus 6 ~g~~~~A~l~~d~AP~Tcaa~~~~LP---~~~~~~HarwSG~ei~~~l~~~~----------~~~~~~EN~T~~P--~pG 70 (147)
T PF12903_consen 6 RGVSFTARLLDDKAPKTCAAFWEALP---LKGKVIHARWSGEEIWIPLPDFD----------PFEPGRENHTVTP--IPG 70 (147)
T ss_dssp TTEEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE--S----------SS---S-SEESS----TT
T ss_pred CCeEEEEEEcccCChHHHHHHHHhCC---CCCcEEEEEEECcEEEEECCCcC----------cCCCCCCcCcccC--CCC
Confidence 34478999999999999999999872 333334433322 223333321 1112345543333 467
Q ss_pred EEEEe--cC-----CCC-CCCceEEEecCCCCCC-CC---CceEEEEEecCHHHHHHhhh
Q 031385 86 ILSMA--NS-----GPN-TNGSQFFISYAKQPHL-NG---LYTVFGRVIHGFEVLDLMEK 133 (160)
Q Consensus 86 ~v~~~--~~-----~~~-~~~s~F~I~l~~~~~l-d~---~~~vfG~Vv~G~~vl~~I~~ 133 (160)
-|.+. .+ .++ -....+|+-.+..-.. +. .-.+|++|++|++-|.++.+
T Consensus 71 di~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 71 DILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACR 130 (147)
T ss_dssp EEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHH
T ss_pred cEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHH
Confidence 76665 11 011 1122333333322110 11 14689999999998876643
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=95.57 E-value=0.2 Score=34.49 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=58.1
Q ss_pred CEEEEEecCeeEEEEECCCCChHHHHHHHHHHh----cCCcCCcEEEEeecCcEEEeccCCCCCCCCcccCCCccC-ccc
Q 031385 1 MSVTLHTNLGDIKCEIACDEVPKTAENFLALCA----SGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFN-DEI 75 (160)
Q Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~----~~~y~g~~~~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~-~e~ 75 (160)
|++.++-....+.++|+.. .|++.|+++.= -..|.+ .+|--.|. ..+ +|.
T Consensus 1 mkI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~-E~y~~~p~---------------------~l~~~~~ 55 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGN-EKYFSLPL---------------------KLPTEEN 55 (120)
T ss_dssp EEEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTT-EEEEE-S--------------------------SSS
T ss_pred CeEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCc-eEEEeCCC---------------------CCCcccC
Confidence 8899999988999999976 78889988762 123322 22211111 011 111
Q ss_pred cccCCCCceeEEEEecCCCCCCCceEEEecCCCC-------CCCCCceEEEEEecCHHHHHHhhhC
Q 031385 76 RESLKHNARGILSMANSGPNTNGSQFFISYAKQP-------HLNGLYTVFGRVIHGFEVLDLMEKA 134 (160)
Q Consensus 76 ~~~~~~~~~G~v~~~~~~~~~~~s~F~I~l~~~~-------~ld~~~~vfG~Vv~G~~vl~~I~~~ 134 (160)
. .- ....|-|++-..+. .|.|-.++.| .+-....++|+|.+|.+.+.++...
T Consensus 56 ~-~~-~~~~GDi~Yw~pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~~ 114 (120)
T PF04126_consen 56 P-RS-SVEAGDIAYWPPGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKGG 114 (120)
T ss_dssp E-ES-SB-TTEEEEECCCT-----EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--TT
T ss_pred c-cc-cccCceEEEeCCCC-----EEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCCC
Confidence 1 11 13578888764432 3777776664 3445688999999999999888543
No 38
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=56.21 E-value=8.5 Score=31.53 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=35.0
Q ss_pred ceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEec-CHHHHHHhhh
Q 031385 83 ARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIH-GFEVLDLMEK 133 (160)
Q Consensus 83 ~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv~-G~~vl~~I~~ 133 (160)
.+|.|.+-+........+.=|++.+.|. |++.-|+|+|.+ -+..|+-|..
T Consensus 299 ~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 299 KRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp -TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred cCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 5899999988777778899999999884 899999999995 6888888854
No 39
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=50.25 E-value=85 Score=21.86 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=33.0
Q ss_pred EEEEecCeeEEEEECCCCCh---------HHHHHHHHHHhcC-CcCCcEEEEeecC
Q 031385 3 VTLHTNLGDIKCEIACDEVP---------KTAENFLALCASG-YYDGTIFHRNIKG 48 (160)
Q Consensus 3 v~~~T~~G~i~ieL~~~~aP---------~~~~nF~~l~~~~-~y~g~~~~ri~~~ 48 (160)
|.|+|..||+.+..-.+.++ ++++.|++..+.= .-+.+.|+-++++
T Consensus 6 IfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 6 IFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 67899999988877755433 3677898887641 1367788887776
No 40
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=44.76 E-value=48 Score=22.30 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=24.2
Q ss_pred CEEEEEecCeeEEEEECCCCChHHHHHHHHH
Q 031385 1 MSVTLHTNLGDIKCEIACDEVPKTAENFLAL 31 (160)
Q Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l 31 (160)
|.+.+.-..|.-++||+.+. |.++.....-
T Consensus 4 MRiri~fEsg~c~~eL~ee~-pE~vr~i~d~ 33 (126)
T COG2164 4 MRIRITFESGHCTGELDEEN-PESVRRIYDS 33 (126)
T ss_pred EEEEEEEecceEEEEccccC-hHHHHHHHHh
Confidence 67777766799999999877 9999877554
No 41
>PF06563 DUF1125: Protein of unknown function (DUF1125); InterPro: IPR009503 This entry is represented by Bacteriophage bIL285, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short Lactococcus lactis and bacteriophage proteins. The function of this family is unknown.
