Query 031386
Match_columns 160
No_of_seqs 109 out of 184
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 13:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08510 PIG-P: PIG-P; InterP 100.0 9.5E-48 2.1E-52 293.6 12.6 117 41-157 2-126 (126)
2 KOG2257 N-acetylglucosaminyltr 100.0 4.6E-41 1E-45 259.6 8.5 122 38-159 3-128 (135)
3 PF07297 DPM2: Dolichol phosph 97.7 0.00016 3.5E-09 52.0 6.7 61 45-109 6-71 (78)
4 KOG3488 Dolichol phosphate-man 95.3 0.062 1.3E-06 38.5 5.8 65 44-110 7-74 (81)
5 PRK10633 hypothetical protein; 69.1 14 0.0003 26.7 4.9 54 51-116 17-76 (80)
6 COG0838 NuoA NADH:ubiquinone o 63.2 36 0.00079 26.3 6.5 51 41-103 60-111 (123)
7 PF09726 Macoilin: Transmembra 54.9 20 0.00043 35.0 4.6 58 47-108 75-137 (697)
8 PF08629 PDE8: PDE8 phosphodie 52.0 10 0.00023 25.2 1.6 17 2-19 19-35 (52)
9 TIGR01332 cyt_b559_alpha cytoc 50.8 3.5 7.6E-05 29.8 -0.8 35 82-117 17-54 (80)
10 PF11169 DUF2956: Protein of u 50.1 15 0.00032 27.8 2.4 21 43-63 83-103 (103)
11 PRK02557 psbE cytochrome b559 49.1 3.6 7.7E-05 29.8 -1.0 35 82-117 18-55 (81)
12 PF03475 3-alpha: 3-alpha doma 48.2 11 0.00023 23.8 1.2 15 145-159 1-15 (47)
13 CHL00064 psbE photosystem II p 48.1 3.4 7.3E-05 30.1 -1.3 35 82-117 18-55 (83)
14 PF05545 FixQ: Cbb3-type cytoc 46.6 16 0.00034 23.3 1.8 23 47-69 12-34 (49)
15 PF14163 SieB: Superinfection 43.7 1.1E+02 0.0023 23.5 6.4 19 65-83 14-32 (151)
16 KOG4455 Uncharacterized conser 42.9 20 0.00043 27.4 2.1 42 42-90 47-88 (110)
17 PF06916 DUF1279: Protein of u 41.2 35 0.00076 24.4 3.1 30 79-108 6-35 (91)
18 KOG3462 Predicted membrane pro 39.0 66 0.0014 24.3 4.3 51 6-64 3-55 (105)
19 PF11874 DUF3394: Domain of un 37.3 23 0.00049 29.2 1.8 18 79-97 155-172 (183)
20 PF00283 Cytochrom_B559: Cytoc 34.6 28 0.0006 20.8 1.4 13 82-94 13-28 (29)
21 PRK14750 kdpF potassium-transp 32.0 47 0.001 19.8 2.0 16 92-107 10-25 (29)
22 PF03994 DUF350: Domain of Unk 30.5 47 0.001 21.3 2.1 31 91-123 1-31 (54)
23 PF14089 KbaA: KinB-signalling 29.8 1.2E+02 0.0027 25.0 4.9 45 44-97 38-83 (180)
24 PF04341 DUF485: Protein of un 26.4 66 0.0014 23.0 2.5 23 43-65 56-78 (91)
25 PF01708 Gemini_mov: Geminivir 26.2 1.2E+02 0.0025 22.6 3.8 25 42-66 34-58 (91)
26 COG4062 MtrB Tetrahydromethano 26.2 43 0.00093 25.5 1.5 43 12-57 52-94 (108)
27 PF06196 DUF997: Protein of un 26.1 2.3E+02 0.005 20.2 5.2 58 52-116 13-76 (80)
28 PF07853 DUF1648: Protein of u 25.6 1.2E+02 0.0027 19.1 3.4 38 55-92 7-49 (51)
29 PF15012 DUF4519: Domain of un 25.2 16 0.00036 24.8 -0.8 25 80-104 27-51 (56)
30 PF08370 PDR_assoc: Plant PDR 24.4 2.4E+02 0.0053 19.4 5.0 16 68-85 14-29 (65)
31 PF06781 UPF0233: Uncharacteri 21.5 3.3E+02 0.0071 19.8 6.6 12 83-94 66-77 (87)
32 KOG4670 Uncharacterized conser 20.7 3.2E+02 0.0069 26.5 6.4 64 41-108 30-94 (602)
33 PRK14740 kdbF potassium-transp 20.5 1.2E+02 0.0025 18.1 2.3 16 51-66 9-24 (29)
No 1
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=100.00 E-value=9.5e-48 Score=293.64 Aligned_cols=117 Identities=35% Similarity=0.755 Sum_probs=108.9
Q ss_pred cceeehhHHHHHHHHHHHHHHHhhccChHHHHHcCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 031386 41 TSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKM 120 (160)
Q Consensus 41 ~~e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lGity~P~kyWAlaiP~~ll~~~~~~~~~Y~~~n~~~T~plds~~tI 120 (160)
++|+|||++|++|+++|++|++|||+||++||++|||||||||||+|+|+|++|++++++++|.++|+++|+|+||++||
T Consensus 2 ~~e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lgity~P~kyWAlaiP~~~l~~~l~~~~~y~~~N~~~T~pld~~~ti 81 (126)
T PF08510_consen 2 SREYYGFVLYILSTVAFVLYLLWAFLPDEWLHSLGITYYPDKYWALAIPSWLLMAMLFTYVGYPAYNLVLTPPLDSLRTI 81 (126)
T ss_pred CceeeehHHHHHHHHHHHHHHHHHhcCHHHHHhcCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccee
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCC-----CCC---CCCCCCCcCCHHHHHHhhcC
Q 031386 121 FDEFTREASSYSPE-----GDD---RPIEPISDISIDKINALMFN 157 (160)
Q Consensus 121 ~D~~a~~~~~~~~~-----~~~---~~ip~i~DLPI~~Vn~~LY~ 157 (160)
+|++++.+.+.+.. .++ +++|+++||||++|||+||+
T Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~~~ip~i~Dlpi~~Vn~~Ly~ 126 (126)
T PF08510_consen 82 TDEYARVPDEDDDSSFEDENAFKEKKPIPPIRDLPITEVNRVLYG 126 (126)
T ss_pred eccccccccccccccccccccccccCCCCCCccCCHHHHHHHHcC
Confidence 99999988665432 111 46999999999999999996
No 2
>KOG2257 consensus N-acetylglucosaminyltransferase complex, subunit PIG-P, required for phosphatidylinositol biosynthesis [Function unknown]
Probab=100.00 E-value=4.6e-41 Score=259.63 Aligned_cols=122 Identities=43% Similarity=0.778 Sum_probs=113.6
Q ss_pred CCccceeehhHHHHHHHHHHHHHHHhhccChHHHHHcCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCC
Q 031386 38 GPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFM-STPSPTS 116 (160)
Q Consensus 38 g~~~~e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lGity~P~kyWAlaiP~~ll~~~~~~~~~Y~~~n~~-~T~plds 116 (160)
+++++|||||++|+.++++|++||+||++|+++|+++||+||||||||+|+|.|++|++++++++|+++|+. .|+||||
T Consensus 3 ~~~t~e~YgF~~yiv~~~~~ViylIWai~P~~~l~~~gi~y~Psk~WalAip~~l~v~~l~~~v~ll~~N~e~tt~pl~S 82 (135)
T KOG2257|consen 3 PHPTREYYGFVLYIVSWTLFVIYLIWAITPVPILESLGITYYPSKYWALAIPTYLLVAVLLAYVFLLGYNFESTTKPLDS 82 (135)
T ss_pred CCCcceehhhHHHHHHHHHHHHHHHhhcccHHHHhhcCceeehHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCcc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999995 6669999
Q ss_pred ccccccccccccCCCCCC---CCCCCCCCCCcCCHHHHHHhhcCCC
Q 031386 117 LNKMFDEFTREASSYSPE---GDDRPIEPISDISIDKINALMFNDV 159 (160)
Q Consensus 117 ~~tI~D~~a~~~~~~~~~---~~~~~ip~i~DLPI~~Vn~~LY~~~ 159 (160)
++|++|+++|+..++... +++++++|+.||.|++||+.+|+.+
T Consensus 83 l~ti~D~y~r~~~e~~v~~kk~~~~a~~~i~Di~isevn~l~~~s~ 128 (135)
T KOG2257|consen 83 LNTITDSYAREIQEFAVKMKKGEDRAIDGISDIRISEVNQLQLNSG 128 (135)
T ss_pred hhhhhhhhhhccchhHHHHhhcccCcCCCcccccHHHHHHHHHhcc
Confidence 999999999997665432 6789999999999999999999864
No 3
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=97.70 E-value=0.00016 Score=51.96 Aligned_cols=61 Identities=13% Similarity=0.489 Sum_probs=47.3
Q ss_pred ehhHHHHHHHHHHHHHHHhhcc-C----hHHHHHcCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031386 45 YGFVGSITTVVATGIFLVWAYV-P----ERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFM 109 (160)
Q Consensus 45 YGFv~~i~s~~~~~lyl~Wa~l-P----~~~L~~lGity~P~kyWAlaiP~~ll~~~~~~~~~Y~~~n~~ 109 (160)
-|++.-..+++.|+-|.+|.++ | |+.+|+ |+|.|.||+.+|+.+++..+.....+.++-++
T Consensus 6 vG~~~l~~a~~vF~YYt~WvlllPFvd~d~~i~~----~F~Pr~yAi~lP~~lll~~~~~vg~f~g~vmi 71 (78)
T PF07297_consen 6 VGLLMLAVALSVFTYYTIWVLLLPFVDEDHPIHS----FFPPREYAIILPIFLLLLGLSGVGTFLGYVMI 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3888999999999999999853 3 345664 89999999999999887766555556655443
No 4
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.062 Score=38.47 Aligned_cols=65 Identities=20% Similarity=0.451 Sum_probs=43.7