Probab=44.27 E-value=27 Score=20.22 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.1
Q ss_pred CEEEEEecCeeEEEEEC
Q 031385 1 MSVTLHTNLGDIKCEIA 17 (160)
Q Consensus 1 m~v~~~T~~G~i~ieL~ 17 (160)
|+|.+.+-.|++.++.-
T Consensus 1 mtvilKd~~~~~iirF~ 17 (55)
T PF06563_consen 1 MTVILKDCYNNMIIRFS 17 (55)
T ss_pred CEEEecccCCCEEEEEe
Confidence 88999999998888763
No 42
>PHA03001 putative virion core protein; Provisional
Probab=43.87 E-value=77 Score=22.09 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=32.3
Q ss_pred EEEEecCeeEEEEEC--CCCCh------HHHHHHHHHHhcC-CcCCcEEEEeecC
Q 031385 3 VTLHTNLGDIKCEIA--CDEVP------KTAENFLALCASG-YYDGTIFHRNIKG 48 (160)
Q Consensus 3 v~~~T~~G~i~ieL~--~~~aP------~~~~nF~~l~~~~-~y~g~~~~ri~~~ 48 (160)
|.|+|..||+.+..- +..|| +++++|++....= .-+.+.|+-++++
T Consensus 6 IfLEsd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd 60 (132)
T PHA03001 6 IFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKKYIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEeccCCceEEEEcCCCccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 678999998777653 34455 4778998887641 2467888888776
No 43
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=41.89 E-value=38 Score=20.55 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=26.6
Q ss_pred CCCCceEEEEEecCHHHHHHhhhCcCCCCCCccc--ceEEEEEEEe
Q 031385 111 LNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLA--EIRINRVTIH 154 (160)
Q Consensus 111 ld~~~~vfG~Vv~G~~vl~~I~~~~~~~~~~p~~--~v~I~~~~i~ 154 (160)
+|..-.++|+|++| -+.+|.-..++++|.... -=.|-++..+
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G~I~d~~G~viGkae~~ 59 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDGDILDKDGNVIGKAEPI 59 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCCCEECCCCCEEEEEEeC
Confidence 45566899999999 566676667777664332 2344444444
No 44
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=41.87 E-value=16 Score=20.95 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=13.0
Q ss_pred eeEEEEECCCCChHHHH
Q 031385 10 GDIKCEIACDEVPKTAE 26 (160)
Q Consensus 10 G~i~ieL~~~~aP~~~~ 26 (160)
||++|||.+++|-...+
T Consensus 29 GRLVvEl~~~Ea~~L~~ 45 (51)
T PF11314_consen 29 GRLVVELNPDEAKELGE 45 (51)
T ss_pred cEEEEEeCHHHHHHHHH
Confidence 89999999877754433
No 45
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=39.51 E-value=30 Score=20.18 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=19.8
Q ss_pred ecCHHHHHHhhhCcCCCCCCcccceEEEE
Q 031385 122 IHGFEVLDLMEKAQTGSGDRPLAEIRINR 150 (160)
Q Consensus 122 v~G~~vl~~I~~~~~~~~~~p~~~v~I~~ 150 (160)
++|.+|++.+.+. .......-||+.++
T Consensus 4 ~sGv~vlRel~r~--~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 4 FSGVEVLRELARR--GGGRAAVMPVVFTS 30 (58)
T ss_pred ccHHHHHHHHHHh--cCCCCCcCCEEEeC
Confidence 4799999999887 34455666777665
No 46
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=33.29 E-value=1.1e+02 Score=18.26 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=25.3
Q ss_pred CEEEEEecCeeEEEEECCCCChHHHHHHHHHHhcC
Q 031385 1 MSVTLHTNLGDIKCEIACDEVPKTAENFLALCASG 35 (160)
Q Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~ 35 (160)
|++.+.|..|+..+++.++. |+..+.+.....