Q ss_pred eehhHHHHHHHHHHHHHHHhhc-cChHHHHHcCc--ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031386 44 VYGFVGSITTVVATGIFLVWAY-VPERCLNAIGI--YYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMS 110 (160)
Q Consensus 44 ~YGFv~~i~s~~~~~lyl~Wa~-lP~~~L~~lGi--ty~P~kyWAlaiP~~ll~~~~~~~~~Y~~~n~~~ 110 (160)
.-|--+--.|..+|.-|-+|.. +| +.++..+ .|+-+|.|||++|.......++.+-.++++-++.
T Consensus 7 ~vgl~lv~iSl~iFtYYT~WViilP--FvDs~hiihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vMlK 74 (81)
T KOG3488|consen 7 VVGLMLVYISLAIFTYYTIWVIILP--FVDSMHIIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVMLK 74 (81)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhc--ccchhHHHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455556678888899999987 45 3333322 4888899999999887766555444455554443
No 5
>PRK10633 hypothetical protein; Provisional
Probab=69.12 E-value=14 Score=26.73 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhccChHHHHHcCcccccCcchhHHHHHHHHHHHHH-----HHHHHHHHHH-hcCCCCCC
Q 031386 51 ITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL-----ALVFYIGLNF-MSTPSPTS 116 (160)
Q Consensus 51 i~s~~~~~lyl~Wa~lP~~~L~~lGity~P~kyWAlaiP~~ll~~~~~-----~~~~Y~~~n~-~~T~plds 116 (160)
.++.+-|+.+.+.||+|++-. ....+|.|+.+++++ +.+.+.++.. ..--||||
T Consensus 17 ~L~l~y~~~W~~~aY~~~~~~------------~i~GlP~WF~~sCi~~p~lfi~l~~~~Vk~vFkDi~Ld~ 76 (80)
T PRK10633 17 GLTLLYLAAWLVAAYLPGNAP------------GFTGLPHWFEMACLLLPLLFILLCWLMVKFIFRDIPLED 76 (80)
T ss_pred HHHHHHHHHHHHHHhccCCCC------------cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 355566677777788887532 145688898887644 3444555554 35556664
No 6
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=63.23 E-value=36 Score=26.31 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=30.2
Q ss_pred cceeehhHHHHHHH-HHHHHHHHhhccChHHHHHcCcccccCcchhHHHHHHHHHHHHHHHHHH
Q 031386 41 TSEVYGFVGSITTV-VATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFY 103 (160)
Q Consensus 41 ~~e~YGFv~~i~s~-~~~~lyl~Wa~lP~~~L~~lGity~P~kyWAlaiP~~ll~~~~~~~~~Y 103 (160)
+..||+++.-+... +-.++-+-||..+. .+| |.-.+.+.+.+.++...++|
T Consensus 60 ~~qyyl~ailFvvFDie~~fl~pwav~~~----~lg--------~~~f~e~~vFi~~l~vg~~Y 111 (123)
T COG0838 60 SVQYYLVAILFVVFDVEVVFLFPWAVSFK----ELG--------LFGFLEMLVFIFVLLVGFVY 111 (123)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhh--------HHHHHHHHHHHHHHHHHHHH
Confidence 56788888654443 44555668999887 455 44444455555544444444
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.88 E-value=20 Score=35.00 Aligned_cols=58 Identities=16% Similarity=0.345 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHhhccChHHHHHcCccc-ccCcchh----HHHHHHHHHHHHHHHHHHHHHHH
Q 031386 47 FVGSITTVVATGIFLVWAYVPERCLNAIGIYY-YPSRYWA----LAVPAYAMVTLVLALVFYIGLNF 108 (160)
Q Consensus 47 Fv~~i~s~~~~~lyl~Wa~lP~~~L~~lGity-~P~kyWA----laiP~~ll~~~~~~~~~Y~~~n~ 108 (160)
|..+++|+.+..=.++|.|+|-.||-.++=|| +=+=.|- |.+|..+| +++++|+=..+
T Consensus 75 ~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~ 137 (697)
T PF09726_consen 75 FSVFFVCIAFTSDLICLFFIPVHWLFFAASTYVWVQYVWHTDRGICLPTVSL----WILFVYVEASV 137 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccCCccHHHHHH----HHHHHHHHHHH
Confidence 77777788888888999999999998887776 5555553 55666554 44555665554
No 8
>PF08629 PDE8: PDE8 phosphodiesterase; InterPro: IPR013938 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This region is found at the N terminus of members of PDE8 phosphodiesterase family []. Phosphodiesterase 8 (PDE8) regulates chemotaxis of activated lymphocytes [].
Probab=52.00 E-value=10 Score=25.19 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=13.3
Q ss_pred CCccccCCCccccccccc
Q 031386 2 EDRHSVNSPRRILSFSKR 19 (160)
Q Consensus 2 ~~~~~~~sp~~~~s~~~~ 19 (160)
|++.+ +||||+.+++..
T Consensus 19 es~es-~sP~qTtt~SQg 35 (52)
T PF08629_consen 19 ESDES-NSPRQTTTVSQG 35 (52)
T ss_pred ccccC-CCCCcceeeecC
Confidence 44555 999999999965
No 9
>TIGR01332 cyt_b559_alpha cytochrome b559, alpha subunit. Sequences scoring between trusted and noise cutoffs are fragments.
Probab=50.80 E-value=3.5 Score=29.79 Aligned_cols=35 Identities=20% Similarity=0.560 Sum_probs=25.4
Q ss_pred cchh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 031386 82 RYWA---LAVPAYAMVTLVLALVFYIGLNFMSTPSPTSL 117 (160)
Q Consensus 82 kyWA---laiP~~ll~~~~~~~~~Y~~~n~~~T~plds~ 117 (160)
|||. |.||++++.+.+|...+ ++|+..-||..+..
T Consensus 17 RYWvIHsITIPsLFiaGwLFVstG-LAYdvFGtPrpneY 54 (80)
T TIGR01332 17 RYWVIHSITIPMLFIAGWLFVSTG-LAYDAFGTPRPNEY 54 (80)
T ss_pred eEEEEEeechhHHHhhhhheeecC-cceeccCCCCcccc
Confidence 7894 69999999998766544 35666777776643
No 10
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=50.06 E-value=15 Score=27.83 Aligned_cols=21 Identities=0% Similarity=-0.099 Sum_probs=17.0
Q ss_pred eeehhHHHHHHHHHHHHHHHh
Q 031386 43 EVYGFVGSITTVVATGIFLVW 63 (160)
Q Consensus 43 e~YGFv~~i~s~~~~~lyl~W 63 (160)
..--+++-++|+++|+.|++|
T Consensus 83 ~~LPW~LL~lSW~gF~~Y~~~ 103 (103)
T PF11169_consen 83 SWLPWGLLVLSWIGFIAYIFM 103 (103)
T ss_pred cchhHHHHHHHHHHHHHHHHC
Confidence 344567889999999999986
No 11
>PRK02557 psbE cytochrome b559 subunit alpha; Provisional
Probab=49.09 E-value=3.6 Score=29.81 Aligned_cols=35 Identities=23% Similarity=0.584 Sum_probs=25.2
Q ss_pred cchh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 031386 82 RYWA---LAVPAYAMVTLVLALVFYIGLNFMSTPSPTSL 117 (160)
Q Consensus 82 kyWA---laiP~~ll~~~~~~~~~Y~~~n~~~T~plds~ 117 (160)
|||. |.||++++.+.+|...+ ++|+..-||..|..
T Consensus 18 RYWvIHsITIPsLFiaGwLFVstG-LAYdvFGtPrpneY 55 (81)
T PRK02557 18 RYWVIHAITIPALFIAGWLFVSTG-LAYDAFGTPRPDEY 55 (81)
T ss_pred eEEEEEeechhHHHhhhhheeecC-ceeeccCCCCcccc
Confidence 7894 69999999998766544 35666677776543
No 12
>PF03475 3-alpha: 3-alpha domain; InterPro: IPR005163 This small triple helical domain has been predicted to assume a topology similar to helix-turn-helix domains. These domains are found at the C terminus of proteins related to the YiiM protein (P32157 from SWISSPROT) from Escherichia coli.; PDB: 1O67_C 1O65_C.