T Consensus 1 ~~i~vk~~~g~~~l~v~~~~---TV~~lK~~I~~~ 32 (71)
T cd01808 1 IKVTVKTPKDKEEIEIAEDA---SVKDFKEAVSKK 32 (71)
T ss_pred CEEEEEcCCCCEEEEECCCC---hHHHHHHHHHHH
Confidence 67899999999889997654 788888877543
No 47
>PF08710 nsp9: nsp9 replicase; InterPro: IPR014822 Nsp9 is a single-stranded RNA-binding viral protein likely to be involved in RNA synthesis []. The structure comprises of a single beta barrel []. ; GO: 0003723 RNA binding, 0019079 viral genome replication, 0019034 viral replication complex; PDB: 2J97_A 2J98_A 3EE7_B 1QZ8_A 1UW7_A.
Probab=25.68 E-value=74 Score=21.54 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=12.3
Q ss_pred EEEEEecCeeEEEEECC
Q 031385 2 SVTLHTNLGDIKCEIAC 18 (160)
Q Consensus 2 ~v~~~T~~G~i~ieL~~ 18 (160)
.|.+++.-|.++|||.+
T Consensus 53 ~vk~~~d~G~v~ieLeP 69 (111)
T PF08710_consen 53 YVKWEKDDGKVVIELEP 69 (111)
T ss_dssp EEEEE-TTSEEEEEB--
T ss_pred EEEEEccCCEEEEecCC
Confidence 47789999999999964
No 48
>PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin. An 81kDa protein is predicted, containing several highly-charged domains and a stretch of 75 residues that share 47% identity with a portion of the high mobility group (HMG) protein HMG1. This HMG box probably constitutes the structure recognition element for cisplatin-modified DNA, the probable recognition motif being the local duplex unwinding and bending that occurs on formation of intra-strand cross-links []. SSRP1 is the human homologue of a recently identified mouse protein that binds to recombination signal sequences []. These sequences have been postulated to form stem-loop structures, further implicating local bends and unwinding in DNA as a recognition target for HMG-box proteins. A Drosophila melanogaster cDNA encoding an HMG-box-containing protein has also been isolated [, ]. This protein shares 50% sequence identity with human SSRP1. In vitro binding studies using Drosophila SSRP showed that the protein binds to single-stranded DNA and RNA, with highest affinity for nucleotides G and U. Comparison of the predicted amino acid sequences among SSRP family members reveals 48% identity, with structural conservation in the C terminus of the HMG box, as well as domains of highly charged residues. The most highly conserved regions lie in the poorly understood N terminus, suggesting that this portion of the protein is critical for its function []. This entry contains Pob3 Q04636 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p (IPR013953 from INTERPRO)-Pob3p) []. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 3F5R_A 2GCL_B 2GCJ_D.
Probab=22.77 E-value=1.1e+02 Score=23.32 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=14.8
Q ss_pred EEEEEecCeeEEEEECCC
Q 031385 2 SVTLHTNLGDIKCEIACD 19 (160)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~ 19 (160)
.|.+-|+.||..|++|++
T Consensus 141 ~i~~ltPRGRydi~~y~~ 158 (222)
T PF03531_consen 141 DILCLTPRGRYDIEMYPT 158 (222)
T ss_dssp EEEEEETTEEEEEEE-SS
T ss_pred cccccccccccccccccc
Confidence 477889999999999984
No 49
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=22.62 E-value=93 Score=25.51 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=41.5
Q ss_pred ceeEEEEecCCCCCCCceEEEecCCCCCCCCCceEEEEEe-cCHHHHHHhh
Q 031385 83 ARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI-HGFEVLDLME 132 (160)
Q Consensus 83 ~~G~v~~~~~~~~~~~s~F~I~l~~~~~ld~~~~vfG~Vv-~G~~vl~~I~ 132 (160)
++|.|..-+.+.+..-.+.=|.+.+.+ .|++--|+|+|+ +-+..|+.|.
T Consensus 300 kkG~ItIDN~~ygrY~GE~QIa~k~~~-~~~~vNVVa~I~~edl~LLd~i~ 349 (360)
T COG3589 300 KKGSITIDNLGYGRYKGELQIALKNLE-NDGKVNVVANIIKEDLYLLDFIE 349 (360)
T ss_pred eeeeEEEecCCcccccceEEeeehhCc-ccccchhhhhccHhhhhHHHhcC
Confidence 679999988887777788889998776 678888999999 5899999994
No 50
>PF13141 DUF3979: Protein of unknown function (DUF3979)
Probab=21.86 E-value=1.3e+02 Score=19.80 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=19.3
Q ss_pred CEEEEEec-CeeEEEEECCCCChHHH
Q 031385 1 MSVTLHTN-LGDIKCEIACDEVPKTA 25 (160)
Q Consensus 1 m~v~~~T~-~G~i~ieL~~~~aP~~~ 25 (160)
|+|.+--+ .-.+.|.||.+-+|.++
T Consensus 38 msvelyfneyde~ritlyk~g~pitt 63 (114)
T PF13141_consen 38 MSVELYFNEYDEVRITLYKDGNPITT 63 (114)
T ss_pred eeeEEEecccceEEEEEEeCCCchhh
Confidence 77777644 57788999998888765
Done!