Probab=48.24 E-value=11 Score=23.81 Aligned_cols=15 Identities=20% Similarity=0.667 Sum_probs=12.0
Q ss_pred cCCHHHHHHhhcCCC
Q 031386 145 DISIDKINALMFNDV 159 (160)
Q Consensus 145 DLPI~~Vn~~LY~~~ 159 (160)
|++|.+||+++|.+.
T Consensus 1 ~~tV~~~~~~~~~~~ 15 (47)
T PF03475_consen 1 EWTVARVNRLLYHDR 15 (47)
T ss_dssp S-BHHHHHHHHHTS-
T ss_pred CCCHHHHHHHHhCCC
Confidence 689999999999863
No 13
>CHL00064 psbE photosystem II protein V
Probab=48.14 E-value=3.4 Score=30.08 Aligned_cols=35 Identities=17% Similarity=0.590 Sum_probs=25.5
Q ss_pred cchh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 031386 82 RYWA---LAVPAYAMVTLVLALVFYIGLNFMSTPSPTSL 117 (160)
Q Consensus 82 kyWA---laiP~~ll~~~~~~~~~Y~~~n~~~T~plds~ 117 (160)
|||. |.||++++.+.+|.-.+ ++|+..-||..|..
T Consensus 18 RYWvIHsITIPslFiaGwLFVstG-LAYdvFGtPrpneY 55 (83)
T CHL00064 18 RYWVIHSITIPSLFIAGWLFVSTG-LAYDVFGSPRPNEY 55 (83)
T ss_pred eeEEEEeechhHHHhhchheeecC-cceeccCCCCcccc
Confidence 8895 69999999998766544 35666777776643
No 14
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=46.57 E-value=16 Score=23.27 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHhhccChH
Q 031386 47 FVGSITTVVATGIFLVWAYVPER 69 (160)
Q Consensus 47 Fv~~i~s~~~~~lyl~Wa~lP~~ 69 (160)
...-++..+.|+.+++|+|-|..
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 34445556667777899999974
No 15
>PF14163 SieB: Superinfection exclusion protein B
Probab=43.73 E-value=1.1e+02 Score=23.54 Aligned_cols=19 Identities=21% Similarity=0.564 Sum_probs=15.0
Q ss_pred ccChHHHHHcCcccccCcc
Q 031386 65 YVPERCLNAIGIYYYPSRY 83 (160)
Q Consensus 65 ~lP~~~L~~lGity~P~ky 83 (160)
|+|+++++.+|++-+-++|
T Consensus 14 f~P~~~~~~l~l~~~~~~y 32 (151)
T PF14163_consen 14 FLPESLLEWLNLDKFEIKY 32 (151)
T ss_pred HCCHHHHHHhCcchHHHhc
Confidence 8999999999986554443
No 16
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.89 E-value=20 Score=27.45 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=25.8
Q ss_pred ceeehhHHHHHHHHHHHHHHHhhccChHHHHHcCcccccCcchhHHHHH
Q 031386 42 SEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPA 90 (160)
Q Consensus 42 ~e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lGity~P~kyWAlaiP~ 90 (160)
..++||+.|+++.+...++++|--== . .+ .||++|+ -+-+-.
T Consensus 47 tg~~GFi~Y~l~~~i~~il~~~K~~~-~----~~-kyf~s~~-~~f~~~ 88 (110)
T KOG4455|consen 47 TGLHGFIFYFLSVLILSILLVLKAGG-Q----WG-KYFQSRR-NLFTES 88 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHCC-C----HH-hhcCchh-HHHHHH
Confidence 56899999999966666666552110 1 11 3888887 444333
No 17
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=41.25 E-value=35 Score=24.41 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=24.0
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031386 79 YPSRYWALAVPAYAMVTLVLALVFYIGLNF 108 (160)
Q Consensus 79 ~P~kyWAlaiP~~ll~~~~~~~~~Y~~~n~ 108 (160)
+=.|||.++++.++.+..+..-.+|.+++.
T Consensus 6 l~k~YG~~~l~vy~~~s~~~~~~~y~~v~~ 35 (91)
T PF06916_consen 6 LFKKYGYVALGVYLGLSFISLGSCYLAVSS 35 (91)
T ss_pred HHHHhCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 336899999999999998777777776654
No 18
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=39.00 E-value=66 Score=24.26 Aligned_cols=51 Identities=27% Similarity=0.446 Sum_probs=35.8
Q ss_pred ccCCCcccccccccCCCCCCcC--CCcccccCCCCCccceeehhHHHHHHHHHHHHHHHhh
Q 031386 6 SVNSPRRILSFSKRRRATVSFL--DQDDRTYSGFGPKTSEVYGFVGSITTVVATGIFLVWA 64 (160)
Q Consensus 6 ~~~sp~~~~s~~~~~~~~~~~~--d~~~~~~s~~g~~~~e~YGFv~~i~s~~~~~lyl~Wa 64 (160)
.++-|||+-... |-+|..+-. -..| ++ ..+|-||.+.|++..++.+=+=|+
T Consensus 3 ~~~DPRrp~~i~-rYkp~p~~~~~~~~e------D~-~pdYmn~lgmIfsmcGlM~r~KwC 55 (105)
T KOG3462|consen 3 SVNDPRRPNKIK-RYKPPPSAPQGAANE------DP-PPDYMNFLGMIFSMCGLMFRLKWC 55 (105)
T ss_pred CCCCCCCccccc-CCCCCCCcccccccc------CC-ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 568899986665 445655421 1111 22 689999999999999998877775
No 19
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=37.31 E-value=23 Score=29.21 Aligned_cols=18 Identities=33% Similarity=0.792 Sum_probs=15.3
Q ss_pred ccCcchhHHHHHHHHHHHH
Q 031386 79 YPSRYWALAVPAYAMVTLV 97 (160)
Q Consensus 79 ~P~kyWAlaiP~~ll~~~~ 97 (160)
=|.|+| +.+|++++.+++
T Consensus 155 rp~ke~-~yiPAlLLL~lv 172 (183)
T PF11874_consen 155 RPPKEW-VYIPALLLLGLV 172 (183)
T ss_pred CCCcce-EeHHHHHHHHHH
Confidence 488999 999999998754
No 20
>PF00283 Cytochrom_B559: Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits; InterPro: IPR013081 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. Cytochrome b559, which forms part of the reaction centre core of PSII is a heterodimer composed of one alpha subunit (PsbE), one beta (PsbF) subunit, and a haem cofactor. Two histidine residues from each subunit coordinate the haem. Although cytochrome b559 is a redox-active protein, it is unlikely to be involved in the primary electron transport in PSII due to its very slow photo-oxidation and photo-reduction kinetics. Instead, cytochrome b559 could participate in a secondary electron transport pathway that helps protect PSII from photo-damage. Cytochrome b559 is essential for PSII assembly []. This domain occurs in both the alpha and beta subunits of cytochrome B559. In the alpha sbunit it occurs together with a lumenal domain (IPR013082 from INTERPRO), while in the beta subunit it occurs on its own.; GO: 0046872 metal ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009536 plastid, 0009579 thylakoid, 0016021 integral to membrane; PDB: 3ARC_f 3A0H_f 3A0B_f 1W5C_K 1S5L_e 3BZ2_E 3PRQ_E 1IZL_P 2AXT_E 4FBY_R ....
Probab=34.60 E-value=28 Score=20.76 Aligned_cols=13 Identities=38% Similarity=1.058 Sum_probs=9.0
Q ss_pred cchh---HHHHHHHHH
Q 031386 82 RYWA---LAVPAYAMV 94 (160)
Q Consensus 82 kyWA---laiP~~ll~ 94 (160)
|||+ +++|+.++.
T Consensus 13 R~~~IH~l~iPtvf~~ 28 (29)
T PF00283_consen 13 RWWAIHALTIPTVFFL 28 (29)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeeeeecccceEEec
Confidence 6775 578877664
No 21
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=31.97 E-value=47 Score=19.78 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 031386 92 AMVTLVLALVFYIGLN 107 (160)
Q Consensus 92 ll~~~~~~~~~Y~~~n 107 (160)
+++.+++.|++|..+|
T Consensus 10 llv~lLl~YLvYAL~n 25 (29)
T PRK14750 10 LLVLLLLGYLVYALFN 25 (29)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4444555666665555
No 22
>PF03994 DUF350: Domain of Unknown Function (DUF350) ; InterPro: IPR007140 This motif occurs in a small set of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.
Probab=30.49 E-value=47 Score=21.28 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 031386 91 YAMVTLVLALVFYIGLNFMSTPSPTSLNKMFDE 123 (160)
Q Consensus 91 ~ll~~~~~~~~~Y~~~n~~~T~plds~~tI~D~ 123 (160)
|.++++++..+++..++. .|| .|..+.|.+.
T Consensus 1 y~~~g~~l~~~~~~~~~~-~tp-~~~~~eI~~~ 31 (54)
T PF03994_consen 1 YGLVGIVLLLLGFFVFDL-LTP-YDLREEIKKG 31 (54)
T ss_pred CHHHHHHHHHHHHHHHHH-hcC-CChHHHHhCC
Confidence 456777777777888877 777 7776666654
No 23
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=29.84 E-value=1.2e+02 Score=25.02 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=34.1
Q ss_pred eehhHHHHHHHHHHHHHHHhhccChHHHHHcCcccccCcc-hhHHHHHHHHHHHH
Q 031386 44 VYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRY-WALAVPAYAMVTLV 97 (160)
Q Consensus 44 ~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lGity~P~ky-WAlaiP~~ll~~~~ 97 (160)
.+|+...+.|..+|.-|| .+|++|+..+.+++ |- +++.++++.++
T Consensus 38 ~~G~~~SviSQMGFFAYL--------t~h~~glgiFRs~~lWn-~vQ~~li~fvl 83 (180)
T PF14089_consen 38 GVGFTFSVISQMGFFAYL--------TVHRFGLGIFRSKSLWN-AVQLVLIAFVL 83 (180)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHhccHhHHH-HHHHHHHHHHH
Confidence 467777888888888887 68999999999986 75 45666555443
No 24
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=26.40 E-value=66 Score=23.00 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.6
Q ss_pred eeehhHHHHHHHHHHHHHHHhhc
Q 031386 43 EVYGFVGSITTVVATGIFLVWAY 65 (160)
Q Consensus 43 e~YGFv~~i~s~~~~~lyl~Wa~ 65 (160)
=.+|++.++.+++...+|..||=
T Consensus 56 ~~~g~~~~~~~~~l~~~Yv~~An 78 (91)
T PF04341_consen 56 IVLGLGQIVFAWVLTWLYVRRAN 78 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45999999999999999999874
No 25
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=26.21 E-value=1.2e+02 Score=22.60 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=20.1
Q ss_pred ceeehhHHHHHHHHHHHHHHHhhcc
Q 031386 42 SEVYGFVGSITTVVATGIFLVWAYV 66 (160)
Q Consensus 42 ~e~YGFv~~i~s~~~~~lyl~Wa~l 66 (160)
=.--|++..+.-....++||+|..+
T Consensus 34 ws~vv~v~i~~lvaVg~~YL~y~~f 58 (91)
T PF01708_consen 34 WSRVVEVAIFTLVAVGCLYLAYTWF 58 (91)
T ss_pred ceeEeeeeehHHHHHHHHHHHHHHH
Confidence 4556888888888889999999864
No 26
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=26.17 E-value=43 Score=25.47 Aligned_cols=43 Identities=26% Similarity=0.304 Sum_probs=22.0
Q ss_pred ccccccccCCCCCCcCCCcccccCCCCCccceeehhHHHHHHHHHH
Q 031386 12 RILSFSKRRRATVSFLDQDDRTYSGFGPKTSEVYGFVGSITTVVAT 57 (160)
Q Consensus 12 ~~~s~~~~~~~~~~~~d~~~~~~s~~g~~~~e~YGFv~~i~s~~~~ 57 (160)
++++.+++ |+.|++-- |..+--+|-=++..|||+.=+....++
T Consensus 52 ~sldPstp--~lnS~PgR-egv~~~aG~~tna~yGfviGl~i~aLl 94 (108)
T COG4062 52 NSLDPSTP--PLNSFPGR-EGVYATAGYLTNAFYGFVIGLGIMALL 94 (108)
T ss_pred hccCCCCC--CcccCCCc-cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554 66666521 111111143467889998766553333
No 27
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=26.07 E-value=2.3e+02 Score=20.15 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhccChHHHHHcCcccccCcchhHHHHHHHHHHHHHHH-----HHHHHHHH-hcCCCCCC
Q 031386 52 TTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLAL-----VFYIGLNF-MSTPSPTS 116 (160)
Q Consensus 52 ~s~~~~~lyl~Wa~lP~~~L~~lGity~P~kyWAlaiP~~ll~~~~~~~-----~~Y~~~n~-~~T~plds 116 (160)
++.+-++.+.+.||.+..--. -.| -.-.-+|.|+..+++.+. +.+.++.. ..--|||+
T Consensus 13 l~l~yf~~W~~~ay~~~~~~~---~~y----~~i~GlPlWF~~SCi~~~il~~~l~~~~vk~~Fkd~~Ld~ 76 (80)
T PF06196_consen 13 LTLIYFAWWYGFAYGLGNGDG---EEY----KYIFGLPLWFFYSCIGGPILFIILVWLMVKFFFKDIPLDD 76 (80)
T ss_pred HHHHHHHHHHHHHHcCCCCCc---ccc----ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Confidence 444455555555665543111 011 234568888887765333 33444444 34556664
No 28
>PF07853 DUF1648: Protein of unknown function (DUF1648); InterPro: IPR012867 This entry contains hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and many contain a high proportion of hydrophobic residues.
Probab=25.64 E-value=1.2e+02 Score=19.08 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=24.5
Q ss_pred HHHHHHHHhhccChHHHHHcCc----ccccCcc-hhHHHHHHH
Q 031386 55 VATGIFLVWAYVPERCLNAIGI----YYYPSRY-WALAVPAYA 92 (160)
Q Consensus 55 ~~~~lyl~Wa~lP~~~L~~lGi----ty~P~ky-WAlaiP~~l 92 (160)
......+.|..+||+.--..|. +-|=+|. +.+.+|...
T Consensus 7 ~~i~~~~~y~~LP~~ip~H~~~~G~~d~~~~K~~~~~~~p~l~ 49 (51)
T PF07853_consen 7 PLIITLIFYPQLPDQIPTHFNANGEPDGWGSKSFGIFLLPVLM 49 (51)
T ss_pred HHHHHHHHHHHCChhhceeeCCCCCccccccHHHHHHHHHHHH
Confidence 3344557889999997555554 4556666 666666554
No 29
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=25.16 E-value=16 Score=24.80 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=19.1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHH
Q 031386 80 PSRYWALAVPAYAMVTLVLALVFYI 104 (160)
Q Consensus 80 P~kyWAlaiP~~ll~~~~~~~~~Y~ 104 (160)
.+|--.|++|+...+.+++.+++|+
T Consensus 27 ~~kv~tVVlP~l~~~~~~Ivv~vy~ 51 (56)
T PF15012_consen 27 QQKVFTVVLPTLAAVFLFIVVFVYL 51 (56)
T ss_pred HHhheeEehhHHHHHHHHHhheeEE
Confidence 3566789999999988777766664
No 30
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=24.42 E-value=2.4e+02 Score=19.38 Aligned_cols=16 Identities=25% Similarity=0.679 Sum_probs=12.2
Q ss_pred hHHHHHcCcccccCcchh
Q 031386 68 ERCLNAIGIYYYPSRYWA 85 (160)
Q Consensus 68 ~~~L~~lGity~P~kyWA 85 (160)
+..|++-| .++++||-
T Consensus 14 ~~vL~~rG--~~~~~~Wy 29 (65)
T PF08370_consen 14 VAVLKSRG--LFTESYWY 29 (65)
T ss_pred HHHHHHcC--CCCCCcEE
Confidence 35788887 78888885
No 31
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.52 E-value=3.3e+02 Score=19.84 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=7.8
Q ss_pred chhHHHHHHHHH
Q 031386 83 YWALAVPAYAMV 94 (160)
Q Consensus 83 yWAlaiP~~ll~ 94 (160)
.|-++|=.-+++
T Consensus 66 ~WN~~IGfg~~~ 77 (87)
T PF06781_consen 66 NWNLAIGFGLMI 77 (87)
T ss_pred chHHHHHHHHHH
Confidence 677777655554
No 32
>KOG4670 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=20.66 E-value=3.2e+02 Score=26.50 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=46.0
Q ss_pred cceeehhHHHHHHHHHHHHHHHhhccChHHHHH-cCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031386 41 TSEVYGFVGSITTVVATGIFLVWAYVPERCLNA-IGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNF 108 (160)
Q Consensus 41 ~~e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~-lGity~P~kyWAlaiP~~ll~~~~~~~~~Y~~~n~ 108 (160)
.+-+.-|-+-+++.+.++.+.+| +.|+-. +.++|+|+-|=-++|=+|+..-.+|++.-|+.+-.
T Consensus 30 ~r~~lkw~linvs~fsli~f~l~----~k~~Sayl~fgywp~~yae~ti~~l~gL~aLf~ig~y~~~~k 94 (602)
T KOG4670|consen 30 NRILLKWLLINVSAFSLISFMLG----EKWLSAYLTFGYWPQEYAEVTIKALQGLVALFCIGAYMALSK 94 (602)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666667777777777 455544 44579999998999999988877888888887653
No 33
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=20.54 E-value=1.2e+02 Score=18.10 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhcc
Q 031386 51 ITTVVATGIFLVWAYV 66 (160)
Q Consensus 51 i~s~~~~~lyl~Wa~l 66 (160)
....+++++||+.|++
T Consensus 9 ~a~a~~Lf~YLv~ALl 24 (29)
T PRK14740 9 LALATGLFVYLLVALL 24 (29)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4567788888888875
Done!